RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy4349
(80 letters)
>d1pufa_ a.4.1.1 (A:) Homeobox protein hox-a9 {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 77
Score = 47.9 bits (114), Expect = 8e-10
Identities = 10/58 (17%), Positives = 26/58 (44%)
Query: 23 SSPGSGVHSHQRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 80
++P + + T++ R + HQ ++ F N ++A+ L++R ++
Sbjct: 1 NNPAANWLHARSTRKKRCPYTKHQTLELEKEFLFNMYLTRDRRYEVARLLNLTERQVK 58
>d1bw5a_ a.4.1.1 (A:) Insulin gene enhancer protein isl-1 {Rat
(Rattus norvegicus) [TaxId: 10116]}
Length = 66
Score = 47.1 bits (112), Expect = 1e-09
Identities = 19/47 (40%), Positives = 29/47 (61%)
Query: 34 RTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 80
+T R+RT QL T+++ + N PDA +QL + TGLS RV++
Sbjct: 2 KTTRVRTVLNEKQLHTLRTCYAANPRPDALMKEQLVEMTGLSPRVIR 48
>d1p7ia_ a.4.1.1 (A:) Engrailed Homeodomain {Drosophila
melanogaster [TaxId: 7227]}
Length = 53
Score = 44.5 bits (105), Expect = 1e-08
Identities = 14/44 (31%), Positives = 25/44 (56%)
Query: 37 RMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 80
R RT+F QL +K FN N+ + +QL+ + GL++ ++
Sbjct: 1 RPRTAFSSEQLARLKREFNENRYLTERRRQQLSSELGLNEAQIK 44
>d2cuea1 a.4.1.1 (A:7-74) Paired box protein pax6 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 68
Score = 44.0 bits (104), Expect = 3e-08
Identities = 14/45 (31%), Positives = 22/45 (48%)
Query: 36 KRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 80
+R RTSF Q+ ++ F PD ++LA K L + +Q
Sbjct: 2 QRNRTSFTQEQIEALEKEFERTHYPDVFARERLAAKIDLPEARIQ 46
>d1s7ea1 a.4.1.1 (A:103-152) Hepatocyte nuclear factor 6 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 50
Score = 43.3 bits (102), Expect = 3e-08
Identities = 11/42 (26%), Positives = 19/42 (45%)
Query: 39 RTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 80
R F Q RT+ + F N+ P + ++Q+ GL +
Sbjct: 2 RLVFTDVQRRTLHAIFKENKRPSKELQITISQQLGLELSTVS 43
>d1wh7a_ a.4.1.1 (A:) ZF-HD homeobox protein At4g24660 {Thale
cress (Arabidopsis thaliana) [TaxId: 3702]}
Length = 80
Score = 43.8 bits (103), Expect = 4e-08
Identities = 19/66 (28%), Positives = 30/66 (45%), Gaps = 4/66 (6%)
Query: 19 GAGNSSPGSGVHSHQRTKRMRTSFKHHQLRTMKSYFN----INQNPDAKDLKQLAQKTGL 74
G+ SS + S TKR RT F Q M ++ Q D ++Q +TG+
Sbjct: 1 GSSGSSGSNPSSSGGTTKRFRTKFTAEQKEKMLAFAERLGWRIQKHDDVAVEQFCAETGV 60
Query: 75 SKRVLQ 80
++VL+
Sbjct: 61 RRQVLK 66
>d1yz8p1 a.4.1.1 (P:1-60) Pituitary homeobox 2 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 60
Score = 42.6 bits (100), Expect = 6e-08
Identities = 13/45 (28%), Positives = 26/45 (57%)
Query: 36 KRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 80
+R RT F QL+ +++ F N+ PD +++A T L++ ++
Sbjct: 2 RRQRTHFTSQQLQQLEATFQRNRYPDMSTREEIAVWTNLTEARVR 46
>d1fjla_ a.4.1.1 (A:) Paired protein {Fruit fly (Drosophila
melanogaster) [TaxId: 7227]}
Length = 65
Score = 42.6 bits (100), Expect = 8e-08
Identities = 16/47 (34%), Positives = 27/47 (57%)
Query: 34 RTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 80
+ +R RT+F QL ++ F Q PD ++LAQ+T L++ +Q
Sbjct: 1 KQRRSRTTFSASQLDELERAFERTQYPDIYTREELAQRTNLTEARIQ 47
>d1jgga_ a.4.1.1 (A:) Even-skipped homeodomain {Fruit fly
(Drosophila melanogaster) [TaxId: 7227]}
Length = 57
Score = 42.2 bits (99), Expect = 1e-07
Identities = 10/44 (22%), Positives = 18/44 (40%)
Query: 37 RMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 80
R RT+F QL ++ F +LA + L + ++
Sbjct: 1 RYRTAFTRDQLGRLEKEFYKENYVSRPRRCELAAQLNLPESTIK 44
>d2e1oa1 a.4.1.1 (A:8-64) Homeobox protein prh {Human (Homo
sapiens) [TaxId: 9606]}
Length = 57
Score = 41.4 bits (97), Expect = 2e-07
Identities = 10/45 (22%), Positives = 21/45 (46%)
Query: 36 KRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 80
K + F + Q ++ F + + K+LA+ LS+R ++
Sbjct: 1 KGGQVRFSNDQTIELEKKFETQKYLSPPERKRLAKMLQLSERQVK 45
>d2craa1 a.4.1.1 (A:7-64) Homeobox protein hox-b13 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 58
Score = 41.4 bits (97), Expect = 2e-07
Identities = 9/45 (20%), Positives = 22/45 (48%)
Query: 36 KRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 80
++ R + QLR ++ + N+ ++++ T LS+R +
Sbjct: 2 RKKRIPYSKGQLRELEREYAANKFITKDKRRKISAATSLSERQIT 46
>d1b72a_ a.4.1.1 (A:) Homeobox protein hox-b1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 88
Score = 41.9 bits (98), Expect = 2e-07
Identities = 9/58 (15%), Positives = 22/58 (37%)
Query: 23 SSPGSGVHSHQRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 80
+ +RT+F QL ++ F+ N+ ++A L++ ++
Sbjct: 15 KTAKVSEPGLGSPSGLRTNFTTRQLTELEKEFHFNKYLSRARRVEIAATLELNETQVK 72
>d9anta_ a.4.1.1 (A:) Antennapedia Homeodomain {Drosophila
melanogaster [TaxId: 7227]}
Length = 56
Score = 40.5 bits (95), Expect = 5e-07
Identities = 7/42 (16%), Positives = 21/42 (50%)
Query: 39 RTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 80
R ++ +Q ++ F+ N+ + ++A L++R ++
Sbjct: 1 RQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHALSLTERQIK 42
>d1au7a1 a.4.1.1 (A:103-160) Pit-1 POU homeodomain {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 58
Score = 39.9 bits (93), Expect = 7e-07
Identities = 8/44 (18%), Positives = 24/44 (54%)
Query: 37 RMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 80
+ RT+ ++ +F + P ++++ ++A++ L K V++
Sbjct: 1 KRRTTISIAAKDALERHFGEHSKPSSQEIMRMAEELNLEKEVVR 44
>d1x2na1 a.4.1.1 (A:6-67) Homeobox protein pknox1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 62
Score = 39.7 bits (93), Expect = 9e-07
Identities = 11/48 (22%), Positives = 19/48 (39%), Gaps = 3/48 (6%)
Query: 36 KRMRTSFKHHQLRTMKSYFNINQN---PDAKDLKQLAQKTGLSKRVLQ 80
K R H M+S+ + P + KQ+A +T L+ +
Sbjct: 3 KNKRGVLPKHATNVMRSWLFQHIGHPYPTEDEKKQIAAQTNLTLLQVN 50
>d1ftta_ a.4.1.1 (A:) Thyroid transcription factor 1 homeodomain
{Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 68
Score = 39.5 bits (92), Expect = 1e-06
Identities = 8/45 (17%), Positives = 19/45 (42%)
Query: 36 KRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 80
++ R F Q+ ++ F + A + + LA L+ ++
Sbjct: 3 RKRRVLFSQAQVYELERRFKQQKYLSAPEREHLASMIHLTPTQVK 47
>d1ig7a_ a.4.1.1 (A:) Msx-1 homeodomain {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 58
Score = 39.1 bits (91), Expect = 2e-06
Identities = 8/45 (17%), Positives = 19/45 (42%)
Query: 36 KRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 80
++ RT F QL ++ F Q + + + L++ ++
Sbjct: 1 RKPRTPFTTAQLLALERKFRQKQYLSIAERAEFSSSLSLTETQVK 45
>d1zq3p1 a.4.1.1 (P:2-68) Homeotic bicoid protein {Fruit fly
(Drosophila melanogaster) [TaxId: 7227]}
Length = 67
Score = 38.4 bits (89), Expect = 4e-06
Identities = 11/45 (24%), Positives = 21/45 (46%)
Query: 36 KRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 80
+R RT+F Q+ ++ +F + A L L+ K L ++
Sbjct: 2 RRTRTTFTSSQIAELEQHFLQGRYLTAPRLADLSAKLALGTAQVK 46
>d1e3oc1 a.4.1.1 (C:104-160) Oct-1 POU Homeodomain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 57
Score = 37.6 bits (87), Expect = 5e-06
Identities = 11/42 (26%), Positives = 24/42 (57%)
Query: 39 RTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 80
RTS + + ++ F NQ P ++D+ +A++ + K V++
Sbjct: 2 RTSIETNIRVALEKSFMENQKPTSEDITLIAEQLNMEKEVIR 43
>d1vnda_ a.4.1.1 (A:) VND/NK-2 protein {Fruit fly (Drosophila
melanogaster) [TaxId: 7227]}
Length = 77
Score = 38.1 bits (88), Expect = 6e-06
Identities = 8/48 (16%), Positives = 19/48 (39%)
Query: 33 QRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 80
+ ++ R F Q ++ F + A + + LA L+ ++
Sbjct: 7 NKKRKRRVLFTKAQTYELERRFRQQRYLSAPEREHLASLIRLTPTQVK 54
>d2cufa1 a.4.1.1 (A:8-89) Homeobox-containing protein 1, HMBOX1
(Flj21616) {Human (Homo sapiens) [TaxId: 9606]}
Length = 82
Score = 38.1 bits (88), Expect = 7e-06
Identities = 12/44 (27%), Positives = 20/44 (45%)
Query: 37 RMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 80
R +++ L M+SYFN NQ PD +++A +
Sbjct: 2 GSRFTWRKECLAVMESYFNENQYPDEAKREEIANACNAVIQKPG 45
>d1ocpa_ a.4.1.1 (A:) Oct-3 POU Homeodomain {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 67
Score = 37.7 bits (87), Expect = 8e-06
Identities = 13/48 (27%), Positives = 25/48 (52%)
Query: 33 QRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 80
Q KR RTS ++ ++++ F P + + +A + GL K V++
Sbjct: 6 QARKRKRTSIENRVRWSLETMFLKCPKPSLQQITHIANQLGLEKDVVR 53
>d1le8a_ a.4.1.1 (A:) Mating type protein A1 Homeodomain {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 53
Score = 37.2 bits (86), Expect = 9e-06
Identities = 7/42 (16%), Positives = 23/42 (54%)
Query: 39 RTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRVLQ 80
++S ++ F Q+ ++K+ +++A+K G++ ++
Sbjct: 1 KSSISPQARAFLEQVFRRKQSLNSKEKEEVAKKCGITPLQVR 42
>d1pufb_ a.4.1.1 (B:) pbx1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 73
Score = 36.1 bits (83), Expect = 3e-05
Identities = 11/48 (22%), Positives = 21/48 (43%), Gaps = 3/48 (6%)
Query: 36 KRMRTSFKHHQLRTMKSYFN---INQNPDAKDLKQLAQKTGLSKRVLQ 80
+R R +F + YF N P + ++LA+K G++ +
Sbjct: 2 RRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVS 49
>d2cqxa1 a.4.1.1 (A:8-66) LAG1 longevity assurance homolog 5,
LASS5 {Mouse (Mus musculus) [TaxId: 10090]}
Length = 59
Score = 34.7 bits (80), Expect = 8e-05
Identities = 12/45 (26%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
Query: 37 RMRTSFKHHQLRTMKSYFN-INQNPDAKDLKQLAQKTGLSKRVLQ 80
+ K T++ F + + PD K LK L+++ S R +Q
Sbjct: 3 KDSPVNKVEPNDTLEKVFVSVTKYPDEKRLKGLSKQLDWSVRKIQ 47
>d1k61a_ a.4.1.1 (A:) mat alpha2 Homeodomain {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 60
Score = 34.4 bits (79), Expect = 1e-04
Identities = 14/50 (28%), Positives = 23/50 (46%), Gaps = 7/50 (14%)
Query: 34 RTKRMRTSFKHHQLRTMKSYFNINQN---PDAKDLKQLAQKTGLSKRVLQ 80
R R F +R ++S+F N D K L+ L + T LS+ ++
Sbjct: 1 RGHR----FTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIK 46
>d1wi3a_ a.4.1.1 (A:) DNA-binding protein SATB2 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 71
Score = 34.7 bits (79), Expect = 1e-04
Identities = 11/51 (21%), Positives = 21/51 (41%), Gaps = 1/51 (1%)
Query: 31 SHQRTKRMRTSFKHHQLRTMKSYF-NINQNPDAKDLKQLAQKTGLSKRVLQ 80
S R RT L ++S+ ++ PD + + L+ + L K +
Sbjct: 3 SGSSGPRSRTKISLEALGILQSFIHDVGLYPDQEAIHTLSAQLDLPKHTII 53
>d1lfba_ a.4.1.1 (A:) Hepatocyte nuclear factor 1a (LFB1/HNF1)
{Rat (Rattus rattus) [TaxId: 10117]}
Length = 78
Score = 33.6 bits (76), Expect = 4e-04
Identities = 4/37 (10%), Positives = 15/37 (40%)
Query: 39 RTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLS 75
R + + + + +NP ++ + L ++ +
Sbjct: 1 RFKWGPASQQILFQAYERQKNPSKEERETLVEECNRA 37
>d1uhsa_ a.4.1.1 (A:) Homeodomain-only protein, Hop {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 72
Score = 33.0 bits (75), Expect = 4e-04
Identities = 10/46 (21%), Positives = 18/46 (39%), Gaps = 1/46 (2%)
Query: 36 KRMRTSFKHHQLRTMKSYFNINQN-PDAKDLKQLAQKTGLSKRVLQ 80
+ Q+ ++ FN PD L +A + GL++ Q
Sbjct: 2 SEGAATMTEDQVEILEYNFNKVNKHPDPTTLCLIAAEAGLTEEQTQ 47
>d1x2ma1 a.4.1.1 (A:8-59) Lag1 longevity assurance homolog 6,
LASS6 {Mouse (Mus musculus) [TaxId: 10090]}
Length = 52
Score = 30.5 bits (69), Expect = 0.004
Identities = 9/37 (24%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
Query: 45 HQLRTMKSYFN-INQNPDAKDLKQLAQKTGLSKRVLQ 80
++ F I ++PD K L+ L+++ R +Q
Sbjct: 3 QPNAILEKVFTAITKHPDEKRLEGLSKQLDWDVRSIQ 39
>d1e5da1 c.23.5.1 (A:251-402) Rubredoxin oxygen:oxidoreductase
(ROO), C-terminal domain {Desulfovibrio gigas [TaxId:
879]}
Length = 152
Score = 25.0 bits (54), Expect = 0.89
Identities = 9/43 (20%), Positives = 14/43 (32%)
Query: 26 GSGVHSHQRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQL 68
GS S + TK + + + P D +QL
Sbjct: 93 GSFGWSGESTKVLAEWLTGMGFDMPATPVKVKNVPTHADYEQL 135
>g1aym.1 b.121.4.1 (4:,2:) Rhinovirus coat proteins {Human
rhinovirus 16, (HRV-16) [TaxId: 31708]}
Length = 296
Score = 24.4 bits (53), Expect = 1.5
Identities = 18/62 (29%), Positives = 21/62 (33%), Gaps = 12/62 (19%)
Query: 19 GAGNSSPGSGVHSHQRTKRMRTSFKHHQLRTMKSYFNINQNPDAKDLKQLAQKTGLSKRV 78
GA S G HS Q +S YFNIN DA S R+
Sbjct: 1 GAQVSRQNVGTHSTQNMVSNGSSLN---------YFNINYFKDAASSGASRL---DSDRI 48
Query: 79 LQ 80
+Q
Sbjct: 49 IQ 50
>d3c0na2 f.8.1.1 (A:85-468) (Pro)aerolysin, pore-forming lobe
{Aeromonas hydrophila [TaxId: 644]}
Length = 384
Score = 22.5 bits (48), Expect = 7.4
Identities = 5/38 (13%), Positives = 12/38 (31%)
Query: 6 DLSSSMESLSYESGAGNSSPGSGVHSHQRTKRMRTSFK 43
D+ + + + N G +T ++F
Sbjct: 55 DMDVTRDGDGWVIRGNNDGGCDGYRCGDKTAIKVSNFA 92
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.310 0.122 0.334
Gapped
Lambda K H
0.267 0.0635 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 254,461
Number of extensions: 8658
Number of successful extensions: 69
Number of sequences better than 10.0: 1
Number of HSP's gapped: 66
Number of HSP's successfully gapped: 38
Length of query: 80
Length of database: 2,407,596
Length adjustment: 46
Effective length of query: 34
Effective length of database: 1,776,016
Effective search space: 60384544
Effective search space used: 60384544
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 47 (22.1 bits)