Query psy4350
Match_columns 107
No_of_seqs 115 out of 1072
Neff 9.2
Searched_HMMs 29240
Date Fri Aug 16 23:20:34 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4350.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/4350hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2cup_A Skeletal muscle LIM-pro 99.9 1.3E-22 4.3E-27 119.9 5.2 88 13-104 2-93 (101)
2 2xqn_T Testin, TESS; metal-bin 99.9 4.1E-22 1.4E-26 122.0 5.1 84 15-102 2-88 (126)
3 1m3v_A FLIN4, fusion of the LI 99.8 2.1E-21 7.2E-26 118.4 5.1 85 13-100 2-90 (122)
4 2xjy_A Rhombotin-2; oncoprotei 99.8 8.1E-21 2.8E-25 116.8 4.4 85 16-103 2-92 (131)
5 2jtn_A LIM domain-binding prot 99.8 4.7E-20 1.6E-24 119.2 7.1 87 12-103 56-145 (182)
6 1rut_X Flinc4, fusion protein 99.8 3.6E-20 1.2E-24 120.3 3.1 87 14-103 3-95 (188)
7 2rgt_A Fusion of LIM/homeobox 99.8 6.2E-20 2.1E-24 117.4 4.1 85 14-103 4-91 (169)
8 1b8t_A Protein (CRP1); LIM dom 99.8 2.5E-19 8.5E-24 116.7 5.1 88 13-104 4-141 (192)
9 1iml_A CRIP, cysteine rich int 99.8 6.8E-19 2.3E-23 99.0 5.3 70 17-90 1-72 (76)
10 2cu8_A Cysteine-rich protein 2 99.8 1.1E-18 3.6E-23 98.2 5.9 72 9-82 2-75 (76)
11 2dj7_A Actin-binding LIM prote 99.8 1.5E-18 5.2E-23 98.6 6.3 69 11-82 10-79 (80)
12 1a7i_A QCRP2 (LIM1); LIM domai 99.8 3.3E-19 1.1E-23 101.4 3.4 73 13-89 4-77 (81)
13 2cur_A Skeletal muscle LIM-pro 99.7 5.8E-18 2E-22 93.5 6.2 65 14-81 3-68 (69)
14 1x68_A FHL5 protein; four-and- 99.7 3.3E-18 1.1E-22 96.2 5.2 69 14-86 3-75 (76)
15 2d8z_A Four and A half LIM dom 99.7 5.7E-18 1.9E-22 93.7 6.1 67 13-82 2-69 (70)
16 1j2o_A FLIN2, fusion of rhombo 99.7 5.6E-18 1.9E-22 102.1 6.2 69 15-86 2-72 (114)
17 1wyh_A SLIM 2, skeletal muscle 99.7 8.9E-18 3E-22 93.3 6.2 66 15-82 4-71 (72)
18 1x4k_A Skeletal muscle LIM-pro 99.7 1.3E-17 4.3E-22 92.7 6.6 66 15-82 4-71 (72)
19 2dar_A PDZ and LIM domain prot 99.7 1.2E-17 4.1E-22 96.7 6.6 68 12-82 21-89 (90)
20 1x4l_A Skeletal muscle LIM-pro 99.7 1E-17 3.4E-22 93.2 5.7 65 14-80 3-71 (72)
21 2d8y_A Eplin protein; LIM doma 99.7 5.8E-17 2E-21 94.0 7.2 67 14-82 13-80 (91)
22 2d8x_A Protein pinch; LIM doma 99.7 4.5E-17 1.5E-21 90.1 6.4 66 13-81 2-68 (70)
23 1g47_A Pinch protein; LIM doma 99.7 1.9E-17 6.5E-22 93.1 4.9 68 12-81 7-76 (77)
24 1x62_A C-terminal LIM domain p 99.7 1.7E-17 5.9E-22 93.9 4.4 69 10-81 9-78 (79)
25 1x64_A Alpha-actinin-2 associa 99.7 7.3E-17 2.5E-21 93.2 7.1 67 12-81 21-88 (89)
26 1nyp_A Pinch protein; LIM doma 99.7 3.4E-17 1.2E-21 89.6 5.0 60 15-76 4-64 (66)
27 1x61_A Thyroid receptor intera 99.7 6.1E-17 2.1E-21 90.0 5.5 66 14-82 3-70 (72)
28 1b8t_A Protein (CRP1); LIM dom 99.7 5.1E-17 1.8E-21 105.7 5.8 71 15-89 114-185 (192)
29 1x3h_A Leupaxin; paxillin fami 99.7 7.8E-17 2.7E-21 91.2 5.6 64 16-82 15-79 (80)
30 2co8_A NEDD9 interacting prote 99.7 4.6E-17 1.6E-21 92.8 4.6 66 10-76 9-77 (82)
31 2cuq_A Four and A half LIM dom 99.7 1.1E-16 3.6E-21 90.7 6.0 65 15-82 14-79 (80)
32 2l4z_A DNA endonuclease RBBP8, 99.7 8E-17 2.7E-21 98.3 5.8 64 13-76 58-123 (123)
33 2dlo_A Thyroid receptor-intera 99.7 1.2E-16 4.1E-21 90.7 5.9 65 15-82 14-80 (81)
34 2cor_A Pinch protein; LIM doma 99.7 2.6E-16 8.7E-21 89.1 6.6 66 12-81 11-77 (79)
35 2ehe_A Four and A half LIM dom 99.7 5.7E-17 2E-21 92.2 3.4 66 15-82 14-81 (82)
36 1x63_A Skeletal muscle LIM-pro 99.6 2.4E-16 8.2E-21 89.6 5.8 66 15-82 14-81 (82)
37 3f6q_B LIM and senescent cell 99.6 5.4E-16 1.8E-20 85.8 4.7 62 14-76 9-72 (72)
38 1wig_A KIAA1808 protein; LIM d 99.6 6.4E-16 2.2E-20 86.2 4.4 62 14-76 3-65 (73)
39 2l3k_A Rhombotin-2, linker, LI 99.6 3E-16 1E-20 95.6 2.7 73 17-92 9-83 (123)
40 1x6a_A LIMK-2, LIM domain kina 99.6 1.9E-15 6.5E-20 85.7 5.7 65 15-81 14-80 (81)
41 2egq_A FHL1 protein; LIM domai 99.6 3.2E-15 1.1E-19 83.9 4.9 59 15-74 14-76 (77)
42 2iyb_E Testin, TESS, TES; LIM 99.6 3.6E-15 1.2E-19 81.3 4.1 58 16-74 2-63 (65)
43 1v6g_A Actin binding LIM prote 99.4 1.9E-13 6.5E-18 77.3 5.2 61 15-76 14-75 (81)
44 1rut_X Flinc4, fusion protein 99.3 5.9E-13 2E-17 86.2 3.3 64 18-82 71-136 (188)
45 2xjy_A Rhombotin-2; oncoprotei 99.3 1E-12 3.6E-17 80.4 3.7 59 18-76 68-128 (131)
46 2xqn_T Testin, TESS; metal-bin 99.3 3.7E-12 1.3E-16 77.4 4.9 59 16-75 63-125 (126)
47 2rgt_A Fusion of LIM/homeobox 99.2 3.9E-11 1.3E-15 76.4 5.3 61 16-76 65-128 (169)
48 2jtn_A LIM domain-binding prot 99.1 5.5E-11 1.9E-15 76.6 4.6 60 15-74 118-179 (182)
49 1zfo_A LAsp-1; LIM domain, zin 98.4 5.2E-08 1.8E-12 45.2 1.2 29 16-44 3-31 (31)
50 2ehe_A Four and A half LIM dom 98.4 2.3E-08 8E-13 56.2 -0.5 38 63-103 1-41 (82)
51 2cuq_A Four and A half LIM dom 98.4 2.9E-08 1E-12 55.5 -0.5 38 63-103 1-39 (80)
52 1x6a_A LIMK-2, LIM domain kina 98.4 4.5E-08 1.6E-12 54.8 -0.1 38 64-104 2-40 (81)
53 2egq_A FHL1 protein; LIM domai 98.3 3.2E-08 1.1E-12 54.9 -1.1 38 63-103 1-44 (77)
54 1x3h_A Leupaxin; paxillin fami 98.3 3.7E-08 1.3E-12 55.1 -1.1 39 63-104 1-40 (80)
55 1v6g_A Actin binding LIM prote 98.3 8.5E-08 2.9E-12 53.8 -0.2 38 64-104 2-40 (81)
56 2cup_A Skeletal muscle LIM-pro 98.3 6E-07 2E-11 52.1 3.0 36 15-50 65-101 (101)
57 2dlo_A Thyroid receptor-intera 98.2 1.1E-07 3.7E-12 53.3 -1.0 38 63-103 2-39 (81)
58 1x63_A Skeletal muscle LIM-pro 98.2 1.1E-07 3.7E-12 53.4 -1.5 38 63-103 1-41 (82)
59 1wig_A KIAA1808 protein; LIM d 96.6 0.00067 2.3E-08 36.9 1.2 24 78-103 6-29 (73)
60 1m3v_A FLIN4, fusion of the LI 96.4 0.00069 2.4E-08 40.4 0.8 21 53-74 92-112 (122)
61 2cur_A Skeletal muscle LIM-pro 95.1 0.0053 1.8E-07 32.6 0.6 10 45-54 7-16 (69)
62 1x68_A FHL5 protein; four-and- 95.0 0.0035 1.2E-07 34.0 -0.3 38 45-91 7-47 (76)
63 2iyb_E Testin, TESS, TES; LIM 95.0 0.0018 6.1E-08 34.3 -1.5 18 85-102 8-27 (65)
64 2cor_A Pinch protein; LIM doma 94.9 0.0074 2.5E-07 33.1 0.9 24 78-103 16-39 (79)
65 2dar_A PDZ and LIM domain prot 94.9 0.0025 8.7E-08 35.8 -1.1 38 44-91 26-63 (90)
66 2l3k_A Rhombotin-2, linker, LI 94.8 0.0065 2.2E-07 36.2 0.5 9 46-54 11-19 (123)
67 1nyp_A Pinch protein; LIM doma 94.8 0.0024 8.1E-08 33.7 -1.3 10 45-54 7-16 (66)
68 2d8x_A Protein pinch; LIM doma 94.6 0.0056 1.9E-07 32.6 -0.1 23 79-103 7-29 (70)
69 2d8z_A Four and A half LIM dom 94.6 0.0055 1.9E-07 32.6 -0.2 11 45-55 7-17 (70)
70 1wyh_A SLIM 2, skeletal muscle 94.6 0.0063 2.1E-07 32.5 0.0 11 45-55 7-17 (72)
71 1x62_A C-terminal LIM domain p 94.5 0.0088 3E-07 32.7 0.5 11 45-55 17-27 (79)
72 1x4k_A Skeletal muscle LIM-pro 94.3 0.0061 2.1E-07 32.6 -0.3 38 45-91 7-45 (72)
73 1x4l_A Skeletal muscle LIM-pro 94.1 0.01 3.6E-07 31.7 0.2 11 45-55 7-17 (72)
74 1iml_A CRIP, cysteine rich int 93.9 0.0094 3.2E-07 32.3 -0.2 10 45-54 2-11 (76)
75 2cu8_A Cysteine-rich protein 2 93.6 0.011 3.9E-07 31.9 -0.2 13 44-56 10-22 (76)
76 1x64_A Alpha-actinin-2 associa 93.3 0.017 5.9E-07 32.2 0.3 12 44-55 26-37 (89)
77 3f6q_B LIM and senescent cell 93.1 0.0052 1.8E-07 32.7 -2.0 49 44-100 12-61 (72)
78 1x61_A Thyroid receptor intera 92.8 0.028 9.5E-07 29.9 0.6 10 45-54 7-16 (72)
79 2dj7_A Actin-binding LIM prote 92.7 0.024 8.2E-07 31.1 0.3 10 45-54 17-26 (80)
80 1g47_A Pinch protein; LIM doma 91.6 0.041 1.4E-06 29.6 0.4 12 44-55 12-23 (77)
81 2co8_A NEDD9 interacting prote 90.3 0.089 3.1E-06 28.8 1.0 12 44-55 16-27 (82)
82 2cs3_A Protein C14ORF4, MY039 90.0 0.21 7.1E-06 27.7 2.3 38 11-48 10-47 (93)
83 2l4z_A DNA endonuclease RBBP8, 90.0 0.042 1.4E-06 32.7 -0.6 23 79-103 63-86 (123)
84 1a7i_A QCRP2 (LIM1); LIM domai 89.5 0.054 1.8E-06 29.5 -0.4 10 45-54 9-18 (81)
85 2ct0_A Non-SMC element 1 homol 85.5 1.1 3.7E-05 24.3 3.4 35 10-44 9-43 (74)
86 2d8y_A Eplin protein; LIM doma 83.0 0.86 2.9E-05 25.1 2.4 49 44-101 16-65 (91)
87 3nw0_A Non-structural maintena 80.9 1 3.4E-05 29.8 2.4 30 15-44 179-208 (238)
88 1jjd_A Metallothionein, SMTA; 79.9 2.9 9.9E-05 21.3 3.4 29 45-74 9-38 (55)
89 1j2o_A FLIN2, fusion of rhombo 78.6 1.3 4.4E-05 25.6 2.2 48 45-101 5-55 (114)
90 2yrc_A Protein transport prote 74.9 3.8 0.00013 21.1 3.1 38 9-51 2-41 (59)
91 2ysl_A Tripartite motif-contai 72.8 7 0.00024 20.0 4.0 43 44-90 21-68 (73)
92 2ecy_A TNF receptor-associated 71.7 4.2 0.00014 20.6 2.9 44 44-91 16-62 (66)
93 2gvi_A Conserved hypothetical 71.4 1.2 4.2E-05 28.7 0.8 31 43-74 172-202 (204)
94 1t1h_A Gspef-atpub14, armadill 71.4 7.6 0.00026 20.3 4.0 45 43-91 8-55 (78)
95 2d8t_A Dactylidin, ring finger 65.9 12 0.0004 19.2 4.2 45 44-92 16-62 (71)
96 2djb_A Polycomb group ring fin 64.3 13 0.00044 19.1 4.1 46 43-91 15-62 (72)
97 1weo_A Cellulose synthase, cat 63.0 18 0.00061 20.3 5.2 23 66-90 44-69 (93)
98 3vk6_A E3 ubiquitin-protein li 61.6 5.8 0.0002 22.8 2.3 25 64-90 21-48 (101)
99 2eqg_A Tumor necrosis factor, 60.5 6.8 0.00023 18.9 2.0 17 58-74 21-37 (49)
100 2lbz_A Thuricin17, thurincin H 59.0 4.7 0.00016 17.3 1.2 13 42-54 6-18 (31)
101 4ayc_A E3 ubiquitin-protein li 57.2 16 0.00053 21.5 3.8 44 44-91 54-99 (138)
102 3l11_A E3 ubiquitin-protein li 57.1 13 0.00044 21.0 3.4 45 43-91 15-62 (115)
103 2csy_A Zinc finger protein 183 56.6 13 0.00043 19.6 3.1 43 44-90 16-60 (81)
104 2y43_A E3 ubiquitin-protein li 56.6 14 0.00047 20.3 3.4 46 43-91 22-69 (99)
105 2e5r_A Dystrobrevin alpha; ZZ 55.7 14 0.00049 19.0 3.1 35 37-74 7-44 (63)
106 3fl2_A E3 ubiquitin-protein li 55.2 19 0.00064 20.6 3.9 45 43-91 52-99 (124)
107 2ea6_A Ring finger protein 4; 54.3 9.3 0.00032 19.2 2.2 29 60-90 37-67 (69)
108 1jm7_B BARD1, BRCA1-associated 52.5 11 0.00039 21.4 2.6 42 44-90 23-66 (117)
109 2egp_A Tripartite motif-contai 51.9 14 0.00048 19.1 2.8 28 62-91 29-65 (79)
110 3ztg_A E3 ubiquitin-protein li 51.6 21 0.00071 19.1 3.5 42 44-89 14-60 (92)
111 1chc_A Equine herpes virus-1 r 51.3 14 0.00048 18.5 2.6 28 62-91 23-52 (68)
112 2ecw_A Tripartite motif-contai 51.2 20 0.00069 18.6 3.4 44 44-91 20-71 (85)
113 2kre_A Ubiquitin conjugation f 51.2 24 0.00083 19.7 3.8 46 41-90 27-74 (100)
114 1jm7_A BRCA1, breast cancer ty 51.0 13 0.00046 20.7 2.7 44 44-91 22-70 (112)
115 3ng2_A RNF4, snurf, ring finge 50.6 6.2 0.00021 20.1 1.1 26 63-90 35-62 (71)
116 2dmj_A Poly (ADP-ribose) polym 50.5 8.4 0.00029 22.1 1.8 32 14-45 23-65 (106)
117 2ckl_A Polycomb group ring fin 50.3 21 0.00073 19.8 3.5 45 43-91 15-62 (108)
118 2ecv_A Tripartite motif-contai 49.7 20 0.0007 18.6 3.2 44 44-91 20-71 (85)
119 2kiz_A E3 ubiquitin-protein li 48.7 25 0.00086 17.6 3.7 11 16-26 14-24 (69)
120 2ckl_B Ubiquitin ligase protei 47.2 15 0.00053 22.2 2.7 46 42-90 53-101 (165)
121 2ecm_A Ring finger and CHY zin 46.8 23 0.0008 16.7 3.0 26 63-90 27-54 (55)
122 3lrq_A E3 ubiquitin-protein li 46.4 17 0.00059 20.1 2.7 44 44-91 23-70 (100)
123 3hcs_A TNF receptor-associated 46.1 29 0.001 21.0 3.9 44 44-91 19-65 (170)
124 2kr4_A Ubiquitin conjugation f 46.1 23 0.0008 19.0 3.1 46 42-91 13-60 (85)
125 4ap4_A E3 ubiquitin ligase RNF 45.8 29 0.00099 19.6 3.7 70 17-91 49-125 (133)
126 1wgm_A Ubiquitin conjugation f 45.4 36 0.0012 18.9 3.9 46 41-90 20-68 (98)
127 1uw0_A DNA ligase III; DNA rep 44.5 13 0.00043 21.7 1.9 17 14-30 13-29 (117)
128 3odc_A Poly [ADP-ribose] polym 43.2 12 0.0004 21.8 1.6 33 14-46 17-62 (111)
129 1vs6_Z 50S ribosomal protein L 42.9 9 0.00031 20.4 1.0 9 99-107 38-46 (70)
130 1e4u_A Transcriptional repress 42.9 35 0.0012 18.1 3.5 27 63-91 33-62 (78)
131 1ovx_A ATP-dependent CLP prote 42.4 25 0.00085 18.5 2.7 30 45-74 20-49 (67)
132 1rmd_A RAG1; V(D)J recombinati 42.2 29 0.001 19.5 3.3 45 43-91 23-70 (116)
133 1x4j_A Ring finger protein 38; 41.9 23 0.00079 18.2 2.6 26 63-90 44-71 (75)
134 3v2d_4 50S ribosomal protein L 41.9 9.2 0.00031 20.5 0.9 8 100-107 38-45 (71)
135 1z6u_A NP95-like ring finger p 41.8 30 0.001 20.7 3.4 45 43-91 78-125 (150)
136 2vpb_A Hpygo1, pygopus homolog 41.3 12 0.00043 19.4 1.4 31 14-44 6-40 (65)
137 2ct2_A Tripartite motif protei 41.1 27 0.00093 18.3 2.9 46 44-91 16-68 (88)
138 2yur_A Retinoblastoma-binding 41.1 21 0.00073 18.4 2.4 43 44-90 16-63 (74)
139 2ds5_A CLPX, ATP-dependent CLP 41.0 27 0.00093 17.3 2.6 29 45-73 13-41 (51)
140 3hct_A TNF receptor-associated 40.7 30 0.001 19.6 3.2 43 44-90 19-64 (118)
141 2das_A Zinc finger MYM-type pr 39.4 21 0.00071 18.5 2.0 26 44-69 21-48 (62)
142 2ect_A Ring finger protein 126 38.2 42 0.0014 17.2 4.2 11 79-91 54-64 (78)
143 1nkw_Y 50S ribosomal protein L 37.4 11 0.00037 20.3 0.8 10 98-107 36-45 (73)
144 2csz_A Synaptotagmin-like prot 33.9 58 0.002 17.5 5.4 24 3-26 12-35 (76)
145 2ep4_A Ring finger protein 24; 33.6 50 0.0017 16.7 3.3 27 63-91 36-64 (74)
146 2c2l_A CHIP, carboxy terminus 33.3 45 0.0016 21.5 3.5 48 40-91 205-255 (281)
147 1g25_A CDK-activating kinase a 32.6 41 0.0014 16.5 2.6 30 60-91 23-55 (65)
148 4ic3_A E3 ubiquitin-protein li 31.4 57 0.002 16.7 3.6 42 44-91 25-67 (74)
149 2xeu_A Ring finger protein 4; 30.9 19 0.00065 17.6 1.1 29 61-91 26-56 (64)
150 2e6r_A Jumonji/ARID domain-con 30.5 45 0.0015 18.4 2.6 53 12-74 12-66 (92)
151 2lo3_A SAGA-associated factor 30.4 14 0.00047 17.7 0.4 17 13-29 14-30 (44)
152 2cs2_A Poly [ADP-ribose] polym 29.8 33 0.0011 20.5 2.1 17 14-30 25-41 (134)
153 2ecg_A Baculoviral IAP repeat- 29.8 62 0.0021 16.6 3.1 42 44-91 26-68 (75)
154 1pft_A TFIIB, PFTFIIBN; N-term 29.1 16 0.00055 17.6 0.5 12 44-55 25-36 (50)
155 2jny_A Uncharacterized BCR; st 27.6 27 0.00091 18.3 1.3 24 44-71 11-34 (67)
156 2hf1_A Tetraacyldisaccharide-1 27.5 27 0.00092 18.3 1.3 24 44-71 9-32 (68)
157 2ysj_A Tripartite motif-contai 27.4 61 0.0021 15.7 3.8 29 44-74 21-49 (63)
158 2ecl_A Ring-box protein 2; RNF 27.4 41 0.0014 17.7 2.1 10 17-26 16-25 (81)
159 2jr6_A UPF0434 protein NMA0874 27.1 28 0.00096 18.3 1.3 9 45-53 10-18 (68)
160 1bor_A Transcription factor PM 27.0 36 0.0012 16.4 1.7 9 79-89 39-47 (56)
161 2yql_A PHD finger protein 21A; 26.5 61 0.0021 15.8 2.5 31 12-45 5-37 (56)
162 1twf_J DNA-directed RNA polyme 25.4 27 0.00092 18.6 1.0 13 16-28 4-16 (70)
163 2d8s_A Cellular modulator of i 25.3 84 0.0029 16.6 3.3 20 8-27 7-26 (80)
164 2f42_A STIP1 homology and U-bo 25.2 1.1E+02 0.0037 19.1 4.0 47 41-91 104-153 (179)
165 1znf_A 31ST zinc finger from X 25.0 32 0.0011 12.7 1.1 11 44-54 2-12 (27)
166 3bbo_1 Ribosomal protein L31; 24.8 26 0.00089 21.3 1.0 10 98-107 85-94 (144)
167 3d00_A Tungsten formylmethanof 24.7 15 0.00051 23.4 -0.1 26 42-74 162-187 (191)
168 2js4_A UPF0434 protein BB2007; 24.6 26 0.0009 18.5 0.9 9 45-53 10-18 (70)
169 2pk7_A Uncharacterized protein 24.4 29 0.00099 18.3 1.0 10 44-53 9-18 (69)
170 1ef4_A Subunit N, DNA-directed 24.2 29 0.00099 17.5 1.0 12 16-27 3-14 (55)
171 2yu4_A E3 SUMO-protein ligase 24.1 69 0.0024 17.3 2.7 30 43-74 7-37 (94)
172 2ecn_A Ring finger protein 141 23.7 72 0.0025 15.8 2.6 12 17-28 16-27 (70)
173 3f1f_4 50S ribosomal protein L 23.6 19 0.00064 20.5 0.2 9 99-107 63-71 (97)
174 1ard_A Yeast transcription fac 23.2 36 0.0012 12.8 1.1 11 44-54 3-13 (29)
175 2yt5_A Metal-response element- 22.3 78 0.0027 15.8 2.5 53 15-74 5-61 (66)
176 1wil_A KIAA1045 protein; ring 22.2 44 0.0015 18.5 1.5 32 15-46 14-46 (89)
177 2d8v_A Zinc finger FYVE domain 21.7 34 0.0012 18.0 0.9 16 59-74 22-37 (67)
178 3v43_A Histone acetyltransfera 21.4 67 0.0023 18.2 2.3 8 65-72 77-84 (112)
179 2epr_A POZ-, at HOOK-, and zin 21.4 20 0.00069 16.2 0.0 11 16-26 12-22 (48)
180 3efo_B SEC24 related gene fami 21.2 60 0.0021 25.1 2.6 34 13-51 95-128 (770)
181 1paa_A Yeast transcription fac 20.6 46 0.0016 12.6 1.2 12 44-55 3-14 (30)
182 1loi_A Cyclic 3',5'-AMP specif 20.4 20 0.00069 14.7 -0.1 10 44-53 6-15 (26)
No 1
>2cup_A Skeletal muscle LIM-protein 1; four and half LIM domains protein 1, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 g.39.1.3
Probab=99.87 E-value=1.3e-22 Score=119.95 Aligned_cols=88 Identities=25% Similarity=0.431 Sum_probs=79.2
Q ss_pred CCCCCccccccccccC-ceEEeecCcccccccccccccCCCCCCCCceeccCCeeccHHHHhh-hCCCCCCCCCCCCcch
Q psy4350 13 PEEKSSCGGCGQPIID-RFYLLAVDRQWHLGCLQCAHCHVPLHSELSCFSRHGNIYCKQDFFR-YSQARYPDLPIPKTLV 90 (107)
Q Consensus 13 ~~~~~~C~~C~~~i~~-~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~~C~~~y~~-~~~~~C~~~~C~~~i~ 90 (107)
+.+.++|.+|+++|.. .+.+.++++.||+.||+|..|+++|.+. .|+.+++++||+.||.+ |+ ++|.. |+++|.
T Consensus 2 s~~~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~-~~~~~~g~~yC~~cy~~~~~-~~C~~--C~~~I~ 77 (101)
T 2cup_A 2 SSGSSGCVECRKPIGADSKEVHYKNRFWHDTCFRCAKCLHPLANE-TFVAKDNKILCNKCTTREDS-PKCKG--CFKAIV 77 (101)
T ss_dssp CSCCCBCSSSCCBCCSSSCEEEETTEEEETTTCCCSSSCCCTTSS-CCEEETTEEECHHHHTTCCC-CBCSS--SCCBCC
T ss_pred CCCCCcCcccCCcccCCceEEEECccChhhcCCcccccCCCCCcC-eeECcCCEEEChhHhhhhcC-Ccccc--CCCccc
Confidence 3457889999999974 6678999999999999999999999776 78999999999999999 99 79999 999998
Q ss_pred --hhhhhhccccCCCC
Q psy4350 91 --SFLYDKQGAASEPL 104 (107)
Q Consensus 91 --~~~~~~~g~~~~p~ 104 (107)
+..+++.|+.|||-
T Consensus 78 ~~~~~~~a~~~~~H~~ 93 (101)
T 2cup_A 78 AGDQNVEYKGTVWHKD 93 (101)
T ss_dssp SSSCEEESSSCEEETT
T ss_pred cCCeEEEeCCcchHHh
Confidence 56889999999983
No 2
>2xqn_T Testin, TESS; metal-binding protein, cytoskeleton, focal adhesion, acrosom; 2.62A {Homo sapiens}
Probab=99.85 E-value=4.1e-22 Score=121.98 Aligned_cols=84 Identities=20% Similarity=0.360 Sum_probs=77.6
Q ss_pred CCCccccccccccCceEEeecCcccccccccccccCCCCCCCCceeccCCeeccHHHHhh-hCCCCCCCCCCCCcch--h
Q psy4350 15 EKSSCGGCGQPIIDRFYLLAVDRQWHLGCLQCAHCHVPLHSELSCFSRHGNIYCKQDFFR-YSQARYPDLPIPKTLV--S 91 (107)
Q Consensus 15 ~~~~C~~C~~~i~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~~C~~~y~~-~~~~~C~~~~C~~~i~--~ 91 (107)
..++|.+|+++|.+++.+.++++.||+.||+|..|+++|.+. .|+.+++++||+.||.+ |+ ++|.. |+++|. +
T Consensus 2 ~~~~C~~C~~~I~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~-~f~~~~g~~yC~~cy~~~~~-~~C~~--C~~~I~~~~ 77 (126)
T 2xqn_T 2 EKPRCAGCDELIFSNEYTQAENQNWHLKHFCCFDCDSILAGE-IYVMVNDKPVCKPCYVKNHA-VVCQG--CHNAIDPEV 77 (126)
T ss_dssp CCCBBTTTSSBCCSSCEEEETTEEECGGGSBCTTTCCBCTTS-EEEEETTEEEEHHHHHHHSC-CBCTT--TCSBCCTTS
T ss_pred cCCCCccCCCEeCCceEEeeCCCCccCCCCCcCCCCCCCCcC-EEEeECCEEechHHhCcCcC-ccCcc--cCCcCCcCc
Confidence 357899999999987778999999999999999999999887 79999999999999999 99 79999 999999 4
Q ss_pred hhhhhccccCC
Q psy4350 92 FLYDKQGAASE 102 (107)
Q Consensus 92 ~~~~~~g~~~~ 102 (107)
..+++.|+.||
T Consensus 78 ~~~~a~~~~~H 88 (126)
T 2xqn_T 78 QRVTYNNFSWH 88 (126)
T ss_dssp CEEEETTEEEE
T ss_pred eEEECCCCEee
Confidence 67889999999
No 3
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=99.84 E-value=2.1e-21 Score=118.43 Aligned_cols=85 Identities=29% Similarity=0.584 Sum_probs=74.8
Q ss_pred CCCCCccccccccccCceEEeecCcccccccccccccCCCCCC-CCceeccCCeeccHHHHhh-hCCC--CCCCCCCCCc
Q psy4350 13 PEEKSSCGGCGQPIIDRFYLLAVDRQWHLGCLQCAHCHVPLHS-ELSCFSRHGNIYCKQDFFR-YSQA--RYPDLPIPKT 88 (107)
Q Consensus 13 ~~~~~~C~~C~~~i~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~-~~~~~~~~~~~~C~~~y~~-~~~~--~C~~~~C~~~ 88 (107)
+...++|.+|+++|.+.+++.++++.||+.||+|..|+.+|.+ ...|+.+++++||+.||.+ |+ + +|.. |+++
T Consensus 2 s~~~~~C~~C~~~I~~~~~~~a~~~~wH~~CF~C~~C~~~L~~~~~~~~~~~g~~yC~~cy~~~f~-~~~~C~~--C~~~ 78 (122)
T 1m3v_A 2 SLSWKRCAGCGGKIADRFLLYAMDSYWHSRCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFG-NSGAGGS--GGHM 78 (122)
T ss_dssp CSCCCCBSSSSSCCCSSCCEEETTEEECHHHHCCSSSCCCTTTSEECCEEETTEEECHHHHHHHHC-CCCSSSC--SSCC
T ss_pred CCCCCCCcccCCEeCCcEEEEECCceeHhhCCCcCCCCCcccccCCeEEEECCeeecHHHHHHHcC-CCCcccc--CCCC
Confidence 3457889999999999877899999999999999999999973 2268899999999999999 99 7 9999 9999
Q ss_pred chhhhhhhcccc
Q psy4350 89 LVSFLYDKQGAA 100 (107)
Q Consensus 89 i~~~~~~~~g~~ 100 (107)
|.+..+++.|+.
T Consensus 79 I~~~~~~~~g~~ 90 (122)
T 1m3v_A 79 GSGGDVMVVGEP 90 (122)
T ss_dssp SCCEESSSSSSS
T ss_pred cCchheEEcCCc
Confidence 998777777753
No 4
>2xjy_A Rhombotin-2; oncoprotein, T-cell leukemia, proto-oncogene, transcription, developmental protein; 2.40A {Homo sapiens} PDB: 2xjz_A
Probab=99.82 E-value=8.1e-21 Score=116.85 Aligned_cols=85 Identities=27% Similarity=0.621 Sum_probs=76.3
Q ss_pred CCccccccccccCceEEeecCcccccccccccccCCCCCC-CCceeccCCeeccHHHHhh-hCCC--CCCCCCCCCcchh
Q psy4350 16 KSSCGGCGQPIIDRFYLLAVDRQWHLGCLQCAHCHVPLHS-ELSCFSRHGNIYCKQDFFR-YSQA--RYPDLPIPKTLVS 91 (107)
Q Consensus 16 ~~~C~~C~~~i~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~-~~~~~~~~~~~~C~~~y~~-~~~~--~C~~~~C~~~i~~ 91 (107)
.++|.+|+++|.+.+.+.++++.||+.||+|..|+.+|.. ...|+.+++++||+.||.+ |+ + +|.. |+++|.+
T Consensus 2 ~~~C~~C~~~I~~~~~~~a~~~~wH~~CF~C~~C~~~L~~~~~~~~~~~g~~yC~~~y~~~~~-~~~~C~~--C~~~I~~ 78 (131)
T 2xjy_A 2 LLTCGGCQQNIGDRYFLKAIDQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLFG-QDGLCAS--CDKRIRA 78 (131)
T ss_dssp CCBBTTTCCBCCSSEEEEETTEEEETTTCBCTTTCCBCSSTTCCEEEETTEEECHHHHHHHHC-CCEECTT--TCCEECT
T ss_pred cccCcCCCCEeCCcEEEEECCCcccHHHcccCcCCCccccCCCeEEEECCEEeecCchhhhCC-CccChhh--cCCccCc
Confidence 4689999999999877899999999999999999999963 2278999999999999999 99 6 8999 9999986
Q ss_pred --hhhhhccccCCC
Q psy4350 92 --FLYDKQGAASEP 103 (107)
Q Consensus 92 --~~~~~~g~~~~p 103 (107)
.++.+.|+.|||
T Consensus 79 ~e~~~~a~~~~~H~ 92 (131)
T 2xjy_A 79 YEMTMRVKDKVYHL 92 (131)
T ss_dssp TSEEEEETTEEEEG
T ss_pred cceeEeeCCceECc
Confidence 567889999997
No 5
>2jtn_A LIM domain-binding protein 1, LIM/homeobox protein LHX3; intramolecular (fusion) protein-protein complex, protein binding/transcription complex; NMR {Mus musculus}
Probab=99.81 E-value=4.7e-20 Score=119.21 Aligned_cols=87 Identities=37% Similarity=0.776 Sum_probs=77.6
Q ss_pred CCCCCCccccccccccCceEEeecCcccccccccccccCCCCCCCCceeccCCeeccHHHHhh-hCCCCCCCCCCCCcch
Q psy4350 12 CPEEKSSCGGCGQPIIDRFYLLAVDRQWHLGCLQCAHCHVPLHSELSCFSRHGNIYCKQDFFR-YSQARYPDLPIPKTLV 90 (107)
Q Consensus 12 ~~~~~~~C~~C~~~i~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~~C~~~y~~-~~~~~C~~~~C~~~i~ 90 (107)
.+...++|.+|+++|.+.+++.++++.||+.||+|..|+++|.+. .| .+++++||+.||.+ |+ ++|.. |+++|.
T Consensus 56 ~~~~~~~C~~C~~~I~~~~~~~a~~~~wH~~CF~C~~C~~~L~~~-~f-~~~g~~yC~~~y~~~f~-~kC~~--C~~~I~ 130 (182)
T 2jtn_A 56 GTPEIPMCAGCDQHILDRFILKALDRHWHSKCLKCSDCHVPLAER-CF-SRGESVYCKDDFFKRFG-TKCAA--CQLGIP 130 (182)
T ss_dssp CCCSCCBCBTSSSBCCCSEEEEETTEEECSSTTSCTTTCCCCSSC-CE-EETTEEECHHHHHHTTS-CCCTT--TCCCCC
T ss_pred CCCCCCcCccCCCCccCceeEEecCCeEccccCccCCCCCccCCC-ce-eECCEeeecCccccccc-ccccc--CCCccC
Confidence 456678999999999998778999999999999999999999886 44 78999999999999 99 79999 999998
Q ss_pred h--hhhhhccccCCC
Q psy4350 91 S--FLYDKQGAASEP 103 (107)
Q Consensus 91 ~--~~~~~~g~~~~p 103 (107)
+ .++.+.++.|||
T Consensus 131 ~~~~v~~a~~~~~H~ 145 (182)
T 2jtn_A 131 PTQVVRRAQDFVYHL 145 (182)
T ss_dssp SSCCCCEETTEECCT
T ss_pred CCceEEecCCCCEEe
Confidence 6 355788999997
No 6
>1rut_X Flinc4, fusion protein of LMO4 protein and LIM domain- binding protein 1; B-tandem zipper, protein binding; 1.30A {Mus musculus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 2dfy_X 2xjz_I 2xjy_B
Probab=99.79 E-value=3.6e-20 Score=120.32 Aligned_cols=87 Identities=30% Similarity=0.707 Sum_probs=77.1
Q ss_pred CCCCccccccccccCceEEeecCcccccccccccccCCCCCC-CCceeccCCeeccHHHHhh-hCCC--CCCCCCCCCcc
Q psy4350 14 EEKSSCGGCGQPIIDRFYLLAVDRQWHLGCLQCAHCHVPLHS-ELSCFSRHGNIYCKQDFFR-YSQA--RYPDLPIPKTL 89 (107)
Q Consensus 14 ~~~~~C~~C~~~i~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~-~~~~~~~~~~~~C~~~y~~-~~~~--~C~~~~C~~~i 89 (107)
...+.|.+|+++|.+.+++.++++.||+.||+|..|+++|.. ...|+.+++++||+.||.+ |+ + +|.. |+++|
T Consensus 3 l~~~~C~~C~~~I~~~~~~~a~~~~wH~~CF~C~~C~~~L~~~g~~~~~~~g~~yC~~cy~~~~~-~~~~C~~--C~~~I 79 (188)
T 1rut_X 3 LSWKRCAGCGGKIADRFLLYAMDSYWHSRCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFG-NSGACSA--CGQSI 79 (188)
T ss_dssp -CCCBBTTTCCBCCCSEEEEETTEEECGGGCBCTTTCCBHHHHCSEEEEETTEEECHHHHHHHHS-CCEECTT--TCCEE
T ss_pred CCCCcCccCCCEeCCceeEEecCcEecccCcccCCCCcccccCCceEEEeCCccccccccccccc-cCCcccc--CCCcc
Confidence 456789999999999877899999999999999999999975 2278999999999999999 99 5 6999 99999
Q ss_pred hh--hhhhhccccCCC
Q psy4350 90 VS--FLYDKQGAASEP 103 (107)
Q Consensus 90 ~~--~~~~~~g~~~~p 103 (107)
.+ .++.+.|+.|||
T Consensus 80 ~~~e~~i~a~~~~~H~ 95 (188)
T 1rut_X 80 PASELVMRAQGNVYHL 95 (188)
T ss_dssp CTTSEEEEETTEEECG
T ss_pred ccCcEEEEcCCCEEeC
Confidence 85 467789999997
No 7
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=99.78 E-value=6.2e-20 Score=117.42 Aligned_cols=85 Identities=39% Similarity=0.823 Sum_probs=74.0
Q ss_pred CCCCccccccccccCceEEeecCcccccccccccccCCCCCCCCceeccCCeeccHHHHhh-hCCCCCCCCCCCCcchhh
Q psy4350 14 EEKSSCGGCGQPIIDRFYLLAVDRQWHLGCLQCAHCHVPLHSELSCFSRHGNIYCKQDFFR-YSQARYPDLPIPKTLVSF 92 (107)
Q Consensus 14 ~~~~~C~~C~~~i~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~~C~~~y~~-~~~~~C~~~~C~~~i~~~ 92 (107)
.+.+.|.+|+++|.+.+++.++++.||+.||+|..|+.+|.+. . +.+++++||+.||.+ |+ ++|.. |+++|.+.
T Consensus 4 ~~~~~C~~C~~~I~~~~~~~a~~~~wH~~CF~C~~C~~~L~~~-~-f~~~g~~yC~~~y~~~f~-~~C~~--C~~~I~~~ 78 (169)
T 2rgt_A 4 PEIPMCAGCDQHILDRFILKALDRHWHSKCLKCSDCHVPLAER-C-FSRGESVYCKDDFFKRFG-TKCAA--CQLGIPPT 78 (169)
T ss_dssp ---CBBSSSSSBCCSSSCEECSSCEECTTTSBCTTTCCBCCSC-C-EESSSCEECHHHHHHHHS-CBCTT--TCCBCCTT
T ss_pred CCCCccccCCCccCCcEEEEECCcEEccccCccCCCCCcCCCC-C-cccCCeeeeccccccccc-ccccc--cccccCCC
Confidence 3567899999999988778999999999999999999999886 4 478999999999999 99 79999 99999863
Q ss_pred --hhhhccccCCC
Q psy4350 93 --LYDKQGAASEP 103 (107)
Q Consensus 93 --~~~~~g~~~~p 103 (107)
++.+.|+.||+
T Consensus 79 ~~v~~a~~~~~H~ 91 (169)
T 2rgt_A 79 QVVRRAQDFVYHL 91 (169)
T ss_dssp SEEEEETTEEEEG
T ss_pred cEEEEcCCceEee
Confidence 45788888886
No 8
>1b8t_A Protein (CRP1); LIM domain, muscle differentiation, contractIle; NMR {Gallus gallus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 1ibi_A 1qli_A 1cxx_A 1ctl_A 2o13_A
Probab=99.77 E-value=2.5e-19 Score=116.69 Aligned_cols=88 Identities=18% Similarity=0.331 Sum_probs=77.2
Q ss_pred CCCCCccccccccccCceEEeecCcccccccccccccCCCCCCCCceeccCCeeccHHHHhh-hCCCC------------
Q psy4350 13 PEEKSSCGGCGQPIIDRFYLLAVDRQWHLGCLQCAHCHVPLHSELSCFSRHGNIYCKQDFFR-YSQAR------------ 79 (107)
Q Consensus 13 ~~~~~~C~~C~~~i~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~~C~~~y~~-~~~~~------------ 79 (107)
..+.++|.+|++.|.+.+.+.++++.||+.||+|..|+.+|... .|+.+++++||+.||.+ |+ ++
T Consensus 4 ~~~~~~C~~C~~~I~~~~~v~a~g~~wH~~CF~C~~C~~~L~~~-~~~~~~g~~yC~~cy~~~f~-~~c~~c~~~~g~~~ 81 (192)
T 1b8t_A 4 WGGGKKCGVCQKAVYFAEEVQCEGSSFHKSCFLCMVCKKNLDST-TVAVHGDEIYCKSCYGKKYG-PKGKGKGMGAGTLS 81 (192)
T ss_dssp CCCCEECTTTCCEECSSCCEEETTEEECTTTCBCTTTCCBCCSS-SEEEETTEEEEHHHHHHHHS-CCCCCCCCCCCCCC
T ss_pred CCCCCcCccCCCeecceeEEEeCCceecCCCCcCcccCCcCCCC-eeEecCCEeeChhhhHhhcC-ccccccccccccEe
Confidence 45568899999999877778999999999999999999999887 78999999999999999 98 45
Q ss_pred ------------------------------------CCCCCCCCcch-hhhhhhccccCCCC
Q psy4350 80 ------------------------------------YPDLPIPKTLV-SFLYDKQGAASEPL 104 (107)
Q Consensus 80 ------------------------------------C~~~~C~~~i~-~~~~~~~g~~~~p~ 104 (107)
|.. |+++|. +..+++.|+.||+-
T Consensus 82 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~C~~--C~~~I~~~~~v~a~~~~~H~~ 141 (192)
T 1b8t_A 82 TDKGESLGIKYEEGQSHRPTNPNASRMAQKVGGSDGCPR--CGQAVYAAEKVIGAGKSWHKS 141 (192)
T ss_dssp CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECTT--TSCEECSSSCEEETTEEECTT
T ss_pred cCCCcccccccccccccCCCCcCccccccccCCCCcCCC--CCCEecCcEEEecCCCccchh
Confidence 778 999997 45677889999973
No 9
>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3 g.39.1.3
Probab=99.76 E-value=6.8e-19 Score=98.99 Aligned_cols=70 Identities=19% Similarity=0.446 Sum_probs=63.9
Q ss_pred CccccccccccCceEEeecCcccccccccccccCCCCCCCCceeccCCeeccH-HHHhh-hCCCCCCCCCCCCcch
Q psy4350 17 SSCGGCGQPIIDRFYLLAVDRQWHLGCLQCAHCHVPLHSELSCFSRHGNIYCK-QDFFR-YSQARYPDLPIPKTLV 90 (107)
Q Consensus 17 ~~C~~C~~~i~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~~C~-~~y~~-~~~~~C~~~~C~~~i~ 90 (107)
++|.+|+++|.+.+.+.++++.||+.||+|..|+++|.+. .|+.+++++||+ .||.+ |+ ++|.. |++.+.
T Consensus 1 p~C~~C~~~I~~~~~v~a~~~~~H~~CF~C~~C~~~L~~~-~~~~~~g~~yC~~~cy~~~f~-~~C~~--C~~~~~ 72 (76)
T 1iml_A 1 PKCPKCDKEVYFAERVTSLGKDWHRPCLKCEKCGKTLTSG-GHAEHEGKPYCNHPCYSAMFG-PKGFG--RGGAES 72 (76)
T ss_dssp CBCTTTSSBCCGGGEEEETTEEEETTTCBCTTTCCBCCTT-TEEEETTEEEETTTHHHHHSS-CCCSS--CCCSSS
T ss_pred CcCCCCCCEEECceEEEECCccccCCCCCccccCccCCCC-ceECcCCeEeeCHHHHHHHhC-ccCCC--cCCcee
Confidence 4799999999966778999999999999999999999887 788999999999 69999 99 79999 997765
No 10
>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.76 E-value=1.1e-18 Score=98.20 Aligned_cols=72 Identities=19% Similarity=0.462 Sum_probs=63.7
Q ss_pred CCCCCCCCCccccccccccCceEEeecCcccccccccccccCCCCCCCCceeccCCeeccH-HHHhh-hCCCCCCC
Q psy4350 9 SSPCPEEKSSCGGCGQPIIDRFYLLAVDRQWHLGCLQCAHCHVPLHSELSCFSRHGNIYCK-QDFFR-YSQARYPD 82 (107)
Q Consensus 9 ~~~~~~~~~~C~~C~~~i~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~~C~-~~y~~-~~~~~C~~ 82 (107)
++..+...++|.+|+++|.+.+.+.++++.||+.||+|..|+++|.+. .|+.+++++||+ .||.+ |+ ++|..
T Consensus 2 s~~~~~~~~~C~~C~~~I~~~~~v~a~~~~~H~~CF~C~~C~~~L~~~-~~~~~~g~~yC~~~cy~~~f~-~kc~g 75 (76)
T 2cu8_A 2 SSGSSGMASKCPKCDKTVYFAEKVSSLGKDWHKFCLKCERCSKTLTPG-GHAEHDGKPFCHKPCYATLFG-SGPSS 75 (76)
T ss_dssp CCSCCCCCCBCTTTCCBCCTTTEEEETTEEEETTTCBCSSSCCBCCTT-SCEEETTEEECTTTHHHHHSC-SSCSC
T ss_pred ccccCCCCCCCcCCCCEeECCeEEEECCeEeeCCCCCCCCCCCccCCC-ceEeECCEEecchHHHHHhcc-cccCC
Confidence 345566788999999999977778999999999999999999999877 788999999999 79999 99 68864
No 11
>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.76 E-value=1.5e-18 Score=98.58 Aligned_cols=69 Identities=32% Similarity=0.715 Sum_probs=61.5
Q ss_pred CCCCCCCccccccccccCceEEeecCcccccccccccccCCCCCCCCceeccCCeeccHHHHhh-hCCCCCCC
Q psy4350 11 PCPEEKSSCGGCGQPIIDRFYLLAVDRQWHLGCLQCAHCHVPLHSELSCFSRHGNIYCKQDFFR-YSQARYPD 82 (107)
Q Consensus 11 ~~~~~~~~C~~C~~~i~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~~C~~~y~~-~~~~~C~~ 82 (107)
+...+.++|.+|++.|++.+.+.++++.||+.||+|..|+.+|.+ .|+.+++++||+.||.+ |+ ++|+.
T Consensus 10 ~~~~~~~~C~~C~~~I~~~~~v~a~~~~wH~~CF~C~~C~~~L~~--~~~~~~g~~yC~~~y~~~fg-~~C~~ 79 (80)
T 2dj7_A 10 IKIRGPSHCAGCKEEIKHGQSLLALDKQWHVSCFKCQTCSVILTG--EYISKDGVPYCESDYHAQFG-SGPSS 79 (80)
T ss_dssp CCCSSCSCCTTTCCCCSSSCCEEETTEEECTTTCBCSSSCCBCSS--CCEEETTEEECTTHHHHHTT-CCSTT
T ss_pred cCCCCCCCCcCcCCeeCCCeEEEECCcccccccCCcCcCCCCcCC--CeEEECCEEECHHHHHHHcC-CCCCC
Confidence 345678899999999997777999999999999999999999985 47899999999999999 99 68874
No 12
>1a7i_A QCRP2 (LIM1); LIM domain containing proteins, metal-binding protein, zinc finger; NMR {Coturnix japonica} SCOP: g.39.1.3 g.39.1.3 PDB: 2o10_A
Probab=99.76 E-value=3.3e-19 Score=101.41 Aligned_cols=73 Identities=21% Similarity=0.449 Sum_probs=55.6
Q ss_pred CCCCCccccccccccCceEEeecCcccccccccccccCCCCCCCCceeccCCeeccHHHHhh-hCCCCCCCCCCCCcc
Q psy4350 13 PEEKSSCGGCGQPIIDRFYLLAVDRQWHLGCLQCAHCHVPLHSELSCFSRHGNIYCKQDFFR-YSQARYPDLPIPKTL 89 (107)
Q Consensus 13 ~~~~~~C~~C~~~i~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~~C~~~y~~-~~~~~C~~~~C~~~i 89 (107)
..+.++|..|+++|.+.+.+.+.++.||+.||+|..|+++|... .|+.+++++||+.||.+ |+ ++|.. |+...
T Consensus 4 ~~~~~~C~~C~~~I~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~-~~~~~~~~~yC~~cy~~~f~-~~c~g--cg~g~ 77 (81)
T 1a7i_A 4 WGGGNKCGACGRTVYHAEEVQCDGRSFHRCCFLCMVCRKNLDST-TVAIHDAEVYCKSCYGKKYG-PKGYG--YGQGA 77 (81)
T ss_dssp ----CBCSSSCCBCSSTTEEEETTEEEESSSEECSSSCCEECSS-CCEEETTEEECSHHHHHHCC-------------
T ss_pred CCCCCcCcCcCccccCceeEEeCCcccccccCccCCCCCCCCCC-CeEeeCCEEECHHHHHHHhC-Ccccc--cCCcc
Confidence 45678999999999877778999999999999999999999887 68899999999999999 99 79999 98653
No 13
>2cur_A Skeletal muscle LIM-protein 1; four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.73 E-value=5.8e-18 Score=93.47 Aligned_cols=65 Identities=22% Similarity=0.490 Sum_probs=59.0
Q ss_pred CCCCccccccccccCceEEeecCcccccccccccccCCCCCCCCceeccCCeeccHHHHhh-hCCCCCC
Q psy4350 14 EEKSSCGGCGQPIIDRFYLLAVDRQWHLGCLQCAHCHVPLHSELSCFSRHGNIYCKQDFFR-YSQARYP 81 (107)
Q Consensus 14 ~~~~~C~~C~~~i~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~~C~~~y~~-~~~~~C~ 81 (107)
.+.++|..|++.|.+. .+.++++.||+.||+|..|+++|.+. .|+.+++++||+.||.+ |+ ++|.
T Consensus 3 ~~~~~C~~C~~~I~~~-~~~a~~~~~H~~CF~C~~C~~~L~~~-~~~~~~~~~yC~~cy~~~f~-~~C~ 68 (69)
T 2cur_A 3 SGSSGCVKCNKAITSG-GITYQDQPWHADCFVCVTCSKKLAGQ-RFTAVEDQYYCVDCYKNFVS-GPSS 68 (69)
T ss_dssp CCCCCCSSSCCCCCTT-CEEETTEEECTTTTBCTTTCCBCTTS-CEEECSSCEEEHHHHHHHHT-CSCC
T ss_pred CCcCCCcccCCEeCcc-eEEECccccccCcCEECCCCCCCCCC-ccEeECCEEECHHHhHHHhc-CCCC
Confidence 4668899999999876 48999999999999999999999876 78999999999999999 99 6886
No 14
>1x68_A FHL5 protein; four-and-A-half LIM protein 5, zinc finger domain, AN actin- interacting protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.73 E-value=3.3e-18 Score=96.16 Aligned_cols=69 Identities=23% Similarity=0.533 Sum_probs=61.6
Q ss_pred CCCCccccccccccC---ceEEeecCcccccccccccccCCCCCCCCceeccCCeeccHHHHhh-hCCCCCCCCCCC
Q psy4350 14 EEKSSCGGCGQPIID---RFYLLAVDRQWHLGCLQCAHCHVPLHSELSCFSRHGNIYCKQDFFR-YSQARYPDLPIP 86 (107)
Q Consensus 14 ~~~~~C~~C~~~i~~---~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~~C~~~y~~-~~~~~C~~~~C~ 86 (107)
...++|.+|+++|.+ .+.+.++++.||+.||+|..|+++|.+. .|+.+++++||+.||.+ |+ ++|+. ++
T Consensus 3 ~~~~~C~~C~~~I~~~g~~~~~~a~~~~wH~~CF~C~~C~~~L~~~-~f~~~~g~~yC~~cy~~~f~-~~C~~--~s 75 (76)
T 1x68_A 3 SGSSGCVACSKPISGLTGAKFICFQDSQWHSECFNCGKCSVSLVGK-GFLTQNKEIFCQKCGSGMDT-DISGP--SS 75 (76)
T ss_dssp TCCCCCTTTCCCCCTTTTCCEEEETTEEEEGGGCBCTTTCCBCSSS-CEEEETTEEEETTTTCCCCC-CSSSS--SC
T ss_pred ccCCCCccCCCcccCCCCceeEEECCcccCcccCChhhCCCcCCCC-ceEeECCEEECHHHhhhhhC-CcCCC--CC
Confidence 356789999999995 4568999999999999999999999876 78999999999999999 99 79988 64
No 15
>2d8z_A Four and A half LIM domains 2; skeletal muscle LIM-protein 3, LIM-domain protein DRAL, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.73 E-value=5.7e-18 Score=93.70 Aligned_cols=67 Identities=24% Similarity=0.548 Sum_probs=60.0
Q ss_pred CCCCCccccccccccCceEEeecCcccccccccccccCCCCCCCCceeccCCeeccHHHHhh-hCCCCCCC
Q psy4350 13 PEEKSSCGGCGQPIIDRFYLLAVDRQWHLGCLQCAHCHVPLHSELSCFSRHGNIYCKQDFFR-YSQARYPD 82 (107)
Q Consensus 13 ~~~~~~C~~C~~~i~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~~C~~~y~~-~~~~~C~~ 82 (107)
+...++|.+|+++|.+.. +.++++.||+.||+|..|+++|.+. .|+.+++++||+.||.+ |+ ++|..
T Consensus 2 ~~~~~~C~~C~~~I~~~~-~~a~~~~~H~~CF~C~~C~~~L~~~-~~~~~~~~~yC~~cy~~~f~-~~c~~ 69 (70)
T 2d8z_A 2 SSGSSGCVQCKKPITTGG-VTYREQPWHKECFVCTACRKQLSGQ-RFTARDDFAYCLNCFCDLYA-SGPSS 69 (70)
T ss_dssp CCCCCBCSSSCCBCCSSE-EESSSSEEETTTSBCSSSCCBCTTS-CCEESSSSEECHHHHHHHTC-CCCTT
T ss_pred CCCCCCCcccCCeeccce-EEECccccCCCCCccCCCCCcCCcC-ceEeeCCeEECHHHHHHHhc-cccCC
Confidence 346788999999998764 8999999999999999999999877 78899999999999999 99 68864
No 16
>1j2o_A FLIN2, fusion of rhombotin-2 and LIM domain-binding protein 1; LIM-interaction-domain (LID), metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=99.73 E-value=5.6e-18 Score=102.08 Aligned_cols=69 Identities=32% Similarity=0.679 Sum_probs=61.4
Q ss_pred CCCccccccccccCceEEeecCcccccccccccccCCCCCC-CCceeccCCeeccHHHHhh-hCCCCCCCCCCC
Q psy4350 15 EKSSCGGCGQPIIDRFYLLAVDRQWHLGCLQCAHCHVPLHS-ELSCFSRHGNIYCKQDFFR-YSQARYPDLPIP 86 (107)
Q Consensus 15 ~~~~C~~C~~~i~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~-~~~~~~~~~~~~C~~~y~~-~~~~~C~~~~C~ 86 (107)
..++|.+|+++|.+.+.+.++++.||+.||+|..|+++|.. ...|+.+++++||+.||.+ |+ ++|.. |.
T Consensus 2 ~~~~C~~C~~~I~~~~~~~a~~~~wH~~CF~C~~C~~~L~~~g~~~~~~~g~~yC~~~y~~~f~-~~c~~--c~ 72 (114)
T 1j2o_A 2 SLLTCGGCQQNIGDRYFLKAIDQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLGG-SGGHM--GS 72 (114)
T ss_dssp CCBCBSSSCSCBCSSEEEECSSSEECTTTCCCSSSCSCCCCSSSCCCCBTTBCCCHHHHHHHHT-SCCSS--CB
T ss_pred cCCCCcCCCCeeCCcEEEEECchhHHHhcCcccccCCchhcCCCeeEEECCeeechHHHHHHhC-cccCc--CC
Confidence 35789999999999877899999999999999999999975 2268999999999999999 99 68877 64
No 17
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.73 E-value=8.9e-18 Score=93.34 Aligned_cols=66 Identities=26% Similarity=0.599 Sum_probs=59.7
Q ss_pred CCCccccccccccCc-eEEeecCcccccccccccccCCCCCCCCceeccCCeeccHHHHhh-hCCCCCCC
Q psy4350 15 EKSSCGGCGQPIIDR-FYLLAVDRQWHLGCLQCAHCHVPLHSELSCFSRHGNIYCKQDFFR-YSQARYPD 82 (107)
Q Consensus 15 ~~~~C~~C~~~i~~~-~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~~C~~~y~~-~~~~~C~~ 82 (107)
..++|..|+++|.+. +.+.++++.||+.||+|..|+++|... .|+.+++++||+.||.+ |+ ++|+.
T Consensus 4 ~~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~-~~~~~~~~~yC~~cy~~~f~-~~C~~ 71 (72)
T 1wyh_A 4 GSSGCSACGETVMPGSRKLEYGGQTWHEHCFLCSGCEQPLGSR-SFVPDKGAHYCVPCYENKFA-SGPSS 71 (72)
T ss_dssp CCCBCSSSCCBCCSSSCEECSTTCCEETTTCBCTTTCCBTTTS-CEEEETTEEEEHHHHHHHTS-CCCCC
T ss_pred cCCCCccCCCccccCccEEEECccccCcccCeECCCCCcCCCC-ccCCcCCeEECHHHHHHHcc-CcCCC
Confidence 467899999999964 668999999999999999999999887 78899999999999999 99 78874
No 18
>1x4k_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.72 E-value=1.3e-17 Score=92.71 Aligned_cols=66 Identities=18% Similarity=0.495 Sum_probs=59.7
Q ss_pred CCCccccccccccCc-eEEeecCcccccccccccccCCCCCCCCceeccCCeeccHHHHhh-hCCCCCCC
Q psy4350 15 EKSSCGGCGQPIIDR-FYLLAVDRQWHLGCLQCAHCHVPLHSELSCFSRHGNIYCKQDFFR-YSQARYPD 82 (107)
Q Consensus 15 ~~~~C~~C~~~i~~~-~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~~C~~~y~~-~~~~~C~~ 82 (107)
..++|..|++.|.+. ..+.++++.||+.||+|..|+++|.+. .|+.+++++||+.||.+ |+ ++|+.
T Consensus 4 ~~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~-~~~~~~~~~yC~~cy~~~f~-~~C~~ 71 (72)
T 1x4k_A 4 GSSGCQECKKTIMPGTRKMEYKGSSWHETCFICHRCQQPIGTK-SFIPKDNQNFCVPCYEKQHA-SGPSS 71 (72)
T ss_dssp CCCCBSSSCCCCCSSSCEEEETTEEEETTTTCCSSSCCCCCSS-SEEEETTEEEEHHHHHHHTS-SCCCC
T ss_pred cCCCCccCCCcccCCceEEEECcCeecccCCcccccCCccCCC-ccCccCCeEECHHHHhHHhC-CCCCC
Confidence 457899999999975 468999999999999999999999887 78999999999999999 99 68874
No 19
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.72 E-value=1.2e-17 Score=96.69 Aligned_cols=68 Identities=22% Similarity=0.587 Sum_probs=60.5
Q ss_pred CCCCCCccccccccccCceEEeecCcccccccccccccCCCCCCCCceeccCCeeccHHHHhh-hCCCCCCC
Q psy4350 12 CPEEKSSCGGCGQPIIDRFYLLAVDRQWHLGCLQCAHCHVPLHSELSCFSRHGNIYCKQDFFR-YSQARYPD 82 (107)
Q Consensus 12 ~~~~~~~C~~C~~~i~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~~C~~~y~~-~~~~~C~~ 82 (107)
.....++|.+|++.|.+. .+.++++.||+.||+|..|++.|.+. .|+.+++++||+.||.+ |+ ++|+.
T Consensus 21 ~~~~~~~C~~C~~~I~~~-~v~a~~~~~H~~CF~C~~C~~~L~~~-~f~~~~g~~yC~~cy~~~f~-~~c~s 89 (90)
T 2dar_A 21 AGKRTPMCAHCNQVIRGP-FLVALGKSWHPEEFNCAHCKNTMAYI-GFVEEKGALYCELCYEKFFA-SGPSS 89 (90)
T ss_dssp TTTCCCBBSSSCCBCCSC-EEEETTEEECTTTCBCSSSCCBCSSS-CBEESSSCEECHHHHHHHTS-CCCCC
T ss_pred CCCCCCCCccCCCEecce-EEEECCccccccCCccCCCCCCCCCC-EeEeECCEEECHHHHHHHcC-CCCCC
Confidence 345678899999999765 58899999999999999999999877 78899999999999999 99 78874
No 20
>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.72 E-value=1e-17 Score=93.22 Aligned_cols=65 Identities=26% Similarity=0.611 Sum_probs=57.8
Q ss_pred CCCCccccccccccC---ceEEeecCcccccccccccccCCCCCCCCceeccCCeeccHHHHhh-hCCCCC
Q psy4350 14 EEKSSCGGCGQPIID---RFYLLAVDRQWHLGCLQCAHCHVPLHSELSCFSRHGNIYCKQDFFR-YSQARY 80 (107)
Q Consensus 14 ~~~~~C~~C~~~i~~---~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~~C~~~y~~-~~~~~C 80 (107)
.+.++|.+|+++|.+ ...+.++++.||+.||+|..|+++|.+. .|+.+++++||+.||.+ |+ |++
T Consensus 3 ~~~~~C~~C~~~I~~~~~~~~~~a~~~~wH~~CF~C~~C~~~L~~~-~f~~~~g~~yC~~c~~~~~~-p~~ 71 (72)
T 1x4l_A 3 SGSSGCAGCTNPISGLGGTKYISFEERQWHNDCFNCKKCSLSLVGR-GFLTERDDILCPDCGKDISG-PSS 71 (72)
T ss_dssp SCSCSBTTTTBCCCCSSSCSCEECSSCEECTTTCBCSSSCCBCTTS-CCEECSSSEECHHHHHTCCC-SSC
T ss_pred CCCCCCcCCCccccCCCCcceEEECCcccCcccCEeccCCCcCCCC-ccEeECCEEEChhHcCcccC-CCC
Confidence 467889999999985 4568999999999999999999999876 78889999999999999 99 565
No 21
>2d8y_A Eplin protein; LIM domain, epithelial protein LOST in neoplasm, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.70 E-value=5.8e-17 Score=93.97 Aligned_cols=67 Identities=27% Similarity=0.601 Sum_probs=61.0
Q ss_pred CCCCccccccccccCceEEeecCcccccccccccccCCCCCCCCceeccCCeeccHHHHhh-hCCCCCCC
Q psy4350 14 EEKSSCGGCGQPIIDRFYLLAVDRQWHLGCLQCAHCHVPLHSELSCFSRHGNIYCKQDFFR-YSQARYPD 82 (107)
Q Consensus 14 ~~~~~C~~C~~~i~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~~C~~~y~~-~~~~~C~~ 82 (107)
....+|..|++.|.+.+.+.++++.||+.||+|..|.++|... .|+.+++++||+.||.+ |+ ++|.-
T Consensus 13 ~~~~~C~~C~~~I~~~~~v~a~~~~~H~~CF~C~~C~~~L~~~-~~~~~~g~~yC~~~y~~~f~-~kc~~ 80 (91)
T 2d8y_A 13 PARETCVECQKTVYPMERLLANQQVFHISCFRCSYCNNKLSLG-TYASLHGRIYCKPHFNQLFK-SKGNY 80 (91)
T ss_dssp SSSCBCTTTCCBCCTTSEEECSSSEEETTTCBCTTTCCBCCTT-TCCCSSSCCCCHHHHHHHSC-CCSCC
T ss_pred CCCCcCccCCCccCCceeEEECCCEECCCCCeeCCCCCCCCCC-CcEeECCEEECHHHHHHHhC-CCcCc
Confidence 4578899999999987778999999999999999999999887 68899999999999999 99 68874
No 22
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.70 E-value=4.5e-17 Score=90.09 Aligned_cols=66 Identities=26% Similarity=0.560 Sum_probs=58.5
Q ss_pred CCCCCccccccccccCceEEeecCcccccccccccccCCCCCCCCceeccCCeeccHHHHhh-hCCCCCC
Q psy4350 13 PEEKSSCGGCGQPIIDRFYLLAVDRQWHLGCLQCAHCHVPLHSELSCFSRHGNIYCKQDFFR-YSQARYP 81 (107)
Q Consensus 13 ~~~~~~C~~C~~~i~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~~C~~~y~~-~~~~~C~ 81 (107)
+++..+|..|++.|.+. .+.++++.||++||+|..|+++|.+. .|+.+++++||+.||.+ |+ ++.+
T Consensus 2 s~~~~~C~~C~~~I~~~-~~~a~~~~~H~~CF~C~~C~~~L~~~-~f~~~~g~~yC~~c~~~~~~-~~~~ 68 (70)
T 2d8x_A 2 SSGSSGCHQCGEFIIGR-VIKAMNNSWHPECFRCDLCQEVLADI-GFVKNAGRHLCRPCHNREKA-SGPS 68 (70)
T ss_dssp CCCSSBCSSSCCBCCSC-CEEETTEEECTTTSBCSSSCCBCSSS-CCEEETTEEECHHHHHHHHC-CCSC
T ss_pred CCCCCcCccCCCEecce-EEEECcccccccCCEeCCCCCcCCCC-ccEeECCeEECHHHhhhhcC-CCCC
Confidence 35678999999999975 58999999999999999999999987 68889999999999999 98 4544
No 23
>1g47_A Pinch protein; LIM domain, Zn finger, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.70 E-value=1.9e-17 Score=93.09 Aligned_cols=68 Identities=18% Similarity=0.448 Sum_probs=58.1
Q ss_pred CCCCCCccccccccccC-ceEEeecCcccccccccccccCCCCCCCCceeccCCeeccHHHHhh-hCCCCCC
Q psy4350 12 CPEEKSSCGGCGQPIID-RFYLLAVDRQWHLGCLQCAHCHVPLHSELSCFSRHGNIYCKQDFFR-YSQARYP 81 (107)
Q Consensus 12 ~~~~~~~C~~C~~~i~~-~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~~C~~~y~~-~~~~~C~ 81 (107)
......+|.+|++.|.+ ..++.+.++.||+.||+|..|+++|... .|+.+++++||+.||.+ |+ ++|.
T Consensus 7 ~~~~~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~-~~~~~~g~~yC~~~y~~~f~-~~C~ 76 (77)
T 1g47_A 7 NALASATCERCKGGFAPAEKIVNSNGELYHEQCFVCAQCFQQFPEG-LFYEFEGRKYCEHDFQMLFA-PCWI 76 (77)
T ss_dssp SCCCCCBCSSSCCBCCSTTTCEEETTEEECTTTCCCTTTCCCCGGG-CSEEETTEEECHHHHHHHCC-CC--
T ss_pred cCCCCCCchhcCCccCCCceEEEeCccEeccccCeECCCCCCCCCC-CeEeECCeEeCHHHHHHHhh-cccC
Confidence 33456889999999985 4447899999999999999999999887 68899999999999999 99 6885
No 24
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.69 E-value=1.7e-17 Score=93.90 Aligned_cols=69 Identities=23% Similarity=0.490 Sum_probs=59.8
Q ss_pred CCCCCCCCccccccccccCceEEeecCcccccccccccccCCCCCCCCceeccCCeeccHHHHhh-hCCCCCC
Q psy4350 10 SPCPEEKSSCGGCGQPIIDRFYLLAVDRQWHLGCLQCAHCHVPLHSELSCFSRHGNIYCKQDFFR-YSQARYP 81 (107)
Q Consensus 10 ~~~~~~~~~C~~C~~~i~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~~C~~~y~~-~~~~~C~ 81 (107)
.+.....++|.+|++.|.+. .+.++++.||+.||+|..|++.|.+. .|+.+++++||+.||.+ |+ +++.
T Consensus 9 ~~~~~~~~~C~~C~~~I~~~-~~~a~~~~~H~~CF~C~~C~~~L~~~-~~~~~~g~~yC~~cy~~~~~-p~g~ 78 (79)
T 1x62_A 9 IGNAQKLPMCDKCGTGIVGV-FVKLRDRHRHPECYVCTDCGTNLKQK-GHFFVEDQIYCEKHARERVS-GPSS 78 (79)
T ss_dssp CCCCCCCCCCSSSCCCCCSS-CEECSSCEECTTTTSCSSSCCCHHHH-CCEESSSCEECHHHHHHHHS-SCCC
T ss_pred CCCCCCCCccccCCCCccCc-EEEECcceeCcCcCeeCCCCCCCCCC-CeEeECCEEECHHHHHHHhC-CCCC
Confidence 33456678999999999986 58999999999999999999999765 68889999999999999 99 5643
No 25
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM domain 3, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=99.69 E-value=7.3e-17 Score=93.18 Aligned_cols=67 Identities=25% Similarity=0.553 Sum_probs=58.8
Q ss_pred CCCCCCccccccccccCceEEeecCcccccccccccccCCCCCCCCceeccCCeeccHHHHhh-hCCCCCC
Q psy4350 12 CPEEKSSCGGCGQPIIDRFYLLAVDRQWHLGCLQCAHCHVPLHSELSCFSRHGNIYCKQDFFR-YSQARYP 81 (107)
Q Consensus 12 ~~~~~~~C~~C~~~i~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~~C~~~y~~-~~~~~C~ 81 (107)
......+|.+|++.|.+. .+.++++.||+.||+|..|++.|... .|+.+++++||+.||.+ |+ +++.
T Consensus 21 ~~~~~~~C~~C~~~I~~~-~~~a~~~~~H~~CF~C~~C~~~L~~~-~~~~~~g~~yC~~~y~~~f~-p~~~ 88 (89)
T 1x64_A 21 SAQRMPLCDKCGSGIVGA-VVKARDKYRHPECFVCADCNLNLKQK-GYFFVEGELYCETHARARTS-GPSS 88 (89)
T ss_dssp CCCSCCBCTTTCCBCCSC-CEESSSCEECTTTCCCSSSCCCTTTS-CCEEETTEEECHHHHHHHSS-SCCC
T ss_pred CCCcCCCcccCCCEeccc-EEEECCceECccCCEecCCCCCCCCC-CeEeECCEEECHHHHHHHhC-CCCC
Confidence 335567899999999985 48999999999999999999999887 68888999999999999 99 5664
No 26
>1nyp_A Pinch protein; LIM domain, protein recognition, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 PDB: 1u5s_B
Probab=99.69 E-value=3.4e-17 Score=89.61 Aligned_cols=60 Identities=30% Similarity=0.794 Sum_probs=55.0
Q ss_pred CCCccccccccccCceEEeecCcccccccccccccCCCCCCCCceeccCCeeccHHHHhh-hC
Q psy4350 15 EKSSCGGCGQPIIDRFYLLAVDRQWHLGCLQCAHCHVPLHSELSCFSRHGNIYCKQDFFR-YS 76 (107)
Q Consensus 15 ~~~~C~~C~~~i~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~~C~~~y~~-~~ 76 (107)
..++|.+|+++|.+. .+.++++.||+.||+|..|+++|.+. .|+.+++++||+.||.+ |+
T Consensus 4 ~~~~C~~C~~~I~~~-~~~a~~~~~H~~CF~C~~C~~~L~~~-~~~~~~g~~yC~~~y~~~f~ 64 (66)
T 1nyp_A 4 GVPICGACRRPIEGR-VVNAMGKQWHVEHFVCAKCEKPFLGH-RHYERKGLAYCETHYNQLFG 64 (66)
T ss_dssp CCCEETTTTEECCSC-EECCTTSBEETTTCBCTTTCCBCSSS-CCEEETTEEECHHHHHHHCS
T ss_pred CCCCCcccCCEecce-EEEECccccccCcCEECCCCCCCCCC-ceEeECCcEECHHHHHHHhC
Confidence 467899999999954 68999999999999999999999876 78999999999999999 98
No 27
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.68 E-value=6.1e-17 Score=89.96 Aligned_cols=66 Identities=27% Similarity=0.754 Sum_probs=57.9
Q ss_pred CCCCccccccccccCc-eEEeecCcccccccccccccCCCCCCCCceeccCCeeccHHHHhh-hCCCCCCC
Q psy4350 14 EEKSSCGGCGQPIIDR-FYLLAVDRQWHLGCLQCAHCHVPLHSELSCFSRHGNIYCKQDFFR-YSQARYPD 82 (107)
Q Consensus 14 ~~~~~C~~C~~~i~~~-~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~~C~~~y~~-~~~~~C~~ 82 (107)
.+.++|.+|++.|.+. ..+.++++.||+.||+|..|+++|.+. .|+.+++++||+.||.+ |+ +|..
T Consensus 3 ~~~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~-~~~~~~~~~yC~~cy~~~~~--~~~~ 70 (72)
T 1x61_A 3 SGSSGCGGCGEDVVGDGAGVVALDRVFHVGCFVCSTCRAQLRGQ-HFYAVERRAYCEGCYVATLE--SGPS 70 (72)
T ss_dssp SCCCCCSSSCSCCCSSSCCEECSSSEECTTTCBCSSSCCBCTTS-CEEESSSCEEEHHHHHHHHH--TCSS
T ss_pred CCCCCCccCCCccCCCceEEEECCCeEcccCCcccccCCcCCcC-cCEeeCCeEECHHHHHHHHc--cCCC
Confidence 4578899999999864 468999999999999999999999766 78999999999999999 87 5554
No 28
>1b8t_A Protein (CRP1); LIM domain, muscle differentiation, contractIle; NMR {Gallus gallus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 1ibi_A 1qli_A 1cxx_A 1ctl_A 2o13_A
Probab=99.68 E-value=5.1e-17 Score=105.72 Aligned_cols=71 Identities=24% Similarity=0.626 Sum_probs=65.1
Q ss_pred CCCccccccccccCceEEeecCcccccccccccccCCCCCCCCceeccCCeeccHHHHhh-hCCCCCCCCCCCCcc
Q psy4350 15 EKSSCGGCGQPIIDRFYLLAVDRQWHLGCLQCAHCHVPLHSELSCFSRHGNIYCKQDFFR-YSQARYPDLPIPKTL 89 (107)
Q Consensus 15 ~~~~C~~C~~~i~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~~C~~~y~~-~~~~~C~~~~C~~~i 89 (107)
+.++|.+|++.|.+.+.+.++++.||+.||+|..|+++|... .|+.+++++||+.||.+ |+ ++|.. |++++
T Consensus 114 ~~~~C~~C~~~I~~~~~v~a~~~~~H~~CF~C~~C~~~L~~~-~~~~~~g~~yC~~cy~~~f~-~kc~~--C~~~~ 185 (192)
T 1b8t_A 114 GSDGCPRCGQAVYAAEKVIGAGKSWHKSCFRCAKCGKSLEST-TLADKDGEIYCKGCYAKNFG-PKGFG--FGQGA 185 (192)
T ss_dssp CCEECTTTSCEECSSSCEEETTEEECTTTCBCTTTCCBCCSS-SEEEETTEEEEHHHHHHHTC-CCCCC--CCCCC
T ss_pred CCCcCCCCCCEecCcEEEecCCCccchhcCCccccCCCCCCC-cccccCCEEeCHHHHHHhcC-CcCCC--CCCcc
Confidence 356799999999977778999999999999999999999877 68899999999999999 99 79999 99985
No 29
>1x3h_A Leupaxin; paxillin family, protein-protein interaction, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.67 E-value=7.8e-17 Score=91.22 Aligned_cols=64 Identities=28% Similarity=0.820 Sum_probs=58.4
Q ss_pred CCccccccccccCceEEeecCcccccccccccccCCCCCCCCceeccCCeeccHHHHhh-hCCCCCCC
Q psy4350 16 KSSCGGCGQPIIDRFYLLAVDRQWHLGCLQCAHCHVPLHSELSCFSRHGNIYCKQDFFR-YSQARYPD 82 (107)
Q Consensus 16 ~~~C~~C~~~i~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~~C~~~y~~-~~~~~C~~ 82 (107)
.++|.+|+++|.+. .+.++++.||+.||+|..|+++|.+. .++.+++++||+.||.+ |+ ++|+.
T Consensus 15 ~~~C~~C~~~I~~~-~v~a~~~~~H~~CF~C~~C~~~L~~~-~~~~~~~~~yC~~~y~~~f~-~~C~~ 79 (80)
T 1x3h_A 15 SPKCGGCNRPVLEN-YLSAMDTVWHPECFVCGDCFTSFSTG-SFFELDGRPFCELHYHHRRG-SGPSS 79 (80)
T ss_dssp SCBCTTTCCBCCSS-CEEETTEEECTTTCBCSSSCCBSCSS-CCEESSSCEECHHHHHHHHS-SSCCC
T ss_pred CCccccCCCeecce-eEEECCCeEecCcCChhhCCCCCCCC-cEEeECCEEECHHHHHHHcC-CCCCC
Confidence 57899999999985 48999999999999999999999887 68889999999999999 99 68874
No 30
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains; zinc finger protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.67 E-value=4.6e-17 Score=92.80 Aligned_cols=66 Identities=21% Similarity=0.413 Sum_probs=57.9
Q ss_pred CCCCCCCCccccccccccCceEEeecCcccccccccccccCCCCCCCCcee--ccCCeeccHHHHhh-hC
Q psy4350 10 SPCPEEKSSCGGCGQPIIDRFYLLAVDRQWHLGCLQCAHCHVPLHSELSCF--SRHGNIYCKQDFFR-YS 76 (107)
Q Consensus 10 ~~~~~~~~~C~~C~~~i~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~--~~~~~~~C~~~y~~-~~ 76 (107)
.+...+..+|.+|++.|++.+.+.++++.||..||+|..|++.|... .|. .+++++||+.||.+ |+
T Consensus 9 ~~~~~~~~~C~~C~~~I~~~e~v~a~~~~wH~~CF~C~~C~~~L~~~-~~~~~~~~g~~yC~~~y~~~~~ 77 (82)
T 2co8_A 9 HQEAGAGDLCALCGEHLYVLERLCVNGHFFHRSCFRCHTCEATLWPG-GYEQHPGDGHFYCLQHLPQTDS 77 (82)
T ss_dssp CCCCCSSCBCSSSCCBCCTTTBCCBTTBCCBTTTCBCSSSCCBCCTT-SEECCTTTCCCEETTTCCCCCC
T ss_pred CcCCCCCCCCcccCCCcccceEEEECCCeeCCCcCEEcCCCCCcCCC-ceeEeCcCCEEEChHHHHhhhc
Confidence 44556778999999999887778899999999999999999999887 555 57999999999998 77
No 31
>2cuq_A Four and A half LIM domains 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.67 E-value=1.1e-16 Score=90.66 Aligned_cols=65 Identities=25% Similarity=0.575 Sum_probs=58.9
Q ss_pred CCCccccccccccCceEEeecCcccccccccccccCCCCCCCCceeccCCeeccHHHHhh-hCCCCCCC
Q psy4350 15 EKSSCGGCGQPIIDRFYLLAVDRQWHLGCLQCAHCHVPLHSELSCFSRHGNIYCKQDFFR-YSQARYPD 82 (107)
Q Consensus 15 ~~~~C~~C~~~i~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~~C~~~y~~-~~~~~C~~ 82 (107)
..++|.+|+++|.+. .+.++++.||+.||+|..|+++|.+. .|+.+++++||+.||.+ |+ ++|+.
T Consensus 14 ~~~~C~~C~~~I~~~-~v~a~~~~~H~~CF~C~~C~~~L~~~-~~~~~~~~~yC~~cy~~~f~-~~c~s 79 (80)
T 2cuq_A 14 FAPRCARCSKTLTQG-GVTYRDQPWHRECLVCTGCQTPLAGQ-QFTSRDEDPYCVACFGELFA-SGPSS 79 (80)
T ss_dssp SSCCCTTTCCCCCSC-CEESSSSEECTTTCBCSSSCCBCTTC-CEEECSSSEEEHHHHHHHTT-CSTTC
T ss_pred cCCcCCCCCCEecCc-EEEECCchhhhhhCCcccCCCcCCCC-eeEeECCEEECHHHHHHHcC-CCCCC
Confidence 457899999999886 58999999999999999999999876 78999999999999999 99 68874
No 32
>2l4z_A DNA endonuclease RBBP8, LIM domain transcription LMO4; protein-protein interaction, LIM-interaction DOM LMO4, RBBP8/CTIP, LIM-only protein; HET: DNA; NMR {Homo sapiens}
Probab=99.67 E-value=8e-17 Score=98.26 Aligned_cols=64 Identities=38% Similarity=0.903 Sum_probs=56.5
Q ss_pred CCCCCccccccccccCceEEeecCcccccccccccccCCCCCC-CCceeccCCeeccHHHHhh-hC
Q psy4350 13 PEEKSSCGGCGQPIIDRFYLLAVDRQWHLGCLQCAHCHVPLHS-ELSCFSRHGNIYCKQDFFR-YS 76 (107)
Q Consensus 13 ~~~~~~C~~C~~~i~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~-~~~~~~~~~~~~C~~~y~~-~~ 76 (107)
....++|.+|+++|.+.+++.++++.||+.||+|..|+++|.. ...|+.+++++||+.||.+ ||
T Consensus 58 ~~~~~~C~~C~~~I~~~~~v~a~~~~wH~~CF~C~~C~~~L~~~g~~f~~~dg~~yC~~cy~~~Fg 123 (123)
T 2l4z_A 58 GLSWKRCAGCGGKIADRFLLYAMDSYWHSRCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFG 123 (123)
T ss_dssp CSSCSBBSSSSSBCCSSSEEEETTEEEETTTSBCTTTCCBGGGTTCCCBCSSSCCBCHHHHHHHCC
T ss_pred CccCCcCcCCCCCcCCcEEEEeCCcEEcccccCcCcCCCcccccCCceEEECCEEeCHHHhhhhcC
Confidence 3456789999999999877899999999999999999999962 2268999999999999998 86
No 33
>2dlo_A Thyroid receptor-interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.67 E-value=1.2e-16 Score=90.73 Aligned_cols=65 Identities=32% Similarity=0.712 Sum_probs=57.7
Q ss_pred CCCccccccccccCceEEeecCcccccccccccccCCCCCCCCceecc-CCeeccHHHHhh-hCCCCCCC
Q psy4350 15 EKSSCGGCGQPIIDRFYLLAVDRQWHLGCLQCAHCHVPLHSELSCFSR-HGNIYCKQDFFR-YSQARYPD 82 (107)
Q Consensus 15 ~~~~C~~C~~~i~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~-~~~~~C~~~y~~-~~~~~C~~ 82 (107)
..++|.+|+++|.+. .+.++++.||+.||+|..|+++|.+. .|... ++++||+.||.+ |+ ++|+.
T Consensus 14 ~~~~C~~C~~~I~~~-~~~a~~~~~H~~CF~C~~C~~~L~~~-~f~~~~~g~~yC~~cy~~~f~-~~C~~ 80 (81)
T 2dlo_A 14 TLEKCATCSQPILDR-ILRAMGKAYHPGCFTCVVCHRGLDGI-PFTVDATSQIHCIEDFHRKFA-SGPSS 80 (81)
T ss_dssp SCCBCTTTCCBCCSC-CEEETTEEECTTTCBCSSSCCBCTTS-CEECCTTCCCEEHHHHHHHTT-SSSCC
T ss_pred CCCccccCCCeecce-eEEECCccccHHhcCcccCCCccCCC-eeEECCCCEEECHHHHHHHhc-CcCCC
Confidence 567899999999976 58999999999999999999999876 67655 789999999999 99 68875
No 34
>2cor_A Pinch protein; LIM domain, particularly interesting NEW Cys- His protein, LIM and senescent cell antigen-like domains 1, structural genomics; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.66 E-value=2.6e-16 Score=89.09 Aligned_cols=66 Identities=20% Similarity=0.337 Sum_probs=57.2
Q ss_pred CCCCCCccccccccccCceEEeecCcccccccccccccCCCCCCCCceeccCCeeccHHHHhh-hCCCCCC
Q psy4350 12 CPEEKSSCGGCGQPIIDRFYLLAVDRQWHLGCLQCAHCHVPLHSELSCFSRHGNIYCKQDFFR-YSQARYP 81 (107)
Q Consensus 12 ~~~~~~~C~~C~~~i~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~~C~~~y~~-~~~~~C~ 81 (107)
...+.++|.+|++.|.+. .+.++++.||+.||+|..|+++|.+. .| .+++++||+.||.+ |+ |.+.
T Consensus 11 ~~~~~~~C~~C~~~I~~~-~v~a~~~~~H~~CF~C~~C~~~L~~~-~f-~~~g~~yC~~cy~~~f~-p~~s 77 (79)
T 2cor_A 11 RGLGKYICQKCHAIIDEQ-PLIFKNDPYHPDHFNCANCGKELTAD-AR-ELKGELYCLPCHDKMGV-SGPS 77 (79)
T ss_dssp CCCCCCBCTTTCCBCCSC-CCCCSSSCCCTTTSBCSSSCCBCCTT-CE-EETTEEECHHHHHTTSC-CSSC
T ss_pred hccCCCCCccCCCEecce-EEEECcceeCCCCCEeCCCCCccCCC-CE-eECCEEeCHHHHHHhCC-CCCC
Confidence 445678899999999965 48999999999999999999999876 44 88999999999999 98 5654
No 35
>2ehe_A Four and A half LIM domains 3; FHL-3, skeletal muscle LIM- protein 2, SLIM 2, FHL3, SLIM2, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.65 E-value=5.7e-17 Score=92.22 Aligned_cols=66 Identities=26% Similarity=0.571 Sum_probs=58.6
Q ss_pred CCCcccccccccc-CceEEeecCcccccccccccccCCCCCCCCceeccCCeeccHHHHhh-hCCCCCCC
Q psy4350 15 EKSSCGGCGQPII-DRFYLLAVDRQWHLGCLQCAHCHVPLHSELSCFSRHGNIYCKQDFFR-YSQARYPD 82 (107)
Q Consensus 15 ~~~~C~~C~~~i~-~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~~C~~~y~~-~~~~~C~~ 82 (107)
..++|..|+++|. +..++.++++.||+.||+|..|+++|.+. .|+.+++++||+.||.+ |+ ++|..
T Consensus 14 ~~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~-~f~~~~~~~~C~~c~~~~~~-~~C~~ 81 (82)
T 2ehe_A 14 FANTCAECQQLIGHDSRELFYEDRHFHEGCFRCCRCQRSLADE-PFTCQDSELLCNDCYCSAFS-SGPSS 81 (82)
T ss_dssp CSCBCTTTCCBCCSSCCBCCCSSCCCBTTTSBCTTTCCBCSSC-CEEEETTEEEETTTSSCCGG-GSSCC
T ss_pred cCCcCccCCCccccCcEEEEeCCccccccCCeecCCCCccCCC-ccEeeCCEEECHHHHhhhcC-CCCCC
Confidence 4568999999998 45557889999999999999999999877 78999999999999999 99 68874
No 36
>1x63_A Skeletal muscle LIM-protein 1; LIM domain, four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.65 E-value=2.4e-16 Score=89.58 Aligned_cols=66 Identities=20% Similarity=0.531 Sum_probs=58.2
Q ss_pred CCCccccccccccCce-EEeecCcccccccccccccCCCCCCCCceeccCCeeccHHHHhh-hCCCCCCC
Q psy4350 15 EKSSCGGCGQPIIDRF-YLLAVDRQWHLGCLQCAHCHVPLHSELSCFSRHGNIYCKQDFFR-YSQARYPD 82 (107)
Q Consensus 15 ~~~~C~~C~~~i~~~~-~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~~C~~~y~~-~~~~~C~~ 82 (107)
..++|.+|++.|.+.+ .+.++++.||+.||+|..|+++|... .|+.+++++||+.||.+ |+ +++..
T Consensus 14 ~~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~-~~~~~~~~~yC~~cy~~~f~-~~~~~ 81 (82)
T 1x63_A 14 DSPKCKGCFKAIVAGDQNVEYKGTVWHKDCFTCSNCKQVIGTG-SFFPKGEDFYCVTCHETKFA-SGPSS 81 (82)
T ss_dssp CSCBCSSSCCBCCSSSCEEECSSCEEETTTCCCSSSCCCCTTS-CEEEETTEEEEHHHHHHHTS-CCCSC
T ss_pred cCCcCccCCcccccCceEEEECccccccccCchhhCCCccCCC-ccEeeCCEEECHHHHHHHhC-CCCCC
Confidence 3578999999998543 48999999999999999999999887 78899999999999999 99 57653
No 37
>3f6q_B LIM and senescent cell antigen-like-containing domain protein 1; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 2kbx_B 3ixe_B
Probab=99.61 E-value=5.4e-16 Score=85.84 Aligned_cols=62 Identities=19% Similarity=0.501 Sum_probs=55.1
Q ss_pred CCCCccccccccccCceE-EeecCcccccccccccccCCCCCCCCceeccCCeeccHHHHhh-hC
Q psy4350 14 EEKSSCGGCGQPIIDRFY-LLAVDRQWHLGCLQCAHCHVPLHSELSCFSRHGNIYCKQDFFR-YS 76 (107)
Q Consensus 14 ~~~~~C~~C~~~i~~~~~-~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~~C~~~y~~-~~ 76 (107)
....+|.+|++.|.+.+. +.+.++.||+.||+|..|+++|... .++.+++++||+.||.+ |+
T Consensus 9 ~~~~~C~~C~~~i~~~e~~~~~~~~~~H~~CF~C~~C~~~L~~~-~~~~~~g~~yC~~~y~~lf~ 72 (72)
T 3f6q_B 9 SASATCERCKGGFAPAEKIVNSNGELYHEQCFVCAQCFQQFPEG-LFYEFEGRKYCEHDFQMLFA 72 (72)
T ss_dssp CTTCBCTTTCCBCCTTCEEEEETTEEEETTTSSCTTTCCCCGGG-CCEEETTEEECHHHHHHHTC
T ss_pred cCCccchhcCccccCCceEEEeCcCeeCcCCCcccCCCCCCCCC-CeEeECCeEeCHHHHHHhhC
Confidence 456789999999997654 5799999999999999999999887 68899999999999998 75
No 38
>1wig_A KIAA1808 protein; LIM domain, zinc finger, metal-binding protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.60 E-value=6.4e-16 Score=86.20 Aligned_cols=62 Identities=19% Similarity=0.378 Sum_probs=54.7
Q ss_pred CCCCccccccccccCceEEeecCcccccccccccccCCCCCCCCceeccCCeeccHHHHhh-hC
Q psy4350 14 EEKSSCGGCGQPIIDRFYLLAVDRQWHLGCLQCAHCHVPLHSELSCFSRHGNIYCKQDFFR-YS 76 (107)
Q Consensus 14 ~~~~~C~~C~~~i~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~~C~~~y~~-~~ 76 (107)
...++|.+|+++|.+. .+.++++.||+.||+|..|+++|.....|+..++++||..||.+ ++
T Consensus 3 ~~~~~C~~C~~~I~~~-~v~a~~~~wH~~CF~C~~C~~~L~~~~~f~~~~~~~yC~~C~~~~~~ 65 (73)
T 1wig_A 3 SGSSGCDSCEKYITGR-VLEAGEKHYHPSCALCVRCGQMFAEGEEMYLQGSSIWHPACRQAART 65 (73)
T ss_dssp CSCCSCSSSCCCCSSC-CBCCSSCCBCTTTSCCSSSCCCCCSSCCCEEETTEEECTTHHHHTSS
T ss_pred cCcCCcccCCCEecCe-eEEeCCCCCCCCcCEeCCCCCCCCCCCeeEeeCCEEEChHHChHhhc
Confidence 4567899999999985 48999999999999999999999833378899999999999998 66
No 39
>2l3k_A Rhombotin-2, linker, LIM domain-binding protein 1; LMO2(LIM2)-LDB1(LID), chimera, fusion protein, oncoprotein; NMR {Mus musculus} PDB: 2l6y_B 2l6z_C
Probab=99.60 E-value=3e-16 Score=95.58 Aligned_cols=73 Identities=19% Similarity=0.340 Sum_probs=62.2
Q ss_pred CccccccccccCce-EEeecCcccccccccccccCCCCCCCCceeccCCeeccHHHHhh-hCCCCCCCCCCCCcchhh
Q psy4350 17 SSCGGCGQPIIDRF-YLLAVDRQWHLGCLQCAHCHVPLHSELSCFSRHGNIYCKQDFFR-YSQARYPDLPIPKTLVSF 92 (107)
Q Consensus 17 ~~C~~C~~~i~~~~-~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~~C~~~y~~-~~~~~C~~~~C~~~i~~~ 92 (107)
.+|..|++.|...+ ++.++++.||..||+|..|++.|.....|+..++++||+.||.+ |+ ++|+. ++..+.+.
T Consensus 9 ~~C~~C~~~I~~~e~~~~a~~~~~H~~CF~C~~C~~~L~~g~~f~~~~g~~yC~~cy~~~~~-~~~~~--~~~~~~~~ 83 (123)
T 2l3k_A 9 GLCASCDKRIRAYEMTMRVKDKVYHLECFKCAACQKHFSVGDRYLLINSDIVCEQDIYEWTK-INGGS--GGSGGSGG 83 (123)
T ss_dssp CCCSSSSCCCCTTCCCCCCSSCCCCTTTCBCTTTCCBCCTTCEEEECSSSEEEGGGHHHHHH-HHTCC--CCCCSCCS
T ss_pred CcccCCCCeecCCceEEEECCcccccccCccccCCCCCCCCCcEEeeCCEEEcHHHhHHHhc-cccCC--CCCCCccC
Confidence 47999999998643 46899999999999999999999543368999999999999999 99 68988 87776543
No 40
>1x6a_A LIMK-2, LIM domain kinase 2; LIM-kinase 2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.59 E-value=1.9e-15 Score=85.68 Aligned_cols=65 Identities=20% Similarity=0.474 Sum_probs=55.4
Q ss_pred CCCccccccccccCceEEeecCcccccccccccccCCCCCCCCcee-ccCCeeccHHHHhh-hCCCCCC
Q psy4350 15 EKSSCGGCGQPIIDRFYLLAVDRQWHLGCLQCAHCHVPLHSELSCF-SRHGNIYCKQDFFR-YSQARYP 81 (107)
Q Consensus 15 ~~~~C~~C~~~i~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~-~~~~~~~C~~~y~~-~~~~~C~ 81 (107)
..++|.+|+++|.+. .+.++++.||+.||+|..|+++|.....|. .+++++||+.||.+ |+ +.++
T Consensus 14 ~~~~C~~C~~~I~~~-~~~a~~~~~H~~CF~C~~C~~~L~~g~~f~~~~~~~~~C~~c~~~~~~-~~~s 80 (81)
T 1x6a_A 14 FGEFCHGCSLLMTGP-FMVAGEFKYHPECFACMSCKVIIEDGDAYALVQHATLYCGKCHNEVVS-GPSS 80 (81)
T ss_dssp SSCBCTTTCCBCCSC-CBCCTTCCBCTTSCBCTTTCCBCCTTSCEEECSSSCEEEHHHHHHHHC-TTSC
T ss_pred cCCcCccCCCCcCce-EEEECCceeccccCCccCCCCccCCCCcEEEeeCCEEECHHHHHHHhc-CCCC
Confidence 456899999999954 589999999999999999999997533676 58999999999999 99 4554
No 41
>2egq_A FHL1 protein; LIM domain, four and A half LIM domains protein 1, skeletal muscle LIM- protein 1, SLIM 1, structural genomics NPPSFA; NMR {Homo sapiens}
Probab=99.57 E-value=3.2e-15 Score=83.90 Aligned_cols=59 Identities=24% Similarity=0.595 Sum_probs=52.8
Q ss_pred CCCccccccccccC----ceEEeecCcccccccccccccCCCCCCCCceeccCCeeccHHHHhh
Q psy4350 15 EKSSCGGCGQPIID----RFYLLAVDRQWHLGCLQCAHCHVPLHSELSCFSRHGNIYCKQDFFR 74 (107)
Q Consensus 15 ~~~~C~~C~~~i~~----~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~~C~~~y~~ 74 (107)
..++|.+|+++|.+ .+.+.++++.||+.||+|..|+++|.+. .|+.+++++||+.||.+
T Consensus 14 ~~~~C~~C~~~I~~~g~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~-~f~~~~~~~yC~~cy~~ 76 (77)
T 2egq_A 14 VAKKCAGCKNPITGFGKGSSVVAYEGQSWHDYCFHCKKCSVNLANK-RFVFHQEQVYCPDCAKK 76 (77)
T ss_dssp CCCCCSSSCCCCCCCSSCCCEEEETTEEEETTTCBCSSSCCBCTTS-CCCEETTEECCHHHHHH
T ss_pred hCccCcccCCcccCCCCCceeEEECcceeCcccCEehhcCCCCCCC-ccEeECCEEEChHHhcc
Confidence 35789999999994 4668999999999999999999999877 78899999999999964
No 42
>2iyb_E Testin, TESS, TES; LIM domain, SH3-binding, tumour supressor LIM domain EVH1 DO cell motility, phosphorylation, cytoskeleton; 2.35A {Homo sapiens}
Probab=99.55 E-value=3.6e-15 Score=81.33 Aligned_cols=58 Identities=22% Similarity=0.501 Sum_probs=51.9
Q ss_pred CCccccccccccCc-eEEeecCcccc--cccccccccCCCCCCCCceeccCCeecc-HHHHhh
Q psy4350 16 KSSCGGCGQPIIDR-FYLLAVDRQWH--LGCLQCAHCHVPLHSELSCFSRHGNIYC-KQDFFR 74 (107)
Q Consensus 16 ~~~C~~C~~~i~~~-~~~~~~~~~~H--~~Cf~C~~C~~~l~~~~~~~~~~~~~~C-~~~y~~ 74 (107)
.++|.+|+++|.+. ..+.++++.|| +.||+|..|+++|.+. .|+.+++++|| .+||.+
T Consensus 2 a~~C~~C~~~I~~~~~~v~a~~~~wH~~~~CF~C~~C~~~L~~~-~f~~~~g~~yC~~~C~~k 63 (65)
T 2iyb_E 2 AVVCQGCHNAIDPEVQRVTYNNFSWHASTECFLCSCCSKCLIGQ-KFMPVEGMVFCSVECKKR 63 (65)
T ss_dssp CEECTTTSSEECTTSCEEEETTEEEETTTTTSBCTTTCCBCTTS-CCEEETTEEESSHHHHHT
T ss_pred cCCCcCCCCeeccCceEEEECCCccCCCCCCEECCCCCCcCCCC-ceEEECCEEecCHHHhhh
Confidence 46799999999963 56899999999 9999999999999877 78999999999 889865
No 43
>1v6g_A Actin binding LIM protein 2; LIM domain, zinc binding domain, ablim2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=99.43 E-value=1.9e-13 Score=77.35 Aligned_cols=61 Identities=20% Similarity=0.388 Sum_probs=51.0
Q ss_pred CCCccccccccccCceEEeecCcccccccccccccCCCCCCCCceeccCCeeccHHHHhh-hC
Q psy4350 15 EKSSCGGCGQPIIDRFYLLAVDRQWHLGCLQCAHCHVPLHSELSCFSRHGNIYCKQDFFR-YS 76 (107)
Q Consensus 15 ~~~~C~~C~~~i~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~~C~~~y~~-~~ 76 (107)
..++|..|++.|.+. .+.++++.||+.||+|..|+++|.....+...++.+||..||.+ ++
T Consensus 14 ~~~~C~~C~~~I~~~-~v~a~~~~wH~~CF~C~~C~~~L~~~~~~~~~~~~~~C~~C~~~~~~ 75 (81)
T 1v6g_A 14 YGTRCFSCDQFIEGE-VVSALGKTYHPDCFVCAVCRLPFPPGDRVTFNGKECMCQKCSLPVSV 75 (81)
T ss_dssp CCCBCTTTCCBCCSC-CEEETTEEECTTTSSCSSSCCCCCSSSCEEEETTEEEEHHHHSCCSS
T ss_pred hCCcCccccCEeccc-eEEECCceeCccCCccccCCCCCCCCCEEEeCCCCEEChhhhcccCC
Confidence 356899999999964 58999999999999999999999866345555556899999988 65
No 44
>1rut_X Flinc4, fusion protein of LMO4 protein and LIM domain- binding protein 1; B-tandem zipper, protein binding; 1.30A {Mus musculus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 2dfy_X 2xjz_I 2xjy_B
Probab=99.33 E-value=5.9e-13 Score=86.22 Aligned_cols=64 Identities=23% Similarity=0.488 Sum_probs=52.4
Q ss_pred ccccccccccCce-EEeecCcccccccccccccCCCCCCCCceeccCCeeccHHHHhh-hCCCCCCC
Q psy4350 18 SCGGCGQPIIDRF-YLLAVDRQWHLGCLQCAHCHVPLHSELSCFSRHGNIYCKQDFFR-YSQARYPD 82 (107)
Q Consensus 18 ~C~~C~~~i~~~~-~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~~C~~~y~~-~~~~~C~~ 82 (107)
+|..|++.|...+ ++.+.++.||+.||+|..|++.|.....|+..++++||+.||.+ ++ ++|..
T Consensus 71 ~C~~C~~~I~~~e~~i~a~~~~~H~~CF~C~~C~~~L~~g~~f~~~~g~~yC~~c~~~~~~-~~~~~ 136 (188)
T 1rut_X 71 ACSACGQSIPASELVMRAQGNVYHLKCFTCSTCRNRLVPGDRFHYINGSLFCEHDRPTALI-NGHLN 136 (188)
T ss_dssp ECTTTCCEECTTSEEEEETTEEECGGGCBCTTTCCBCCTTCEEEEETTEEEEGGGCCTTTC------
T ss_pred ccccCCCccccCcEEEEcCCCEEeCCCCeECCCCCCCCCCCeEEEECCeEECHHHHHHHhc-ccccc
Confidence 7999999998754 47899999999999999999999643378899999999999999 88 57765
No 45
>2xjy_A Rhombotin-2; oncoprotein, T-cell leukemia, proto-oncogene, transcription, developmental protein; 2.40A {Homo sapiens} PDB: 2xjz_A
Probab=99.31 E-value=1e-12 Score=80.38 Aligned_cols=59 Identities=24% Similarity=0.541 Sum_probs=51.9
Q ss_pred ccccccccccCce-EEeecCcccccccccccccCCCCCCCCceeccCCeeccHHHHhh-hC
Q psy4350 18 SCGGCGQPIIDRF-YLLAVDRQWHLGCLQCAHCHVPLHSELSCFSRHGNIYCKQDFFR-YS 76 (107)
Q Consensus 18 ~C~~C~~~i~~~~-~~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~~C~~~y~~-~~ 76 (107)
+|..|+++|.+.+ .+.+.++.||+.||+|..|+++|.....|+..++++||..||.+ |+
T Consensus 68 ~C~~C~~~I~~~e~~~~a~~~~~H~~CF~C~~C~~~L~~g~~f~~~~~~~~C~~c~~~~~~ 128 (131)
T 2xjy_A 68 LCASCDKRIRAYEMTMRVKDKVYHLECFKCAACQKHFCVGDRYLLINSDIVCEQDIYEWTK 128 (131)
T ss_dssp ECTTTCCEECTTSEEEEETTEEEEGGGCBCTTTCCBCCTTCEEEEETTEEEEGGGHHHHHH
T ss_pred ChhhcCCccCccceeEeeCCceECccCcccCCCCCCCCCCCEEEEECCEEEcHHHHHHHhh
Confidence 8999999998744 57899999999999999999999543378889999999999998 76
No 46
>2xqn_T Testin, TESS; metal-binding protein, cytoskeleton, focal adhesion, acrosom; 2.62A {Homo sapiens}
Probab=99.28 E-value=3.7e-12 Score=77.44 Aligned_cols=59 Identities=20% Similarity=0.519 Sum_probs=52.3
Q ss_pred CCccccccccccCc-eEEeecCcccc--cccccccccCCCCCCCCceeccCCeeccHHHHhh-h
Q psy4350 16 KSSCGGCGQPIIDR-FYLLAVDRQWH--LGCLQCAHCHVPLHSELSCFSRHGNIYCKQDFFR-Y 75 (107)
Q Consensus 16 ~~~C~~C~~~i~~~-~~~~~~~~~~H--~~Cf~C~~C~~~l~~~~~~~~~~~~~~C~~~y~~-~ 75 (107)
.++|.+|+++|.+. ..+.++++.|| +.||+|..|+++|.+. .|+..++++||+.+|.+ |
T Consensus 63 ~~~C~~C~~~I~~~~~~~~a~~~~~H~~~~CF~C~~C~~~l~~~-~f~~~~~~~yC~~~~~~~f 125 (126)
T 2xqn_T 63 AVVCQGCHNAIDPEVQRVTYNNFSWHASTECFLCSCCSKCLIGQ-KFMPVEGMVFCSVECKKRM 125 (126)
T ss_dssp CCBCTTTCSBCCTTSCEEEETTEEEESSTTTSBCTTTCCBCTTS-EEEEETTEEESSHHHHHSC
T ss_pred CccCcccCCcCCcCceEEECCCCEeeCCCCCcCcCCCCCccCCC-eeEeECCEEcchHHhhhhc
Confidence 57899999999863 45899999999 9999999999999876 78889999999988877 5
No 47
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=99.16 E-value=3.9e-11 Score=76.41 Aligned_cols=61 Identities=23% Similarity=0.441 Sum_probs=51.6
Q ss_pred CCccccccccccCceE-EeecCcccccccccccccCCCCCCCCce-eccCCeeccHHHHhh-hC
Q psy4350 16 KSSCGGCGQPIIDRFY-LLAVDRQWHLGCLQCAHCHVPLHSELSC-FSRHGNIYCKQDFFR-YS 76 (107)
Q Consensus 16 ~~~C~~C~~~i~~~~~-~~~~~~~~H~~Cf~C~~C~~~l~~~~~~-~~~~~~~~C~~~y~~-~~ 76 (107)
.++|..|++.|.+.+. +.+.++.||+.||+|..|++.|..+..| ...++++||+.||.+ +.
T Consensus 65 ~~~C~~C~~~I~~~~~v~~a~~~~~H~~CF~C~~C~~~L~~g~~f~~~~~g~~~C~~c~~~~~~ 128 (169)
T 2rgt_A 65 GTKCAACQLGIPPTQVVRRAQDFVYHLHCFACVVCKRQLATGDEFYLMEDSRLVCKADYETAKQ 128 (169)
T ss_dssp SCBCTTTCCBCCTTSEEEEETTEEEEGGGCBCTTTCCBCCTTCEEEECTTSCEEEHHHHHHHHH
T ss_pred cccccccccccCCCcEEEEcCCceEeeCCCcCCCCCCCCCCCCceEEccCCeEECHHHHHHHhh
Confidence 4689999999987654 5899999999999999999999744355 456899999999998 76
No 48
>2jtn_A LIM domain-binding protein 1, LIM/homeobox protein LHX3; intramolecular (fusion) protein-protein complex, protein binding/transcription complex; NMR {Mus musculus}
Probab=99.12 E-value=5.5e-11 Score=76.55 Aligned_cols=60 Identities=23% Similarity=0.454 Sum_probs=50.1
Q ss_pred CCCccccccccccCceE-EeecCcccccccccccccCCCCCCCCcee-ccCCeeccHHHHhh
Q psy4350 15 EKSSCGGCGQPIIDRFY-LLAVDRQWHLGCLQCAHCHVPLHSELSCF-SRHGNIYCKQDFFR 74 (107)
Q Consensus 15 ~~~~C~~C~~~i~~~~~-~~~~~~~~H~~Cf~C~~C~~~l~~~~~~~-~~~~~~~C~~~y~~ 74 (107)
..++|..|++.|.+.+. +.+.++.||+.||+|..|++.|..+..|+ ..++++||+.||.+
T Consensus 118 f~~kC~~C~~~I~~~~~v~~a~~~~~H~~CF~C~~C~~~L~~g~~f~~~~~g~~yC~~cy~~ 179 (182)
T 2jtn_A 118 FGTKCAACQLGIPPTQVVRRAQDFVYHLHCFACVVCKRQLATGDEFYLMEDSRLVCKADYET 179 (182)
T ss_dssp TSCCCTTTCCCCCSSCCCCEETTEECCTTTCCCTTTCCCCCTTCEEEECTTSCEECHHHHHH
T ss_pred cccccccCCCccCCCceEEecCCCCEEeCCCcCCCCCCCCCCCCceEEccCCEEECHHHHHH
Confidence 35789999999987653 57899999999999999999997443554 56899999999976
No 49
>1zfo_A LAsp-1; LIM domain, zinc-finger, metal-binding protein; NMR {Sus scrofa} SCOP: g.39.1.4
Probab=98.44 E-value=5.2e-08 Score=45.20 Aligned_cols=29 Identities=24% Similarity=0.731 Sum_probs=26.6
Q ss_pred CCccccccccccCceEEeecCcccccccc
Q psy4350 16 KSSCGGCGQPIIDRFYLLAVDRQWHLGCL 44 (107)
Q Consensus 16 ~~~C~~C~~~i~~~~~~~~~~~~~H~~Cf 44 (107)
.++|..|++.++.++.+.+.|+.||..||
T Consensus 3 ~~~C~~C~k~Vy~~Ek~~~~g~~~Hk~CF 31 (31)
T 1zfo_A 3 NPNCARCGKIVYPTEKVNCLDKFWHKACF 31 (31)
T ss_dssp CCBCSSSCSBCCGGGCCCSSSSCCCGGGC
T ss_pred CCcCCccCCEEecceeEEECCeEecccCC
Confidence 35799999999999989999999999997
No 50
>2ehe_A Four and A half LIM domains 3; FHL-3, skeletal muscle LIM- protein 2, SLIM 2, FHL3, SLIM2, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.41 E-value=2.3e-08 Score=56.17 Aligned_cols=38 Identities=3% Similarity=-0.140 Sum_probs=34.5
Q ss_pred CCeeccHHHHhh-hCCCCCCCCCCCCcch--hhhhhhccccCCC
Q psy4350 63 HGNIYCKQDFFR-YSQARYPDLPIPKTLV--SFLYDKQGAASEP 103 (107)
Q Consensus 63 ~~~~~C~~~y~~-~~~~~C~~~~C~~~i~--~~~~~~~g~~~~p 103 (107)
+|++||+.||.+ |+ ++|.. |+++|. +.++.+.|+.|||
T Consensus 1 ~g~~yC~~~y~~~~~-~~C~~--C~~~I~~~~~~~~a~~~~~H~ 41 (82)
T 2ehe_A 1 GSSGSSGPCYDNTFA-NTCAE--CQQLIGHDSRELFYEDRHFHE 41 (82)
T ss_dssp CCCCCCCCCCCCCCS-CBCTT--TCCBCCSSCCBCCCSSCCCBT
T ss_pred CCceechhHhCcccC-CcCcc--CCCccccCcEEEEeCCccccc
Confidence 578999999999 99 69999 999998 7888889999998
No 51
>2cuq_A Four and A half LIM domains 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=98.38 E-value=2.9e-08 Score=55.49 Aligned_cols=38 Identities=11% Similarity=-0.036 Sum_probs=35.1
Q ss_pred CCeeccHHHHhh-hCCCCCCCCCCCCcchhhhhhhccccCCC
Q psy4350 63 HGNIYCKQDFFR-YSQARYPDLPIPKTLVSFLYDKQGAASEP 103 (107)
Q Consensus 63 ~~~~~C~~~y~~-~~~~~C~~~~C~~~i~~~~~~~~g~~~~p 103 (107)
+|++||+.||.+ |+ ++|.. |+++|.+..+++.|+.|||
T Consensus 1 gg~~yC~~cy~~~~~-~~C~~--C~~~I~~~~v~a~~~~~H~ 39 (80)
T 2cuq_A 1 GSSGSSGPCYENKFA-PRCAR--CSKTLTQGGVTYRDQPWHR 39 (80)
T ss_dssp CCCCSCCCCCCCCSS-CCCTT--TCCCCCSCCEESSSSEECT
T ss_pred CCcEEcHHHHccccC-CcCCC--CCCEecCcEEEECCchhhh
Confidence 478999999999 99 79999 9999999889999999997
No 52
>1x6a_A LIMK-2, LIM domain kinase 2; LIM-kinase 2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=98.36 E-value=4.5e-08 Score=54.85 Aligned_cols=38 Identities=5% Similarity=0.013 Sum_probs=34.8
Q ss_pred CeeccHHHHhh-hCCCCCCCCCCCCcchhhhhhhccccCCCC
Q psy4350 64 GNIYCKQDFFR-YSQARYPDLPIPKTLVSFLYDKQGAASEPL 104 (107)
Q Consensus 64 ~~~~C~~~y~~-~~~~~C~~~~C~~~i~~~~~~~~g~~~~p~ 104 (107)
+.+||+.||.+ |+ ++|.. |+++|.+..+.+.|+.|||-
T Consensus 2 ~~~yC~~~y~~~~~-~~C~~--C~~~I~~~~~~a~~~~~H~~ 40 (81)
T 1x6a_A 2 SSGSSGKDYWGKFG-EFCHG--CSLLMTGPFMVAGEFKYHPE 40 (81)
T ss_dssp CCCCCCCCSSCCSS-CBCTT--TCCBCCSCCBCCTTCCBCTT
T ss_pred CCccchhHHhhhcC-CcCcc--CCCCcCceEEEECCceeccc
Confidence 57899999999 99 69999 99999999999999999973
No 53
>2egq_A FHL1 protein; LIM domain, four and A half LIM domains protein 1, skeletal muscle LIM- protein 1, SLIM 1, structural genomics NPPSFA; NMR {Homo sapiens}
Probab=98.33 E-value=3.2e-08 Score=54.93 Aligned_cols=38 Identities=3% Similarity=-0.015 Sum_probs=34.0
Q ss_pred CCeeccHHHHhh-hCCCCCCCCCCCCcchh-----hhhhhccccCCC
Q psy4350 63 HGNIYCKQDFFR-YSQARYPDLPIPKTLVS-----FLYDKQGAASEP 103 (107)
Q Consensus 63 ~~~~~C~~~y~~-~~~~~C~~~~C~~~i~~-----~~~~~~g~~~~p 103 (107)
++++||+.||.+ |+ ++|.. |+++|.+ ..+++.|+.|||
T Consensus 1 g~~~yC~~cy~~~~~-~~C~~--C~~~I~~~g~~~~~~~a~~~~~H~ 44 (77)
T 2egq_A 1 GSSGSSGDCYKNFVA-KKCAG--CKNPITGFGKGSSVVAYEGQSWHD 44 (77)
T ss_dssp CCSSCCTTCCCSCCC-CCCSS--SCCCCCCCSSCCCEEEETTEEEET
T ss_pred CCCeEchhHhchhhC-ccCcc--cCCcccCCCCCceeEEECcceeCc
Confidence 367899999999 99 79999 9999997 778889999997
No 54
>1x3h_A Leupaxin; paxillin family, protein-protein interaction, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=98.32 E-value=3.7e-08 Score=55.07 Aligned_cols=39 Identities=10% Similarity=0.162 Sum_probs=35.2
Q ss_pred CCeeccHHHHhh-hCCCCCCCCCCCCcchhhhhhhccccCCCC
Q psy4350 63 HGNIYCKQDFFR-YSQARYPDLPIPKTLVSFLYDKQGAASEPL 104 (107)
Q Consensus 63 ~~~~~C~~~y~~-~~~~~C~~~~C~~~i~~~~~~~~g~~~~p~ 104 (107)
++++||+.||.+ |+ ++|.. |+++|.+..+++.|+.|||-
T Consensus 1 gg~~yC~~~y~~~~~-~~C~~--C~~~I~~~~v~a~~~~~H~~ 40 (80)
T 1x3h_A 1 GSSGSSGKDFLAMFS-PKCGG--CNRPVLENYLSAMDTVWHPE 40 (80)
T ss_dssp CCCCCCCCCCCCCCS-CBCTT--TCCBCCSSCEEETTEEECTT
T ss_pred CCCccchhHHhhhcC-Ccccc--CCCeecceeEEECCCeEecC
Confidence 468999999999 98 79999 99999998889999999973
No 55
>1v6g_A Actin binding LIM protein 2; LIM domain, zinc binding domain, ablim2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=98.28 E-value=8.5e-08 Score=53.75 Aligned_cols=38 Identities=16% Similarity=0.150 Sum_probs=34.5
Q ss_pred CeeccHHHHhh-hCCCCCCCCCCCCcchhhhhhhccccCCCC
Q psy4350 64 GNIYCKQDFFR-YSQARYPDLPIPKTLVSFLYDKQGAASEPL 104 (107)
Q Consensus 64 ~~~~C~~~y~~-~~~~~C~~~~C~~~i~~~~~~~~g~~~~p~ 104 (107)
+.+||+.||.+ |+ ++|.. |+++|.+..+++.|+.|||-
T Consensus 2 ~~~yC~~dy~~~~~-~~C~~--C~~~I~~~~v~a~~~~wH~~ 40 (81)
T 1v6g_A 2 SSGSSGLDYQRLYG-TRCFS--CDQFIEGEVVSALGKTYHPD 40 (81)
T ss_dssp CCCCCCSCGGGSCC-CBCTT--TCCBCCSCCEEETTEEECTT
T ss_pred CCCcchHHHHhHhC-CcCcc--ccCEeccceEEECCceeCcc
Confidence 46899999999 99 69999 99999999999999999973
No 56
>2cup_A Skeletal muscle LIM-protein 1; four and half LIM domains protein 1, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 g.39.1.3
Probab=98.25 E-value=6e-07 Score=52.14 Aligned_cols=36 Identities=19% Similarity=0.486 Sum_probs=30.9
Q ss_pred CCCccccccccccCc-eEEeecCcccccccccccccC
Q psy4350 15 EKSSCGGCGQPIIDR-FYLLAVDRQWHLGCLQCAHCH 50 (107)
Q Consensus 15 ~~~~C~~C~~~i~~~-~~~~~~~~~~H~~Cf~C~~C~ 50 (107)
..++|..|+++|.+. ..+.++++.||+.||+|..|+
T Consensus 65 ~~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~ 101 (101)
T 2cup_A 65 DSPKCKGCFKAIVAGDQNVEYKGTVWHKDCFSGPSSG 101 (101)
T ss_dssp CCCBCSSSCCBCCSSSCEEESSSCEEETTTCCCTTCC
T ss_pred cCCccccCCCccccCCeEEEeCCcchHHhCCCCCCCC
Confidence 457899999999854 358999999999999999885
No 57
>2dlo_A Thyroid receptor-interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=98.19 E-value=1.1e-07 Score=53.32 Aligned_cols=38 Identities=8% Similarity=0.121 Sum_probs=32.7
Q ss_pred CCeeccHHHHhhhCCCCCCCCCCCCcchhhhhhhccccCCC
Q psy4350 63 HGNIYCKQDFFRYSQARYPDLPIPKTLVSFLYDKQGAASEP 103 (107)
Q Consensus 63 ~~~~~C~~~y~~~~~~~C~~~~C~~~i~~~~~~~~g~~~~p 103 (107)
++++||+.||..++ ++|.. |+++|.+..+++.|+.|||
T Consensus 2 ~g~~yC~~~y~~~~-~~C~~--C~~~I~~~~~~a~~~~~H~ 39 (81)
T 2dlo_A 2 SSGSSGEGCYVATL-EKCAT--CSQPILDRILRAMGKAYHP 39 (81)
T ss_dssp CCCCCCCCCCCSSC-CBCTT--TCCBCCSCCEEETTEEECT
T ss_pred cCCEECHHHhhcCC-Ccccc--CCCeecceeEEECCccccH
Confidence 57889999988655 68999 9999998888889999997
No 58
>1x63_A Skeletal muscle LIM-protein 1; LIM domain, four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=98.16 E-value=1.1e-07 Score=53.36 Aligned_cols=38 Identities=13% Similarity=-0.021 Sum_probs=33.1
Q ss_pred CCeeccHHHHhh-hCCCCCCCCCCCCcch--hhhhhhccccCCC
Q psy4350 63 HGNIYCKQDFFR-YSQARYPDLPIPKTLV--SFLYDKQGAASEP 103 (107)
Q Consensus 63 ~~~~~C~~~y~~-~~~~~C~~~~C~~~i~--~~~~~~~g~~~~p 103 (107)
++.+||+.||.+ |+ ++|.. |+++|. +..+++.|+.|||
T Consensus 1 ~~~~yC~~cy~~~~~-~~C~~--C~~~I~~~~~~~~a~~~~~H~ 41 (82)
T 1x63_A 1 GSSGSSGKCTTREDS-PKCKG--CFKAIVAGDQNVEYKGTVWHK 41 (82)
T ss_dssp CCSCCCCCCCSCCCS-CBCSS--SCCBCCSSSCEEECSSCEEET
T ss_pred CCCcCchhHHccccC-CcCcc--CCcccccCceEEEECcccccc
Confidence 357899999999 88 69999 999998 6678889999987
No 59
>1wig_A KIAA1808 protein; LIM domain, zinc finger, metal-binding protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=96.59 E-value=0.00067 Score=36.86 Aligned_cols=24 Identities=8% Similarity=0.090 Sum_probs=16.2
Q ss_pred CCCCCCCCCCcchhhhhhhccccCCC
Q psy4350 78 ARYPDLPIPKTLVSFLYDKQGAASEP 103 (107)
Q Consensus 78 ~~C~~~~C~~~i~~~~~~~~g~~~~p 103 (107)
++|.. |+++|.+..+.+.|+.|||
T Consensus 6 ~~C~~--C~~~I~~~~v~a~~~~wH~ 29 (73)
T 1wig_A 6 SGCDS--CEKYITGRVLEAGEKHYHP 29 (73)
T ss_dssp CSCSS--SCCCCSSCCBCCSSCCBCT
T ss_pred CCccc--CCCEecCeeEEeCCCCCCC
Confidence 46666 7777766666666666665
No 60
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=96.45 E-value=0.00069 Score=40.44 Aligned_cols=21 Identities=5% Similarity=-0.015 Sum_probs=17.0
Q ss_pred CCCCCceeccCCeeccHHHHhh
Q psy4350 53 LHSELSCFSRHGNIYCKQDFFR 74 (107)
Q Consensus 53 l~~~~~~~~~~~~~~C~~~y~~ 74 (107)
|.+. .|+.+++++||..||.+
T Consensus 92 l~g~-~f~~~~~~~yC~~~~~~ 112 (122)
T 1m3v_A 92 LMGG-EFGDEDERLITRLENTQ 112 (122)
T ss_dssp CCSC-TTCCTTCCCCEECTTTT
T ss_pred CCCC-ccEecCCEeEccCcchh
Confidence 4344 68889999999999887
No 61
>2cur_A Skeletal muscle LIM-protein 1; four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=95.07 E-value=0.0053 Score=32.60 Aligned_cols=10 Identities=20% Similarity=0.833 Sum_probs=4.6
Q ss_pred cccccCCCCC
Q psy4350 45 QCAHCHVPLH 54 (107)
Q Consensus 45 ~C~~C~~~l~ 54 (107)
+|..|++.+.
T Consensus 7 ~C~~C~~~I~ 16 (69)
T 2cur_A 7 GCVKCNKAIT 16 (69)
T ss_dssp CCSSSCCCCC
T ss_pred CCcccCCEeC
Confidence 3444554443
No 62
>1x68_A FHL5 protein; four-and-A-half LIM protein 5, zinc finger domain, AN actin- interacting protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=94.97 E-value=0.0035 Score=34.05 Aligned_cols=38 Identities=13% Similarity=0.322 Sum_probs=18.3
Q ss_pred cccccCCCCCC--CCceeccCCeeccHHHHhh-hCCCCCCCCCCCCcchh
Q psy4350 45 QCAHCHVPLHS--ELSCFSRHGNIYCKQDFFR-YSQARYPDLPIPKTLVS 91 (107)
Q Consensus 45 ~C~~C~~~l~~--~~~~~~~~~~~~C~~~y~~-~~~~~C~~~~C~~~i~~ 91 (107)
+|..|++++.+ ...+....++.|- .. | .|.. |+.+|.+
T Consensus 7 ~C~~C~~~I~~~g~~~~~~a~~~~wH----~~CF---~C~~--C~~~L~~ 47 (76)
T 1x68_A 7 GCVACSKPISGLTGAKFICFQDSQWH----SECF---NCGK--CSVSLVG 47 (76)
T ss_dssp CCTTTCCCCCTTTTCCEEEETTEEEE----GGGC---BCTT--TCCBCSS
T ss_pred CCccCCCcccCCCCceeEEECCcccC----cccC---Chhh--CCCcCCC
Confidence 45666666653 1123333444431 12 3 3566 6666654
No 63
>2iyb_E Testin, TESS, TES; LIM domain, SH3-binding, tumour supressor LIM domain EVH1 DO cell motility, phosphorylation, cytoskeleton; 2.35A {Homo sapiens}
Probab=94.97 E-value=0.0018 Score=34.26 Aligned_cols=18 Identities=0% Similarity=-0.236 Sum_probs=7.6
Q ss_pred CCCcch--hhhhhhccccCC
Q psy4350 85 IPKTLV--SFLYDKQGAASE 102 (107)
Q Consensus 85 C~~~i~--~~~~~~~g~~~~ 102 (107)
|+++|. +..+++.|+.||
T Consensus 8 C~~~I~~~~~~v~a~~~~wH 27 (65)
T 2iyb_E 8 CHNAIDPEVQRVTYNNFSWH 27 (65)
T ss_dssp TSSEECTTSCEEEETTEEEE
T ss_pred CCCeeccCceEEEECCCccC
Confidence 444444 233444444444
No 64
>2cor_A Pinch protein; LIM domain, particularly interesting NEW Cys- His protein, LIM and senescent cell antigen-like domains 1, structural genomics; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=94.94 E-value=0.0074 Score=33.11 Aligned_cols=24 Identities=4% Similarity=-0.162 Sum_probs=15.2
Q ss_pred CCCCCCCCCCcchhhhhhhccccCCC
Q psy4350 78 ARYPDLPIPKTLVSFLYDKQGAASEP 103 (107)
Q Consensus 78 ~~C~~~~C~~~i~~~~~~~~g~~~~p 103 (107)
++|.. |+++|.+..+++.|+.|||
T Consensus 16 ~~C~~--C~~~I~~~~v~a~~~~~H~ 39 (79)
T 2cor_A 16 YICQK--CHAIIDEQPLIFKNDPYHP 39 (79)
T ss_dssp CBCTT--TCCBCCSCCCCCSSSCCCT
T ss_pred CCCcc--CCCEecceEEEECcceeCC
Confidence 46666 6666666666666666665
No 65
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=94.88 E-value=0.0025 Score=35.84 Aligned_cols=38 Identities=18% Similarity=0.441 Sum_probs=23.4
Q ss_pred ccccccCCCCCCCCceeccCCeeccHHHHhhhCCCCCCCCCCCCcchh
Q psy4350 44 LQCAHCHVPLHSELSCFSRHGNIYCKQDFFRYSQARYPDLPIPKTLVS 91 (107)
Q Consensus 44 f~C~~C~~~l~~~~~~~~~~~~~~C~~~y~~~~~~~C~~~~C~~~i~~ 91 (107)
-+|..|++.+.+ .+....++.|...|| .|.. |+++|.+
T Consensus 26 ~~C~~C~~~I~~--~~v~a~~~~~H~~CF------~C~~--C~~~L~~ 63 (90)
T 2dar_A 26 PMCAHCNQVIRG--PFLVALGKSWHPEEF------NCAH--CKNTMAY 63 (90)
T ss_dssp CBBSSSCCBCCS--CEEEETTEEECTTTC------BCSS--SCCBCSS
T ss_pred CCCccCCCEecc--eEEEECCccccccCC------ccCC--CCCCCCC
Confidence 356777777754 344556667665552 4666 7777764
No 66
>2l3k_A Rhombotin-2, linker, LIM domain-binding protein 1; LMO2(LIM2)-LDB1(LID), chimera, fusion protein, oncoprotein; NMR {Mus musculus} PDB: 2l6y_B 2l6z_C
Probab=94.81 E-value=0.0065 Score=36.17 Aligned_cols=9 Identities=33% Similarity=0.977 Sum_probs=4.6
Q ss_pred ccccCCCCC
Q psy4350 46 CAHCHVPLH 54 (107)
Q Consensus 46 C~~C~~~l~ 54 (107)
|..|++.+.
T Consensus 11 C~~C~~~I~ 19 (123)
T 2l3k_A 11 CASCDKRIR 19 (123)
T ss_dssp CSSSSCCCC
T ss_pred ccCCCCeec
Confidence 455555554
No 67
>1nyp_A Pinch protein; LIM domain, protein recognition, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 PDB: 1u5s_B
Probab=94.80 E-value=0.0024 Score=33.73 Aligned_cols=10 Identities=30% Similarity=1.006 Sum_probs=5.9
Q ss_pred cccccCCCCC
Q psy4350 45 QCAHCHVPLH 54 (107)
Q Consensus 45 ~C~~C~~~l~ 54 (107)
+|..|++.+.
T Consensus 7 ~C~~C~~~I~ 16 (66)
T 1nyp_A 7 ICGACRRPIE 16 (66)
T ss_dssp EETTTTEECC
T ss_pred CCcccCCEec
Confidence 4556666665
No 68
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=94.62 E-value=0.0056 Score=32.61 Aligned_cols=23 Identities=4% Similarity=0.057 Sum_probs=12.0
Q ss_pred CCCCCCCCCcchhhhhhhccccCCC
Q psy4350 79 RYPDLPIPKTLVSFLYDKQGAASEP 103 (107)
Q Consensus 79 ~C~~~~C~~~i~~~~~~~~g~~~~p 103 (107)
+|.. |+++|.+..+++.|+.|||
T Consensus 7 ~C~~--C~~~I~~~~~~a~~~~~H~ 29 (70)
T 2d8x_A 7 GCHQ--CGEFIIGRVIKAMNNSWHP 29 (70)
T ss_dssp BCSS--SCCBCCSCCEEETTEEECT
T ss_pred cCcc--CCCEecceEEEECcccccc
Confidence 4555 5555555445555555554
No 69
>2d8z_A Four and A half LIM domains 2; skeletal muscle LIM-protein 3, LIM-domain protein DRAL, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=94.57 E-value=0.0055 Score=32.61 Aligned_cols=11 Identities=27% Similarity=1.023 Sum_probs=6.1
Q ss_pred cccccCCCCCC
Q psy4350 45 QCAHCHVPLHS 55 (107)
Q Consensus 45 ~C~~C~~~l~~ 55 (107)
+|..|++.+.+
T Consensus 7 ~C~~C~~~I~~ 17 (70)
T 2d8z_A 7 GCVQCKKPITT 17 (70)
T ss_dssp BCSSSCCBCCS
T ss_pred CCcccCCeecc
Confidence 45566666544
No 70
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=94.55 E-value=0.0063 Score=32.53 Aligned_cols=11 Identities=18% Similarity=0.606 Sum_probs=6.4
Q ss_pred cccccCCCCCC
Q psy4350 45 QCAHCHVPLHS 55 (107)
Q Consensus 45 ~C~~C~~~l~~ 55 (107)
+|..|++++..
T Consensus 7 ~C~~C~~~I~~ 17 (72)
T 1wyh_A 7 GCSACGETVMP 17 (72)
T ss_dssp BCSSSCCBCCS
T ss_pred CCccCCCcccc
Confidence 45666666653
No 71
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=94.50 E-value=0.0088 Score=32.71 Aligned_cols=11 Identities=18% Similarity=0.622 Sum_probs=5.9
Q ss_pred cccccCCCCCC
Q psy4350 45 QCAHCHVPLHS 55 (107)
Q Consensus 45 ~C~~C~~~l~~ 55 (107)
+|..|++.+.+
T Consensus 17 ~C~~C~~~I~~ 27 (79)
T 1x62_A 17 MCDKCGTGIVG 27 (79)
T ss_dssp CCSSSCCCCCS
T ss_pred ccccCCCCccC
Confidence 45555555543
No 72
>1x4k_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=94.35 E-value=0.0061 Score=32.58 Aligned_cols=38 Identities=8% Similarity=0.222 Sum_probs=19.1
Q ss_pred cccccCCCCCCCCceeccCCeeccHHHHhh-hCCCCCCCCCCCCcchh
Q psy4350 45 QCAHCHVPLHSELSCFSRHGNIYCKQDFFR-YSQARYPDLPIPKTLVS 91 (107)
Q Consensus 45 ~C~~C~~~l~~~~~~~~~~~~~~C~~~y~~-~~~~~C~~~~C~~~i~~ 91 (107)
+|..|++.+...+......++.|- .. | .|.. |+++|.+
T Consensus 7 ~C~~C~~~I~~~~~~~~a~~~~~H----~~CF---~C~~--C~~~L~~ 45 (72)
T 1x4k_A 7 GCQECKKTIMPGTRKMEYKGSSWH----ETCF---ICHR--CQQPIGT 45 (72)
T ss_dssp CBSSSCCCCCSSSCEEEETTEEEE----TTTT---CCSS--SCCCCCS
T ss_pred CCccCCCcccCCceEEEECcCeec----ccCC---cccc--cCCccCC
Confidence 566677766543223333444442 22 3 2555 6666654
No 73
>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=94.06 E-value=0.01 Score=31.69 Aligned_cols=11 Identities=36% Similarity=0.942 Sum_probs=6.1
Q ss_pred cccccCCCCCC
Q psy4350 45 QCAHCHVPLHS 55 (107)
Q Consensus 45 ~C~~C~~~l~~ 55 (107)
+|..|++++.+
T Consensus 7 ~C~~C~~~I~~ 17 (72)
T 1x4l_A 7 GCAGCTNPISG 17 (72)
T ss_dssp SBTTTTBCCCC
T ss_pred CCcCCCccccC
Confidence 45566665553
No 74
>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3 g.39.1.3
Probab=93.88 E-value=0.0094 Score=32.27 Aligned_cols=10 Identities=20% Similarity=0.773 Sum_probs=5.4
Q ss_pred cccccCCCCC
Q psy4350 45 QCAHCHVPLH 54 (107)
Q Consensus 45 ~C~~C~~~l~ 54 (107)
+|..|++.+.
T Consensus 2 ~C~~C~~~I~ 11 (76)
T 1iml_A 2 KCPKCDKEVY 11 (76)
T ss_dssp BCTTTSSBCC
T ss_pred cCCCCCCEEE
Confidence 3555555554
No 75
>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=93.57 E-value=0.011 Score=31.91 Aligned_cols=13 Identities=15% Similarity=0.485 Sum_probs=7.9
Q ss_pred ccccccCCCCCCC
Q psy4350 44 LQCAHCHVPLHSE 56 (107)
Q Consensus 44 f~C~~C~~~l~~~ 56 (107)
-+|..|++++...
T Consensus 10 ~~C~~C~~~I~~~ 22 (76)
T 2cu8_A 10 SKCPKCDKTVYFA 22 (76)
T ss_dssp CBCTTTCCBCCTT
T ss_pred CCCcCCCCEeECC
Confidence 3566777776643
No 76
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM domain 3, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=93.35 E-value=0.017 Score=32.21 Aligned_cols=12 Identities=17% Similarity=0.462 Sum_probs=7.6
Q ss_pred ccccccCCCCCC
Q psy4350 44 LQCAHCHVPLHS 55 (107)
Q Consensus 44 f~C~~C~~~l~~ 55 (107)
-+|..|++.+.+
T Consensus 26 ~~C~~C~~~I~~ 37 (89)
T 1x64_A 26 PLCDKCGSGIVG 37 (89)
T ss_dssp CBCTTTCCBCCS
T ss_pred CCcccCCCEecc
Confidence 356677776654
No 77
>3f6q_B LIM and senescent cell antigen-like-containing domain protein 1; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 2kbx_B 3ixe_B
Probab=93.14 E-value=0.0052 Score=32.69 Aligned_cols=49 Identities=16% Similarity=0.337 Sum_probs=31.5
Q ss_pred ccccccCCCCCCCCceeccCCeeccHHHHhhhCCCCCCCCCCCCcchhh-hhhhcccc
Q psy4350 44 LQCAHCHVPLHSELSCFSRHGNIYCKQDFFRYSQARYPDLPIPKTLVSF-LYDKQGAA 100 (107)
Q Consensus 44 f~C~~C~~~l~~~~~~~~~~~~~~C~~~y~~~~~~~C~~~~C~~~i~~~-~~~~~g~~ 100 (107)
-+|..|++.+...+......++.|-..|| .|.. |++++.+. .+..+|+.
T Consensus 12 ~~C~~C~~~i~~~e~~~~~~~~~~H~~CF------~C~~--C~~~L~~~~~~~~~g~~ 61 (72)
T 3f6q_B 12 ATCERCKGGFAPAEKIVNSNGELYHEQCF------VCAQ--CFQQFPEGLFYEFEGRK 61 (72)
T ss_dssp CBCTTTCCBCCTTCEEEEETTEEEETTTS------SCTT--TCCCCGGGCCEEETTEE
T ss_pred ccchhcCccccCCceEEEeCcCeeCcCCC------cccC--CCCCCCCCCeEeECCeE
Confidence 47888888887553444567777766662 5778 88888754 33334443
No 78
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=92.75 E-value=0.028 Score=29.92 Aligned_cols=10 Identities=20% Similarity=0.564 Sum_probs=5.3
Q ss_pred cccccCCCCC
Q psy4350 45 QCAHCHVPLH 54 (107)
Q Consensus 45 ~C~~C~~~l~ 54 (107)
+|..|++++.
T Consensus 7 ~C~~C~~~I~ 16 (72)
T 1x61_A 7 GCGGCGEDVV 16 (72)
T ss_dssp CCSSSCSCCC
T ss_pred CCccCCCccC
Confidence 4555555554
No 79
>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=92.71 E-value=0.024 Score=31.11 Aligned_cols=10 Identities=30% Similarity=0.893 Sum_probs=5.8
Q ss_pred cccccCCCCC
Q psy4350 45 QCAHCHVPLH 54 (107)
Q Consensus 45 ~C~~C~~~l~ 54 (107)
.|..|++.+.
T Consensus 17 ~C~~C~~~I~ 26 (80)
T 2dj7_A 17 HCAGCKEEIK 26 (80)
T ss_dssp CCTTTCCCCS
T ss_pred CCcCcCCeeC
Confidence 4556666554
No 80
>1g47_A Pinch protein; LIM domain, Zn finger, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=91.64 E-value=0.041 Score=29.58 Aligned_cols=12 Identities=17% Similarity=0.548 Sum_probs=7.4
Q ss_pred ccccccCCCCCC
Q psy4350 44 LQCAHCHVPLHS 55 (107)
Q Consensus 44 f~C~~C~~~l~~ 55 (107)
-+|..|++.+..
T Consensus 12 ~~C~~C~~~I~~ 23 (77)
T 1g47_A 12 ATCERCKGGFAP 23 (77)
T ss_dssp CBCSSSCCBCCS
T ss_pred CCchhcCCccCC
Confidence 356677776653
No 81
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains; zinc finger protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=90.35 E-value=0.089 Score=28.82 Aligned_cols=12 Identities=33% Similarity=0.398 Sum_probs=7.6
Q ss_pred ccccccCCCCCC
Q psy4350 44 LQCAHCHVPLHS 55 (107)
Q Consensus 44 f~C~~C~~~l~~ 55 (107)
-+|..|++.+..
T Consensus 16 ~~C~~C~~~I~~ 27 (82)
T 2co8_A 16 DLCALCGEHLYV 27 (82)
T ss_dssp CBCSSSCCBCCT
T ss_pred CCCcccCCCccc
Confidence 356777776654
No 82
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=90.05 E-value=0.21 Score=27.70 Aligned_cols=38 Identities=16% Similarity=0.348 Sum_probs=30.7
Q ss_pred CCCCCCCccccccccccCceEEeecCcccccccccccc
Q psy4350 11 PCPEEKSSCGGCGQPIIDRFYLLAVDRQWHLGCLQCAH 48 (107)
Q Consensus 11 ~~~~~~~~C~~C~~~i~~~~~~~~~~~~~H~~Cf~C~~ 48 (107)
......-.|.-|.+.+.+...+..-...-|+-||.|+.
T Consensus 10 ~~~~a~l~CtlC~erLEdtHFVQCPsv~~HkFCFpCsr 47 (93)
T 2cs3_A 10 MANSGPLCCTICHERLEDTHFVQCPSVPSHKFCFPCSR 47 (93)
T ss_dssp SCSCCSCCCSSSCSCCSSTTSEECSSCSSCEECHHHHH
T ss_pred CCCCCeeEeecchhhhccCceeeCCCccCCeeeccccH
Confidence 34556678999999998887678888888999998874
No 83
>2l4z_A DNA endonuclease RBBP8, LIM domain transcription LMO4; protein-protein interaction, LIM-interaction DOM LMO4, RBBP8/CTIP, LIM-only protein; HET: DNA; NMR {Homo sapiens}
Probab=90.02 E-value=0.042 Score=32.73 Aligned_cols=23 Identities=4% Similarity=-0.064 Sum_probs=11.1
Q ss_pred CCCCCCCCCcchhhh-hhhccccCCC
Q psy4350 79 RYPDLPIPKTLVSFL-YDKQGAASEP 103 (107)
Q Consensus 79 ~C~~~~C~~~i~~~~-~~~~g~~~~p 103 (107)
+|.. |+++|.+.. +.+.|+.|||
T Consensus 63 ~C~~--C~~~I~~~~~v~a~~~~wH~ 86 (123)
T 2l4z_A 63 RCAG--CGGKIADRFLLYAMDSYWHS 86 (123)
T ss_dssp BBSS--SSSBCCSSSEEEETTEEEET
T ss_pred cCcC--CCCCcCCcEEEEeCCcEEcc
Confidence 4555 555554432 4444555544
No 84
>1a7i_A QCRP2 (LIM1); LIM domain containing proteins, metal-binding protein, zinc finger; NMR {Coturnix japonica} SCOP: g.39.1.3 g.39.1.3 PDB: 2o10_A
Probab=89.48 E-value=0.054 Score=29.51 Aligned_cols=10 Identities=20% Similarity=0.683 Sum_probs=5.4
Q ss_pred cccccCCCCC
Q psy4350 45 QCAHCHVPLH 54 (107)
Q Consensus 45 ~C~~C~~~l~ 54 (107)
+|..|++.+.
T Consensus 9 ~C~~C~~~I~ 18 (81)
T 1a7i_A 9 KCGACGRTVY 18 (81)
T ss_dssp BCSSSCCBCS
T ss_pred cCcCcCcccc
Confidence 4555555554
No 85
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=85.52 E-value=1.1 Score=24.25 Aligned_cols=35 Identities=20% Similarity=0.387 Sum_probs=21.6
Q ss_pred CCCCCCCCccccccccccCceEEeecCcccccccc
Q psy4350 10 SPCPEEKSSCGGCGQPIIDRFYLLAVDRQWHLGCL 44 (107)
Q Consensus 10 ~~~~~~~~~C~~C~~~i~~~~~~~~~~~~~H~~Cf 44 (107)
+..+.....|.-|...|........-+..||..|+
T Consensus 9 ~~y~~~i~~C~IC~~~i~~g~~C~~C~h~fH~~Ci 43 (74)
T 2ct0_A 9 ETYPDAVKICNICHSLLIQGQSCETCGIRMHLPCV 43 (74)
T ss_dssp CCCSSSSCBCSSSCCBCSSSEECSSSCCEECHHHH
T ss_pred hhccCCCCcCcchhhHcccCCccCCCCchhhHHHH
Confidence 44556678899999988765322333444555554
No 86
>2d8y_A Eplin protein; LIM domain, epithelial protein LOST in neoplasm, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=82.97 E-value=0.86 Score=25.14 Aligned_cols=49 Identities=12% Similarity=0.154 Sum_probs=31.7
Q ss_pred ccccccCCCCCCCCceeccCCeeccHHHHhhhCCCCCCCCCCCCcchhh-hhhhccccC
Q psy4350 44 LQCAHCHVPLHSELSCFSRHGNIYCKQDFFRYSQARYPDLPIPKTLVSF-LYDKQGAAS 101 (107)
Q Consensus 44 f~C~~C~~~l~~~~~~~~~~~~~~C~~~y~~~~~~~C~~~~C~~~i~~~-~~~~~g~~~ 101 (107)
-+|..|++.+... ......++.|-..|| .|.. |+++|.+. .+..+|+.|
T Consensus 16 ~~C~~C~~~I~~~-~~v~a~~~~~H~~CF------~C~~--C~~~L~~~~~~~~~g~~y 65 (91)
T 2d8y_A 16 ETCVECQKTVYPM-ERLLANQQVFHISCF------RCSY--CNNKLSLGTYASLHGRIY 65 (91)
T ss_dssp CBCTTTCCBCCTT-SEEECSSSEEETTTC------BCTT--TCCBCCTTTCCCSSSCCC
T ss_pred CcCccCCCccCCc-eeEEECCCEECCCCC------eeCC--CCCCCCCCCcEeECCEEE
Confidence 4788899888765 344566677766662 4777 88888754 344445444
No 87
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=80.89 E-value=1 Score=29.84 Aligned_cols=30 Identities=20% Similarity=0.339 Sum_probs=17.3
Q ss_pred CCCccccccccccCceEEeecCcccccccc
Q psy4350 15 EKSSCGGCGQPIIDRFYLLAVDRQWHLGCL 44 (107)
Q Consensus 15 ~~~~C~~C~~~i~~~~~~~~~~~~~H~~Cf 44 (107)
....|..|+..|..+....--+..||..|+
T Consensus 179 ~i~~C~iC~~iv~~g~~C~~C~~~~H~~C~ 208 (238)
T 3nw0_A 179 AVKICNICHSLLIQGQSCETCGIRMHLPCV 208 (238)
T ss_dssp TCCBCTTTCSBCSSCEECSSSCCEECHHHH
T ss_pred CCCcCcchhhHHhCCcccCccChHHHHHHH
Confidence 466788888888755322223444555554
No 88
>1jjd_A Metallothionein, SMTA; zinc finger, zinc cluster, metal binding PR; NMR {Synechococcus elongatus} SCOP: g.46.1.1
Probab=79.85 E-value=2.9 Score=21.31 Aligned_cols=29 Identities=21% Similarity=0.482 Sum_probs=22.2
Q ss_pred cccccCCCCCCCCceeccCCeecc-HHHHhh
Q psy4350 45 QCAHCHVPLHSELSCFSRHGNIYC-KQDFFR 74 (107)
Q Consensus 45 ~C~~C~~~l~~~~~~~~~~~~~~C-~~~y~~ 74 (107)
.|..|...+... ..+.++|+.|| +.|...
T Consensus 9 aC~~C~c~Vs~~-eai~~dGK~YCSe~Ca~g 38 (55)
T 1jjd_A 9 ACEPCLCNVDPS-KAIDRNGLYYCSEACADG 38 (55)
T ss_dssp SSTTCCCCBCTT-TSEESSSCEESSHHHHHT
T ss_pred cCCCCeeEechH-HhhhcCCeEEehHHHHcc
Confidence 567788777655 56888999998 788776
No 89
>1j2o_A FLIN2, fusion of rhombotin-2 and LIM domain-binding protein 1; LIM-interaction-domain (LID), metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=78.62 E-value=1.3 Score=25.55 Aligned_cols=48 Identities=15% Similarity=0.171 Sum_probs=30.4
Q ss_pred cccccCCCCCCCCceeccCCeeccHHHHhhhCCCCCCCCCCCCcchh---hhhhhccccC
Q psy4350 45 QCAHCHVPLHSELSCFSRHGNIYCKQDFFRYSQARYPDLPIPKTLVS---FLYDKQGAAS 101 (107)
Q Consensus 45 ~C~~C~~~l~~~~~~~~~~~~~~C~~~y~~~~~~~C~~~~C~~~i~~---~~~~~~g~~~ 101 (107)
+|..|++++.+. ......++.|-..|| .|.. |+.+|.. ..+..+|+.|
T Consensus 5 ~C~~C~~~I~~~-~~~~a~~~~wH~~CF------~C~~--C~~~L~~~g~~~~~~~g~~y 55 (114)
T 1j2o_A 5 TCGGCQQNIGDR-YFLKAIDQYWHEDCL------SCDL--CGCRLGEVGRRLYYKLGRKL 55 (114)
T ss_dssp CBSSSCSCBCSS-EEEECSSSEECTTTC------CCSS--SCSCCCCSSSCCCCBTTBCC
T ss_pred CCcCCCCeeCCc-EEEEECchhHHHhcC------cccc--cCCchhcCCCeeEEECCeee
Confidence 578888888765 344456667665552 5777 8888852 4455556554
No 90
>2yrc_A Protein transport protein SEC23A; zinc binding, copii, coat protein complex-II, endoplasmic reticulum, golgi, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2yrd_A
Probab=74.89 E-value=3.8 Score=21.08 Aligned_cols=38 Identities=21% Similarity=0.385 Sum_probs=26.7
Q ss_pred CCCCCCCCCcccc--ccccccCceEEeecCcccccccccccccCC
Q psy4350 9 SSPCPEEKSSCGG--CGQPIIDRFYLLAVDRQWHLGCLQCAHCHV 51 (107)
Q Consensus 9 ~~~~~~~~~~C~~--C~~~i~~~~~~~~~~~~~H~~Cf~C~~C~~ 51 (107)
++..+..+.+|.+ |...|.+-..+...++.| +|..|..
T Consensus 2 ~~~~~~~pvRC~r~~CraylNP~~~~~~~~~~W-----~C~~C~~ 41 (59)
T 2yrc_A 2 SSGSSGEPVLCSRTTCRAVLNPLCQVDYRAKLW-----ACNFCYQ 41 (59)
T ss_dssp CCSSCCCCCBCSCTTTCCBCCTTSEEEGGGTEE-----ECSSSCC
T ss_pred CccCCCCCcccCCCCCCeEECCceEEECCCCEE-----EcccCCC
Confidence 4567788899998 999987765455556665 5666654
No 91
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=72.76 E-value=7 Score=20.02 Aligned_cols=43 Identities=14% Similarity=0.223 Sum_probs=29.4
Q ss_pred ccccccCCCCCCCCceeccCCeeccHHHHhh-hC----CCCCCCCCCCCcch
Q psy4350 44 LQCAHCHVPLHSELSCFSRHGNIYCKQDFFR-YS----QARYPDLPIPKTLV 90 (107)
Q Consensus 44 f~C~~C~~~l~~~~~~~~~~~~~~C~~~y~~-~~----~~~C~~~~C~~~i~ 90 (107)
+.|..|...+.. .....-+..||..|..+ +. ...|-. |...|.
T Consensus 21 ~~C~IC~~~~~~--~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~--Cr~~~~ 68 (73)
T 2ysl_A 21 VICPICLDILQK--PVTIDCGHNFCLKCITQIGETSCGFFKCPL--CKTSVR 68 (73)
T ss_dssp CBCTTTCSBCSS--EEECTTCCEEEHHHHHHHCSSSCSCCCCSS--SCCCCC
T ss_pred CEeccCCcccCC--eEEcCCCChhhHHHHHHHHHcCCCCCCCCC--CCCcCC
Confidence 566777766654 33446778899999887 52 247888 888775
No 92
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=71.73 E-value=4.2 Score=20.63 Aligned_cols=44 Identities=20% Similarity=0.471 Sum_probs=29.5
Q ss_pred ccccccCCCCCCCCceeccCCeeccHHHHhh-hC--CCCCCCCCCCCcchh
Q psy4350 44 LQCAHCHVPLHSELSCFSRHGNIYCKQDFFR-YS--QARYPDLPIPKTLVS 91 (107)
Q Consensus 44 f~C~~C~~~l~~~~~~~~~~~~~~C~~~y~~-~~--~~~C~~~~C~~~i~~ 91 (107)
+.|..|...+... ....-+..||..|..+ +. ...|-. |...|..
T Consensus 16 ~~C~IC~~~~~~p--~~~~CgH~fC~~Ci~~~~~~~~~~CP~--Cr~~~~~ 62 (66)
T 2ecy_A 16 YKCEKCHLVLCSP--KQTECGHRFCESCMAALLSSSSPKCTA--CQESIVK 62 (66)
T ss_dssp EECTTTCCEESSC--CCCSSSCCCCHHHHHHHHTTSSCCCTT--TCCCCCT
T ss_pred CCCCCCChHhcCe--eECCCCCHHHHHHHHHHHHhCcCCCCC--CCcCCCh
Confidence 5666666655442 2345677899999887 62 247888 8888753
No 93
>2gvi_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.87A {Thermoplasma acidophilum} SCOP: d.81.3.1 g.39.1.18
Probab=71.42 E-value=1.2 Score=28.70 Aligned_cols=31 Identities=19% Similarity=0.412 Sum_probs=23.0
Q ss_pred cccccccCCCCCCCCceeccCCeeccHHHHhh
Q psy4350 43 CLQCAHCHVPLHSELSCFSRHGNIYCKQDFFR 74 (107)
Q Consensus 43 Cf~C~~C~~~l~~~~~~~~~~~~~~C~~~y~~ 74 (107)
-..|..|+...... .....+++.+|..|+.+
T Consensus 172 ~~~C~~CGE~~~~~-~~~~~~g~~~C~~C~~~ 202 (204)
T 2gvi_A 172 KVRCDVCGEYTYEA-DAKLLNGKPVCKPDYYG 202 (204)
T ss_dssp EEECTTTCCEEEGG-GCEEETTEEECHHHHHC
T ss_pred ceECCCCCCchhhc-ceeeeCCcEEChhhhcc
Confidence 45788888776554 45567899999999864
No 94
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=71.39 E-value=7.6 Score=20.26 Aligned_cols=45 Identities=13% Similarity=0.316 Sum_probs=31.6
Q ss_pred cccccccCCCCCCCCceeccCCeeccHHHHhh-hC--CCCCCCCCCCCcchh
Q psy4350 43 CLQCAHCHVPLHSELSCFSRHGNIYCKQDFFR-YS--QARYPDLPIPKTLVS 91 (107)
Q Consensus 43 Cf~C~~C~~~l~~~~~~~~~~~~~~C~~~y~~-~~--~~~C~~~~C~~~i~~ 91 (107)
-|.|..|...+.. .....-|..||..|..+ +. ...|-. |+..+..
T Consensus 8 ~~~C~IC~~~~~~--Pv~~~CgH~fc~~Ci~~~~~~~~~~CP~--C~~~~~~ 55 (78)
T 1t1h_A 8 YFRCPISLELMKD--PVIVSTGQTYERSSIQKWLDAGHKTCPK--SQETLLH 55 (78)
T ss_dssp SSSCTTTSCCCSS--EEEETTTEEEEHHHHHHHHTTTCCBCTT--TCCBCSS
T ss_pred cCCCCCccccccC--CEEcCCCCeecHHHHHHHHHHCcCCCCC--CcCCCCh
Confidence 4677788777655 34456788899999877 54 246888 8887753
No 95
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=65.94 E-value=12 Score=19.18 Aligned_cols=45 Identities=11% Similarity=0.059 Sum_probs=27.2
Q ss_pred ccccccCCCCCCCCceeccCCeeccHHHHhh-hC-CCCCCCCCCCCcchhh
Q psy4350 44 LQCAHCHVPLHSELSCFSRHGNIYCKQDFFR-YS-QARYPDLPIPKTLVSF 92 (107)
Q Consensus 44 f~C~~C~~~l~~~~~~~~~~~~~~C~~~y~~-~~-~~~C~~~~C~~~i~~~ 92 (107)
+.|..|...+.. .....-+..||..|..+ +. ...|-. |...|...
T Consensus 16 ~~C~IC~~~~~~--~~~~~CgH~fC~~Ci~~~~~~~~~CP~--Cr~~~~~~ 62 (71)
T 2d8t_A 16 PECAICLQTCVH--PVSLPCKHVFCYLCVKGASWLGKRCAL--CRQEIPED 62 (71)
T ss_dssp CBCSSSSSBCSS--EEEETTTEEEEHHHHHHCTTCSSBCSS--SCCBCCHH
T ss_pred CCCccCCcccCC--CEEccCCCHHHHHHHHHHHHCCCcCcC--cCchhCHh
Confidence 455555555543 23334667788888766 33 246888 88888654
No 96
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=64.25 E-value=13 Score=19.07 Aligned_cols=46 Identities=17% Similarity=0.377 Sum_probs=30.0
Q ss_pred cccccccCCCCCCCCceeccCCeeccHHHHhh-hC-CCCCCCCCCCCcchh
Q psy4350 43 CLQCAHCHVPLHSELSCFSRHGNIYCKQDFFR-YS-QARYPDLPIPKTLVS 91 (107)
Q Consensus 43 Cf~C~~C~~~l~~~~~~~~~~~~~~C~~~y~~-~~-~~~C~~~~C~~~i~~ 91 (107)
-+.|..|...+... .....=+..||..|..+ +. ...|-. |...|..
T Consensus 15 ~~~C~IC~~~~~~p-~~~~~CgH~fC~~Ci~~~~~~~~~CP~--Cr~~~~~ 62 (72)
T 2djb_A 15 YILCSICKGYLIDA-TTITECLHTFCKSCIVRHFYYSNRCPK--CNIVVHQ 62 (72)
T ss_dssp GGSCTTTSSCCSSC-EECSSSCCEECHHHHHHHHHHCSSCTT--TCCCCCS
T ss_pred CCCCCCCChHHHCc-CEECCCCCHHHHHHHHHHHHcCCcCCC--cCcccCc
Confidence 35677777666553 22236677889988876 42 257888 8888764
No 97
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=63.03 E-value=18 Score=20.30 Aligned_cols=23 Identities=9% Similarity=0.114 Sum_probs=16.4
Q ss_pred eccHHHHhh---hCCCCCCCCCCCCcch
Q psy4350 66 IYCKQDFFR---YSQARYPDLPIPKTLV 90 (107)
Q Consensus 66 ~~C~~~y~~---~~~~~C~~~~C~~~i~ 90 (107)
+.|+.||.. -+.+.|.+ |+..-.
T Consensus 44 PvCrpCyEYErkeG~q~Cpq--CktrYk 69 (93)
T 1weo_A 44 PACRPCYEYERREGTQNCPQ--CKTRYK 69 (93)
T ss_dssp CCCHHHHHHHHHTSCSSCTT--TCCCCC
T ss_pred hhhHHHHHHHHhccCccccc--cCCccc
Confidence 459999864 44568888 887653
No 98
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=61.63 E-value=5.8 Score=22.76 Aligned_cols=25 Identities=8% Similarity=0.212 Sum_probs=11.1
Q ss_pred CeeccHHHHhh-h--CCCCCCCCCCCCcch
Q psy4350 64 GNIYCKQDFFR-Y--SQARYPDLPIPKTLV 90 (107)
Q Consensus 64 ~~~~C~~~y~~-~--~~~~C~~~~C~~~i~ 90 (107)
+.+||.+|+.. . +...|-. |..+|.
T Consensus 21 kHvFCydCa~~~~~~~~k~Cp~--C~~~V~ 48 (101)
T 3vk6_A 21 KHVFCYDCAILHEKKGDKMCPG--CSDPVQ 48 (101)
T ss_dssp CCEEEHHHHHHHHHTTCCBCTT--TCCBCS
T ss_pred cccHHHHHHHHHHhccCCCCcC--cCCeee
Confidence 34455555532 1 1234555 555553
No 99
>2eqg_A Tumor necrosis factor, alpha-induced protein 3; ZF-A20 domain, putative DNA-binding protein A20, zinc finger protein A20, structural genomics; NMR {Homo sapiens}
Probab=60.54 E-value=6.8 Score=18.94 Aligned_cols=17 Identities=18% Similarity=0.100 Sum_probs=14.4
Q ss_pred ceeccCCeeccHHHHhh
Q psy4350 58 SCFSRHGNIYCKQDFFR 74 (107)
Q Consensus 58 ~~~~~~~~~~C~~~y~~ 74 (107)
+|...+.+++|..||.+
T Consensus 21 F~mSVnTQP~CHEC~er 37 (49)
T 2eqg_A 21 FFMSVNTQPLCHECSER 37 (49)
T ss_dssp SBCCTTTTTSCHHHHHH
T ss_pred eEEEecCccchHHHHHH
Confidence 45677889999999987
No 100
>2lbz_A Thuricin17, thurincin H; helical loops, crosslinked, antimicrobial protein; HET: DSG 2TL DSN; NMR {Bacillus thuringiensis}
Probab=58.96 E-value=4.7 Score=17.32 Aligned_cols=13 Identities=54% Similarity=1.122 Sum_probs=10.0
Q ss_pred ccccccccCCCCC
Q psy4350 42 GCLQCAHCHVPLH 54 (107)
Q Consensus 42 ~Cf~C~~C~~~l~ 54 (107)
+|+.|..|+..|-
T Consensus 6 sclvcaacsvell 18 (31)
T 2lbz_A 6 SCLVCAACSVELL 18 (31)
T ss_dssp GGGGGGGCCSCSG
T ss_pred HHHHHHHhHHHHH
Confidence 5888888887663
No 101
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=57.17 E-value=16 Score=21.54 Aligned_cols=44 Identities=18% Similarity=0.275 Sum_probs=30.9
Q ss_pred ccccccCCCCCCCCceeccCCeeccHHHHhh-hC-CCCCCCCCCCCcchh
Q psy4350 44 LQCAHCHVPLHSELSCFSRHGNIYCKQDFFR-YS-QARYPDLPIPKTLVS 91 (107)
Q Consensus 44 f~C~~C~~~l~~~~~~~~~~~~~~C~~~y~~-~~-~~~C~~~~C~~~i~~ 91 (107)
+.|..|...+.. .....-|..||..|..+ +. ...|-. |..+|..
T Consensus 54 ~~C~iC~~~~~~--~~~~~CgH~fc~~Ci~~~~~~~~~CP~--Cr~~~~~ 99 (138)
T 4ayc_A 54 LQCIICSEYFIE--AVTLNCAHSFCSYCINEWMKRKIECPI--CRKDIKS 99 (138)
T ss_dssp SBCTTTCSBCSS--EEEETTSCEEEHHHHHHHTTTCSBCTT--TCCBCCC
T ss_pred CCCcccCcccCC--ceECCCCCCccHHHHHHHHHcCCcCCC--CCCcCCC
Confidence 567777776654 34556778899999876 43 247888 9888753
No 102
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=57.07 E-value=13 Score=21.01 Aligned_cols=45 Identities=20% Similarity=0.205 Sum_probs=31.6
Q ss_pred cccccccCCCCCCCCceeccCCeeccHHHHhh-hC--CCCCCCCCCCCcchh
Q psy4350 43 CLQCAHCHVPLHSELSCFSRHGNIYCKQDFFR-YS--QARYPDLPIPKTLVS 91 (107)
Q Consensus 43 Cf~C~~C~~~l~~~~~~~~~~~~~~C~~~y~~-~~--~~~C~~~~C~~~i~~ 91 (107)
-+.|..|...+... ....=|..||..|..+ +. ...|-. |...+..
T Consensus 15 ~~~C~iC~~~~~~p--~~~~CgH~fC~~Ci~~~~~~~~~~CP~--Cr~~~~~ 62 (115)
T 3l11_A 15 ECQCGICMEILVEP--VTLPCNHTLCKPCFQSTVEKASLCCPF--CRRRVSS 62 (115)
T ss_dssp HHBCTTTCSBCSSC--EECTTSCEECHHHHCCCCCTTTSBCTT--TCCBCHH
T ss_pred CCCCccCCcccCce--eEcCCCCHHhHHHHHHHHhHCcCCCCC--CCcccCc
Confidence 36777777766542 3446778899999877 53 247888 9998864
No 103
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=56.63 E-value=13 Score=19.57 Aligned_cols=43 Identities=9% Similarity=0.319 Sum_probs=24.7
Q ss_pred ccccccCCCCCCCCceeccCCeeccHHHHhh-hC-CCCCCCCCCCCcch
Q psy4350 44 LQCAHCHVPLHSELSCFSRHGNIYCKQDFFR-YS-QARYPDLPIPKTLV 90 (107)
Q Consensus 44 f~C~~C~~~l~~~~~~~~~~~~~~C~~~y~~-~~-~~~C~~~~C~~~i~ 90 (107)
+.|..|...+.. .....-+..||..|..+ +. ...|-. |...+.
T Consensus 16 ~~C~IC~~~~~~--p~~~~CgH~fC~~Ci~~~~~~~~~CP~--Cr~~~~ 60 (81)
T 2csy_A 16 FRCFICRQAFQN--PVVTKCRHYFCESCALEHFRATPRCYI--CDQPTG 60 (81)
T ss_dssp SBCSSSCSBCCS--EEECTTSCEEEHHHHHHHHHHCSBCSS--SCCBCC
T ss_pred CCCcCCCchhcC--eeEccCCCHhHHHHHHHHHHCCCcCCC--cCcccc
Confidence 455555555533 23345566777777765 32 246777 777764
No 104
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=56.58 E-value=14 Score=20.25 Aligned_cols=46 Identities=17% Similarity=0.335 Sum_probs=31.7
Q ss_pred cccccccCCCCCCCCceeccCCeeccHHHHhh-hC-CCCCCCCCCCCcchh
Q psy4350 43 CLQCAHCHVPLHSELSCFSRHGNIYCKQDFFR-YS-QARYPDLPIPKTLVS 91 (107)
Q Consensus 43 Cf~C~~C~~~l~~~~~~~~~~~~~~C~~~y~~-~~-~~~C~~~~C~~~i~~ 91 (107)
-+.|..|...+... .....-|..||..|..+ +. ...|-. |...+..
T Consensus 22 ~~~C~IC~~~~~~p-~~~~~CgH~fC~~Ci~~~~~~~~~CP~--Cr~~~~~ 69 (99)
T 2y43_A 22 LLRCGICFEYFNIA-MIIPQCSHNYCSLCIRKFLSYKTQCPT--CCVTVTE 69 (99)
T ss_dssp HTBCTTTCSBCSSE-EECTTTCCEEEHHHHHHHHTTCCBCTT--TCCBCCG
T ss_pred CCCcccCChhhCCc-CEECCCCCHhhHHHHHHHHHCCCCCCC--CCCcCCh
Confidence 36778887776553 22236788899999877 53 247888 8888764
No 105
>2e5r_A Dystrobrevin alpha; ZZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=55.74 E-value=14 Score=18.99 Aligned_cols=35 Identities=23% Similarity=0.533 Sum_probs=19.1
Q ss_pred cccccccccccccCCC-CCCCCcee--ccCCeeccHHHHhh
Q psy4350 37 RQWHLGCLQCAHCHVP-LHSELSCF--SRHGNIYCKQDFFR 74 (107)
Q Consensus 37 ~~~H~~Cf~C~~C~~~-l~~~~~~~--~~~~~~~C~~~y~~ 74 (107)
..+|. ..|..|+.. +.+. ++. .=.+--+|..||.+
T Consensus 7 ~v~H~--~~Cd~C~~~pi~G~-RykC~~C~d~DLC~~C~~~ 44 (63)
T 2e5r_A 7 GVFHP--VECSYCHSESMMGF-RYRCQQCHNYQLCQDCFWR 44 (63)
T ss_dssp SCCSC--SCCSSSCCCSSCSC-EEEESSCSSCEECHHHHHH
T ss_pred CceeC--CCCcCCCCcceecc-eEEecCCCCchhHHHHHhC
Confidence 34555 666777653 4432 332 11234468888886
No 106
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=55.18 E-value=19 Score=20.64 Aligned_cols=45 Identities=18% Similarity=0.256 Sum_probs=32.3
Q ss_pred cccccccCCCCCCCCceeccCCeeccHHHHhh-h--CCCCCCCCCCCCcchh
Q psy4350 43 CLQCAHCHVPLHSELSCFSRHGNIYCKQDFFR-Y--SQARYPDLPIPKTLVS 91 (107)
Q Consensus 43 Cf~C~~C~~~l~~~~~~~~~~~~~~C~~~y~~-~--~~~~C~~~~C~~~i~~ 91 (107)
-+.|..|...+.. .....-|..||..|... + ....|-. |...+..
T Consensus 52 ~~~C~IC~~~~~~--p~~~~CgH~fC~~Ci~~~~~~~~~~CP~--Cr~~~~~ 99 (124)
T 3fl2_A 52 TFQCICCQELVFR--PITTVCQHNVCKDCLDRSFRAQVFSCPA--CRYDLGR 99 (124)
T ss_dssp HTBCTTTSSBCSS--EEECTTSCEEEHHHHHHHHHTTCCBCTT--TCCBCCT
T ss_pred CCCCCcCChHHcC--cEEeeCCCcccHHHHHHHHhHCcCCCCC--CCccCCC
Confidence 4678888877765 34456788899999876 4 2237888 9888754
No 107
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=54.25 E-value=9.3 Score=19.15 Aligned_cols=29 Identities=17% Similarity=0.367 Sum_probs=16.9
Q ss_pred eccCCeeccHHHHhh-hC-CCCCCCCCCCCcch
Q psy4350 60 FSRHGNIYCKQDFFR-YS-QARYPDLPIPKTLV 90 (107)
Q Consensus 60 ~~~~~~~~C~~~y~~-~~-~~~C~~~~C~~~i~ 90 (107)
...=+..||..|..+ +. ...|-. |...|.
T Consensus 37 ~~~CgH~fc~~Ci~~~~~~~~~CP~--Cr~~~~ 67 (69)
T 2ea6_A 37 STECGHVFCSQCLRDSLKNANTCPT--CRKKIN 67 (69)
T ss_dssp ECSSSCEEEHHHHHHHHHHCSSCTT--TCCCCC
T ss_pred eCCCCChhcHHHHHHHHHcCCCCCC--CCCccC
Confidence 334456677777665 32 246777 776654
No 108
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=52.49 E-value=11 Score=21.41 Aligned_cols=42 Identities=17% Similarity=0.283 Sum_probs=24.8
Q ss_pred ccccccCCCCCCCCceec-cCCeeccHHHHhh-hCCCCCCCCCCCCcch
Q psy4350 44 LQCAHCHVPLHSELSCFS-RHGNIYCKQDFFR-YSQARYPDLPIPKTLV 90 (107)
Q Consensus 44 f~C~~C~~~l~~~~~~~~-~~~~~~C~~~y~~-~~~~~C~~~~C~~~i~ 90 (107)
+.|..|...+... ... .-|..||..|..+ +. ..|-. |...+.
T Consensus 23 ~~C~IC~~~~~~p--v~~~~CgH~fC~~Ci~~~~~-~~CP~--Cr~~~~ 66 (117)
T 1jm7_B 23 LRCSRCTNILREP--VCLGGCEHIFCSNCVSDCIG-TGCPV--CYTPAW 66 (117)
T ss_dssp TSCSSSCSCCSSC--BCCCSSSCCBCTTTGGGGTT-TBCSS--SCCBCS
T ss_pred CCCCCCChHhhCc--cEeCCCCCHHHHHHHHHHhc-CCCcC--CCCcCc
Confidence 5566666555442 233 5566777777766 55 46766 766653
No 109
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=51.93 E-value=14 Score=19.09 Aligned_cols=28 Identities=11% Similarity=0.123 Sum_probs=16.9
Q ss_pred cCCeeccHHHHhh-hC--------CCCCCCCCCCCcchh
Q psy4350 62 RHGNIYCKQDFFR-YS--------QARYPDLPIPKTLVS 91 (107)
Q Consensus 62 ~~~~~~C~~~y~~-~~--------~~~C~~~~C~~~i~~ 91 (107)
.=+..||..|..+ +. ...|-. |...+..
T Consensus 29 ~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~--Cr~~~~~ 65 (79)
T 2egp_A 29 DCGHSLCRACITVSNKEAVTSMGGKSSCPV--CGISYSF 65 (79)
T ss_dssp SSSCCCCHHHHSCCCCCCSSSCCCCCCCSS--SCCCCCS
T ss_pred CCCCHHHHHHHHHHHHhcccCCCCCCcCCC--CCCcCCH
Confidence 3455666666654 32 246777 8887764
No 110
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=51.60 E-value=21 Score=19.13 Aligned_cols=42 Identities=19% Similarity=0.357 Sum_probs=27.8
Q ss_pred ccccccCCCCCCCCceecc-CCeeccHHHHhh-h---CCCCCCCCCCCCcc
Q psy4350 44 LQCAHCHVPLHSELSCFSR-HGNIYCKQDFFR-Y---SQARYPDLPIPKTL 89 (107)
Q Consensus 44 f~C~~C~~~l~~~~~~~~~-~~~~~C~~~y~~-~---~~~~C~~~~C~~~i 89 (107)
+.|..|...+... .... =|..||..|..+ + +...|-. |...+
T Consensus 14 ~~C~IC~~~~~~p--~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~--Cr~~~ 60 (92)
T 3ztg_A 14 LLCLICKDIMTDA--VVIPCCGNSYCDECIRTALLESDEHTCPT--CHQND 60 (92)
T ss_dssp TEETTTTEECSSC--EECTTTCCEECHHHHHHHHHHCTTCCCTT--TCCSS
T ss_pred CCCCCCChhhcCc--eECCCCCCHHHHHHHHHHHHhcCCCcCcC--CCCcC
Confidence 5677777666542 3444 478889988766 4 2247888 88876
No 111
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=51.30 E-value=14 Score=18.53 Aligned_cols=28 Identities=14% Similarity=0.108 Sum_probs=14.6
Q ss_pred cCCeeccHHHHhh-hC-CCCCCCCCCCCcchh
Q psy4350 62 RHGNIYCKQDFFR-YS-QARYPDLPIPKTLVS 91 (107)
Q Consensus 62 ~~~~~~C~~~y~~-~~-~~~C~~~~C~~~i~~ 91 (107)
.=+..||..|..+ +. ...|-. |...+..
T Consensus 23 ~C~H~fc~~Ci~~~~~~~~~CP~--Cr~~~~~ 52 (68)
T 1chc_A 23 PCLHAFCYVCITRWIRQNPTCPL--CKVPVES 52 (68)
T ss_dssp TTTEEESTTHHHHHHHHSCSTTT--TCCCCCC
T ss_pred CCCCeeHHHHHHHHHhCcCcCcC--CChhhHh
Confidence 3445556666544 21 145666 6666653
No 112
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=51.18 E-value=20 Score=18.58 Aligned_cols=44 Identities=14% Similarity=0.277 Sum_probs=29.3
Q ss_pred ccccccCCCCCCCCceeccCCeeccHHHHhh-hC-------CCCCCCCCCCCcchh
Q psy4350 44 LQCAHCHVPLHSELSCFSRHGNIYCKQDFFR-YS-------QARYPDLPIPKTLVS 91 (107)
Q Consensus 44 f~C~~C~~~l~~~~~~~~~~~~~~C~~~y~~-~~-------~~~C~~~~C~~~i~~ 91 (107)
+.|..|...+... ....-+..||..|..+ +. ...|-. |...+..
T Consensus 20 ~~C~IC~~~~~~p--~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~--Cr~~~~~ 71 (85)
T 2ecw_A 20 VTCPICLELLKEP--VSADCNHSFCRACITLNYESNRNTDGKGNCPV--CRVPYPF 71 (85)
T ss_dssp TSCTTTCSCCSSC--EECTTSCCBCHHHHHHHHHHSBCTTSCBCCTT--TCCCCCT
T ss_pred CCCcCCChhhCcc--eeCCCCCHHHHHHHHHHHHhccCCCCCCCCCC--CCCcCCH
Confidence 5677777666543 3445677889888765 32 247888 8888764
No 113
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=51.16 E-value=24 Score=19.67 Aligned_cols=46 Identities=13% Similarity=0.039 Sum_probs=33.7
Q ss_pred cccccccccCCCCCCCCceeccCCeeccHHHHhh-hC-CCCCCCCCCCCcch
Q psy4350 41 LGCLQCAHCHVPLHSELSCFSRHGNIYCKQDFFR-YS-QARYPDLPIPKTLV 90 (107)
Q Consensus 41 ~~Cf~C~~C~~~l~~~~~~~~~~~~~~C~~~y~~-~~-~~~C~~~~C~~~i~ 90 (107)
+.-|.|..|...+.+ .+....|..||+.|-.+ +. ...|-. |+.++.
T Consensus 27 p~~~~CpI~~~~m~d--PV~~~cGhtf~r~~I~~~l~~~~~cP~--~~~~l~ 74 (100)
T 2kre_A 27 PDEFRDPLMDTLMTD--PVRLPSGTIMDRSIILRHLLNSPTDPF--NRQTLT 74 (100)
T ss_dssp STTTBCTTTCSBCSS--EEEETTTEEEEHHHHHHHTTSCSBCSS--SCCBCC
T ss_pred cHhhCCcCccCcccC--CeECCCCCEEchHHHHHHHHcCCCCCC--CCCCCC
Confidence 456888888887766 45566899999999776 43 246777 777765
No 114
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=50.97 E-value=13 Score=20.66 Aligned_cols=44 Identities=18% Similarity=0.462 Sum_probs=29.5
Q ss_pred ccccccCCCCCCCCceeccCCeeccHHHHhh-hCC----CCCCCCCCCCcchh
Q psy4350 44 LQCAHCHVPLHSELSCFSRHGNIYCKQDFFR-YSQ----ARYPDLPIPKTLVS 91 (107)
Q Consensus 44 f~C~~C~~~l~~~~~~~~~~~~~~C~~~y~~-~~~----~~C~~~~C~~~i~~ 91 (107)
+.|..|...+... ....-|..||..|..+ +.. ..|-. |...+..
T Consensus 22 ~~C~IC~~~~~~p--~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~--Cr~~~~~ 70 (112)
T 1jm7_A 22 LECPICLELIKEP--VSTKCDHIFCKFCMLKLLNQKKGPSQCPL--CKNDITK 70 (112)
T ss_dssp TSCSSSCCCCSSC--CBCTTSCCCCSHHHHHHHHSSSSSCCCTT--TSCCCCT
T ss_pred CCCcccChhhcCe--EECCCCCHHHHHHHHHHHHhCCCCCCCcC--CCCcCCH
Confidence 5677777666543 3345677889999876 431 26888 8887764
No 115
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=50.58 E-value=6.2 Score=20.07 Aligned_cols=26 Identities=19% Similarity=0.420 Sum_probs=12.6
Q ss_pred CCeeccHHHHhh-hC-CCCCCCCCCCCcch
Q psy4350 63 HGNIYCKQDFFR-YS-QARYPDLPIPKTLV 90 (107)
Q Consensus 63 ~~~~~C~~~y~~-~~-~~~C~~~~C~~~i~ 90 (107)
=+..||..|..+ +. ...|-. |...+.
T Consensus 35 CgH~fc~~Ci~~~~~~~~~CP~--Cr~~~~ 62 (71)
T 3ng2_A 35 CGHVFCSQCLRDSLKNANTCPT--CRKKIN 62 (71)
T ss_dssp TSCEEEHHHHHHHHHHCSBCTT--TCCBCC
T ss_pred CCChHhHHHHHHHHHcCCCCCC--CCCccC
Confidence 344555555543 21 135555 655554
No 116
>2dmj_A Poly (ADP-ribose) polymerase family, member 1; zinc finger, PARP-1, ADPRT, NAD(+) ADP-ribosyltransferase 1, poly(ADP-ribose) synthetase 1; NMR {Homo sapiens}
Probab=50.47 E-value=8.4 Score=22.09 Aligned_cols=32 Identities=19% Similarity=0.500 Sum_probs=19.9
Q ss_pred CCCCccccccccccCceE-Ee--e--c------Cccccccccc
Q psy4350 14 EEKSSCGGCGQPIIDRFY-LL--A--V------DRQWHLGCLQ 45 (107)
Q Consensus 14 ~~~~~C~~C~~~i~~~~~-~~--~--~------~~~~H~~Cf~ 45 (107)
++-..|..|.+.|.-.++ +. . . ...+|..||.
T Consensus 23 S~Ra~Ck~C~~kI~KgelRig~~v~~~~~~g~~~~W~H~~Cf~ 65 (106)
T 2dmj_A 23 SGRASCKKCSESIPKDSLRMAIMVQSPMFDGKVPHWYHFSCFW 65 (106)
T ss_dssp SSCCBCSSSCCBCCTTCEEEEEEEEETTTTEEEEEEEETTHHH
T ss_pred CCCCcchhhCCccCCCCEEEEEEecCCCCCCCcCEeECcCccc
Confidence 445679999999975542 21 1 1 1356888875
No 117
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=50.34 E-value=21 Score=19.83 Aligned_cols=45 Identities=16% Similarity=0.197 Sum_probs=30.9
Q ss_pred cccccccCCCCCCCCceec-cCCeeccHHHHhh-hC-CCCCCCCCCCCcchh
Q psy4350 43 CLQCAHCHVPLHSELSCFS-RHGNIYCKQDFFR-YS-QARYPDLPIPKTLVS 91 (107)
Q Consensus 43 Cf~C~~C~~~l~~~~~~~~-~~~~~~C~~~y~~-~~-~~~C~~~~C~~~i~~ 91 (107)
-+.|..|...+.. .... .-|..||..|..+ +. ...|-. |...+..
T Consensus 15 ~~~C~IC~~~~~~--p~~~~~CgH~fC~~Ci~~~~~~~~~CP~--Cr~~~~~ 62 (108)
T 2ckl_A 15 HLMCVLCGGYFID--ATTIIECLHSFCKTCIVRYLETSKYCPI--CDVQVHK 62 (108)
T ss_dssp GTBCTTTSSBCSS--EEEETTTCCEEEHHHHHHHHTSCSBCTT--TCCBSCS
T ss_pred cCCCccCChHHhC--cCEeCCCCChhhHHHHHHHHHhCCcCcC--CCccccc
Confidence 3577778776654 3333 7788899999876 43 247888 8887753
No 118
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=49.70 E-value=20 Score=18.57 Aligned_cols=44 Identities=14% Similarity=0.252 Sum_probs=28.5
Q ss_pred ccccccCCCCCCCCceeccCCeeccHHHHhh-hC-------CCCCCCCCCCCcchh
Q psy4350 44 LQCAHCHVPLHSELSCFSRHGNIYCKQDFFR-YS-------QARYPDLPIPKTLVS 91 (107)
Q Consensus 44 f~C~~C~~~l~~~~~~~~~~~~~~C~~~y~~-~~-------~~~C~~~~C~~~i~~ 91 (107)
+.|..|...+... ....-+..||..|..+ +. ...|-. |...+..
T Consensus 20 ~~C~IC~~~~~~p--~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~--Cr~~~~~ 71 (85)
T 2ecv_A 20 VTCPICLELLTQP--LSLDCGHSFCQACLTANHKKSMLDKGESSCPV--CRISYQP 71 (85)
T ss_dssp CCCTTTCSCCSSC--BCCSSSCCBCTTHHHHHHHHHHHTTSCCCCTT--TCCSSCS
T ss_pred CCCCCCCcccCCc--eeCCCCCHHHHHHHHHHHHHhhcCCCCCcCCC--CCCccCH
Confidence 5667777666542 2335667788888765 31 257888 8888764
No 119
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=48.66 E-value=25 Score=17.60 Aligned_cols=11 Identities=18% Similarity=0.452 Sum_probs=5.7
Q ss_pred CCccccccccc
Q psy4350 16 KSSCGGCGQPI 26 (107)
Q Consensus 16 ~~~C~~C~~~i 26 (107)
...|.-|...+
T Consensus 14 ~~~C~IC~~~~ 24 (69)
T 2kiz_A 14 EEKCTICLSIL 24 (69)
T ss_dssp CCSBTTTTBCC
T ss_pred CCCCeeCCccc
Confidence 34466665544
No 120
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=47.19 E-value=15 Score=22.19 Aligned_cols=46 Identities=20% Similarity=0.300 Sum_probs=32.7
Q ss_pred ccccccccCCCCCCCCceeccCCeeccHHHHhh-hC--CCCCCCCCCCCcch
Q psy4350 42 GCLQCAHCHVPLHSELSCFSRHGNIYCKQDFFR-YS--QARYPDLPIPKTLV 90 (107)
Q Consensus 42 ~Cf~C~~C~~~l~~~~~~~~~~~~~~C~~~y~~-~~--~~~C~~~~C~~~i~ 90 (107)
.-+.|..|...+... .....-+..||..|..+ +. ...|-. |...+.
T Consensus 53 ~~~~C~IC~~~~~~p-~~~~~CgH~fC~~Ci~~~~~~~~~~CP~--Cr~~~~ 101 (165)
T 2ckl_B 53 SELMCPICLDMLKNT-MTTKECLHRFCADCIITALRSGNKECPT--CRKKLV 101 (165)
T ss_dssp HHHBCTTTSSBCSSE-EEETTTCCEEEHHHHHHHHHTTCCBCTT--TCCBCC
T ss_pred CCCCCcccChHhhCc-CEeCCCCChhHHHHHHHHHHhCcCCCCC--CCCcCC
Confidence 346788888777653 22336788999999877 43 256999 998874
No 121
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=46.81 E-value=23 Score=16.70 Aligned_cols=26 Identities=12% Similarity=0.117 Sum_probs=13.6
Q ss_pred CCeeccHHHHhh-hC-CCCCCCCCCCCcch
Q psy4350 63 HGNIYCKQDFFR-YS-QARYPDLPIPKTLV 90 (107)
Q Consensus 63 ~~~~~C~~~y~~-~~-~~~C~~~~C~~~i~ 90 (107)
=+..||..|..+ +. ...|-. |...|.
T Consensus 27 CgH~fc~~Ci~~~~~~~~~CP~--Cr~~~~ 54 (55)
T 2ecm_A 27 CGHLLHRTCYEEMLKEGYRCPL--CSGPSS 54 (55)
T ss_dssp TSCEEETTHHHHHHHHTCCCTT--SCCSSC
T ss_pred CCCcccHHHHHHHHHcCCcCCC--CCCcCC
Confidence 345566666544 21 135666 666654
No 122
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=46.42 E-value=17 Score=20.06 Aligned_cols=44 Identities=18% Similarity=0.363 Sum_probs=31.0
Q ss_pred ccccccCCCCCCCCcee-ccCCeeccHHHHhh-hCC--CCCCCCCCCCcchh
Q psy4350 44 LQCAHCHVPLHSELSCF-SRHGNIYCKQDFFR-YSQ--ARYPDLPIPKTLVS 91 (107)
Q Consensus 44 f~C~~C~~~l~~~~~~~-~~~~~~~C~~~y~~-~~~--~~C~~~~C~~~i~~ 91 (107)
+.|..|...+.. ... ..=|..||..|..+ +.. ..|-. |...+..
T Consensus 23 ~~C~IC~~~~~~--p~~~~~CgH~FC~~Ci~~~~~~~~~~CP~--Cr~~~~~ 70 (100)
T 3lrq_A 23 FRCFICMEKLRD--ARLCPHCSKLCCFSCIRRWLTEQRAQCPH--CRAPLQL 70 (100)
T ss_dssp TBCTTTCSBCSS--EEECTTTCCEEEHHHHHHHHHHTCSBCTT--TCCBCCG
T ss_pred CCCccCCccccC--ccccCCCCChhhHHHHHHHHHHCcCCCCC--CCCcCCH
Confidence 677888877754 344 66788899999876 431 37888 9888753
No 123
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=46.08 E-value=29 Score=20.97 Aligned_cols=44 Identities=18% Similarity=0.440 Sum_probs=29.8
Q ss_pred ccccccCCCCCCCCceeccCCeeccHHHHhh-hC--CCCCCCCCCCCcchh
Q psy4350 44 LQCAHCHVPLHSELSCFSRHGNIYCKQDFFR-YS--QARYPDLPIPKTLVS 91 (107)
Q Consensus 44 f~C~~C~~~l~~~~~~~~~~~~~~C~~~y~~-~~--~~~C~~~~C~~~i~~ 91 (107)
+.|..|...+.. .....-|..||..|..+ +. ...|-. |...|..
T Consensus 19 ~~C~IC~~~~~~--pv~~~CgH~fC~~Ci~~~~~~~~~~CP~--Cr~~~~~ 65 (170)
T 3hcs_A 19 YECPICLMALRE--AVQTPCGHRFCKACIIKSIRDAGHKCPV--DNEILLE 65 (170)
T ss_dssp GBCTTTCSBCSS--EEECTTSCEEEHHHHHHHHHHHCSBCTT--TCCBCCG
T ss_pred CCCCCCChhhcC--cEECCCCCHHHHHHHHHHHHhCCCCCCC--CccCcch
Confidence 677777777655 34456778888888876 42 137887 8777754
No 124
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=46.07 E-value=23 Score=18.98 Aligned_cols=46 Identities=9% Similarity=0.028 Sum_probs=31.5
Q ss_pred ccccccccCCCCCCCCceeccCCeeccHHHHhh-hC-CCCCCCCCCCCcchh
Q psy4350 42 GCLQCAHCHVPLHSELSCFSRHGNIYCKQDFFR-YS-QARYPDLPIPKTLVS 91 (107)
Q Consensus 42 ~Cf~C~~C~~~l~~~~~~~~~~~~~~C~~~y~~-~~-~~~C~~~~C~~~i~~ 91 (107)
.-|.|..|...+.+ .+....|..||+.|-.+ +. ...|-. |+.++..
T Consensus 13 ~~~~CpI~~~~m~d--PV~~~cGhtf~r~~I~~~l~~~~~cP~--~~~~l~~ 60 (85)
T 2kr4_A 13 DEFRDPLMDTLMTD--PVRLPSGTVMDRSIILRHLLNSPTDPF--NRQMLTE 60 (85)
T ss_dssp TTTBCTTTCSBCSS--EEECTTSCEEEHHHHHHHHHHCSBCTT--TCCBCCG
T ss_pred hheECcccCchhcC--CeECCCCCEECHHHHHHHHhcCCCCCC--CcCCCCh
Confidence 45778888877765 45556888899988766 32 246777 7777653
No 125
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=45.75 E-value=29 Score=19.65 Aligned_cols=70 Identities=19% Similarity=0.371 Sum_probs=43.6
Q ss_pred CccccccccccCceEEeecCcccccccccccccCCCCCC-----CCceeccCCeeccHHHHhh-hC-CCCCCCCCCCCcc
Q psy4350 17 SSCGGCGQPIIDRFYLLAVDRQWHLGCLQCAHCHVPLHS-----ELSCFSRHGNIYCKQDFFR-YS-QARYPDLPIPKTL 89 (107)
Q Consensus 17 ~~C~~C~~~i~~~~~~~~~~~~~H~~Cf~C~~C~~~l~~-----~~~~~~~~~~~~C~~~y~~-~~-~~~C~~~~C~~~i 89 (107)
..|..|.+.+......... ....-..|..|...+.. .......-+..||..|..+ +. .+.|-. |...|
T Consensus 49 ~~CP~Cr~~~~~~~l~~l~---i~~~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~--Cr~~~ 123 (133)
T 4ap4_A 49 NTCPTCRKKINHKRYHPIY---IGSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPT--CRKKI 123 (133)
T ss_dssp SBCTTTCCBCTTTCEEECB---CSSSSCBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHHHCSBCTT--TCCBC
T ss_pred CCCCCCCCcCccccccccc---cCCCCCCCCCCCCccccccccCcceEeCCCCChhhHHHHHHHHHcCCCCCC--CCCcC
Confidence 4799999988765533221 12334567777765532 1013455678899999876 32 258888 88888
Q ss_pred hh
Q psy4350 90 VS 91 (107)
Q Consensus 90 ~~ 91 (107)
..
T Consensus 124 ~~ 125 (133)
T 4ap4_A 124 NH 125 (133)
T ss_dssp CG
T ss_pred Ch
Confidence 64
No 126
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=45.45 E-value=36 Score=18.87 Aligned_cols=46 Identities=7% Similarity=-0.102 Sum_probs=32.8
Q ss_pred cccccccccCCCCCCCCceeccCC-eeccHHHHhh-hC-CCCCCCCCCCCcch
Q psy4350 41 LGCLQCAHCHVPLHSELSCFSRHG-NIYCKQDFFR-YS-QARYPDLPIPKTLV 90 (107)
Q Consensus 41 ~~Cf~C~~C~~~l~~~~~~~~~~~-~~~C~~~y~~-~~-~~~C~~~~C~~~i~ 90 (107)
+.-|.|..|...+.+ .+....| ..||+.|-.+ +. ...|-. |+.++.
T Consensus 20 p~~~~CpI~~~~m~d--PV~~~cG~htf~r~cI~~~l~~~~~cP~--~~~~l~ 68 (98)
T 1wgm_A 20 CDEFLDPIMSTLMCD--PVVLPSSRVTVDRSTIARHLLSDQTDPF--NRSPLT 68 (98)
T ss_dssp CTTTBCTTTCSBCSS--EEECTTTCCEEEHHHHHHHTTTSCBCTT--TCSBCC
T ss_pred cHhcCCcCccccccC--CeECCCCCeEECHHHHHHHHHhCCCCCC--CCCCCC
Confidence 445788888877766 4556677 8999999877 53 246777 777765
No 127
>1uw0_A DNA ligase III; DNA repair, zinc finger, PARP-like finger, cell division, DNA replication, nuclear protein; HET: DNA; NMR {Homo sapiens} SCOP: g.39.1.12
Probab=44.49 E-value=13 Score=21.75 Aligned_cols=17 Identities=18% Similarity=0.563 Sum_probs=12.5
Q ss_pred CCCCccccccccccCce
Q psy4350 14 EEKSSCGGCGQPIIDRF 30 (107)
Q Consensus 14 ~~~~~C~~C~~~i~~~~ 30 (107)
++-..|..|.+.|.-.+
T Consensus 13 SgRA~Ck~C~~kI~Kge 29 (117)
T 1uw0_A 13 RGTAGCKKCKEKIVKGV 29 (117)
T ss_dssp SSCEECTTSSCEECTTC
T ss_pred CCCccchhhCcccCCCC
Confidence 34557999999997554
No 128
>3odc_A Poly [ADP-ribose] polymerase 1; protein-DNA complex, PARP zinc finger, DNA binding protein-D complex; 2.80A {Homo sapiens} PDB: 3ode_A 2l31_A
Probab=43.22 E-value=12 Score=21.76 Aligned_cols=33 Identities=30% Similarity=0.604 Sum_probs=20.5
Q ss_pred CCCCccccccccccCceE-Eee---------cC---cccccccccc
Q psy4350 14 EEKSSCGGCGQPIIDRFY-LLA---------VD---RQWHLGCLQC 46 (107)
Q Consensus 14 ~~~~~C~~C~~~i~~~~~-~~~---------~~---~~~H~~Cf~C 46 (107)
++-..|..|.+.|...++ +.. .| ..||..||.=
T Consensus 17 S~Ra~Ck~C~~kI~Kg~lRig~~~~~~~~~~~G~~~~W~H~~Cf~~ 62 (111)
T 3odc_A 17 SNRSTCKGCMEKIEKGQVRLSKKMVDPEKPQLGMIDRWYHPGCFVK 62 (111)
T ss_dssp SSCCBCTTTCCBCCTTCEEEEEEEEETTEEEEEEEEEEECHHHHHH
T ss_pred cCCccccccCCCccCCceEEeEEecCccccCCCCcceeEChhhccc
Confidence 445679999999975542 211 12 3478888863
No 129
>1vs6_Z 50S ribosomal protein L31; ribosome, kasugamycin; 3.46A {Escherichia coli} SCOP: d.325.1.2 PDB: 1vs8_Z 2aw4_Z 2awb_Z 2j28_Z 2rdo_Z 2vhm_Z 2vhn_Z 3bbx_Z 3e1b_S 3e1d_S 3iyx_A 3iyy_A 3izt_b* 3izu_b* 3j0t_2* 3j0w_2* 3j0y_2* 3j11_2* 3j12_2* 3j14_2*
Probab=42.87 E-value=9 Score=20.41 Aligned_cols=9 Identities=33% Similarity=0.811 Sum_probs=6.4
Q ss_pred ccCCCCcCC
Q psy4350 99 AASEPLLTG 107 (107)
Q Consensus 99 ~~~~p~~~~ 107 (107)
.+.||+.||
T Consensus 38 s~~HPFyTG 46 (70)
T 1vs6_Z 38 SKCHPFFTG 46 (70)
T ss_dssp SSSCCBCCC
T ss_pred CCCCccCcC
Confidence 457888776
No 130
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=42.86 E-value=35 Score=18.06 Aligned_cols=27 Identities=19% Similarity=0.287 Sum_probs=19.4
Q ss_pred CCeeccHHHHhh-hC--CCCCCCCCCCCcchh
Q psy4350 63 HGNIYCKQDFFR-YS--QARYPDLPIPKTLVS 91 (107)
Q Consensus 63 ~~~~~C~~~y~~-~~--~~~C~~~~C~~~i~~ 91 (107)
-|..||..|+.+ +. ...|-. |.+++..
T Consensus 33 CGH~fC~~Cl~~~~~~~~~~CP~--CR~~~~~ 62 (78)
T 1e4u_A 33 CGYQICRFCWHRIRTDENGLCPA--CRKPYPE 62 (78)
T ss_dssp TSCCCCHHHHHHHTTSSCSBCTT--TCCBCSS
T ss_pred CCCCcCHHHHHHHHhcCCCCCCC--CCCccCC
Confidence 566788888877 52 247888 8888764
No 131
>1ovx_A ATP-dependent CLP protease ATP-binding subunit CL; treble CLEF zinc finger, homodimer, metal binding protein; NMR {Escherichia coli} SCOP: g.39.1.11
Probab=42.44 E-value=25 Score=18.54 Aligned_cols=30 Identities=13% Similarity=0.217 Sum_probs=16.0
Q ss_pred cccccCCCCCCCCceeccCCeeccHHHHhh
Q psy4350 45 QCAHCHVPLHSELSCFSRHGNIYCKQDFFR 74 (107)
Q Consensus 45 ~C~~C~~~l~~~~~~~~~~~~~~C~~~y~~ 74 (107)
.|+.|++.-........-.+...|..|-..
T Consensus 20 ~CSFCGK~e~eV~~LIaGpgvyICdeCI~~ 49 (67)
T 1ovx_A 20 YCSFCGKSQHEVRKLIAGPSVYICDECVDL 49 (67)
T ss_dssp CCTTTCCCTTTSSSEEECSSCEEEHHHHHH
T ss_pred EecCCCCCHHHHcccCCCCCCChhHHHHHH
Confidence 577777655433233333344567777554
No 132
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=42.19 E-value=29 Score=19.48 Aligned_cols=45 Identities=13% Similarity=0.338 Sum_probs=31.3
Q ss_pred cccccccCCCCCCCCceeccCCeeccHHHHhh-hC--CCCCCCCCCCCcchh
Q psy4350 43 CLQCAHCHVPLHSELSCFSRHGNIYCKQDFFR-YS--QARYPDLPIPKTLVS 91 (107)
Q Consensus 43 Cf~C~~C~~~l~~~~~~~~~~~~~~C~~~y~~-~~--~~~C~~~~C~~~i~~ 91 (107)
=+.|..|...+.. .....-|..||..|..+ +. ...|-. |...+..
T Consensus 23 ~~~C~IC~~~~~~--p~~~~CgH~fC~~Ci~~~~~~~~~~CP~--Cr~~~~~ 70 (116)
T 1rmd_A 23 SISCQICEHILAD--PVETSCKHLFCRICILRCLKVMGSYCPS--CRYPCFP 70 (116)
T ss_dssp HTBCTTTCSBCSS--EEECTTSCEEEHHHHHHHHHHTCSBCTT--TCCBCCG
T ss_pred CCCCCCCCcHhcC--cEEcCCCCcccHHHHHHHHhHCcCcCCC--CCCCCCH
Confidence 3677888777654 34456788899999876 42 247888 8888764
No 133
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=41.94 E-value=23 Score=18.17 Aligned_cols=26 Identities=4% Similarity=-0.086 Sum_probs=13.0
Q ss_pred CCeeccHHHHhh-hC-CCCCCCCCCCCcch
Q psy4350 63 HGNIYCKQDFFR-YS-QARYPDLPIPKTLV 90 (107)
Q Consensus 63 ~~~~~C~~~y~~-~~-~~~C~~~~C~~~i~ 90 (107)
=+..||..|..+ +. ...|-. |...|.
T Consensus 44 C~H~fh~~Ci~~w~~~~~~CP~--Cr~~~~ 71 (75)
T 1x4j_A 44 CNHEFHAKCVDKWLKANRTCPI--CRADSG 71 (75)
T ss_dssp TTEEEETTHHHHHHHHCSSCTT--TCCCCC
T ss_pred CCCHhHHHHHHHHHHcCCcCcC--cCCcCC
Confidence 445555555543 21 135666 666553
No 134
>3v2d_4 50S ribosomal protein L31; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 2hgq_3 2hgj_3 2hgu_3 2j03_4 2v47_4 2v49_4 2wdi_4 2wdj_4 2wdl_4 2wdn_4 2wh2_4 2wrj_4 2wrl_4 2wro_4 2wrr_4 2x9s_4 2x9u_4 2xg0_4 2xg2_4 2xqe_4 ...
Probab=41.93 E-value=9.2 Score=20.47 Aligned_cols=8 Identities=38% Similarity=0.783 Sum_probs=5.4
Q ss_pred cCCCCcCC
Q psy4350 100 ASEPLLTG 107 (107)
Q Consensus 100 ~~~p~~~~ 107 (107)
+.||+.||
T Consensus 38 ~~HPFyTG 45 (71)
T 3v2d_4 38 KCHPFYTG 45 (71)
T ss_dssp TTSSSSSC
T ss_pred CCCCCCCC
Confidence 46777776
No 135
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=41.85 E-value=30 Score=20.73 Aligned_cols=45 Identities=16% Similarity=0.258 Sum_probs=32.8
Q ss_pred cccccccCCCCCCCCceeccCCeeccHHHHhh-hC--CCCCCCCCCCCcchh
Q psy4350 43 CLQCAHCHVPLHSELSCFSRHGNIYCKQDFFR-YS--QARYPDLPIPKTLVS 91 (107)
Q Consensus 43 Cf~C~~C~~~l~~~~~~~~~~~~~~C~~~y~~-~~--~~~C~~~~C~~~i~~ 91 (107)
-+.|..|...+.. .....-+..||..|..+ +. ...|-. |...+..
T Consensus 78 ~~~C~IC~~~~~~--pv~~~CgH~fC~~Ci~~~~~~~~~~CP~--Cr~~~~~ 125 (150)
T 1z6u_A 78 SFMCVCCQELVYQ--PVTTECFHNVCKDCLQRSFKAQVFSCPA--CRHDLGQ 125 (150)
T ss_dssp HTBCTTTSSBCSS--EEECTTSCEEEHHHHHHHHHTTCCBCTT--TCCBCCT
T ss_pred CCEeecCChhhcC--CEEcCCCCchhHHHHHHHHHhCCCcCCC--CCccCCC
Confidence 4678888877765 34567788999999877 43 136888 9888764
No 136
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=41.32 E-value=12 Score=19.36 Aligned_cols=31 Identities=23% Similarity=0.438 Sum_probs=19.0
Q ss_pred CCCCccccccccccCc-eEEeec---Ccccccccc
Q psy4350 14 EEKSSCGGCGQPIIDR-FYLLAV---DRQWHLGCL 44 (107)
Q Consensus 14 ~~~~~C~~C~~~i~~~-~~~~~~---~~~~H~~Cf 44 (107)
.....|..|.+++.+. ..|.-. .+.||..|.
T Consensus 6 ~~~~~C~~C~~p~~~~~~mI~CD~~C~~WfH~~Cv 40 (65)
T 2vpb_A 6 DPVYPCGICTNEVNDDQDAILCEASCQKWFHRICT 40 (65)
T ss_dssp ---CBCTTTCSBCCTTSCEEEBTTTTCCEEEHHHH
T ss_pred CCcCcCccCCCccCCCCCeEecccCccccCchhcc
Confidence 3445699999998643 335444 566887764
No 137
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=41.14 E-value=27 Score=18.29 Aligned_cols=46 Identities=22% Similarity=0.364 Sum_probs=27.7
Q ss_pred ccccccCCCCCCCC--ceeccCCeeccHHHHhh-hC----CCCCCCCCCCCcchh
Q psy4350 44 LQCAHCHVPLHSEL--SCFSRHGNIYCKQDFFR-YS----QARYPDLPIPKTLVS 91 (107)
Q Consensus 44 f~C~~C~~~l~~~~--~~~~~~~~~~C~~~y~~-~~----~~~C~~~~C~~~i~~ 91 (107)
+.|..|...+.... .....=+..||..|..+ +. ...|-. |...+..
T Consensus 16 ~~C~IC~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~--Cr~~~~~ 68 (88)
T 2ct2_A 16 LECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPF--CSKITRI 68 (88)
T ss_dssp CBCTTTCCBCCTTSSCEEECSSSCEEEHHHHHHHHHHCSSCBCCTT--TCCCBCC
T ss_pred CCCccCCccccccCCCeEECCCCChhhHHHHHHHHHcCCCCcCCCC--CCCcccc
Confidence 45666665554421 23345667788888776 32 147888 8887753
No 138
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=41.14 E-value=21 Score=18.36 Aligned_cols=43 Identities=21% Similarity=0.355 Sum_probs=27.4
Q ss_pred ccccccCCCCCCCCceecc-CCeeccHHHHhh-hC---CCCCCCCCCCCcch
Q psy4350 44 LQCAHCHVPLHSELSCFSR-HGNIYCKQDFFR-YS---QARYPDLPIPKTLV 90 (107)
Q Consensus 44 f~C~~C~~~l~~~~~~~~~-~~~~~C~~~y~~-~~---~~~C~~~~C~~~i~ 90 (107)
+.|..|...+... .... =+..||..|..+ +. ...|-. |...+.
T Consensus 16 ~~C~IC~~~~~~p--~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~--Cr~~~~ 63 (74)
T 2yur_A 16 LLCLICKDIMTDA--VVIPCCGNSYCDECIRTALLESDEHTCPT--CHQNDV 63 (74)
T ss_dssp GSCSSSCCCCTTC--EECSSSCCEECTTHHHHHHHHSSSSCCSS--SCCSSC
T ss_pred CCCcCCChHHhCC--eEcCCCCCHHHHHHHHHHHHhcCCCcCCC--CCCcCC
Confidence 5677776666543 3344 477888888766 42 136888 887643
No 139
>2ds5_A CLPX, ATP-dependent CLP protease ATP-binding subunit CLPX; treble cleft zinc finger, metal binding protein, protein binding; HET: PG4; 1.50A {Escherichia coli} SCOP: g.39.1.11 PDB: 2ds6_A 2ds8_A 2ds7_A
Probab=41.04 E-value=27 Score=17.26 Aligned_cols=29 Identities=14% Similarity=0.250 Sum_probs=14.3
Q ss_pred cccccCCCCCCCCceeccCCeeccHHHHh
Q psy4350 45 QCAHCHVPLHSELSCFSRHGNIYCKQDFF 73 (107)
Q Consensus 45 ~C~~C~~~l~~~~~~~~~~~~~~C~~~y~ 73 (107)
.|+.|++.-..........+...|..|-.
T Consensus 13 ~CSFCGk~~~ev~~LIaGpgv~IC~eCi~ 41 (51)
T 2ds5_A 13 YCSFCGKSQHEVRKLIAGPSVYICDECVD 41 (51)
T ss_dssp BCTTTCCBTTTSSCEEECSSCEEEHHHHH
T ss_pred EecCCCCCHHHhcccCCCCCCEehHHHHH
Confidence 56666665443212332234455766654
No 140
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=40.66 E-value=30 Score=19.60 Aligned_cols=43 Identities=19% Similarity=0.449 Sum_probs=20.0
Q ss_pred ccccccCCCCCCCCceeccCCeeccHHHHhh-hC--CCCCCCCCCCCcch
Q psy4350 44 LQCAHCHVPLHSELSCFSRHGNIYCKQDFFR-YS--QARYPDLPIPKTLV 90 (107)
Q Consensus 44 f~C~~C~~~l~~~~~~~~~~~~~~C~~~y~~-~~--~~~C~~~~C~~~i~ 90 (107)
+.|..|...+.. .....-+..||..|..+ +. ...|-. |...+.
T Consensus 19 ~~C~IC~~~~~~--p~~~~CgH~fC~~Ci~~~~~~~~~~CP~--Cr~~~~ 64 (118)
T 3hct_A 19 YECPICLMALRE--AVQTPCGHRFCKACIIKSIRDAGHKCPV--DNEILL 64 (118)
T ss_dssp GBCTTTCSBCSS--EEECTTSCEEEHHHHHHHHHHHCSBCTT--TCCBCC
T ss_pred CCCCcCChhhcC--eEECCcCChhhHHHHHHHHhhCCCCCCC--CCCCcC
Confidence 445555544433 22334555566666544 21 125555 555554
No 141
>2das_A Zinc finger MYM-type protein 5; trash domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.17
Probab=39.41 E-value=21 Score=18.46 Aligned_cols=26 Identities=31% Similarity=1.008 Sum_probs=14.4
Q ss_pred ccccccCCCCCCCCceeccCC--eeccH
Q psy4350 44 LQCAHCHVPLHSELSCFSRHG--NIYCK 69 (107)
Q Consensus 44 f~C~~C~~~l~~~~~~~~~~~--~~~C~ 69 (107)
..|..|.+.|......+.+.+ ++||-
T Consensus 21 v~C~~CKk~lqKGQtAyqrkGs~~LFCS 48 (62)
T 2das_A 21 ITCANCKKPLQKGQTAYQRKGSAHLFCS 48 (62)
T ss_dssp CBCTTTCCBCCTTSCCEECTTCCCEESS
T ss_pred cChhhccchhhcCceeeeecCchhheec
Confidence 456777777754323444443 55663
No 142
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=38.21 E-value=42 Score=17.18 Aligned_cols=11 Identities=27% Similarity=0.338 Sum_probs=6.4
Q ss_pred CCCCCCCCCcchh
Q psy4350 79 RYPDLPIPKTLVS 91 (107)
Q Consensus 79 ~C~~~~C~~~i~~ 91 (107)
.|-. |...|..
T Consensus 54 ~CP~--Cr~~~~~ 64 (78)
T 2ect_A 54 SCPV--CRKSLTG 64 (78)
T ss_dssp SCTT--TCCCCCC
T ss_pred cCcC--cCCccCC
Confidence 5555 6666654
No 143
>1nkw_Y 50S ribosomal protein L31; ribosome, large subunit, X- RAY structure, peptidyl-transferase, peptide bond formation; 3.10A {Deinococcus radiodurans} SCOP: i.1.1.2 PDB: 1nwx_Y* 1nwy_Y* 1pnu_Y 1pny_Y 1sm1_Y* 1vor_1 1vou_1 1vow_1 1voy_1 1vp0_1 1xbp_Y* 1yl3_4 2b66_4 2b9n_4 2b9p_4
Probab=37.39 E-value=11 Score=20.27 Aligned_cols=10 Identities=30% Similarity=0.501 Sum_probs=6.6
Q ss_pred cccCCCCcCC
Q psy4350 98 GAASEPLLTG 107 (107)
Q Consensus 98 g~~~~p~~~~ 107 (107)
-.+.||+.||
T Consensus 36 ~s~~HPFyTG 45 (73)
T 1nkw_Y 36 WSGVHPFWTG 45 (73)
T ss_pred CCCCCcCCcC
Confidence 4456777776
No 144
>2csz_A Synaptotagmin-like protein 4; exophilin 2, granuphilin, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=33.95 E-value=58 Score=17.55 Aligned_cols=24 Identities=13% Similarity=0.394 Sum_probs=14.7
Q ss_pred CCCCCCCCCCCCCCCccccccccc
Q psy4350 3 KDRDDSSSPCPEEKSSCGGCGQPI 26 (107)
Q Consensus 3 ~~~~~~~~~~~~~~~~C~~C~~~i 26 (107)
+++-.....-..+...|..|.+.+
T Consensus 12 rrkgak~~s~~~~~r~CarC~~~L 35 (76)
T 2csz_A 12 KRKGAKRGSQHYSDRTCARCQESL 35 (76)
T ss_dssp CCCCSCSCCTTCCCCBCSSSCCBC
T ss_pred HHccccCcCcCCCccchhhhCccc
Confidence 334333344467778899998765
No 145
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=33.57 E-value=50 Score=16.66 Aligned_cols=27 Identities=4% Similarity=0.143 Sum_probs=15.4
Q ss_pred CCeeccHHHHhh-hC-CCCCCCCCCCCcchh
Q psy4350 63 HGNIYCKQDFFR-YS-QARYPDLPIPKTLVS 91 (107)
Q Consensus 63 ~~~~~C~~~y~~-~~-~~~C~~~~C~~~i~~ 91 (107)
=+..||..|..+ +. ...|-. |...|..
T Consensus 36 C~H~f~~~Ci~~~~~~~~~CP~--Cr~~~~~ 64 (74)
T 2ep4_A 36 CKHAFHRKCLIKWLEVRKVCPL--CNMPVLQ 64 (74)
T ss_dssp TTEEEEHHHHHHHHHHCSBCTT--TCCBCSS
T ss_pred CCCEecHHHHHHHHHcCCcCCC--cCccccc
Confidence 455666666654 22 136766 7777654
No 146
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=33.34 E-value=45 Score=21.50 Aligned_cols=48 Identities=15% Similarity=0.144 Sum_probs=34.5
Q ss_pred ccccccccccCCCCCCCCceeccCCeeccHHHHhh-hC--CCCCCCCCCCCcchh
Q psy4350 40 HLGCLQCAHCHVPLHSELSCFSRHGNIYCKQDFFR-YS--QARYPDLPIPKTLVS 91 (107)
Q Consensus 40 H~~Cf~C~~C~~~l~~~~~~~~~~~~~~C~~~y~~-~~--~~~C~~~~C~~~i~~ 91 (107)
-+.-|.|..|...+.+ .+....|..||+.|-.+ +. ...|-. |+.++..
T Consensus 205 ~~~~~~c~i~~~~~~d--Pv~~~~gh~f~~~~i~~~~~~~~~~cP~--~~~~~~~ 255 (281)
T 2c2l_A 205 IPDYLCGKISFELMRE--PCITPSGITYDRKDIEEHLQRVGHFNPV--TRSPLTQ 255 (281)
T ss_dssp CCSTTBCTTTCSBCSS--EEECSSCCEEETTHHHHHHHHTCSSCTT--TCCCCCG
T ss_pred CCcccCCcCcCCHhcC--CeECCCCCEECHHHHHHHHHHCCCCCcC--CCCCCch
Confidence 3456888888887766 45666899999999776 42 234888 8888763
No 147
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=32.58 E-value=41 Score=16.54 Aligned_cols=30 Identities=13% Similarity=0.247 Sum_probs=20.3
Q ss_pred eccCCeeccHHHHhh-hC--CCCCCCCCCCCcchh
Q psy4350 60 FSRHGNIYCKQDFFR-YS--QARYPDLPIPKTLVS 91 (107)
Q Consensus 60 ~~~~~~~~C~~~y~~-~~--~~~C~~~~C~~~i~~ 91 (107)
...=|..||..|..+ +. ...|-. |...+..
T Consensus 23 ~~~CgH~fC~~Ci~~~~~~~~~~CP~--Cr~~~~~ 55 (65)
T 1g25_A 23 VNVCGHTLCESCVDLLFVRGAGNCPE--CGTPLRK 55 (65)
T ss_dssp ECTTCCCEEHHHHHHHHHTTSSSCTT--TCCCCSS
T ss_pred cCCCCCHhHHHHHHHHHHcCCCcCCC--CCCcccc
Confidence 345667788888776 32 246888 8888754
No 148
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=31.36 E-value=57 Score=16.71 Aligned_cols=42 Identities=19% Similarity=0.215 Sum_probs=27.6
Q ss_pred ccccccCCCCCCCCceeccCCee-ccHHHHhhhCCCCCCCCCCCCcchh
Q psy4350 44 LQCAHCHVPLHSELSCFSRHGNI-YCKQDFFRYSQARYPDLPIPKTLVS 91 (107)
Q Consensus 44 f~C~~C~~~l~~~~~~~~~~~~~-~C~~~y~~~~~~~C~~~~C~~~i~~ 91 (107)
+.|..|...+.. .....=+.. +|..|..++ ..|-. |...|..
T Consensus 25 ~~C~iC~~~~~~--~~~~pCgH~~~C~~C~~~~--~~CP~--Cr~~i~~ 67 (74)
T 4ic3_A 25 KLCKICMDRNIA--IVFVPCGHLVTCKQCAEAV--DKCPM--CYTVITF 67 (74)
T ss_dssp TBCTTTSSSBCC--EEEETTCCBCCCHHHHTTC--SBCTT--TCCBCSE
T ss_pred CCCCCCCCCCCC--EEEcCCCChhHHHHhhhcC--ccCCC--cCcCccC
Confidence 456666665544 234456666 899997764 36877 8888764
No 149
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=30.95 E-value=19 Score=17.57 Aligned_cols=29 Identities=17% Similarity=0.397 Sum_probs=16.1
Q ss_pred ccCCeeccHHHHhh-hC-CCCCCCCCCCCcchh
Q psy4350 61 SRHGNIYCKQDFFR-YS-QARYPDLPIPKTLVS 91 (107)
Q Consensus 61 ~~~~~~~C~~~y~~-~~-~~~C~~~~C~~~i~~ 91 (107)
..-+..||..|..+ +. ...|-. |...+..
T Consensus 26 ~~CgH~fc~~Ci~~~~~~~~~CP~--Cr~~~~~ 56 (64)
T 2xeu_A 26 TECGHVFCSQCLRDSLKNANTCPT--CRKKINH 56 (64)
T ss_dssp ETTSCEEEHHHHHHHHHHCSBCTT--TCCBCTT
T ss_pred CCCCCchhHHHHHHHHHcCCCCCC--CCccCCc
Confidence 34455667766654 32 235666 6666653
No 150
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=30.47 E-value=45 Score=18.38 Aligned_cols=53 Identities=23% Similarity=0.305 Sum_probs=30.9
Q ss_pred CCCCCCccccccccccCceEE--eecCcccccccccccccCCCCCCCCceeccCCeeccHHHHhh
Q psy4350 12 CPEEKSSCGGCGQPIIDRFYL--LAVDRQWHLGCLQCAHCHVPLHSELSCFSRHGNIYCKQDFFR 74 (107)
Q Consensus 12 ~~~~~~~C~~C~~~i~~~~~~--~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~~C~~~y~~ 74 (107)
.......|..|+..-....++ ..-...||..|..- +|.. ...+.-||..|-.+
T Consensus 12 ~~~~~~~C~vC~~~~~~~~ll~CD~C~~~~H~~Cl~P-----pl~~-----~P~g~W~C~~C~~~ 66 (92)
T 2e6r_A 12 QFIDSYICQVCSRGDEDDKLLFCDGCDDNYHIFCLLP-----PLPE-----IPRGIWRCPKCILA 66 (92)
T ss_dssp CCCCCCCCSSSCCSGGGGGCEECTTTCCEECSSSSSS-----CCSS-----CCSSCCCCHHHHHH
T ss_pred hccCCCCCccCCCcCCCCCEEEcCCCCchhccccCCC-----Cccc-----CCCCCcCCccCcCc
Confidence 334455799998865433333 23456799887632 2321 22456689988764
No 151
>2lo3_A SAGA-associated factor 73; zinc-finger, deubiquitination, transcription factor, SAGA CO transcription; NMR {Saccharomyces cerevisiae}
Probab=30.37 E-value=14 Score=17.70 Aligned_cols=17 Identities=29% Similarity=0.743 Sum_probs=12.0
Q ss_pred CCCCCccccccccccCc
Q psy4350 13 PEEKSSCGGCGQPIIDR 29 (107)
Q Consensus 13 ~~~~~~C~~C~~~i~~~ 29 (107)
+...+.|..|+++|.-.
T Consensus 14 ~~~YRvC~~CgkPi~ls 30 (44)
T 2lo3_A 14 PIQYRVCEKCGKPLALT 30 (44)
T ss_dssp CCCEEECTTTCCEEETT
T ss_pred cccchhhcccCCcchHH
Confidence 34457799999988543
No 152
>2cs2_A Poly [ADP-ribose] polymerase-1; DNA BIND, DNA repair, necrosis, apoptosis, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=29.84 E-value=33 Score=20.54 Aligned_cols=17 Identities=29% Similarity=0.624 Sum_probs=12.4
Q ss_pred CCCCccccccccccCce
Q psy4350 14 EEKSSCGGCGQPIIDRF 30 (107)
Q Consensus 14 ~~~~~C~~C~~~i~~~~ 30 (107)
++-..|..|.+.|.-.+
T Consensus 25 SgRA~CK~C~~kI~Kge 41 (134)
T 2cs2_A 25 SNRSTCKGCMEKIEKGQ 41 (134)
T ss_dssp SSCCBCSSSCCBCCTTS
T ss_pred CCCccchhcCCcccCCC
Confidence 34457999999997544
No 153
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=29.78 E-value=62 Score=16.57 Aligned_cols=42 Identities=19% Similarity=0.208 Sum_probs=27.3
Q ss_pred ccccccCCCCCCCCceeccCCee-ccHHHHhhhCCCCCCCCCCCCcchh
Q psy4350 44 LQCAHCHVPLHSELSCFSRHGNI-YCKQDFFRYSQARYPDLPIPKTLVS 91 (107)
Q Consensus 44 f~C~~C~~~l~~~~~~~~~~~~~-~C~~~y~~~~~~~C~~~~C~~~i~~ 91 (107)
+.|..|...+... ....=+.. +|..|..+. ..|-. |...|..
T Consensus 26 ~~C~IC~~~~~~~--~~~pCgH~~~C~~C~~~~--~~CP~--Cr~~i~~ 68 (75)
T 2ecg_A 26 KLCKICMDRNIAI--VFVPCGHLVTCKQCAEAV--DKCPM--CYTVITF 68 (75)
T ss_dssp HSCSSSCSSCCCB--CCSSSCCCCBCHHHHHHC--SBCTT--TCCBCCC
T ss_pred CCCCcCCCCCCCE--EEecCCCHHHHHHHhhCC--CCCcc--CCceecC
Confidence 4566666555442 33455666 899998653 36888 8888864
No 154
>1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1
Probab=29.08 E-value=16 Score=17.58 Aligned_cols=12 Identities=25% Similarity=0.733 Sum_probs=6.6
Q ss_pred ccccccCCCCCC
Q psy4350 44 LQCAHCHVPLHS 55 (107)
Q Consensus 44 f~C~~C~~~l~~ 55 (107)
+.|..|+..+..
T Consensus 25 lvC~~CG~v~~e 36 (50)
T 1pft_A 25 IVCAKCGYVIEE 36 (50)
T ss_dssp EEESSSCCBCCC
T ss_pred EECcccCCcccc
Confidence 456666655543
No 155
>2jny_A Uncharacterized BCR; structure, CGR1, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: b.171.1.1
Probab=27.62 E-value=27 Score=18.32 Aligned_cols=24 Identities=17% Similarity=0.254 Sum_probs=11.1
Q ss_pred ccccccCCCCCCCCceeccCCeeccHHH
Q psy4350 44 LQCAHCHVPLHSELSCFSRHGNIYCKQD 71 (107)
Q Consensus 44 f~C~~C~~~l~~~~~~~~~~~~~~C~~~ 71 (107)
++|..|..+| .+...++.++|..|
T Consensus 11 L~CP~ck~~L----~~~~~~g~LvC~~c 34 (67)
T 2jny_A 11 LACPKDKGPL----RYLESEQLLVNERL 34 (67)
T ss_dssp CBCTTTCCBC----EEETTTTEEEETTT
T ss_pred hCCCCCCCcC----eEeCCCCEEEcCCC
Confidence 4455555544 22333455555444
No 156
>2hf1_A Tetraacyldisaccharide-1-P 4-kinase; LPXK, lipid A biosynthes structural genomics, PSI-2, protein structure initiative; 1.90A {Chromobacterium violaceum} SCOP: b.171.1.1
Probab=27.46 E-value=27 Score=18.33 Aligned_cols=24 Identities=33% Similarity=0.674 Sum_probs=10.7
Q ss_pred ccccccCCCCCCCCceeccCCeeccHHH
Q psy4350 44 LQCAHCHVPLHSELSCFSRHGNIYCKQD 71 (107)
Q Consensus 44 f~C~~C~~~l~~~~~~~~~~~~~~C~~~ 71 (107)
++|..|+.+| .+...++.++|..|
T Consensus 9 L~CP~ck~~L----~~~~~~~~LiC~~c 32 (68)
T 2hf1_A 9 LVCPLCKGPL----VFDKSKDELICKGD 32 (68)
T ss_dssp CBCTTTCCBC----EEETTTTEEEETTT
T ss_pred eECCCCCCcC----eEeCCCCEEEcCCC
Confidence 3455555444 22233445555444
No 157
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=27.45 E-value=61 Score=15.73 Aligned_cols=29 Identities=17% Similarity=0.356 Sum_probs=19.5
Q ss_pred ccccccCCCCCCCCceeccCCeeccHHHHhh
Q psy4350 44 LQCAHCHVPLHSELSCFSRHGNIYCKQDFFR 74 (107)
Q Consensus 44 f~C~~C~~~l~~~~~~~~~~~~~~C~~~y~~ 74 (107)
+.|..|...+... ....=+..||..|..+
T Consensus 21 ~~C~IC~~~~~~p--~~~~CgH~fC~~Ci~~ 49 (63)
T 2ysj_A 21 VICPICLDILQKP--VTIDCGHNFCLKCITQ 49 (63)
T ss_dssp CBCTTTCSBCSSC--EECTTSSEECHHHHHH
T ss_pred CCCCcCCchhCCe--EEeCCCCcchHHHHHH
Confidence 5677777666543 3446777888888776
No 158
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=27.36 E-value=41 Score=17.67 Aligned_cols=10 Identities=20% Similarity=0.713 Sum_probs=5.4
Q ss_pred Cccccccccc
Q psy4350 17 SSCGGCGQPI 26 (107)
Q Consensus 17 ~~C~~C~~~i 26 (107)
..|+-|...+
T Consensus 16 ~~C~IC~~~~ 25 (81)
T 2ecl_A 16 DTCAICRVQV 25 (81)
T ss_dssp SCBTTTTBCT
T ss_pred CCCcccChhh
Confidence 3466665544
No 159
>2jr6_A UPF0434 protein NMA0874; solution, structural genomics, PSI, structure initiative, northeast structural genomics consort NESG; NMR {Neisseria meningitidis}
Probab=27.06 E-value=28 Score=18.26 Aligned_cols=9 Identities=22% Similarity=0.305 Sum_probs=3.8
Q ss_pred cccccCCCC
Q psy4350 45 QCAHCHVPL 53 (107)
Q Consensus 45 ~C~~C~~~l 53 (107)
+|..|+.+|
T Consensus 10 ~CP~ck~~L 18 (68)
T 2jr6_A 10 VCPVTKGRL 18 (68)
T ss_dssp BCSSSCCBC
T ss_pred ECCCCCCcC
Confidence 444444433
No 160
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=26.97 E-value=36 Score=16.44 Aligned_cols=9 Identities=11% Similarity=0.095 Sum_probs=4.3
Q ss_pred CCCCCCCCCcc
Q psy4350 79 RYPDLPIPKTL 89 (107)
Q Consensus 79 ~C~~~~C~~~i 89 (107)
.|-. |...+
T Consensus 39 ~CP~--Cr~~~ 47 (56)
T 1bor_A 39 QCPI--CQAPW 47 (56)
T ss_dssp SCSS--CCSSS
T ss_pred CCCc--CCcEe
Confidence 4444 55444
No 161
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=26.51 E-value=61 Score=15.83 Aligned_cols=31 Identities=26% Similarity=0.552 Sum_probs=18.9
Q ss_pred CCCCCCccccccccccCceEE--eecCccccccccc
Q psy4350 12 CPEEKSSCGGCGQPIIDRFYL--LAVDRQWHLGCLQ 45 (107)
Q Consensus 12 ~~~~~~~C~~C~~~i~~~~~~--~~~~~~~H~~Cf~ 45 (107)
.......|..|++. ..++ ..-.+.||..|..
T Consensus 5 ~~~~~~~C~vC~~~---g~ll~Cd~C~~~~H~~Cl~ 37 (56)
T 2yql_A 5 SSGHEDFCSVCRKS---GQLLMCDTCSRVYHLDCLD 37 (56)
T ss_dssp CCSSCCSCSSSCCS---SCCEECSSSSCEECSSSSS
T ss_pred cCCCCCCCccCCCC---CeEEEcCCCCcceECccCC
Confidence 34445668888874 2333 3345778988764
No 162
>1twf_J DNA-directed RNA polymerases I, II, and III 8.3 K polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: a.4.11.1 PDB: 1i3q_J 1i6h_J 1k83_J* 1nik_J 1nt9_J 1pqv_J 1r5u_J 1r9s_J* 1r9t_J* 1sfo_J* 1twa_J* 1twc_J* 1i50_J* 1twg_J* 1twh_J* 1wcm_J 1y1v_J 1y1w_J 1y1y_J 1y77_J* ...
Probab=25.41 E-value=27 Score=18.58 Aligned_cols=13 Identities=31% Similarity=0.667 Sum_probs=8.6
Q ss_pred CCccccccccccC
Q psy4350 16 KSSCGGCGQPIID 28 (107)
Q Consensus 16 ~~~C~~C~~~i~~ 28 (107)
+.+|..|+++|.+
T Consensus 4 PVRCFTCGkvi~~ 16 (70)
T 1twf_J 4 PVRCFSCGKVVGD 16 (70)
T ss_dssp CSBCTTTCCBCTT
T ss_pred CeecCCCCCChHH
Confidence 4567777777754
No 163
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=25.31 E-value=84 Score=16.64 Aligned_cols=20 Identities=20% Similarity=0.237 Sum_probs=13.5
Q ss_pred CCCCCCCCCCcccccccccc
Q psy4350 8 SSSPCPEEKSSCGGCGQPII 27 (107)
Q Consensus 8 ~~~~~~~~~~~C~~C~~~i~ 27 (107)
.++..+.....|.-|.....
T Consensus 7 ~~s~~~~~~~~C~IC~~~~~ 26 (80)
T 2d8s_A 7 GTSITPSSQDICRICHCEGD 26 (80)
T ss_dssp CCCCCCTTSCCCSSSCCCCC
T ss_pred CCCCCCCCCCCCeEcCcccc
Confidence 34555666678999987654
No 164
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=25.16 E-value=1.1e+02 Score=19.14 Aligned_cols=47 Identities=15% Similarity=0.152 Sum_probs=34.5
Q ss_pred cccccccccCCCCCCCCceeccCCeeccHHHHhh-hC--CCCCCCCCCCCcchh
Q psy4350 41 LGCLQCAHCHVPLHSELSCFSRHGNIYCKQDFFR-YS--QARYPDLPIPKTLVS 91 (107)
Q Consensus 41 ~~Cf~C~~C~~~l~~~~~~~~~~~~~~C~~~y~~-~~--~~~C~~~~C~~~i~~ 91 (107)
+.-|.|..|...+.+ .+....|..||+.|-.+ +. ...|-. |+.++..
T Consensus 104 p~~f~CPI~~elm~D--PV~~~~Ghtfer~~I~~~l~~~~~tcP~--t~~~l~~ 153 (179)
T 2f42_A 104 PDYLCGKISFELMRE--PCITPSGITYDRKDIEEHLQRVGHFDPV--TRSPLTQ 153 (179)
T ss_dssp CGGGBCTTTCSBCSS--EEECTTSCEEEHHHHHHHHHHTCSBCTT--TCCBCCG
T ss_pred cHhhcccCccccCCC--CeECCCCCEECHHHHHHHHHhCCCCCCC--CcCCCCh
Confidence 566889998887766 46667899999999766 42 124888 8887754
No 165
>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR {Xenopus laevis} SCOP: g.37.1.1
Probab=25.04 E-value=32 Score=12.70 Aligned_cols=11 Identities=18% Similarity=0.664 Sum_probs=5.6
Q ss_pred ccccccCCCCC
Q psy4350 44 LQCAHCHVPLH 54 (107)
Q Consensus 44 f~C~~C~~~l~ 54 (107)
|.|..|++...
T Consensus 2 ~~C~~C~k~f~ 12 (27)
T 1znf_A 2 YKCGLCERSFV 12 (27)
T ss_dssp CBCSSSCCBCS
T ss_pred ccCCCCCCcCC
Confidence 34555555443
No 166
>3bbo_1 Ribosomal protein L31; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=24.81 E-value=26 Score=21.34 Aligned_cols=10 Identities=20% Similarity=0.461 Sum_probs=7.5
Q ss_pred cccCCCCcCC
Q psy4350 98 GAASEPLLTG 107 (107)
Q Consensus 98 g~~~~p~~~~ 107 (107)
-.+.||+.||
T Consensus 85 cS~cHPFYTG 94 (144)
T 3bbo_1 85 WSGNHPFYLG 94 (144)
T ss_dssp SCCCCCSSSS
T ss_pred cCCCCccEeC
Confidence 4557888887
No 167
>3d00_A Tungsten formylmethanofuran dehydrogenase subunit; FWDE/GAPDH domain-like fold, structural genomics, joint CENT structural genomics; HET: MSE; 1.90A {Syntrophus aciditrophicus}
Probab=24.72 E-value=15 Score=23.35 Aligned_cols=26 Identities=12% Similarity=0.238 Sum_probs=17.5
Q ss_pred ccccccccCCCCCCCCceeccCCeeccHHHHhh
Q psy4350 42 GCLQCAHCHVPLHSELSCFSRHGNIYCKQDFFR 74 (107)
Q Consensus 42 ~Cf~C~~C~~~l~~~~~~~~~~~~~~C~~~y~~ 74 (107)
.-..|..|+..... . ++.+|..|+.+
T Consensus 162 ~~~~C~~CGE~~~~------~-g~~~C~~C~~~ 187 (191)
T 3d00_A 162 KIVLCPQCREAYPA------Q-DGELCLSCQGG 187 (191)
T ss_dssp CEEECTTTCCEEEG------G-GCSSCHHHHTT
T ss_pred CCEECCcCCCChhh------C-CCcCCccccCC
Confidence 34567888754322 2 78899999865
No 168
>2js4_A UPF0434 protein BB2007; NESG, northeast structural genomics consortium, beta, PSI-2, protein structure initiative; NMR {Bordetella bronchiseptica RB50}
Probab=24.62 E-value=26 Score=18.49 Aligned_cols=9 Identities=33% Similarity=0.748 Sum_probs=3.8
Q ss_pred cccccCCCC
Q psy4350 45 QCAHCHVPL 53 (107)
Q Consensus 45 ~C~~C~~~l 53 (107)
+|..|+.+|
T Consensus 10 ~CP~ck~~L 18 (70)
T 2js4_A 10 VCPVCKGRL 18 (70)
T ss_dssp BCTTTCCBE
T ss_pred ECCCCCCcC
Confidence 444444433
No 169
>2pk7_A Uncharacterized protein; NESG, PLR1, putative tetraacyldisaccharide-1-P 4-kinase, Q4K structural genomics, PSI-2; 2.20A {Pseudomonas fluorescens} SCOP: b.171.1.1
Probab=24.37 E-value=29 Score=18.25 Aligned_cols=10 Identities=50% Similarity=1.125 Sum_probs=4.9
Q ss_pred ccccccCCCC
Q psy4350 44 LQCAHCHVPL 53 (107)
Q Consensus 44 f~C~~C~~~l 53 (107)
++|..|+.+|
T Consensus 9 L~CP~ck~~L 18 (69)
T 2pk7_A 9 LACPICKGPL 18 (69)
T ss_dssp CCCTTTCCCC
T ss_pred eeCCCCCCcC
Confidence 3455555444
No 170
>1ef4_A Subunit N, DNA-directed RNA polymerase; three helix bundle, zinc binding, structural genomics, PSI; NMR {Methanothermobacterthermautotrophicus} SCOP: a.4.11.1
Probab=24.24 E-value=29 Score=17.54 Aligned_cols=12 Identities=33% Similarity=0.949 Sum_probs=8.0
Q ss_pred CCcccccccccc
Q psy4350 16 KSSCGGCGQPII 27 (107)
Q Consensus 16 ~~~C~~C~~~i~ 27 (107)
+.+|..|+++|.
T Consensus 3 PVRCFTCGkvi~ 14 (55)
T 1ef4_A 3 PVRCLSCGKPVS 14 (55)
T ss_dssp SSSCSCTTSCCH
T ss_pred CeecCCCCCChh
Confidence 456777777764
No 171
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=24.08 E-value=69 Score=17.31 Aligned_cols=30 Identities=13% Similarity=0.281 Sum_probs=21.5
Q ss_pred cccccccCCCCCCCCceec-cCCeeccHHHHhh
Q psy4350 43 CLQCAHCHVPLHSELSCFS-RHGNIYCKQDFFR 74 (107)
Q Consensus 43 Cf~C~~C~~~l~~~~~~~~-~~~~~~C~~~y~~ 74 (107)
-|.|..|...+.+ .+.. ..|..||+.|-.+
T Consensus 7 ~~~CPI~~~~~~d--PV~~~~cGh~f~r~cI~~ 37 (94)
T 2yu4_A 7 GFTCPITKEEMKK--PVKNKVCGHTYEEDAIVR 37 (94)
T ss_dssp CCBCTTTCSBCSS--EEEESSSCCEEEHHHHHH
T ss_pred EeECcCcCchhcC--CEEcCCCCCeecHHHHHH
Confidence 3678888877765 4555 4888999888655
No 172
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=23.71 E-value=72 Score=15.78 Aligned_cols=12 Identities=25% Similarity=0.396 Sum_probs=6.1
Q ss_pred CccccccccccC
Q psy4350 17 SSCGGCGQPIID 28 (107)
Q Consensus 17 ~~C~~C~~~i~~ 28 (107)
..|.-|...+.+
T Consensus 16 ~~C~IC~~~~~~ 27 (70)
T 2ecn_A 16 EECCICMDGRAD 27 (70)
T ss_dssp CCCSSSCCSCCS
T ss_pred CCCeeCCcCccC
Confidence 345555555444
No 173
>3f1f_4 50S ribosomal protein L31; RF2, ribosome, termination, tRNA; 3.00A {Thermus thermophilus} PDB: 3d5d_4 3d5b_4 3f1h_4
Probab=23.64 E-value=19 Score=20.47 Aligned_cols=9 Identities=33% Similarity=0.737 Sum_probs=1.5
Q ss_pred ccCCCCcCC
Q psy4350 99 AASEPLLTG 107 (107)
Q Consensus 99 ~~~~p~~~~ 107 (107)
.+.||+.||
T Consensus 63 S~~HPFYTG 71 (97)
T 3f1f_4 63 SKCHPFYTG 71 (97)
T ss_dssp TTC------
T ss_pred CCCCCCCcC
Confidence 346777776
No 174
>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A
Probab=23.16 E-value=36 Score=12.75 Aligned_cols=11 Identities=18% Similarity=0.628 Sum_probs=6.3
Q ss_pred ccccccCCCCC
Q psy4350 44 LQCAHCHVPLH 54 (107)
Q Consensus 44 f~C~~C~~~l~ 54 (107)
|.|..|++...
T Consensus 3 ~~C~~C~~~f~ 13 (29)
T 1ard_A 3 FVCEVCTRAFA 13 (29)
T ss_dssp CBCTTTCCBCS
T ss_pred eECCCCCcccC
Confidence 45666665543
No 175
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=22.27 E-value=78 Score=15.83 Aligned_cols=53 Identities=17% Similarity=0.294 Sum_probs=28.9
Q ss_pred CCCccccccccc--cCceEE--eecCcccccccccccccCCCCCCCCceeccCCeeccHHHHhh
Q psy4350 15 EKSSCGGCGQPI--IDRFYL--LAVDRQWHLGCLQCAHCHVPLHSELSCFSRHGNIYCKQDFFR 74 (107)
Q Consensus 15 ~~~~C~~C~~~i--~~~~~~--~~~~~~~H~~Cf~C~~C~~~l~~~~~~~~~~~~~~C~~~y~~ 74 (107)
....|..|+..- .+..++ ..-+..||..|..- +|.. ......+.-||..|-.+
T Consensus 5 ~~~~C~vC~~~~~~~~~~ll~Cd~C~~~~H~~C~~p-----~l~~--~~~~p~~~W~C~~C~~~ 61 (66)
T 2yt5_A 5 SSGVCTICQEEYSEAPNEMVICDKCGQGYHQLCHTP-----HIDS--SVIDSDEKWLCRQCVFA 61 (66)
T ss_dssp CCCCBSSSCCCCCBTTBCEEECSSSCCEEETTTSSS-----CCCH--HHHHSSCCCCCHHHHHT
T ss_pred CCCCCCCCCCCCCCCCCCEEECCCCChHHHhhhCCC-----cccc--cccCCCCCEECCCCcCc
Confidence 345688898753 223333 33457799887532 2211 00113456788888654
No 176
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=22.15 E-value=44 Score=18.52 Aligned_cols=32 Identities=22% Similarity=0.411 Sum_probs=19.1
Q ss_pred CCCccccccccccCce-EEeecCcccccccccc
Q psy4350 15 EKSSCGGCGQPIIDRF-YLLAVDRQWHLGCLQC 46 (107)
Q Consensus 15 ~~~~C~~C~~~i~~~~-~~~~~~~~~H~~Cf~C 46 (107)
.-..|..|..--...- -...-++.||..|++=
T Consensus 14 ~D~~C~VC~~~t~~~l~pCRvC~RvfH~~CL~r 46 (89)
T 1wil_A 14 NDEMCDVCEVWTAESLFPCRVCTRVFHDGCLRR 46 (89)
T ss_dssp CSCCCTTTCCCCSSCCSSCSSSSSCCCHHHHHH
T ss_pred CCcccCccccccccceeccccccccccHhhccc
Confidence 3456888764322211 1356788899999854
No 177
>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1
Probab=21.75 E-value=34 Score=18.01 Aligned_cols=16 Identities=31% Similarity=0.849 Sum_probs=11.3
Q ss_pred eeccCCeeccHHHHhh
Q psy4350 59 CFSRHGNIYCKQDFFR 74 (107)
Q Consensus 59 ~~~~~~~~~C~~~y~~ 74 (107)
...=++.+||..||..
T Consensus 22 C~gCdgDLYC~rC~rE 37 (67)
T 2d8v_A 22 CAGCDGDLYCARCFRE 37 (67)
T ss_dssp ETTTTSEEECSSHHHH
T ss_pred ecCCCCceehHHHHHH
Confidence 3444668899888865
No 178
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=21.41 E-value=67 Score=18.19 Aligned_cols=8 Identities=13% Similarity=0.426 Sum_probs=4.7
Q ss_pred eeccHHHH
Q psy4350 65 NIYCKQDF 72 (107)
Q Consensus 65 ~~~C~~~y 72 (107)
.+.|..|-
T Consensus 77 ll~Cd~C~ 84 (112)
T 3v43_A 77 MLFCDSCD 84 (112)
T ss_dssp CEECTTTC
T ss_pred eEEcCCCC
Confidence 45676663
No 179
>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1
Probab=21.35 E-value=20 Score=16.21 Aligned_cols=11 Identities=27% Similarity=0.782 Sum_probs=5.9
Q ss_pred CCccccccccc
Q psy4350 16 KSSCGGCGQPI 26 (107)
Q Consensus 16 ~~~C~~C~~~i 26 (107)
+-.|..|++..
T Consensus 12 ~~~C~~C~k~f 22 (48)
T 2epr_A 12 QVACEICGKIF 22 (48)
T ss_dssp SEEETTTTEEE
T ss_pred CeeCCCCCccc
Confidence 34466665544
No 180
>3efo_B SEC24 related gene family, member D; copii, coat protein, transport signal, disease mutation, endoplasmic reticulum, ER-golgi transport, golgi apparatus, membrane; 2.70A {Homo sapiens} PDB: 3eg9_B
Probab=21.16 E-value=60 Score=25.07 Aligned_cols=34 Identities=18% Similarity=0.508 Sum_probs=23.4
Q ss_pred CCCCCccccccccccCceEEeecCcccccccccccccCC
Q psy4350 13 PEEKSSCGGCGQPIIDRFYLLAVDRQWHLGCLQCAHCHV 51 (107)
Q Consensus 13 ~~~~~~C~~C~~~i~~~~~~~~~~~~~H~~Cf~C~~C~~ 51 (107)
+.++.+|.+|+..|.+--.+...++.| +|..|..
T Consensus 95 ~~~pvRC~rCrayiNPf~~f~~~g~~w-----~Cn~C~~ 128 (770)
T 3efo_B 95 ESGPVRCNRCKAYMCPFMQFIEGGRRY-----QCGFCNC 128 (770)
T ss_dssp TTCSCBCTTTCCBSCTTCEEEGGGTEE-----ECTTTCC
T ss_pred CCCCCccCCCCCCcCCceEEecCCCEE-----Eeccccc
Confidence 456889999999997764445556666 5555554
No 181
>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1
Probab=20.63 E-value=46 Score=12.57 Aligned_cols=12 Identities=17% Similarity=0.623 Sum_probs=6.9
Q ss_pred ccccccCCCCCC
Q psy4350 44 LQCAHCHVPLHS 55 (107)
Q Consensus 44 f~C~~C~~~l~~ 55 (107)
|.|..|++....
T Consensus 3 ~~C~~C~k~f~~ 14 (30)
T 1paa_A 3 YACGLCNRAFTR 14 (30)
T ss_dssp SBCTTTCCBCSS
T ss_pred cCCcccCcccCC
Confidence 456666665543
No 182
>1loi_A Cyclic 3',5'-AMP specific phosphodiesterase RD1; hydrolase, C-AMP phosphodiesterase; NMR {Rattus norvegicus} SCOP: j.51.1.1
Probab=20.43 E-value=20 Score=14.68 Aligned_cols=10 Identities=30% Similarity=0.903 Sum_probs=6.5
Q ss_pred ccccccCCCC
Q psy4350 44 LQCAHCHVPL 53 (107)
Q Consensus 44 f~C~~C~~~l 53 (107)
|-|..|++++
T Consensus 6 ffcetcskpw 15 (26)
T 1loi_A 6 FFCETCSKPW 15 (26)
T ss_dssp HHHHTSSCTT
T ss_pred HHHHhcCCch
Confidence 4566777765
Done!