RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy4350
(107 letters)
>d1rutx1 g.39.1.3 (X:19-48) LIM only 4 (Lmo4) {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 30
Score = 47.8 bits (114), Expect = 8e-10
Identities = 15/26 (57%), Positives = 16/26 (61%)
Query: 19 CGGCGQPIIDRFYLLAVDRQWHLGCL 44
C GCG I DRF L A+D WH CL
Sbjct: 5 CAGCGGKIADRFLLYAMDSYWHSRCL 30
>d1j2oa1 g.39.1.3 (A:1-30) Rhombotin-2 (Lmo2) {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 30
Score = 47.5 bits (113), Expect = 1e-09
Identities = 14/26 (53%), Positives = 19/26 (73%)
Query: 18 SCGGCGQPIIDRFYLLAVDRQWHLGC 43
+CGGC Q I DR++L A+D+ WH C
Sbjct: 5 TCGGCQQNIGDRYFLKAIDQYWHEDC 30
>d2dj7a2 g.39.1.3 (A:8-43) Actin-binding LIM protein 3, abLIM-3
{Human (Homo sapiens) [TaxId: 9606]}
Length = 36
Score = 39.1 bits (91), Expect = 2e-06
Identities = 13/28 (46%), Positives = 17/28 (60%)
Query: 17 SSCGGCGQPIIDRFYLLAVDRQWHLGCL 44
S C GC + I LLA+D+QWH+ C
Sbjct: 9 SHCAGCKEEIKHGQSLLALDKQWHVSCF 36
>d2dara2 g.39.1.3 (A:8-52) PDZ and LIM domain protein 5, Enigma
{Human (Homo sapiens) [TaxId: 9606]}
Length = 45
Score = 31.3 bits (71), Expect = 0.002
Identities = 9/22 (40%), Positives = 12/22 (54%), Gaps = 1/22 (4%)
Query: 19 CGGCGQPIIDRFYLLAVDRQWH 40
C C Q I F L+A+ + WH
Sbjct: 21 CAHCNQVIRGPF-LVALGKSWH 41
>d1x3ha1 g.39.1.3 (A:8-42) Leupaxin {Human (Homo sapiens) [TaxId:
9606]}
Length = 35
Score = 30.8 bits (70), Expect = 0.003
Identities = 12/25 (48%), Positives = 17/25 (68%), Gaps = 1/25 (4%)
Query: 19 CGGCGQPIIDRFYLLAVDRQWHLGC 43
CGGC +P+++ YL A+D WH C
Sbjct: 11 CGGCNRPVLEN-YLSAMDTVWHPEC 34
>d1x61a1 g.39.1.3 (A:8-34) Thyroid receptor interacting protein 6,
TRIP6 {Human (Homo sapiens) [TaxId: 9606]}
Length = 27
Score = 29.5 bits (66), Expect = 0.010
Identities = 12/27 (44%), Positives = 20/27 (74%), Gaps = 1/27 (3%)
Query: 19 CGGCGQPII-DRFYLLAVDRQWHLGCL 44
CGGCG+ ++ D ++A+DR +H+GC
Sbjct: 1 CGGCGEDVVGDGAGVVALDRVFHVGCF 27
>d1u5sb1 g.39.1.3 (B:72-102) Pinch (particularly interesting new
Cys-His) protein {Human (Homo sapiens) [TaxId: 9606]}
Length = 31
Score = 28.2 bits (63), Expect = 0.027
Identities = 10/22 (45%), Positives = 14/22 (63%), Gaps = 1/22 (4%)
Query: 19 CGGCGQPIIDRFYLLAVDRQWH 40
CG C +PI R + A+ +QWH
Sbjct: 8 CGACRRPIEGRV-VNAMGKQWH 28
>d1g47a2 g.39.1.3 (A:36-70) Pinch (particularly interesting new
Cys-His) protein {Human (Homo sapiens) [TaxId: 9606]}
Length = 35
Score = 25.1 bits (55), Expect = 0.40
Identities = 8/30 (26%), Positives = 10/30 (33%), Gaps = 1/30 (3%)
Query: 46 CAHCHVPLHSELSCFSRHGNIYCKQDFFRY 75
CA C + G YC+ DF
Sbjct: 3 CAQCFQQFPEG-LFYEFEGRKYCEHDFQML 31
>d1rutx2 g.39.1.3 (X:49-82) LIM only 4 (Lmo4) {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 34
Score = 24.0 bits (52), Expect = 1.1
Identities = 6/17 (35%), Positives = 11/17 (64%)
Query: 58 SCFSRHGNIYCKQDFFR 74
S +++ G I C+ D+ R
Sbjct: 15 SSYTKSGMILCRNDYIR 31
>d1b8ta4 g.39.1.3 (A:144-192) Cysteine-rich (intestinal) protein,
CRP, CRIP {Chicken (Gallus gallus) [TaxId: 9031]}
Length = 49
Score = 23.9 bits (52), Expect = 1.3
Identities = 10/27 (37%), Positives = 13/27 (48%), Gaps = 1/27 (3%)
Query: 46 CAHCHVPLHSELSCFSRHGNIYCKQDF 72
CA C L S + + G IYCK +
Sbjct: 2 CAKCGKSLES-TTLADKDGEIYCKGCY 27
>d2d8xa2 g.39.1.3 (A:8-32) Pinch (particularly interesting new
Cys-His) protein {Human (Homo sapiens) [TaxId: 9606]}
Length = 26
Score = 23.7 bits (51), Expect = 1.4
Identities = 10/26 (38%), Positives = 14/26 (53%), Gaps = 1/26 (3%)
Query: 19 CGGCGQPIIDRFYLLAVDRQWHLGCL 44
C CG+ II R + A++ WH C
Sbjct: 1 CHQCGEFIIGRV-IKAMNNSWHPECF 25
>d2cu8a1 g.39.1.3 (A:8-37) Cysteine-rich (intestinal) protein,
CRP, CRIP {Human (Homo sapiens) [TaxId: 9606]}
Length = 30
Score = 23.6 bits (51), Expect = 1.6
Identities = 7/28 (25%), Positives = 13/28 (46%)
Query: 17 SSCGGCGQPIIDRFYLLAVDRQWHLGCL 44
S C C + + + ++ + WH CL
Sbjct: 3 SKCPKCDKTVYFAEKVSSLGKDWHKFCL 30
>d2dloa1 g.39.1.3 (A:8-42) Thyroid receptor interacting protein 6,
TRIP6 {Human (Homo sapiens) [TaxId: 9606]}
Length = 35
Score = 22.8 bits (49), Expect = 3.6
Identities = 12/25 (48%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
Query: 19 CGGCGQPIIDRFYLLAVDRQWHLGC 43
C C QPI+DR L A+ + +H GC
Sbjct: 11 CATCSQPILDRI-LRAMGKAYHPGC 34
>d1x4la1 g.39.1.3 (A:8-36) Four and a half LIM domains protein 2,
FHL2 {Human (Homo sapiens) [TaxId: 9606]}
Length = 29
Score = 22.5 bits (48), Expect = 4.2
Identities = 11/28 (39%), Positives = 13/28 (46%), Gaps = 3/28 (10%)
Query: 19 CGGCGQPII---DRFYLLAVDRQWHLGC 43
C GC PI Y+ +RQWH C
Sbjct: 1 CAGCTNPISGLGGTKYISFEERQWHNDC 28
>d2dara1 g.39.1.3 (A:53-84) PDZ and LIM domain protein 5, Enigma
{Human (Homo sapiens) [TaxId: 9606]}
Length = 32
Score = 22.4 bits (48), Expect = 4.3
Identities = 7/30 (23%), Positives = 15/30 (50%), Gaps = 1/30 (3%)
Query: 46 CAHCHVPLHSELSCFSRHGNIYCKQDFFRY 75
CAHC + + + G +YC+ + ++
Sbjct: 2 CAHCKNTM-AYIGFVEEKGALYCELCYEKF 30
>d1ea0a2 c.1.4.1 (A:423-1193) Alpha subunit of glutamate synthase,
central and FMN domains {Azospirillum brasilense [TaxId:
192]}
Length = 771
Score = 24.1 bits (52), Expect = 5.2
Identities = 4/10 (40%), Positives = 6/10 (60%)
Query: 41 LGCLQCAHCH 50
+GC+ CH
Sbjct: 678 MGCIMVRQCH 687
>d1ofda2 c.1.4.1 (A:431-1239) Alpha subunit of glutamate synthase,
central and FMN domains {Synechocystis sp. [TaxId:
1143]}
Length = 809
Score = 24.1 bits (52), Expect = 5.3
Identities = 4/10 (40%), Positives = 5/10 (50%)
Query: 41 LGCLQCAHCH 50
GC+ CH
Sbjct: 705 EGCIMARVCH 714
>d2d8ya2 g.39.1.3 (A:44-85) Eplin, LIMA1 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 42
Score = 22.3 bits (48), Expect = 6.0
Identities = 12/28 (42%), Positives = 16/28 (57%), Gaps = 3/28 (10%)
Query: 46 CAHCHVPLHSELSCF-SRHGNIYCKQDF 72
C++C+ L L + S HG IYCK F
Sbjct: 2 CSYCNNKL--SLGTYASLHGRIYCKPHF 27
>d1x63a1 g.39.1.3 (A:8-44) Four and a half LIM domains protein 1,
FHL-1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 37
Score = 22.0 bits (47), Expect = 6.8
Identities = 7/28 (25%), Positives = 9/28 (32%), Gaps = 1/28 (3%)
Query: 17 SSCGGCGQPI-IDRFYLLAVDRQWHLGC 43
C GC + I + WH C
Sbjct: 9 PKCKGCFKAIVAGDQNVEYKGTVWHKDC 36
>d2dloa2 g.39.1.3 (A:43-75) Thyroid receptor interacting protein
6, TRIP6 {Human (Homo sapiens) [TaxId: 9606]}
Length = 33
Score = 21.6 bits (46), Expect = 7.1
Identities = 9/29 (31%), Positives = 11/29 (37%)
Query: 46 CAHCHVPLHSELSCFSRHGNIYCKQDFFR 74
C CH L I+C +DF R
Sbjct: 2 CVVCHRGLDGIPFTVDATSQIHCIEDFHR 30
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.324 0.140 0.473
Gapped
Lambda K H
0.267 0.0383 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 432,064
Number of extensions: 18981
Number of successful extensions: 127
Number of sequences better than 10.0: 1
Number of HSP's gapped: 125
Number of HSP's successfully gapped: 37
Length of query: 107
Length of database: 2,407,596
Length adjustment: 67
Effective length of query: 40
Effective length of database: 1,487,686
Effective search space: 59507440
Effective search space used: 59507440
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 47 (22.8 bits)