RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy4350
(107 letters)
>2l4z_A DNA endonuclease RBBP8, LIM domain transcription LMO4;
protein-protein interaction, LIM-interaction DOM LMO4,
RBBP8/CTIP, LIM-only protein; HET: DNA; NMR {Homo
sapiens}
Length = 123
Score = 80.9 bits (199), Expect = 2e-21
Identities = 24/66 (36%), Positives = 32/66 (48%), Gaps = 1/66 (1%)
Query: 10 SPCPEEKSSCGGCGQPIIDRFYLLAVDRQWHLGCLQCAHCHVPL-HSELSCFSRHGNIYC 68
C GCG I DRF L A+D WH CL+C+ C L S +++ G I C
Sbjct: 55 GSGGLSWKRCAGCGGKIADRFLLYAMDSYWHSRCLKCSSCQAQLGDIGTSSYTKSGMILC 114
Query: 69 KQDFFR 74
+ D+ R
Sbjct: 115 RNDYIR 120
>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.39.1.3 g.39.1.3
Length = 80
Score = 79.8 bits (197), Expect = 2e-21
Identities = 24/70 (34%), Positives = 34/70 (48%), Gaps = 4/70 (5%)
Query: 7 DSSSPCPEEK--SSCGGCGQPIIDRFYLLAVDRQWHLGCLQCAHCHVPLHSELSCFSRHG 64
SS + + S C GC + I LLA+D+QWH+ C +C C V L S+ G
Sbjct: 4 GSSGKPIKIRGPSHCAGCKEEIKHGQSLLALDKQWHVSCFKCQTCSVILTG--EYISKDG 61
Query: 65 NIYCKQDFFR 74
YC+ D+
Sbjct: 62 VPYCESDYHA 71
>2jtn_A LIM domain-binding protein 1, LIM/homeobox protein LHX3;
intramolecular (fusion) protein-protein complex, protein
binding/transcription complex; NMR {Mus musculus}
Length = 182
Score = 79.2 bits (195), Expect = 4e-20
Identities = 34/67 (50%), Positives = 41/67 (61%), Gaps = 2/67 (2%)
Query: 8 SSSPCPEEKSSCGGCGQPIIDRFYLLAVDRQWHLGCLQCAHCHVPLHSELSCFSRHGNIY 67
S E C GC Q I+DRF L A+DR WH CL+C+ CHVPL CFSR ++Y
Sbjct: 52 MGSGGTPEIPMCAGCDQHILDRFILKALDRHWHSKCLKCSDCHVPLAE--RCFSRGESVY 109
Query: 68 CKQDFFR 74
CK DFF+
Sbjct: 110 CKDDFFK 116
Score = 41.4 bits (97), Expect = 7e-06
Identities = 14/56 (25%), Positives = 20/56 (35%), Gaps = 2/56 (3%)
Query: 19 CGGCGQPI-IDRFYLLAVDRQWHLGCLQCAHCHVPLHS-ELSCFSRHGNIYCKQDF 72
C C I + A D +HL C C C L + + + CK D+
Sbjct: 122 CAACQLGIPPTQVVRRAQDFVYHLHCFACVVCKRQLATGDEFYLMEDSRLVCKADY 177
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer
protein ISL-1; protein-protein complex, LIM domain, Zn
finger, activator, D binding; 2.05A {Mus musculus} PDB:
3mmk_A
Length = 169
Score = 78.3 bits (193), Expect = 6e-20
Identities = 33/61 (54%), Positives = 40/61 (65%), Gaps = 2/61 (3%)
Query: 14 EEKSSCGGCGQPIIDRFYLLAVDRQWHLGCLQCAHCHVPLHSELSCFSRHGNIYCKQDFF 73
E C GC Q I+DRF L A+DR WH CL+C+ CHVPL CFSR ++YCK DFF
Sbjct: 4 PEIPMCAGCDQHILDRFILKALDRHWHSKCLKCSDCHVPLAER--CFSRGESVYCKDDFF 61
Query: 74 R 74
+
Sbjct: 62 K 62
Score = 43.3 bits (102), Expect = 2e-06
Identities = 14/58 (24%), Positives = 21/58 (36%), Gaps = 2/58 (3%)
Query: 17 SSCGGCGQPI-IDRFYLLAVDRQWHLGCLQCAHCHVPLHS-ELSCFSRHGNIYCKQDF 72
+ C C I + A D +HL C C C L + + + CK D+
Sbjct: 66 TKCAACQLGIPPTQVVRRAQDFVYHLHCFACVVCKRQLATGDEFYLMEDSRLVCKADY 123
Score = 28.7 bits (64), Expect = 0.27
Identities = 9/36 (25%), Positives = 12/36 (33%), Gaps = 1/36 (2%)
Query: 17 SSCGGCGQPIIDRFYLLAVDRQWHLGCLQCAHCHVP 52
GG G ++A + H G LQ V
Sbjct: 129 GGSGGSGGSGGGT-PMVAASPERHDGGLQANPVEVQ 163
>2xjy_A Rhombotin-2; oncoprotein, T-cell leukemia, proto-oncogene,
transcription, developmental protein; 2.40A {Homo
sapiens} PDB: 2xjz_A
Length = 131
Score = 77.1 bits (190), Expect = 7e-20
Identities = 22/57 (38%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
Query: 19 CGGCGQPIIDRFYLLAVDRQWHLGCLQCAHCHVPL-HSELSCFSRHGNIYCKQDFFR 74
CGGC Q I DR++L A+D+ WH CL C C L + + G C++D+ R
Sbjct: 5 CGGCQQNIGDRYFLKAIDQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLR 61
Score = 49.4 bits (118), Expect = 4e-09
Identities = 14/65 (21%), Positives = 26/65 (40%), Gaps = 1/65 (1%)
Query: 16 KSSCGGCGQPII-DRFYLLAVDRQWHLGCLQCAHCHVPLHSELSCFSRHGNIYCKQDFFR 74
C C + I + D+ +HL C +CA C + +I C+QD +
Sbjct: 66 DGLCASCDKRIRAYEMTMRVKDKVYHLECFKCAACQKHFCVGDRYLLINSDIVCEQDIYE 125
Query: 75 YSQAR 79
+++
Sbjct: 126 WTKIN 130
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the
N-terminal LIM domain of LMO4...; fusion protein, LMO
proteins, metal binding protein; NMR {Mus musculus}
SCOP: g.39.1.3 g.39.1.3
Length = 122
Score = 76.6 bits (188), Expect = 9e-20
Identities = 24/58 (41%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Query: 18 SCGGCGQPIIDRFYLLAVDRQWHLGCLQCAHCHVPL-HSELSCFSRHGNIYCKQDFFR 74
C GCG I DRF L A+D WH CL+C+ C L S +++ G I C+ D+ R
Sbjct: 7 RCAGCGGKIADRFLLYAMDSYWHSRCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIR 64
>1j2o_A FLIN2, fusion of rhombotin-2 and LIM domain-binding protein 1;
LIM-interaction-domain (LID), metal binding protein;
NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Length = 114
Score = 71.6 bits (175), Expect = 9e-18
Identities = 22/63 (34%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
Query: 18 SCGGCGQPIIDRFYLLAVDRQWHLGCLQCAHCHVPL-HSELSCFSRHGNIYCKQDFFRYS 76
+CGGC Q I DR++L A+D+ WH CL C C L + + G C++D+ R
Sbjct: 5 TCGGCQQNIGDRYFLKAIDQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLG 64
Query: 77 QAR 79
+
Sbjct: 65 GSG 67
>1rut_X Flinc4, fusion protein of LMO4 protein and LIM domain- binding
protein 1; B-tandem zipper, protein binding; 1.30A {Mus
musculus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3
PDB: 2dfy_X 2xjz_I 2xjy_B
Length = 188
Score = 71.6 bits (175), Expect = 4e-17
Identities = 24/58 (41%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Query: 18 SCGGCGQPIIDRFYLLAVDRQWHLGCLQCAHCHVPLHSE-LSCFSRHGNIYCKQDFFR 74
C GCG I DRF L A+D WH CL+C+ C L S +++ G I C+ D+ R
Sbjct: 7 RCAGCGGKIADRFLLYAMDSYWHSRCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIR 64
Score = 44.6 bits (105), Expect = 5e-07
Identities = 15/59 (25%), Positives = 24/59 (40%), Gaps = 1/59 (1%)
Query: 15 EKSSCGGCGQPI-IDRFYLLAVDRQWHLGCLQCAHCHVPLHSELSCFSRHGNIYCKQDF 72
+C CGQ I + A +HL C C+ C L +G+++C+ D
Sbjct: 68 NSGACSACGQSIPASELVMRAQGNVYHLKCFTCSTCRNRLVPGDRFHYINGSLFCEHDR 126
>2dlo_A Thyroid receptor-interacting protein 6; LIM domain,
OPA-interacting protein 1, zyxin related protein 1
(ZRP-1), structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.39.1.3 g.39.1.3
Length = 81
Score = 68.9 bits (169), Expect = 4e-17
Identities = 23/70 (32%), Positives = 29/70 (41%), Gaps = 2/70 (2%)
Query: 6 DDSSSPCPEEKSS-CGGCGQPIIDRFYLLAVDRQWHLGCLQCAHCHVPLHSELSCFSRHG 64
S C C C QPI+DR L A+ + +H GC C CH L
Sbjct: 4 GSSGEGCYVATLEKCATCSQPILDR-ILRAMGKAYHPGCFTCVVCHRGLDGIPFTVDATS 62
Query: 65 NIYCKQDFFR 74
I+C +DF R
Sbjct: 63 QIHCIEDFHR 72
>2xqn_T Testin, TESS; metal-binding protein, cytoskeleton, focal
adhesion, acrosom; 2.62A {Homo sapiens}
Length = 126
Score = 66.7 bits (163), Expect = 8e-16
Identities = 17/60 (28%), Positives = 23/60 (38%), Gaps = 1/60 (1%)
Query: 15 EKSSCGGCGQPIIDRFYLLAVDRQWHLGCLQCAHCHVPLHSELSCFSRHGNIYCKQDFFR 74
EK C GC + I Y A ++ WHL C C L E + CK + +
Sbjct: 2 EKPRCAGCDELIFSNEYTQAENQNWHLKHFCCFDCDSILAGE-IYVMVNDKPVCKPCYVK 60
Score = 43.9 bits (104), Expect = 5e-07
Identities = 12/59 (20%), Positives = 21/59 (35%), Gaps = 4/59 (6%)
Query: 19 CGGCGQPI-IDRFYLLAVDRQWHLG--CLQCAHCHVPLHSELSCFSRHGNIYCKQDFFR 74
C GC I + + + WH C C+ C L + G ++C + +
Sbjct: 66 CQGCHNAIDPEVQRVTYNNFSWHASTECFLCSCCSKCLIGQ-KFMPVEGMVFCSVECKK 123
>2cup_A Skeletal muscle LIM-protein 1; four and half LIM domains protein
1, LIM domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.39.1.3 g.39.1.3 g.39.1.3
Length = 101
Score = 65.5 bits (160), Expect = 1e-15
Identities = 17/57 (29%), Positives = 26/57 (45%), Gaps = 2/57 (3%)
Query: 19 CGGCGQPII-DRFYLLAVDRQWHLGCLQCAHCHVPLHSELSCFSRHGNIYCKQDFFR 74
C C +PI D + +R WH C +CA C PL + + ++ I C + R
Sbjct: 8 CVECRKPIGADSKEVHYKNRFWHDTCFRCAKCLHPL-ANETFVAKDNKILCNKCTTR 63
Score = 33.9 bits (78), Expect = 0.002
Identities = 7/32 (21%), Positives = 10/32 (31%), Gaps = 1/32 (3%)
Query: 19 CGGCGQPII-DRFYLLAVDRQWHLGCLQCAHC 49
C GC + I+ + WH C
Sbjct: 69 CKGCFKAIVAGDQNVEYKGTVWHKDCFSGPSS 100
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1,
LIM domain protein CLP-36, contractIle protein,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.39.1.3 g.39.1.3
Length = 79
Score = 63.2 bits (154), Expect = 5e-15
Identities = 16/67 (23%), Positives = 24/67 (35%), Gaps = 2/67 (2%)
Query: 8 SSSPCPEEKSSCGGCGQPIIDRFYLLAVDRQWHLGCLQCAHCHVPLHSELSCFSRHGNIY 67
S ++ C CG I+ ++ DR H C C C L + F IY
Sbjct: 7 GSIGNAQKLPMCDKCGTGIVGV-FVKLRDRHRHPECYVCTDCGTNL-KQKGHFFVEDQIY 64
Query: 68 CKQDFFR 74
C++
Sbjct: 65 CEKHARE 71
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM
domain 3, structural genomics, NPPSFA; NMR {Mus
musculus} SCOP: g.39.1.3 g.39.1.3
Length = 89
Score = 58.3 bits (141), Expect = 8e-13
Identities = 16/70 (22%), Positives = 27/70 (38%), Gaps = 2/70 (2%)
Query: 5 RDDSSSPCPEEKSSCGGCGQPIIDRFYLLAVDRQWHLGCLQCAHCHVPLHSELSCFSRHG 64
+ + + C CG I+ + A D+ H C CA C++ L + F G
Sbjct: 14 KVHGGAGSAQRMPLCDKCGSGIVGA-VVKARDKYRHPECFVCADCNLNL-KQKGYFFVEG 71
Query: 65 NIYCKQDFFR 74
+YC+
Sbjct: 72 ELYCETHARA 81
>1nyp_A Pinch protein; LIM domain, protein recognition, cell adhesion;
NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 PDB: 1u5s_B
Length = 66
Score = 56.1 bits (136), Expect = 3e-12
Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 2/54 (3%)
Query: 19 CGGCGQPIIDRFYLLAVDRQWHLGCLQCAHCHVPLHSELSCFSRHGNIYCKQDF 72
CG C +PI R + A+ +QWH+ CA C P + R G YC+ +
Sbjct: 8 CGACRRPIEGR-VVNAMGKQWHVEHFVCAKCEKPFLGH-RHYERKGLAYCETHY 59
>1a7i_A QCRP2 (LIM1); LIM domain containing proteins, metal-binding
protein, zinc finger; NMR {Coturnix japonica} SCOP:
g.39.1.3 g.39.1.3 PDB: 2o10_A
Length = 81
Score = 55.1 bits (133), Expect = 1e-11
Identities = 14/56 (25%), Positives = 22/56 (39%), Gaps = 1/56 (1%)
Query: 19 CGGCGQPIIDRFYLLAVDRQWHLGCLQCAHCHVPLHSELSCFSRHGNIYCKQDFFR 74
CG CG+ + + R +H C C C L S + +YCK + +
Sbjct: 10 CGACGRTVYHAEEVQCDGRSFHRCCFLCMVCRKNLDST-TVAIHDAEVYCKSCYGK 64
>1x3h_A Leupaxin; paxillin family, protein-protein interaction, LIM
domain, structural genomics, NPPSFA; NMR {Homo sapiens}
SCOP: g.39.1.3 g.39.1.3
Length = 80
Score = 54.7 bits (132), Expect = 1e-11
Identities = 19/56 (33%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
Query: 19 CGGCGQPIIDRFYLLAVDRQWHLGCLQCAHCHVPLHSELSCFSRHGNIYCKQDFFR 74
CGGC +P+++ YL A+D WH C C C S S F G +C+ +
Sbjct: 18 CGGCNRPVLEN-YLSAMDTVWHPECFVCGDCFTSF-STGSFFELDGRPFCELHYHH 71
>2l3k_A Rhombotin-2, linker, LIM domain-binding protein 1;
LMO2(LIM2)-LDB1(LID), chimera, fusion protein,
oncoprotein; NMR {Mus musculus} PDB: 2l6y_B 2l6z_C
Length = 123
Score = 55.5 bits (133), Expect = 2e-11
Identities = 14/72 (19%), Positives = 26/72 (36%), Gaps = 1/72 (1%)
Query: 16 KSSCGGCGQPII-DRFYLLAVDRQWHLGCLQCAHCHVPLHSELSCFSRHGNIYCKQDFFR 74
C C + I + D+ +HL C +CA C + +I C+QD +
Sbjct: 8 DGLCASCDKRIRAYEMTMRVKDKVYHLECFKCAACQKHFSVGDRYLLINSDIVCEQDIYE 67
Query: 75 YSQARYPDLPIP 86
+++
Sbjct: 68 WTKINGGSGGSG 79
>1b8t_A Protein (CRP1); LIM domain, muscle differentiation, contractIle;
NMR {Gallus gallus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3
g.39.1.3 PDB: 1ibi_A 1qli_A 1cxx_A 1ctl_A 2o13_A
Length = 192
Score = 56.2 bits (135), Expect = 3e-11
Identities = 17/54 (31%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
Query: 19 CGGCGQPIIDRFYLLAVDRQWHLGCLQCAHCHVPLHSELSCFSRHGNIYCKQDF 72
C CGQ + ++ + WH C +CA C L S + + G IYCK +
Sbjct: 118 CPRCGQAVYAAEKVIGAGKSWHKSCFRCAKCGKSLEST-TLADKDGEIYCKGCY 170
Score = 48.1 bits (114), Expect = 4e-08
Identities = 13/61 (21%), Positives = 21/61 (34%), Gaps = 1/61 (1%)
Query: 19 CGGCGQPIIDRFYLLAVDRQWHLGCLQCAHCHVPLHSELSCFSRHGNIYCKQDFFRYSQA 78
CG C + + + +H C C C L S + IYCK + +
Sbjct: 10 CGVCQKAVYFAEEVQCEGSSFHKSCFLCMVCKKNLDST-TVAVHGDEIYCKSCYGKKYGP 68
Query: 79 R 79
+
Sbjct: 69 K 69
>2ehe_A Four and A half LIM domains 3; FHL-3, skeletal muscle LIM-
protein 2, SLIM 2, FHL3, SLIM2, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 82
Score = 53.7 bits (129), Expect = 4e-11
Identities = 16/57 (28%), Positives = 21/57 (36%), Gaps = 2/57 (3%)
Query: 19 CGGCGQPI-IDRFYLLAVDRQWHLGCLQCAHCHVPLHSELSCFSRHGNIYCKQDFFR 74
C C Q I D L DR +H GC +C C L E + + C +
Sbjct: 18 CAECQQLIGHDSRELFYEDRHFHEGCFRCCRCQRSLADE-PFTCQDSELLCNDCYCS 73
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: g.39.1.3 g.39.1.3
Length = 90
Score = 53.6 bits (129), Expect = 4e-11
Identities = 15/56 (26%), Positives = 26/56 (46%), Gaps = 2/56 (3%)
Query: 19 CGGCGQPIIDRFYLLAVDRQWHLGCLQCAHCHVPLHSELSCFSRHGNIYCKQDFFR 74
C C Q I +L+A+ + WH CAHC + + + G +YC+ + +
Sbjct: 28 CAHCNQVIRGP-FLVALGKSWHPEEFNCAHCKNTM-AYIGFVEEKGALYCELCYEK 81
>2d8z_A Four and A half LIM domains 2; skeletal muscle LIM-protein 3,
LIM-domain protein DRAL, structural genomics, NPPSFA;
NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Length = 70
Score = 52.3 bits (126), Expect = 7e-11
Identities = 16/58 (27%), Positives = 21/58 (36%), Gaps = 2/58 (3%)
Query: 17 SSCGGCGQPIIDRFYLLAVDRQWHLGCLQCAHCHVPLHSELSCFSRHGNIYCKQDFFR 74
S C C +PI + ++ WH C C C L S +R YC F
Sbjct: 6 SGCVQCKKPITTGG-VTYREQPWHKECFVCTACRKQL-SGQRFTARDDFAYCLNCFCD 61
>2d8y_A Eplin protein; LIM domain, epithelial protein LOST in neoplasm,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.39.1.3 g.39.1.3
Length = 91
Score = 52.9 bits (127), Expect = 9e-11
Identities = 18/66 (27%), Positives = 30/66 (45%), Gaps = 1/66 (1%)
Query: 7 DSSSPCPEEKSSCGGCGQPIIDRFYLLAVDRQWHLGCLQCAHCHVPLHSELSCFSRHGNI 66
+ +C C + + LLA + +H+ C +C++C+ L + S HG I
Sbjct: 6 SGMKFQAPARETCVECQKTVYPMERLLANQQVFHISCFRCSYCNNKLSLG-TYASLHGRI 64
Query: 67 YCKQDF 72
YCK F
Sbjct: 65 YCKPHF 70
>1x61_A Thyroid receptor interacting protein 6; LIM domain,
OPA-interacting protein 1, zyxin related protein 1
(ZRP-1), structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.39.1.3 g.39.1.3
Length = 72
Score = 52.1 bits (125), Expect = 1e-10
Identities = 17/60 (28%), Positives = 31/60 (51%), Gaps = 2/60 (3%)
Query: 16 KSSCGGCGQPIIDR-FYLLAVDRQWHLGCLQCAHCHVPLHSELSCFSRHGNIYCKQDFFR 74
S CGGCG+ ++ ++A+DR +H+GC C+ C L + ++ YC+ +
Sbjct: 5 SSGCGGCGEDVVGDGAGVVALDRVFHVGCFVCSTCRAQLRGQ-HFYAVERRAYCEGCYVA 63
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken
structural genomics/proteomics initiative, RSGI,
NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Length = 72
Score = 51.6 bits (124), Expect = 2e-10
Identities = 17/60 (28%), Positives = 23/60 (38%), Gaps = 2/60 (3%)
Query: 16 KSSCGGCGQPII-DRFYLLAVDRQWHLGCLQCAHCHVPLHSELSCFSRHGNIYCKQDFFR 74
S C CG+ ++ L + WH C C+ C PL S S G YC +
Sbjct: 5 SSGCSACGETVMPGSRKLEYGGQTWHEHCFLCSGCEQPLGSR-SFVPDKGAHYCVPCYEN 63
>2cur_A Skeletal muscle LIM-protein 1; four and A half LIM domains
protein 1, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.39.1.3 g.39.1.3
Length = 69
Score = 50.8 bits (122), Expect = 3e-10
Identities = 12/54 (22%), Positives = 18/54 (33%), Gaps = 2/54 (3%)
Query: 19 CGGCGQPIIDRFYLLAVDRQWHLGCLQCAHCHVPLHSELSCFSRHGNIYCKQDF 72
C C + I + D+ WH C C C L + + YC +
Sbjct: 8 CVKCNKAITSG-GITYQDQPWHADCFVCVTCSKKL-AGQRFTAVEDQYYCVDCY 59
>1x4k_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3
g.39.1.3
Length = 72
Score = 50.9 bits (122), Expect = 4e-10
Identities = 11/57 (19%), Positives = 21/57 (36%), Gaps = 2/57 (3%)
Query: 19 CGGCGQPII-DRFYLLAVDRQWHLGCLQCAHCHVPLHSELSCFSRHGNIYCKQDFFR 74
C C + I+ + WH C C C P+ ++ S + +C + +
Sbjct: 8 CQECKKTIMPGTRKMEYKGSSWHETCFICHRCQQPIGTK-SFIPKDNQNFCVPCYEK 63
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3
g.39.1.3
Length = 70
Score = 50.5 bits (121), Expect = 5e-10
Identities = 17/59 (28%), Positives = 26/59 (44%), Gaps = 2/59 (3%)
Query: 16 KSSCGGCGQPIIDRFYLLAVDRQWHLGCLQCAHCHVPLHSELSCFSRHGNIYCKQDFFR 74
S C CG+ II R + A++ WH C +C C L +++ G C+ R
Sbjct: 5 SSGCHQCGEFIIGR-VIKAMNNSWHPECFRCDLCQEVL-ADIGFVKNAGRHLCRPCHNR 61
>2cuq_A Four and A half LIM domains 3; structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Length = 80
Score = 50.0 bits (120), Expect = 7e-10
Identities = 16/56 (28%), Positives = 22/56 (39%), Gaps = 2/56 (3%)
Query: 19 CGGCGQPIIDRFYLLAVDRQWHLGCLQCAHCHVPLHSELSCFSRHGNIYCKQDFFR 74
C C + + + D+ WH CL C C PL + SR + YC F
Sbjct: 18 CARCSKTLTQG-GVTYRDQPWHRECLVCTGCQTPLAGQ-QFTSRDEDPYCVACFGE 71
>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3
g.39.1.3
Length = 72
Score = 49.8 bits (119), Expect = 1e-09
Identities = 16/57 (28%), Positives = 21/57 (36%), Gaps = 4/57 (7%)
Query: 19 CGGCGQPIIDRF---YLLAVDRQWHLGCLQCAHCHVPLHSELSCFSRHGNIYCKQDF 72
C GC PI Y+ +RQWH C C C + L + +I C
Sbjct: 8 CAGCTNPISGLGGTKYISFEERQWHNDCFNCKKCSLSLVGR-GFLTERDDILCPDCG 63
>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein,
LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3
g.39.1.3
Length = 76
Score = 49.7 bits (119), Expect = 1e-09
Identities = 13/55 (23%), Positives = 21/55 (38%), Gaps = 1/55 (1%)
Query: 19 CGGCGQPIIDRFYLLAVDRQWHLGCLQCAHCHVPLHSELSCFSRHGNIYCKQDFF 73
C C + + + ++ + WH CL+C C L S G YC +
Sbjct: 3 CPKCDKEVYFAERVTSLGKDWHRPCLKCEKCGKTLTSG-GHAEHEGKPYCNHPCY 56
>1g47_A Pinch protein; LIM domain, Zn finger, cell adhesion; NMR {Homo
sapiens} SCOP: g.39.1.3 g.39.1.3
Length = 77
Score = 49.3 bits (118), Expect = 1e-09
Identities = 12/58 (20%), Positives = 19/58 (32%), Gaps = 2/58 (3%)
Query: 16 KSSCGGCGQPII-DRFYLLAVDRQWHLGCLQCAHCHVPLHSELSCFSRHGNIYCKQDF 72
++C C + + +H C CA C + G YC+ DF
Sbjct: 11 SATCERCKGGFAPAEKIVNSNGELYHEQCFVCAQCFQQFPEG-LFYEFEGRKYCEHDF 67
>3f6q_B LIM and senescent cell antigen-like-containing domain protein 1;
ILK, integrin-linked kinase, pinch, ankyrin repeat,
ANK, IPP; 1.60A {Homo sapiens} PDB: 2kbx_B 3ixe_B
Length = 72
Score = 48.9 bits (117), Expect = 2e-09
Identities = 12/58 (20%), Positives = 19/58 (32%), Gaps = 2/58 (3%)
Query: 16 KSSCGGCGQPII-DRFYLLAVDRQWHLGCLQCAHCHVPLHSELSCFSRHGNIYCKQDF 72
++C C + + +H C CA C + G YC+ DF
Sbjct: 11 SATCERCKGGFAPAEKIVNSNGELYHEQCFVCAQCFQQFPEG-LFYEFEGRKYCEHDF 67
>1x68_A FHL5 protein; four-and-A-half LIM protein 5, zinc finger domain,
AN actin- interacting protein, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Length = 76
Score = 48.7 bits (116), Expect = 2e-09
Identities = 15/55 (27%), Positives = 25/55 (45%), Gaps = 4/55 (7%)
Query: 19 CGGCGQPIIDRF---YLLAVDRQWHLGCLQCAHCHVPLHSELSCFSRHGNIYCKQ 70
C C +PI ++ D QWH C C C V L + +++ I+C++
Sbjct: 8 CVACSKPISGLTGAKFICFQDSQWHSECFNCGKCSVSLVGK-GFLTQNKEIFCQK 61
>1x63_A Skeletal muscle LIM-protein 1; LIM domain, four and A half LIM
domains protein 1, structural genomics, NPPSFA; NMR
{Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Length = 82
Score = 48.5 bits (116), Expect = 3e-09
Identities = 13/58 (22%), Positives = 22/58 (37%), Gaps = 2/58 (3%)
Query: 16 KSSCGGCGQPII-DRFYLLAVDRQWHLGCLQCAHCHVPLHSELSCFSRHGNIYCKQDF 72
C GC + I+ + WH C C++C + + S F + + YC
Sbjct: 15 SPKCKGCFKAIVAGDQNVEYKGTVWHKDCFTCSNCKQVIGTG-SFFPKGEDFYCVTCH 71
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains;
zinc finger protein, structural genomics, NPPSFA; NMR
{Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Length = 82
Score = 48.4 bits (115), Expect = 4e-09
Identities = 13/66 (19%), Positives = 18/66 (27%), Gaps = 1/66 (1%)
Query: 8 SSSPCPEEKSSCGGCGQPIIDRFYLLAVDRQWHLGCLQCAHCHVPLHS-ELSCFSRHGNI 66
C CG+ + L +H C +C C L G+
Sbjct: 7 GQHQEAGAGDLCALCGEHLYVLERLCVNGHFFHRSCFRCHTCEATLWPGGYEQHPGDGHF 66
Query: 67 YCKQDF 72
YC Q
Sbjct: 67 YCLQHL 72
>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.39.1.3 g.39.1.3
Length = 76
Score = 47.8 bits (114), Expect = 5e-09
Identities = 11/55 (20%), Positives = 21/55 (38%), Gaps = 1/55 (1%)
Query: 19 CGGCGQPIIDRFYLLAVDRQWHLGCLQCAHCHVPLHSELSCFSRHGNIYCKQDFF 73
C C + + + ++ + WH CL+C C L G +C + +
Sbjct: 12 CPKCDKTVYFAEKVSSLGKDWHKFCLKCERCSKTLTPG-GHAEHDGKPFCHKPCY 65
>1v6g_A Actin binding LIM protein 2; LIM domain, zinc binding domain,
ablim2, structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Homo
sapiens} SCOP: g.39.1.3 g.39.1.3
Length = 81
Score = 46.3 bits (110), Expect = 3e-08
Identities = 12/52 (23%), Positives = 19/52 (36%), Gaps = 1/52 (1%)
Query: 19 CGGCGQPIIDRFYLLAVDRQWHLGCLQCAHCHVPLHSELSCFSRHGNIYCKQ 70
C C Q I + A+ + +H C CA C +P C++
Sbjct: 18 CFSCDQFIEGE-VVSALGKTYHPDCFVCAVCRLPFPPGDRVTFNGKECMCQK 68
>1x6a_A LIMK-2, LIM domain kinase 2; LIM-kinase 2, zinc finger domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.39.1.3 g.39.1.3
Length = 81
Score = 45.5 bits (108), Expect = 4e-08
Identities = 12/62 (19%), Positives = 24/62 (38%), Gaps = 2/62 (3%)
Query: 19 CGGCGQPIIDRFYLLAVDRQWHLGCLQCAHCHVPLHS-ELSCFSRHGNIYCKQDFFRYSQ 77
C GC + +++A + ++H C C C V + + +H +YC +
Sbjct: 18 CHGCSLLMTGP-FMVAGEFKYHPECFACMSCKVIIEDGDAYALVQHATLYCGKCHNEVVS 76
Query: 78 AR 79
Sbjct: 77 GP 78
>2egq_A FHL1 protein; LIM domain, four and A half LIM domains protein 1,
skeletal muscle LIM- protein 1, SLIM 1, structural
genomics NPPSFA; NMR {Homo sapiens}
Length = 77
Score = 44.8 bits (106), Expect = 8e-08
Identities = 14/58 (24%), Positives = 19/58 (32%), Gaps = 5/58 (8%)
Query: 19 CGGCGQPII----DRFYLLAVDRQWHLGCLQCAHCHVPLHSELSCFSRHGNIYCKQDF 72
C GC PI + + WH C C C V L ++ +YC
Sbjct: 18 CAGCKNPITGFGKGSSVVAYEGQSWHDYCFHCKKCSVNLANK-RFVFHQEQVYCPDCA 74
>2cor_A Pinch protein; LIM domain, particularly interesting NEW Cys- His
protein, LIM and senescent cell antigen-like domains 1,
structural genomics; NMR {Homo sapiens} SCOP: g.39.1.3
g.39.1.3
Length = 79
Score = 44.8 bits (106), Expect = 9e-08
Identities = 13/57 (22%), Positives = 22/57 (38%), Gaps = 3/57 (5%)
Query: 16 KSSCGGCGQPIIDRFYLLAVDRQWHLGCLQCAHCHVPLHSELSCFSRHGNIYCKQDF 72
K C C I ++ L+ + +H CA+C L ++ G +YC
Sbjct: 15 KYICQKCHAIIDEQ-PLIFKNDPYHPDHFNCANCGKELTAD--ARELKGELYCLPCH 68
>1wig_A KIAA1808 protein; LIM domain, zinc finger, metal-binding protein,
structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Homo
sapiens} SCOP: g.39.1.3 g.39.1.3
Length = 73
Score = 37.4 bits (86), Expect = 7e-05
Identities = 12/54 (22%), Positives = 20/54 (37%), Gaps = 1/54 (1%)
Query: 17 SSCGGCGQPIIDRFYLLAVDRQWHLGCLQCAHCHVPLHSELSCFSRHGNIYCKQ 70
S C C + I R L A ++ +H C C C + + +I+
Sbjct: 6 SGCDSCEKYITGRV-LEAGEKHYHPSCALCVRCGQMFAEGEEMYLQGSSIWHPA 58
>2iyb_E Testin, TESS, TES; LIM domain, SH3-binding, tumour supressor LIM
domain EVH1 DO cell motility, phosphorylation,
cytoskeleton; 2.35A {Homo sapiens}
Length = 65
Score = 35.6 bits (82), Expect = 2e-04
Identities = 12/54 (22%), Positives = 19/54 (35%), Gaps = 4/54 (7%)
Query: 19 CGGCGQPI-IDRFYLLAVDRQWHL--GCLQCAHCHVPLHSELSCFSRHGNIYCK 69
C GC I + + + WH C C+ C L + G ++C
Sbjct: 5 CQGCHNAIDPEVQRVTYNNFSWHASTECFLCSCCSKCLIGQ-KFMPVEGMVFCS 57
>4ask_A Lysine-specific demethylase 6B; oxidoreductase, KDM6B, GSK-J1,
inhibitor, lysine specific HI demethylase; HET: K0I;
1.86A {Homo sapiens} PDB: 2xue_A*
Length = 510
Score = 27.5 bits (60), Expect = 0.94
Identities = 6/54 (11%), Positives = 17/54 (31%), Gaps = 3/54 (5%)
Query: 13 PEEKSSCGGCGQPIIDRFYLLAVD---RQWHLGCLQCAHCHVPLHSELSCFSRH 63
E C C + + ++ + + + + C CA + ++
Sbjct: 430 DEPAYYCNECDVEVFNILFVTSENGSRNTYLVHCEGCARRRSAGLQGVVVLEQY 483
>3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase;
transferase; 3.10A {Arabidospis thaliana}
Length = 979
Score = 26.9 bits (60), Expect = 1.2
Identities = 7/32 (21%), Positives = 13/32 (40%), Gaps = 4/32 (12%)
Query: 67 YCKQDFFRYSQARYPDLPIPK--TLVSFLYDK 96
D S + PD+ IP +L +++
Sbjct: 41 NNNSDVIFRS--KLPDIYIPNHLSLHDYIFQN 70
>3avr_A Lysine-specific demethylase 6A; cupin superfamily,
TRI/dimethyllysine demethylase, oxidoredu structural
protein complex; HET: M3L OGA EDO; 1.80A {Homo sapiens}
PDB: 3avs_A*
Length = 531
Score = 26.4 bits (57), Expect = 2.2
Identities = 7/53 (13%), Positives = 15/53 (28%), Gaps = 3/53 (5%)
Query: 14 EEKSSCGGCGQPIIDRFYLLAV---DRQWHLGCLQCAHCHVPLHSELSCFSRH 63
E C C + D ++ + + + C CA ++
Sbjct: 456 EPAHYCSICEVEVFDLLFVTNESNSRKTYIVHCQDCARKTSGNLENFVVLEQY 508
>2h6e_A ADH-4, D-arabinose 1-dehydrogenase; rossman fold, medium chain
alcohol dehydrogenase, oxidoreduc; 1.80A {Sulfolobus
solfataricus}
Length = 344
Score = 25.7 bits (57), Expect = 3.5
Identities = 4/11 (36%), Positives = 5/11 (45%)
Query: 39 WHLGCLQCAHC 49
G L C +C
Sbjct: 90 ATWGDLTCRYC 100
>3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET:
AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A*
Length = 536
Score = 25.6 bits (57), Expect = 4.0
Identities = 9/30 (30%), Positives = 17/30 (56%), Gaps = 4/30 (13%)
Query: 69 KQDFFRYSQARYPDLPIPK--TLVSFLYDK 96
+++F S + PD+ IPK L S++ +
Sbjct: 4 QEEFIFRS--KLPDIYIPKNLPLHSYVLEN 31
>1vk6_A NADH pyrophosphatase; 1790429, structural genomics, JCSG, PS
protein structure initiative, joint center for
structural G hydrolase; HET: MSE; 2.20A {Escherichia
coli} SCOP: d.113.1.4 d.113.1.4 g.41.14.1 PDB: 2gb5_A
Length = 269
Score = 25.5 bits (56), Expect = 4.1
Identities = 8/34 (23%), Positives = 12/34 (35%), Gaps = 6/34 (17%)
Query: 19 CGGCGQPIIDRFYLLAVDRQWHLGCLQCAHCHVP 52
CG CG + +W + C C + P
Sbjct: 110 CGYCGHE------MYPSKTEWAMLCSHCRERYYP 137
>1h2b_A Alcohol dehydrogenase; oxidoreductase, archaea, hyperthermophIle,
zinc; HET: OCA NAJ; 1.62A {Aeropyrum pernix} SCOP:
b.35.1.2 c.2.1.1
Length = 359
Score = 25.3 bits (56), Expect = 5.1
Identities = 2/11 (18%), Positives = 3/11 (27%)
Query: 39 WHLGCLQCAHC 49
+ C C
Sbjct: 105 PAVTDGTCLAC 115
>1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S
rRNA, NESG, structural genomics, PSI, protein structure
initiative; HET: SAM; 2.80A {Escherichia coli} SCOP:
c.66.1.33
Length = 269
Score = 24.9 bits (54), Expect = 5.9
Identities = 9/23 (39%), Positives = 9/23 (39%), Gaps = 3/23 (13%)
Query: 44 LQCAHCHVPLHSE---LSCFSRH 63
C CH PL E C RH
Sbjct: 3 FSCPLCHQPLSREKNSYICPQRH 25
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition,
kinase-INH complex, rubredoxin fold, TPR domain,
transferase; HET: AXX; 2.40A {Mycobacterium
tuberculosis}
Length = 681
Score = 25.2 bits (55), Expect = 6.3
Identities = 7/14 (50%), Positives = 9/14 (64%)
Query: 13 PEEKSSCGGCGQPI 26
PE K C CG+P+
Sbjct: 31 PESKRFCWNCGRPV 44
>1jvb_A NAD(H)-dependent alcohol dehydrogenase; archaeon, zinc,
oxidoreductase; HET: MSE; 1.85A {Sulfolobus
solfataricus} SCOP: b.35.1.2 c.2.1.1 PDB: 1r37_A* 1nto_A
1nvg_A 3i4c_A 2eer_A*
Length = 347
Score = 24.5 bits (54), Expect = 7.8
Identities = 3/11 (27%), Positives = 4/11 (36%)
Query: 39 WHLGCLQCAHC 49
G C +C
Sbjct: 94 PWQGEGNCYYC 104
>2yy5_A Tryptophanyl-tRNA synthetase; aminoaccyl tRNA synthetase,
structural genomics, NPPSFA; HET: WSA; 2.55A {Mycoplasma
pneumoniae}
Length = 348
Score = 24.5 bits (54), Expect = 9.6
Identities = 4/19 (21%), Positives = 6/19 (31%), Gaps = 4/19 (21%)
Query: 50 HVPLHSEL----SCFSRHG 64
+ HS + S G
Sbjct: 85 DLLEHSMMGYLMMVQSNLG 103
>3mhs_A Ubiquitin carboxyl-terminal hydrolase 8; multi-protein complex,
hydrolase-transcription regulator-Pro binding complex,
acetylation, cytoplasm; 1.89A {Saccharomyces cerevisiae}
PDB: 3mhh_A 3m99_A
Length = 476
Score = 24.5 bits (53), Expect = 9.9
Identities = 17/100 (17%), Positives = 29/100 (29%), Gaps = 25/100 (25%)
Query: 7 DSSSPCPEEKSSCGGCGQPIIDRFYLLAVDRQWHLGCLQCAHC------HVPLHSE---- 56
CG C + ++ CLQC C H HS+
Sbjct: 39 SVPKEKFLNTMKCGTCHEINSGATFM----------CLQCGFCGCWNHSHFLSHSKQIGH 88
Query: 57 -LSCFSRHGNIYCKQDFFRYSQARYPDLPIPKTLVSFLYD 95
S +G ++C F+ I +++ +D
Sbjct: 89 IFGINSNNGLLFC----FKCEDYIGNIDLINDAILAKYWD 124
>1i6k_A TRPRS, tryptophanyl-tRNA synthetase; class I tRNA synthetase, AARS,
induced FIT, ligase; HET: TYM; 1.72A {Geobacillus
stearothermophilus} SCOP: c.26.1.1 PDB: 1i6l_A* 1i6m_A*
1m83_A* 1mau_A* 1maw_A* 1mb2_A* 2ov4_A* 3fhj_A* 3fi0_A*
1d2r_A 3u1v_A
Length = 328
Score = 24.4 bits (54), Expect = 9.9
Identities = 5/19 (26%), Positives = 7/19 (36%), Gaps = 4/19 (21%)
Query: 50 HVPLHSEL----SCFSRHG 64
VP H++ C G
Sbjct: 82 EVPAHAQAAWMLQCIVYIG 100
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.324 0.140 0.473
Gapped
Lambda K H
0.267 0.0478 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,650,924
Number of extensions: 83852
Number of successful extensions: 508
Number of sequences better than 10.0: 1
Number of HSP's gapped: 430
Number of HSP's successfully gapped: 114
Length of query: 107
Length of database: 6,701,793
Length adjustment: 72
Effective length of query: 35
Effective length of database: 4,691,481
Effective search space: 164201835
Effective search space used: 164201835
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 51 (24.0 bits)