BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy4350
(107 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q68EY3|LHX9_XENLA LIM/homeobox protein Lhx9 OS=Xenopus laevis GN=lhx9 PE=2 SV=1
Length = 331
Score = 92.8 bits (229), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 38/67 (56%), Positives = 52/67 (77%)
Query: 13 PEEKSSCGGCGQPIIDRFYLLAVDRQWHLGCLQCAHCHVPLHSELSCFSRHGNIYCKQDF 72
PE+ + C GCG I DR+YLLAVD+QWHL CL+C C + L SEL+CF++ G+IYCK+D+
Sbjct: 67 PEKPTLCAGCGGKISDRYYLLAVDKQWHLRCLKCCECKLTLESELTCFAKDGSIYCKEDY 126
Query: 73 FRYSQAR 79
+R+S R
Sbjct: 127 YRFSVKR 133
>sp|A0JNI8|LHX9_BOVIN LIM/homeobox protein Lhx9 OS=Bos taurus GN=LHX9 PE=2 SV=2
Length = 397
Score = 90.9 bits (224), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 40/74 (54%), Positives = 53/74 (71%), Gaps = 1/74 (1%)
Query: 2 LKDRDDSSSP-CPEEKSSCGGCGQPIIDRFYLLAVDRQWHLGCLQCAHCHVPLHSELSCF 60
L RD P PE+ + C GCG I DR+YLLAVD+QWHL CL+C C + L SEL+CF
Sbjct: 53 LNGRDAGMPPLSPEKPALCAGCGGKIADRYYLLAVDKQWHLRCLKCCECKLALESELTCF 112
Query: 61 SRHGNIYCKQDFFR 74
++ G+IYCK+D++R
Sbjct: 113 AKDGSIYCKEDYYR 126
>sp|Q80W90|LHX9_RAT LIM/homeobox protein Lhx9 OS=Rattus norvegicus GN=Lhx9 PE=2 SV=1
Length = 388
Score = 90.5 bits (223), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 40/74 (54%), Positives = 53/74 (71%), Gaps = 1/74 (1%)
Query: 2 LKDRDDSSSP-CPEEKSSCGGCGQPIIDRFYLLAVDRQWHLGCLQCAHCHVPLHSELSCF 60
L RD P PE+ + C GCG I DR+YLLAVD+QWHL CL+C C + L SEL+CF
Sbjct: 44 LNGRDAGMPPLSPEKPALCAGCGGKISDRYYLLAVDKQWHLRCLKCCECKLALESELTCF 103
Query: 61 SRHGNIYCKQDFFR 74
++ G+IYCK+D++R
Sbjct: 104 AKDGSIYCKEDYYR 117
>sp|Q9NQ69|LHX9_HUMAN LIM/homeobox protein Lhx9 OS=Homo sapiens GN=LHX9 PE=1 SV=3
Length = 397
Score = 90.5 bits (223), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 40/74 (54%), Positives = 53/74 (71%), Gaps = 1/74 (1%)
Query: 2 LKDRDDSSSP-CPEEKSSCGGCGQPIIDRFYLLAVDRQWHLGCLQCAHCHVPLHSELSCF 60
L RD P PE+ + C GCG I DR+YLLAVD+QWHL CL+C C + L SEL+CF
Sbjct: 53 LNGRDAGMPPLSPEKPALCAGCGGKISDRYYLLAVDKQWHLRCLKCCECKLALESELTCF 112
Query: 61 SRHGNIYCKQDFFR 74
++ G+IYCK+D++R
Sbjct: 113 AKDGSIYCKEDYYR 126
>sp|Q9WUH2|LHX9_MOUSE LIM/homeobox protein Lhx9 OS=Mus musculus GN=Lhx9 PE=1 SV=3
Length = 397
Score = 90.1 bits (222), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 40/74 (54%), Positives = 53/74 (71%), Gaps = 1/74 (1%)
Query: 2 LKDRDDSSSP-CPEEKSSCGGCGQPIIDRFYLLAVDRQWHLGCLQCAHCHVPLHSELSCF 60
L RD P PE+ + C GCG I DR+YLLAVD+QWHL CL+C C + L SEL+CF
Sbjct: 53 LNGRDAGMPPLSPEKPALCAGCGGKISDRYYLLAVDKQWHLRCLKCCECKLALESELTCF 112
Query: 61 SRHGNIYCKQDFFR 74
++ G+IYCK+D++R
Sbjct: 113 AKDGSIYCKEDYYR 126
>sp|A2I8Z7|LHX9_ASTFA LIM/homeobox protein Lhx9 OS=Astyanax fasciatus GN=lhx9 PE=2 SV=1
Length = 377
Score = 90.1 bits (222), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 37/65 (56%), Positives = 50/65 (76%)
Query: 10 SPCPEEKSSCGGCGQPIIDRFYLLAVDRQWHLGCLQCAHCHVPLHSELSCFSRHGNIYCK 69
S PE+ + C GCG I DR+YLLAVD+QWHL CL+C C + L SEL+CF++ G+IYCK
Sbjct: 43 SVSPEKPALCAGCGSKISDRYYLLAVDKQWHLRCLKCCECKLALESELTCFAKDGSIYCK 102
Query: 70 QDFFR 74
+D++R
Sbjct: 103 EDYYR 107
>sp|Q1LWV4|LHX9_DANRE LIM/homeobox protein Lhx9 OS=Danio rerio GN=lhx9 PE=2 SV=1
Length = 396
Score = 89.7 bits (221), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 37/65 (56%), Positives = 50/65 (76%)
Query: 10 SPCPEEKSSCGGCGQPIIDRFYLLAVDRQWHLGCLQCAHCHVPLHSELSCFSRHGNIYCK 69
S PE+ + C GCG I DR+YLLAVD+QWHL CL+C C + L SEL+CF++ G+IYCK
Sbjct: 62 SMSPEKPALCAGCGGKISDRYYLLAVDKQWHLRCLKCCECKLALESELTCFAKDGSIYCK 121
Query: 70 QDFFR 74
+D++R
Sbjct: 122 EDYYR 126
>sp|A2PZF9|LHX9_GLARU LIM/homeobox protein Lhx9 OS=Glandirana rugosa GN=lhx9 PE=2 SV=1
Length = 379
Score = 89.7 bits (221), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 36/62 (58%), Positives = 49/62 (79%)
Query: 13 PEEKSSCGGCGQPIIDRFYLLAVDRQWHLGCLQCAHCHVPLHSELSCFSRHGNIYCKQDF 72
PE+ + C GCG I DR+YLLAVD+QWHL CL+C C + L SEL+CF++ G+IYCK+D+
Sbjct: 47 PEKPTLCAGCGGKISDRYYLLAVDKQWHLRCLKCCECKLALESELTCFAKDGSIYCKEDY 106
Query: 73 FR 74
+R
Sbjct: 107 YR 108
>sp|Q90881|LHX9_CHICK LIM/homeobox protein Lhx9 OS=Gallus gallus GN=LHX9 PE=2 SV=2
Length = 397
Score = 89.4 bits (220), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 38/74 (51%), Positives = 54/74 (72%), Gaps = 1/74 (1%)
Query: 2 LKDRDDSSSP-CPEEKSSCGGCGQPIIDRFYLLAVDRQWHLGCLQCAHCHVPLHSELSCF 60
+ R+ + P PE+ + C GCG I DR+YLLAVD+QWHL CL+C C + L SEL+CF
Sbjct: 53 MNGRETNMPPMSPEKPALCAGCGGKISDRYYLLAVDKQWHLRCLKCCECKLALESELTCF 112
Query: 61 SRHGNIYCKQDFFR 74
++ G+IYCK+D++R
Sbjct: 113 AKDGSIYCKEDYYR 126
>sp|Q9Z0S2|LHX2_MOUSE LIM/homeobox protein Lhx2 OS=Mus musculus GN=Lhx2 PE=1 SV=1
Length = 406
Score = 89.0 bits (219), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 39/75 (52%), Positives = 52/75 (69%), Gaps = 4/75 (5%)
Query: 4 DRDDSSSPCPEEKSS----CGGCGQPIIDRFYLLAVDRQWHLGCLQCAHCHVPLHSELSC 59
DR D+ + P S C GCG I DR+YLLAVD+QWH+ CL+C C + L SEL+C
Sbjct: 34 DRGDTETTMPSISSDRAALCAGCGGKISDRYYLLAVDKQWHMRCLKCCECKLNLESELTC 93
Query: 60 FSRHGNIYCKQDFFR 74
FS+ G+IYCK+D++R
Sbjct: 94 FSKDGSIYCKEDYYR 108
>sp|P50458|LHX2_HUMAN LIM/homeobox protein Lhx2 OS=Homo sapiens GN=LHX2 PE=2 SV=2
Length = 406
Score = 88.6 bits (218), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 39/75 (52%), Positives = 52/75 (69%), Gaps = 4/75 (5%)
Query: 4 DRDDSSSPCPEEKSS----CGGCGQPIIDRFYLLAVDRQWHLGCLQCAHCHVPLHSELSC 59
DR D+ + P S C GCG I DR+YLLAVD+QWH+ CL+C C + L SEL+C
Sbjct: 34 DRGDTETTMPSISSDRAALCAGCGGKISDRYYLLAVDKQWHMRCLKCCECKLNLESELTC 93
Query: 60 FSRHGNIYCKQDFFR 74
FS+ G+IYCK+D++R
Sbjct: 94 FSKDGSIYCKEDYYR 108
>sp|P36198|LHX2_RAT LIM/homeobox protein Lhx2 OS=Rattus norvegicus GN=Lhx2 PE=2 SV=1
Length = 426
Score = 88.6 bits (218), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 39/75 (52%), Positives = 52/75 (69%), Gaps = 4/75 (5%)
Query: 4 DRDDSSSPCPEEKSS----CGGCGQPIIDRFYLLAVDRQWHLGCLQCAHCHVPLHSELSC 59
DR D+ + P S C GCG I DR+YLLAVD+QWH+ CL+C C + L SEL+C
Sbjct: 33 DRGDTETTMPSISSDRAALCAGCGGKISDRYYLLAVDKQWHMRCLKCCECKLNLESELTC 92
Query: 60 FSRHGNIYCKQDFFR 74
FS+ G+IYCK+D++R
Sbjct: 93 FSKDGSIYCKEDYYR 107
>sp|P29673|APTE_DROME Protein apterous OS=Drosophila melanogaster GN=ap PE=2 SV=1
Length = 469
Score = 80.9 bits (198), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 34/61 (55%), Positives = 42/61 (68%)
Query: 19 CGGCGQPIIDRFYLLAVDRQWHLGCLQCAHCHVPLHSELSCFSRHGNIYCKQDFFRYSQA 78
C GCG+ I DRFYL AV+++WH CLQC C PL E SC+SR GNIYCK D++ +
Sbjct: 148 CSGCGRQIQDRFYLSAVEKRWHASCLQCYACRQPLERESSCYSRDGNIYCKNDYYSFFGT 207
Query: 79 R 79
R
Sbjct: 208 R 208
>sp|P50481|LHX3_MOUSE LIM/homeobox protein Lhx3 OS=Mus musculus GN=Lhx3 PE=1 SV=1
Length = 400
Score = 72.8 bits (177), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 32/56 (57%), Positives = 39/56 (69%), Gaps = 2/56 (3%)
Query: 19 CGGCGQPIIDRFYLLAVDRQWHLGCLQCAHCHVPLHSELSCFSRHGNIYCKQDFFR 74
C GC Q I+DRF L A+DR WH CL+C+ CHVPL CFSR ++YCK DFF+
Sbjct: 34 CAGCDQHILDRFILKALDRHWHSKCLKCSDCHVPLAER--CFSRGESVYCKDDFFK 87
>sp|Q9H2C1|LHX5_HUMAN LIM/homeobox protein Lhx5 OS=Homo sapiens GN=LHX5 PE=2 SV=1
Length = 402
Score = 72.4 bits (176), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 30/56 (53%), Positives = 37/56 (66%), Gaps = 2/56 (3%)
Query: 19 CGGCGQPIIDRFYLLAVDRQWHLGCLQCAHCHVPLHSELSCFSRHGNIYCKQDFFR 74
C GC +PI+DRF L +DR WH+ C+QC C L + CFSR G +YCK DFFR
Sbjct: 5 CAGCERPILDRFLLNVLDRAWHIKCVQCCECKTNLSEK--CFSREGKLYCKNDFFR 58
>sp|P61376|LHX5_RAT LIM/homeobox protein Lhx5 OS=Rattus norvegicus GN=Lhx5 PE=2 SV=1
Length = 402
Score = 72.0 bits (175), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 30/56 (53%), Positives = 37/56 (66%), Gaps = 2/56 (3%)
Query: 19 CGGCGQPIIDRFYLLAVDRQWHLGCLQCAHCHVPLHSELSCFSRHGNIYCKQDFFR 74
C GC +PI+DRF L +DR WH+ C+QC C L + CFSR G +YCK DFFR
Sbjct: 5 CAGCERPILDRFLLNVLDRAWHIKCVQCCECKTNLSEK--CFSREGKLYCKNDFFR 58
>sp|P61375|LHX5_MOUSE LIM/homeobox protein Lhx5 OS=Mus musculus GN=Lhx5 PE=2 SV=1
Length = 402
Score = 72.0 bits (175), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 30/56 (53%), Positives = 37/56 (66%), Gaps = 2/56 (3%)
Query: 19 CGGCGQPIIDRFYLLAVDRQWHLGCLQCAHCHVPLHSELSCFSRHGNIYCKQDFFR 74
C GC +PI+DRF L +DR WH+ C+QC C L + CFSR G +YCK DFFR
Sbjct: 5 CAGCERPILDRFLLNVLDRAWHIKCVQCCECKTNLSEK--CFSREGKLYCKNDFFR 58
>sp|Q9UBR4|LHX3_HUMAN LIM/homeobox protein Lhx3 OS=Homo sapiens GN=LHX3 PE=1 SV=2
Length = 397
Score = 71.2 bits (173), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 31/56 (55%), Positives = 38/56 (67%), Gaps = 2/56 (3%)
Query: 19 CGGCGQPIIDRFYLLAVDRQWHLGCLQCAHCHVPLHSELSCFSRHGNIYCKQDFFR 74
C GC Q I+DRF L A+DR WH CL+C+ CH PL CFSR ++YCK DFF+
Sbjct: 31 CAGCDQHILDRFILKALDRHWHSKCLKCSDCHTPLAER--CFSRGESVYCKDDFFK 84
>sp|O97581|LHX3_PIG LIM/homeobox protein Lhx3 (Fragment) OS=Sus scrofa GN=LHX3 PE=2
SV=1
Length = 383
Score = 70.5 bits (171), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 31/56 (55%), Positives = 38/56 (67%), Gaps = 2/56 (3%)
Query: 19 CGGCGQPIIDRFYLLAVDRQWHLGCLQCAHCHVPLHSELSCFSRHGNIYCKQDFFR 74
C GC Q I+DRF L A+DR WH CL+C+ CH PL CFSR ++YCK DFF+
Sbjct: 16 CAGCDQHILDRFILKALDRHWHSKCLKCSDCHTPLAER--CFSRGESLYCKDDFFK 69
>sp|P37137|LHX5_XENLA LIM/homeobox protein Lhx5 OS=Xenopus laevis GN=lhx5 PE=1 SV=2
Length = 402
Score = 70.5 bits (171), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 30/56 (53%), Positives = 37/56 (66%), Gaps = 2/56 (3%)
Query: 19 CGGCGQPIIDRFYLLAVDRQWHLGCLQCAHCHVPLHSELSCFSRHGNIYCKQDFFR 74
C GC +PI+DRF L +DR WH+ C+QC C L + CFSR G +YCK DFFR
Sbjct: 5 CAGCERPILDRFLLNVLDRAWHVKCVQCCECKCNLTEK--CFSREGKLYCKTDFFR 58
>sp|P48742|LHX1_HUMAN LIM/homeobox protein Lhx1 OS=Homo sapiens GN=LHX1 PE=1 SV=2
Length = 406
Score = 70.5 bits (171), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 30/56 (53%), Positives = 37/56 (66%), Gaps = 2/56 (3%)
Query: 19 CGGCGQPIIDRFYLLAVDRQWHLGCLQCAHCHVPLHSELSCFSRHGNIYCKQDFFR 74
C GC +PI+DRF L +DR WH+ C+QC C L + CFSR G +YCK DFFR
Sbjct: 4 CAGCKRPILDRFLLNVLDRAWHVKCVQCCECKCNLTEK--CFSREGKLYCKNDFFR 57
>sp|P53411|LHX1_CHICK LIM/homeobox protein Lhx1 OS=Gallus gallus GN=LHX1 PE=2 SV=1
Length = 406
Score = 70.1 bits (170), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 30/56 (53%), Positives = 37/56 (66%), Gaps = 2/56 (3%)
Query: 19 CGGCGQPIIDRFYLLAVDRQWHLGCLQCAHCHVPLHSELSCFSRHGNIYCKQDFFR 74
C GC +PI+DRF L +DR WH+ C+QC C L + CFSR G +YCK DFFR
Sbjct: 4 CAGCKRPILDRFLLNVLDRAWHVKCVQCCECKCNLTEK--CFSREGKLYCKNDFFR 57
>sp|Q5IS89|LHX1_SAIBB LIM/homeobox protein Lhx1 OS=Saimiri boliviensis boliviensis
GN=LHX1 PE=2 SV=1
Length = 406
Score = 70.1 bits (170), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 30/56 (53%), Positives = 37/56 (66%), Gaps = 2/56 (3%)
Query: 19 CGGCGQPIIDRFYLLAVDRQWHLGCLQCAHCHVPLHSELSCFSRHGNIYCKQDFFR 74
C GC +PI+DRF L +DR WH+ C+QC C L + CFSR G +YCK DFFR
Sbjct: 4 CAGCKRPILDRFLLNVLDRAWHVKCVQCCECKCNLTEK--CFSREGKLYCKNDFFR 57
>sp|P63007|LHX1_RAT LIM/homeobox protein Lhx1 OS=Rattus norvegicus GN=Lhx1 PE=2 SV=1
Length = 406
Score = 70.1 bits (170), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 30/56 (53%), Positives = 37/56 (66%), Gaps = 2/56 (3%)
Query: 19 CGGCGQPIIDRFYLLAVDRQWHLGCLQCAHCHVPLHSELSCFSRHGNIYCKQDFFR 74
C GC +PI+DRF L +DR WH+ C+QC C L + CFSR G +YCK DFFR
Sbjct: 4 CAGCKRPILDRFLLNVLDRAWHVKCVQCCECKCNLTEK--CFSREGKLYCKNDFFR 57
>sp|Q5IS44|LHX1_PANTR LIM/homeobox protein Lhx1 OS=Pan troglodytes GN=LHX1 PE=2 SV=1
Length = 406
Score = 70.1 bits (170), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 30/56 (53%), Positives = 37/56 (66%), Gaps = 2/56 (3%)
Query: 19 CGGCGQPIIDRFYLLAVDRQWHLGCLQCAHCHVPLHSELSCFSRHGNIYCKQDFFR 74
C GC +PI+DRF L +DR WH+ C+QC C L + CFSR G +YCK DFFR
Sbjct: 4 CAGCKRPILDRFLLNVLDRAWHVKCVQCCECKCNLTEK--CFSREGKLYCKNDFFR 57
>sp|P63006|LHX1_MOUSE LIM/homeobox protein Lhx1 OS=Mus musculus GN=Lhx1 PE=1 SV=1
Length = 406
Score = 70.1 bits (170), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 30/56 (53%), Positives = 37/56 (66%), Gaps = 2/56 (3%)
Query: 19 CGGCGQPIIDRFYLLAVDRQWHLGCLQCAHCHVPLHSELSCFSRHGNIYCKQDFFR 74
C GC +PI+DRF L +DR WH+ C+QC C L + CFSR G +YCK DFFR
Sbjct: 4 CAGCKRPILDRFLLNVLDRAWHVKCVQCCECKCNLTEK--CFSREGKLYCKNDFFR 57
>sp|P63008|LHX1_MESAU LIM/homeobox protein Lhx1 OS=Mesocricetus auratus GN=Lhx1 PE=2
SV=1
Length = 406
Score = 70.1 bits (170), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 30/56 (53%), Positives = 37/56 (66%), Gaps = 2/56 (3%)
Query: 19 CGGCGQPIIDRFYLLAVDRQWHLGCLQCAHCHVPLHSELSCFSRHGNIYCKQDFFR 74
C GC +PI+DRF L +DR WH+ C+QC C L + CFSR G +YCK DFFR
Sbjct: 4 CAGCKRPILDRFLLNVLDRAWHVKCVQCCECKCNLTEK--CFSREGKLYCKNDFFR 57
>sp|P29674|LHX1_XENLA LIM/homeobox protein Lhx1 OS=Xenopus laevis GN=lhx1 PE=1 SV=1
Length = 403
Score = 70.1 bits (170), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 30/56 (53%), Positives = 37/56 (66%), Gaps = 2/56 (3%)
Query: 19 CGGCGQPIIDRFYLLAVDRQWHLGCLQCAHCHVPLHSELSCFSRHGNIYCKQDFFR 74
C GC +PI+DRF L +DR WH+ C+QC C L + CFSR G +YCK DFFR
Sbjct: 4 CAGCERPILDRFLLNVLDRAWHVKCVQCCECKCNLTEK--CFSREGKLYCKNDFFR 57
>sp|Q90476|LHX1_DANRE LIM/homeobox protein Lhx1 OS=Danio rerio GN=lhx1a PE=2 SV=1
Length = 405
Score = 70.1 bits (170), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 30/56 (53%), Positives = 37/56 (66%), Gaps = 2/56 (3%)
Query: 19 CGGCGQPIIDRFYLLAVDRQWHLGCLQCAHCHVPLHSELSCFSRHGNIYCKQDFFR 74
C GC +PI+DRF L +DR WH+ C+QC C L + CFSR G +YCK DFFR
Sbjct: 4 CAGCERPILDRFLLNVLDRAWHIKCVQCCECKCNLTEK--CFSREGKLYCKNDFFR 57
>sp|P53776|LHX4_MOUSE LIM/homeobox protein Lhx4 OS=Mus musculus GN=Lhx4 PE=1 SV=4
Length = 390
Score = 69.3 bits (168), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 29/56 (51%), Positives = 38/56 (67%), Gaps = 2/56 (3%)
Query: 19 CGGCGQPIIDRFYLLAVDRQWHLGCLQCAHCHVPLHSELSCFSRHGNIYCKQDFFR 74
C GC Q I+D+F L +DR WH CL+CA C + L CFSR G++YCK+DFF+
Sbjct: 30 CAGCNQHILDKFILKVLDRHWHSSCLKCADCQMQLADR--CFSRAGSVYCKEDFFK 83
>sp|Q969G2|LHX4_HUMAN LIM/homeobox protein Lhx4 OS=Homo sapiens GN=LHX4 PE=1 SV=2
Length = 390
Score = 69.3 bits (168), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 29/56 (51%), Positives = 38/56 (67%), Gaps = 2/56 (3%)
Query: 19 CGGCGQPIIDRFYLLAVDRQWHLGCLQCAHCHVPLHSELSCFSRHGNIYCKQDFFR 74
C GC Q I+D+F L +DR WH CL+CA C + L CFSR G++YCK+DFF+
Sbjct: 30 CAGCNQHILDKFILKVLDRHWHSSCLKCADCQMQLADR--CFSRAGSVYCKEDFFK 83
>sp|P52889|LHX5_DANRE LIM/homeobox protein Lhx5 OS=Danio rerio GN=lhx5 PE=2 SV=1
Length = 399
Score = 67.8 bits (164), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 30/56 (53%), Positives = 37/56 (66%), Gaps = 2/56 (3%)
Query: 19 CGGCGQPIIDRFYLLAVDRQWHLGCLQCAHCHVPLHSELSCFSRHGNIYCKQDFFR 74
C GC +PI+DRF L +DR WH C+QC C+ L + CFSR G +YCK DFFR
Sbjct: 5 CAGCERPILDRFLLNVLDRAWHAKCVQCCECNCNLTEK--CFSRDGKLYCKIDFFR 58
>sp|P53412|LHX3_CHICK LIM/homeobox protein Lhx3 OS=Gallus gallus GN=LHX3 PE=2 SV=1
Length = 395
Score = 66.6 bits (161), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 28/56 (50%), Positives = 36/56 (64%), Gaps = 2/56 (3%)
Query: 19 CGGCGQPIIDRFYLLAVDRQWHLGCLQCAHCHVPLHSELSCFSRHGNIYCKQDFFR 74
C GC Q I+DRF L +DR WH CL+C+ C L + CFSR +YCK+DFF+
Sbjct: 28 CAGCNQHIVDRFILKVLDRHWHSKCLKCSDCQTQLAEK--CFSRGDGVYCKEDFFK 81
>sp|P36200|LHX3_XENLA LIM/homeobox protein Lhx3 OS=Xenopus laevis GN=lhx3 PE=1 SV=1
Length = 395
Score = 66.2 bits (160), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 28/56 (50%), Positives = 36/56 (64%), Gaps = 2/56 (3%)
Query: 19 CGGCGQPIIDRFYLLAVDRQWHLGCLQCAHCHVPLHSELSCFSRHGNIYCKQDFFR 74
C GC Q I+DRF L +DR WH CL+C C + L + CFSR ++YCK DFF+
Sbjct: 28 CAGCNQHIVDRFILKVLDRHWHSKCLKCNDCQIQLAEK--CFSRGDSVYCKDDFFK 81
>sp|Q90421|LHX3_DANRE LIM/homeobox protein Lhx3 OS=Danio rerio GN=lhx3 PE=2 SV=1
Length = 398
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 28/56 (50%), Positives = 36/56 (64%), Gaps = 2/56 (3%)
Query: 19 CGGCGQPIIDRFYLLAVDRQWHLGCLQCAHCHVPLHSELSCFSRHGNIYCKQDFFR 74
C GC Q I+DRF L +DR WH CL+C+ C L + CFSR ++YCK DFF+
Sbjct: 28 CAGCNQHIVDRFILKVLDRHWHSKCLKCSDCQSQLADK--CFSRGDSVYCKDDFFK 81
>sp|P20154|LIN11_CAEEL Protein lin-11 OS=Caenorhabditis elegans GN=lin-11 PE=1 SV=2
Length = 405
Score = 62.0 bits (149), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 28/62 (45%), Positives = 37/62 (59%), Gaps = 3/62 (4%)
Query: 17 SSCGGCGQPIIDRFYLLAVDRQWHLGCLQCAHCHVPLHSELSCFSRHGNIYCKQDFF-RY 75
+ C C QPI+DR+ + + WH CL+C C P+ ++CFSR G I CK DF RY
Sbjct: 66 NECAACAQPILDRYVFTVLGKCWHQSCLRCCDCRAPM--SMTCFSRDGLILCKTDFSRRY 123
Query: 76 SQ 77
SQ
Sbjct: 124 SQ 125
Score = 30.0 bits (66), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 30/65 (46%), Gaps = 2/65 (3%)
Query: 19 CGGC-GQPIIDRFYLLAVDRQWHLGCLQCAHCHVPLHSELSCFSRHGNIY-CKQDFFRYS 76
C GC G+ + A D+ +H+ C QC+ C L + + GN + C+ DF +
Sbjct: 127 CAGCDGKLEKEDLVRRARDKVFHIRCFQCSVCQRLLDTGDQLYIMEGNRFVCQSDFQTAT 186
Query: 77 QARYP 81
+ P
Sbjct: 187 KTSTP 191
>sp|Q8IRC7|AWH_DROME LIM/homeobox protein Awh OS=Drosophila melanogaster GN=Awh PE=1
SV=1
Length = 275
Score = 60.1 bits (144), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 27/58 (46%), Positives = 33/58 (56%)
Query: 15 EKSSCGGCGQPIIDRFYLLAVDRQWHLGCLQCAHCHVPLHSELSCFSRHGNIYCKQDF 72
E SC CG+PI DRF+L WH CL+C C PL + SCF R +YCK D+
Sbjct: 4 ELRSCAACGEPISDRFFLEVGGCSWHAHCLRCCMCMCPLDRQQSCFIRERQVYCKADY 61
>sp|Q68G74|LHX8_HUMAN LIM/homeobox protein Lhx8 OS=Homo sapiens GN=LHX8 PE=2 SV=2
Length = 356
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 37/70 (52%)
Query: 10 SPCPEEKSSCGGCGQPIIDRFYLLAVDRQWHLGCLQCAHCHVPLHSELSCFSRHGNIYCK 69
S CP K C CG I+D++ L D WH+ CL C+ C L SC+ + +I+CK
Sbjct: 66 SGCPPGKCVCNSCGLEIVDKYLLKVNDLCWHVRCLSCSVCRTSLGRHTSCYIKDKDIFCK 125
Query: 70 QDFFRYSQAR 79
D+FR R
Sbjct: 126 LDYFRRYGTR 135
>sp|O35652|LHX8_MOUSE LIM/homeobox protein Lhx8 OS=Mus musculus GN=Lhx8 PE=2 SV=4
Length = 367
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 37/70 (52%)
Query: 10 SPCPEEKSSCGGCGQPIIDRFYLLAVDRQWHLGCLQCAHCHVPLHSELSCFSRHGNIYCK 69
S CP K C CG I+D++ L D WH+ CL C+ C L SC+ + +I+CK
Sbjct: 87 SVCPPGKCVCSSCGLEIVDKYLLKVNDLCWHVRCLSCSVCRTSLGRHTSCYIKDKDIFCK 146
Query: 70 QDFFRYSQAR 79
D+FR R
Sbjct: 147 LDYFRRYGTR 156
>sp|Q8TE12|LMX1A_HUMAN LIM homeobox transcription factor 1-alpha OS=Homo sapiens
GN=LMX1A PE=2 SV=1
Length = 382
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/57 (49%), Positives = 34/57 (59%), Gaps = 2/57 (3%)
Query: 16 KSSCGGCGQPIIDRFYLLAVDRQWHLGCLQCAHCHVPLHSELSCFSRHGNIYCKQDF 72
KS C GC + I+DRF L D WH C+QCA C PL E +CF R +YCK D+
Sbjct: 32 KSVCEGCQRVILDRFLLRLNDSFWHEQCVQCASCKEPL--ETTCFYRDKKLYCKYDY 86
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 24/55 (43%), Gaps = 1/55 (1%)
Query: 19 CGGCGQPII-DRFYLLAVDRQWHLGCLQCAHCHVPLHSELSCFSRHGNIYCKQDF 72
CGGC + I + F + A +HL C C C L + G + CK D+
Sbjct: 94 CGGCFEAIAPNEFVMRAQKSVYHLSCFCCCVCERQLQKGDEFVLKEGQLLCKGDY 148
>sp|P53405|ISL1_DANRE Insulin gene enhancer protein isl-1 OS=Danio rerio GN=isl1 PE=2
SV=1
Length = 349
Score = 57.4 bits (137), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 26/59 (44%), Positives = 36/59 (61%), Gaps = 1/59 (1%)
Query: 17 SSCGGCGQPIIDRFYL-LAVDRQWHLGCLQCAHCHVPLHSELSCFSRHGNIYCKQDFFR 74
S C GCG I D++ L ++ D +WH CL+CA C+ L +CF R G YCK+D+ R
Sbjct: 15 SLCVGCGNQIHDQYILRVSPDLEWHAACLKCAECNQYLDESCTCFVRDGKTYCKRDYIR 73
>sp|P61374|ISL1_RAT Insulin gene enhancer protein ISL-1 OS=Rattus norvegicus GN=Isl1
PE=2 SV=1
Length = 349
Score = 57.4 bits (137), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 26/59 (44%), Positives = 36/59 (61%), Gaps = 1/59 (1%)
Query: 17 SSCGGCGQPIIDRFYL-LAVDRQWHLGCLQCAHCHVPLHSELSCFSRHGNIYCKQDFFR 74
S C GCG I D++ L ++ D +WH CL+CA C+ L +CF R G YCK+D+ R
Sbjct: 15 SLCVGCGNQIHDQYILRVSPDLEWHAACLKCAECNQYLDESCTCFVRDGKTYCKRDYIR 73
>sp|P61372|ISL1_MOUSE Insulin gene enhancer protein ISL-1 OS=Mus musculus GN=Isl1 PE=1
SV=1
Length = 349
Score = 57.4 bits (137), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 26/59 (44%), Positives = 36/59 (61%), Gaps = 1/59 (1%)
Query: 17 SSCGGCGQPIIDRFYL-LAVDRQWHLGCLQCAHCHVPLHSELSCFSRHGNIYCKQDFFR 74
S C GCG I D++ L ++ D +WH CL+CA C+ L +CF R G YCK+D+ R
Sbjct: 15 SLCVGCGNQIHDQYILRVSPDLEWHAACLKCAECNQYLDESCTCFVRDGKTYCKRDYIR 73
>sp|P61373|ISL1_MESAU Insulin gene enhancer protein ISL-1 OS=Mesocricetus auratus
GN=ISL1 PE=2 SV=1
Length = 349
Score = 57.4 bits (137), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 26/59 (44%), Positives = 36/59 (61%), Gaps = 1/59 (1%)
Query: 17 SSCGGCGQPIIDRFYL-LAVDRQWHLGCLQCAHCHVPLHSELSCFSRHGNIYCKQDFFR 74
S C GCG I D++ L ++ D +WH CL+CA C+ L +CF R G YCK+D+ R
Sbjct: 15 SLCVGCGNQIHDQYILRVSPDLEWHAACLKCAECNQYLDESCTCFVRDGKTYCKRDYIR 73
>sp|P61371|ISL1_HUMAN Insulin gene enhancer protein ISL-1 OS=Homo sapiens GN=ISL1 PE=1
SV=1
Length = 349
Score = 57.4 bits (137), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 26/59 (44%), Positives = 36/59 (61%), Gaps = 1/59 (1%)
Query: 17 SSCGGCGQPIIDRFYL-LAVDRQWHLGCLQCAHCHVPLHSELSCFSRHGNIYCKQDFFR 74
S C GCG I D++ L ++ D +WH CL+CA C+ L +CF R G YCK+D+ R
Sbjct: 15 SLCVGCGNQIHDQYILRVSPDLEWHAACLKCAECNQYLDESCTCFVRDGKTYCKRDYIR 73
>sp|Q9R1R0|LHX6_MOUSE LIM/homeobox protein Lhx6 OS=Mus musculus GN=Lhx6 PE=1 SV=2
Length = 363
Score = 57.4 bits (137), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 35/58 (60%)
Query: 16 KSSCGGCGQPIIDRFYLLAVDRQWHLGCLQCAHCHVPLHSELSCFSRHGNIYCKQDFF 73
K+ C CG I+DR+ L + WH+ CL+C+ C L + SC+ ++ IYCK D+F
Sbjct: 67 KNICSSCGLEILDRYLLKVNNLIWHVRCLECSVCRTSLRQQNSCYIKNKEIYCKMDYF 124
>sp|P50211|ISL1_CHICK Insulin gene enhancer protein ISL-1 OS=Gallus gallus GN=ISL1 PE=2
SV=1
Length = 349
Score = 57.4 bits (137), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 26/59 (44%), Positives = 36/59 (61%), Gaps = 1/59 (1%)
Query: 17 SSCGGCGQPIIDRFYL-LAVDRQWHLGCLQCAHCHVPLHSELSCFSRHGNIYCKQDFFR 74
S C GCG I D++ L ++ D +WH CL+CA C+ L +CF R G YCK+D+ R
Sbjct: 15 SLCVGCGNQIHDQYILRVSPDLEWHAACLKCAECNQYLDETCTCFVRDGKTYCKRDYIR 73
>sp|Q801P0|LMO4B_XENLA LIM domain transcription factor LMO4-B OS=Xenopus laevis
GN=lmo4-b PE=2 SV=1
Length = 171
Score = 57.0 bits (136), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 35/58 (60%), Gaps = 1/58 (1%)
Query: 18 SCGGCGQPIIDRFYLLAVDRQWHLGCLQCAHCHVPLHS-ELSCFSRHGNIYCKQDFFR 74
+C GCG I DRF L ++DR WH CL+C+ C L SC+++ G I C+ D+ R
Sbjct: 23 ACAGCGGKIADRFLLYSMDRYWHTRCLKCSCCQAQLGEIGTSCYTKSGMILCRNDYIR 80
>sp|P53413|LMX1B_CHICK LIM/homeobox protein LMX-1.2 OS=Gallus gallus GN=LMX1B PE=2 SV=1
Length = 377
Score = 56.6 bits (135), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 37/63 (58%), Gaps = 3/63 (4%)
Query: 10 SPCPEEKSSCGGCGQPIIDRFYLLAVDRQWHLGCLQCAHCHVPLHSELSCFSRHGNIYCK 69
S CP + + C GC +PI DRF + + WH CLQCA C L + SC+ R +YCK
Sbjct: 25 SECPHQ-AVCEGCQRPISDRFLMRVNESSWHEECLQCAVCQQALTT--SCYFRDRKLYCK 81
Query: 70 QDF 72
QD+
Sbjct: 82 QDY 84
Score = 30.0 bits (66), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 25/57 (43%), Gaps = 1/57 (1%)
Query: 17 SSCGGCGQPII-DRFYLLAVDRQWHLGCLQCAHCHVPLHSELSCFSRHGNIYCKQDF 72
+ C GC + I F + A++ +HL C C C L + G + CK D+
Sbjct: 90 AKCSGCMEKIAPTEFVMRALECVYHLSCFCCCVCERQLRKGDEFVLKEGQLLCKSDY 146
>sp|P50480|ISL2_RAT Insulin gene enhancer protein ISL-2 OS=Rattus norvegicus GN=Isl2
PE=1 SV=1
Length = 360
Score = 56.2 bits (134), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 26/57 (45%), Positives = 34/57 (59%), Gaps = 1/57 (1%)
Query: 19 CGGCGQPIIDRFYL-LAVDRQWHLGCLQCAHCHVPLHSELSCFSRHGNIYCKQDFFR 74
C GCG I D+F L ++ D +WH CL+CA C L +CF R G YCK+D+ R
Sbjct: 27 CVGCGSQIHDQFILRVSPDLEWHAACLKCAECSQYLDETCTCFVRDGKTYCKRDYVR 83
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.324 0.140 0.473
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 44,234,998
Number of Sequences: 539616
Number of extensions: 1707989
Number of successful extensions: 4245
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 205
Number of HSP's successfully gapped in prelim test: 92
Number of HSP's that attempted gapping in prelim test: 3751
Number of HSP's gapped (non-prelim): 492
length of query: 107
length of database: 191,569,459
effective HSP length: 75
effective length of query: 32
effective length of database: 151,098,259
effective search space: 4835144288
effective search space used: 4835144288
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 55 (25.8 bits)