BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy4351
(62 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1L8K|A Chain A, T Cell Protein-Tyrosine Phosphatase Structure
Length = 314
Score = 60.5 bits (145), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 25/36 (69%), Positives = 33/36 (91%)
Query: 10 NNVSVQEILLEMRHYRMGLIQTPDQLRFSYQAIIEG 45
++++++++LL MR YRMGLIQTPDQLRFSY AIIEG
Sbjct: 240 DDINIKQVLLNMRKYRMGLIQTPDQLRFSYMAIIEG 275
>pdb|3CWE|A Chain A, Ptp1b In Complex With A Phosphonic Acid Inhibitor
Length = 290
Score = 56.2 bits (134), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 24/36 (66%), Positives = 32/36 (88%)
Query: 10 NNVSVQEILLEMRHYRMGLIQTPDQLRFSYQAIIEG 45
++V ++++LLEMR +RMGLIQT DQLRFSY A+IEG
Sbjct: 249 SSVDIKKVLLEMRKFRMGLIQTADQLRFSYLAVIEG 284
>pdb|1Q6J|A Chain A, The Structure Of Phosphotyrosine Phosphatase 1b In Complex
With Compound 2
pdb|1Q6M|A Chain A, The Structure Of Phosphotyrosine Phosphatase 1b In Complex
With Compound 3
pdb|1Q6N|A Chain A, The Structure Of Phosphotyrosine Phosphatase 1b In Complex
With Compound 4
pdb|1Q6N|B Chain B, The Structure Of Phosphotyrosine Phosphatase 1b In Complex
With Compound 4
pdb|1Q6P|A Chain A, The Structure Of Phosphotyrosine Phosphatase 1b In Complex
With Compound 6
pdb|1Q6P|B Chain B, The Structure Of Phosphotyrosine Phosphatase 1b In Complex
With Compound 6
pdb|1Q6S|A Chain A, The Structure Of Phosphotyrosine Phosphatase 1b In Complex
With Compound 9
pdb|1Q6S|B Chain B, The Structure Of Phosphotyrosine Phosphatase 1b In Complex
With Compound 9
pdb|1Q6T|A Chain A, The Structure Of Phosphotyrosine Phosphatase 1b In Complex
With Compound 11
pdb|1Q6T|B Chain B, The Structure Of Phosphotyrosine Phosphatase 1b In Complex
With Compound 11
pdb|2FJN|A Chain A, The Structure Of Phosphotyrosine Phosphatase 1b In Complex
With Compound 2
pdb|2FJN|B Chain B, The Structure Of Phosphotyrosine Phosphatase 1b In Complex
With Compound 2
Length = 310
Score = 56.2 bits (134), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 24/36 (66%), Positives = 32/36 (88%)
Query: 10 NNVSVQEILLEMRHYRMGLIQTPDQLRFSYQAIIEG 45
++V ++++LLEMR +RMGLIQT DQLRFSY A+IEG
Sbjct: 254 SSVDIKKVLLEMRKFRMGLIQTADQLRFSYLAVIEG 289
>pdb|1PA1|A Chain A, Crystal Structure Of The C215d Mutant Of Protein Tyrosine
Phosphatase 1b
Length = 310
Score = 56.2 bits (134), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 24/36 (66%), Positives = 32/36 (88%)
Query: 10 NNVSVQEILLEMRHYRMGLIQTPDQLRFSYQAIIEG 45
++V ++++LLEMR +RMGLIQT DQLRFSY A+IEG
Sbjct: 254 SSVDIKKVLLEMRKFRMGLIQTADQLRFSYLAVIEG 289
>pdb|1I57|A Chain A, Crystal Structure Of Apo Human Ptp1b (C215s) Mutant
Length = 310
Score = 56.2 bits (134), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 24/36 (66%), Positives = 32/36 (88%)
Query: 10 NNVSVQEILLEMRHYRMGLIQTPDQLRFSYQAIIEG 45
++V ++++LLEMR +RMGLIQT DQLRFSY A+IEG
Sbjct: 254 SSVDIKKVLLEMRKFRMGLIQTADQLRFSYLAVIEG 289
>pdb|1NWL|A Chain A, Crystal Structure Of The Ptp1b Complexed With
Sp7343-Sp7964, A Ptyr Mimetic
pdb|1NWE|A Chain A, Ptp1b R47c Modified At C47 With N-[4-(2-{2-[3-(2-Bromo-
Acetylamino)-Propionylamino]-3-Hydroxy-Propionylamino}-
Ethyl)-Phenyl]-Oxalamic Acid
Length = 298
Score = 56.2 bits (134), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 24/36 (66%), Positives = 32/36 (88%)
Query: 10 NNVSVQEILLEMRHYRMGLIQTPDQLRFSYQAIIEG 45
++V ++++LLEMR +RMGLIQT DQLRFSY A+IEG
Sbjct: 242 SSVDIKKVLLEMRKFRMGLIQTADQLRFSYLAVIEG 277
>pdb|2FJM|A Chain A, The Structure Of Phosphotyrosine Phosphatase 1b In Complex
With Compound 2
pdb|2FJM|B Chain B, The Structure Of Phosphotyrosine Phosphatase 1b In Complex
With Compound 2
Length = 310
Score = 56.2 bits (134), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 24/36 (66%), Positives = 32/36 (88%)
Query: 10 NNVSVQEILLEMRHYRMGLIQTPDQLRFSYQAIIEG 45
++V ++++LLEMR +RMGLIQT DQLRFSY A+IEG
Sbjct: 254 SSVDIKKVLLEMRKFRMGLIQTADQLRFSYLAVIEG 289
>pdb|1G1F|A Chain A, Crystal Structure Of Protein Tyrosine Phosphatase 1b
Complexed With A Tri-Phosphorylated Peptide (Rdi(Ptr)
Etd(Ptr)(Ptr)rk) From The Insulin Receptor Kinase
pdb|1G1G|A Chain A, Crystal Structure Of Protein Tyrosine Phosphatase 1b
Complexed With A Mono-Phosphorylated Peptide (Etdy(Ptr)
Rkggkgll) From The Insulin Receptor Kinase
pdb|1G1H|A Chain A, Crystal Structure Of Protein Tyrosine Phosphatase 1b
Complexed With A Bis-Phosphorylated Peptide
(Etd(Ptr)(Ptr) Rkggkgll) From The Insulin Receptor
Kinase
pdb|2B4S|A Chain A, Crystal Structure Of A Complex Between Ptp1b And The
Insulin Receptor Tyrosine Kinase
pdb|2B4S|C Chain C, Crystal Structure Of A Complex Between Ptp1b And The
Insulin Receptor Tyrosine Kinase
Length = 298
Score = 56.2 bits (134), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 24/36 (66%), Positives = 32/36 (88%)
Query: 10 NNVSVQEILLEMRHYRMGLIQTPDQLRFSYQAIIEG 45
++V ++++LLEMR +RMGLIQT DQLRFSY A+IEG
Sbjct: 242 SSVDIKKVLLEMRKFRMGLIQTADQLRFSYLAVIEG 277
>pdb|1LQF|A Chain A, Structure Of Ptp1b In Complex With A Peptidic
Bisphosphonate Inhibitor
pdb|1LQF|B Chain B, Structure Of Ptp1b In Complex With A Peptidic
Bisphosphonate Inhibitor
pdb|1LQF|C Chain C, Structure Of Ptp1b In Complex With A Peptidic
Bisphosphonate Inhibitor
pdb|1LQF|D Chain D, Structure Of Ptp1b In Complex With A Peptidic
Bisphosphonate Inhibitor
Length = 295
Score = 56.2 bits (134), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 24/36 (66%), Positives = 32/36 (88%)
Query: 10 NNVSVQEILLEMRHYRMGLIQTPDQLRFSYQAIIEG 45
++V ++++LLEMR +RMGLIQT DQLRFSY A+IEG
Sbjct: 254 SSVDIKKVLLEMRKFRMGLIQTADQLRFSYLAVIEG 289
>pdb|2F6F|A Chain A, The Structure Of The S295f Mutant Of Human Ptp1b
Length = 302
Score = 56.2 bits (134), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 24/36 (66%), Positives = 32/36 (88%)
Query: 10 NNVSVQEILLEMRHYRMGLIQTPDQLRFSYQAIIEG 45
++V ++++LLEMR +RMGLIQT DQLRFSY A+IEG
Sbjct: 246 SSVDIKKVLLEMRKFRMGLIQTADQLRFSYLAVIEG 281
>pdb|2AZR|A Chain A, Crystal Structure Of Ptp1b With Bicyclic Thiophene
Inhibitor
pdb|2B07|A Chain A, Crystal Structure Of Ptp1b With Tricyclic Thiophene
Inhibitor.
pdb|2H4G|A Chain A, Crystal Structure Of Ptp1b With Monocyclic Thiophene
Inhibitor
pdb|2H4K|A Chain A, Crystal Structure Of Ptp1b With A Monocyclic Thiophene
Inhibitor
pdb|2HB1|A Chain A, Crystal Structure Of Ptp1b With Monocyclic Thiophene
Inhibitor
pdb|2QBP|A Chain A, Crystal Structure Of Ptp1b-inhibitor Complex
pdb|2QBQ|A Chain A, Crystal Structure Of Ptp1b-Inhibitor Complex
pdb|2QBR|A Chain A, Crystal Structure Of Ptp1b-Inhibitor Complex
pdb|2QBS|A Chain A, Crystal Structure Of Ptp1b-Inhibitor Complex
pdb|2ZMM|A Chain A, Crystal Structure Of Ptp1b-Inhibitor Complex
pdb|2ZN7|A Chain A, Crystal Structures Of Ptp1b-Inhibitor Complexes
Length = 299
Score = 56.2 bits (134), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 24/36 (66%), Positives = 32/36 (88%)
Query: 10 NNVSVQEILLEMRHYRMGLIQTPDQLRFSYQAIIEG 45
++V ++++LLEMR +RMGLIQT DQLRFSY A+IEG
Sbjct: 242 SSVDIKKVLLEMRKFRMGLIQTADQLRFSYLAVIEG 277
>pdb|1PTU|A Chain A, Crystal Structure Of Protein Tyrosine Phosphatase 1b
Complexed With Phosphotyrosine-Containing Hexa-Peptide
(Dadepyl-Nh2)
pdb|1PTT|A Chain A, Crystal Structure Of Protein Tyrosine Phosphatase 1b
Complexed With Phosphotyrosine-Containing Tetra-Peptide
(Ac-Depyl-Nh2)
Length = 321
Score = 56.2 bits (134), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 24/36 (66%), Positives = 32/36 (88%)
Query: 10 NNVSVQEILLEMRHYRMGLIQTPDQLRFSYQAIIEG 45
++V ++++LLEMR +RMGLIQT DQLRFSY A+IEG
Sbjct: 242 SSVDIKKVLLEMRKFRMGLIQTADQLRFSYLAVIEG 277
>pdb|1EEN|A Chain A, Crystal Structure Of Protein Tyrosine Phosphatase 1b
Complexed With Acetyl-D-A-D-Bpa-Ptyr-L-I-P-Q-Q-G
pdb|1EEO|A Chain A, Crystal Structure Of Protein Tyrosine Phosphatase 1b
Complexed With Acetyl-E-L-E-F-Ptyr-M-D-Y-E-Nh2
pdb|1PTY|A Chain A, Crystal Structure Of Protein Tyrosine Phosphatase 1b
Complexed With Two Phosphotyrosine Molecules
Length = 321
Score = 56.2 bits (134), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 24/36 (66%), Positives = 32/36 (88%)
Query: 10 NNVSVQEILLEMRHYRMGLIQTPDQLRFSYQAIIEG 45
++V ++++LLEMR +RMGLIQT DQLRFSY A+IEG
Sbjct: 242 SSVDIKKVLLEMRKFRMGLIQTADQLRFSYLAVIEG 277
>pdb|1AAX|A Chain A, Crystal Structure Of Protein Tyrosine Phosphatase 1b
Complexed With Two Bis(Para-Phosphophenyl)methane (Bppm)
Molecules
Length = 321
Score = 56.2 bits (134), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 24/36 (66%), Positives = 32/36 (88%)
Query: 10 NNVSVQEILLEMRHYRMGLIQTPDQLRFSYQAIIEG 45
++V ++++LLEMR +RMGLIQT DQLRFSY A+IEG
Sbjct: 242 SSVDIKKVLLEMRKFRMGLIQTADQLRFSYLAVIEG 277
>pdb|3QKP|A Chain A, Protein Tyrosine Phosphatase 1b - Apo W179f Mutant With
Open Wpd-Loop
pdb|3QKQ|A Chain A, Protein Tyrosine Phosphatase 1b - W179f Mutant Bound With
Vanadate
Length = 321
Score = 56.2 bits (134), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 24/36 (66%), Positives = 32/36 (88%)
Query: 10 NNVSVQEILLEMRHYRMGLIQTPDQLRFSYQAIIEG 45
++V ++++LLEMR +RMGLIQT DQLRFSY A+IEG
Sbjct: 242 SSVDIKKVLLEMRKFRMGLIQTADQLRFSYLAVIEG 277
>pdb|1BZJ|A Chain A, Human Ptp1b Complexed With Tpicooh
Length = 297
Score = 56.2 bits (134), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 24/36 (66%), Positives = 32/36 (88%)
Query: 10 NNVSVQEILLEMRHYRMGLIQTPDQLRFSYQAIIEG 45
++V ++++LLEMR +RMGLIQT DQLRFSY A+IEG
Sbjct: 241 SSVDIKKVLLEMRKFRMGLIQTADQLRFSYLAVIEG 276
>pdb|1G7G|A Chain A, Human Ptp1b Catalytic Domain Complexes With Pnu179326
pdb|1JF7|A Chain A, Human Ptp1b Catalytic Domain Complexed With Pnu177836
pdb|1JF7|B Chain B, Human Ptp1b Catalytic Domain Complexed With Pnu177836
pdb|1KAK|A Chain A, Human Tyrosine Phosphatase 1b Complexed With An Inhibitor
pdb|1KAV|A Chain A, Human Tyrosine Phosphatase 1b Complexed With An Inhibitor
pdb|1T48|A Chain A, Allosteric Inhibition Of Protein Tyrosine Phosphatase 1b
pdb|1T49|A Chain A, Allosteric Inhibition Of Protein Tyrosine Phosphatase 1b
pdb|1T4J|A Chain A, Allosteric Inhibition Of Protein Tyrosine Phosphatase 1b
pdb|2F6T|A Chain A, Protein Tyrosine Phosphatase 1b With Sulfamic Acid
Inhibitors
pdb|2F6V|A Chain A, Protein Tyrosine Phosphatase 1b With Sulfamic Acid
Inhibitors
pdb|2F6W|A Chain A, Protein Tyrosine Phosphatase 1b With Sulfamic Acid
Inhibitors
pdb|2F6Y|A Chain A, Protein Tyrosine Phosphatase 1b With Sulfamic Acid
Inhibitors
pdb|2F6Z|A Chain A, Protein Tyrosine Phosphatase 1b With Sulfamic Acid
Inhibitors
pdb|2F70|A Chain A, Protein Tyrosine Phosphatase 1b With Sulfamic Acid
Inhibitors
pdb|2F71|A Chain A, Protein Tyrosine Phosphatase 1b With Sulfamic Acid
Inhibitors
Length = 298
Score = 56.2 bits (134), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 24/36 (66%), Positives = 32/36 (88%)
Query: 10 NNVSVQEILLEMRHYRMGLIQTPDQLRFSYQAIIEG 45
++V ++++LLEMR +RMGLIQT DQLRFSY A+IEG
Sbjct: 242 SSVDIKKVLLEMRKFRMGLIQTADQLRFSYLAVIEG 277
>pdb|2CM2|A Chain A, Structure Of Protein Tyrosine Phosphatase 1b (P212121)
pdb|2CM3|A Chain A, Structure Of Protein Tyrosine Phosphatase 1b (C2)
pdb|2CM3|B Chain B, Structure Of Protein Tyrosine Phosphatase 1b (C2)
pdb|2CMB|A Chain A, Structural Basis For Inhibition Of Protein Tyrosine
Phosphatase 1b By Isothiazolidinone Heterocyclic
Phosphonate Mimetics
pdb|2CMC|A Chain A, Structural Basis For Inhibition Of Protein Tyrosine
Phosphatase 1b By Isothiazolidinone Heterocyclic
Phosphonate Mimetics
pdb|2CNE|A Chain A, Structural Insights Into The Design Of Nonpeptidic
Isothiazolidinone-Containing Inhibitors Of Protein
Tyrosine Phosphatase 1b
Length = 304
Score = 56.2 bits (134), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 24/36 (66%), Positives = 32/36 (88%)
Query: 10 NNVSVQEILLEMRHYRMGLIQTPDQLRFSYQAIIEG 45
++V ++++LLEMR +RMGLIQT DQLRFSY A+IEG
Sbjct: 248 SSVDIKKVLLEMRKFRMGLIQTADQLRFSYLAVIEG 283
>pdb|3A5K|A Chain A, Crystal Structure Of Protein-Tyrosine Phosphatase 1b
Length = 304
Score = 56.2 bits (134), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 24/36 (66%), Positives = 32/36 (88%)
Query: 10 NNVSVQEILLEMRHYRMGLIQTPDQLRFSYQAIIEG 45
++V ++++LLEMR +RMGLIQT DQLRFSY A+IEG
Sbjct: 248 SSVDIKKVLLEMRKFRMGLIQTADQLRFSYLAVIEG 283
>pdb|3ZV2|A Chain A, Human Protein-Tyrosine Phosphatase 1b C215a, S216a Mutant
Length = 320
Score = 56.2 bits (134), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 24/36 (66%), Positives = 32/36 (88%)
Query: 10 NNVSVQEILLEMRHYRMGLIQTPDQLRFSYQAIIEG 45
++V ++++LLEMR +RMGLIQT DQLRFSY A+IEG
Sbjct: 242 SSVDIKKVLLEMRKFRMGLIQTADQLRFSYLAVIEG 277
>pdb|1OEO|X Chain X, Ptp1b With The Catalytic Cysteine Oxidized To Sulfonic
Acid
pdb|1OET|A Chain A, Oxidation State Of Protein Tyrosine Phosphatase 1b
pdb|1OEU|A Chain A, Oxidation State Of Protein Tyrosine Phosphatase 1b
pdb|1OEV|A Chain A, Oxidation State Of Protein Tyrosine Phosphatase 1b
Length = 321
Score = 56.2 bits (134), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 24/36 (66%), Positives = 32/36 (88%)
Query: 10 NNVSVQEILLEMRHYRMGLIQTPDQLRFSYQAIIEG 45
++V ++++LLEMR +RMGLIQT DQLRFSY A+IEG
Sbjct: 242 SSVDIKKVLLEMRKFRMGLIQTADQLRFSYLAVIEG 277
>pdb|3EU0|A Chain A, Crystal Structure Of The S-Nitrosylated Cys215 Of Ptp1b
Length = 327
Score = 56.2 bits (134), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 24/36 (66%), Positives = 32/36 (88%)
Query: 10 NNVSVQEILLEMRHYRMGLIQTPDQLRFSYQAIIEG 45
++V ++++LLEMR +RMGLIQT DQLRFSY A+IEG
Sbjct: 248 SSVDIKKVLLEMRKFRMGLIQTADQLRFSYLAVIEG 283
>pdb|3SME|A Chain A, Structure Of Ptp1b Inactivated By H2o2BICARBONATE
Length = 300
Score = 56.2 bits (134), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 24/36 (66%), Positives = 32/36 (88%)
Query: 10 NNVSVQEILLEMRHYRMGLIQTPDQLRFSYQAIIEG 45
++V ++++LLEMR +RMGLIQT DQLRFSY A+IEG
Sbjct: 244 SSVDIKKVLLEMRKFRMGLIQTADQLRFSYLAVIEG 279
>pdb|2CMA|A Chain A, Structural Basis For Inhibition Of Protein Tyrosine
Phosphatase 1b By Isothiazolidinone Heterocyclic
Phosphonate Mimetics
pdb|3A5J|A Chain A, Crystal Structure Of Protein-Tyrosine Phosphatase 1b
Length = 327
Score = 56.2 bits (134), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 24/36 (66%), Positives = 32/36 (88%)
Query: 10 NNVSVQEILLEMRHYRMGLIQTPDQLRFSYQAIIEG 45
++V ++++LLEMR +RMGLIQT DQLRFSY A+IEG
Sbjct: 248 SSVDIKKVLLEMRKFRMGLIQTADQLRFSYLAVIEG 283
>pdb|1NL9|A Chain A, Potent, Selective Protein Tyrosine Phosphatase 1b
Inhibitor Compound 12 Using A Linked-Fragment Strategy
pdb|1NNY|A Chain A, Potent, Selective Protein Tyrosine Phosphatase 1b
Inhibitor Compound 23 Using A Linked-fragment Strategy
pdb|1NO6|A Chain A, Potent, Selective Protein Tyrosine Phosphatase 1b
Inhibitor Compound 5 Using A Linked-fragment Strategy
pdb|1NZ7|A Chain A, Potent, Selective Inhibitors Of Protein Tyrosine
Phosphatase 1b Using A Second Phosphotyrosine Binding
Site, Complexed With Compound 19.
pdb|1ONY|A Chain A, Oxalyl-aryl-amino Benzoic Acid Inhibitors Of Ptp1b,
Compound 17
pdb|1ONZ|A Chain A, Oxalyl-Aryl-Amino Benzoic Acid Inhibitors Of Ptp1b,
Compound 8b
pdb|1OEM|X Chain X, Ptp1b With The Catalytic Cysteine Oxidized To A
Sulfenyl-Amide Bond
pdb|1OES|A Chain A, Oxidation State Of Protein Tyrosine Phosphatase 1b
pdb|1PXH|A Chain A, Crystal Structure Of Protein Tyrosine Phosphatase 1b With
Potent And Selective Bidentate Inhibitor Compound 2
pdb|1PH0|A Chain A, Non-Carboxylic Acid-Containing Inhibitor Of Ptp1b
Targeting The Second Phosphotyrosine Site
pdb|1PYN|A Chain A, Dual-Site Potent, Selective Protein Tyrosine Phosphatase
1b Inhibitor Using A Linked Fragment Strategy And A
Malonate Head On The First Site
pdb|1Q1M|A Chain A, A Highly Efficient Approach To A Selective And Cell Active
Ptp1b Inhibitors
pdb|1QXK|A Chain A, Monoacid-Based, Cell Permeable, Selective Inhibitors Of
Protein Tyrosine Phosphatase 1b
pdb|1SUG|A Chain A, 1.95 A Structure Of Apo Protein Tyrosine Phosphatase 1b
pdb|1XBO|A Chain A, Ptp1b Complexed With Isoxazole Carboxylic Acid
pdb|1WAX|A Chain A, Protein Tyrosine Phosphatase 1b With Active Site Inhibitor
pdb|2BGD|A Chain A, Structure-Based Design Of Protein Tyrosine Phosphatase-1b
Inhibitors
pdb|2BGE|A Chain A, Structure-Based Design Of Protein Tyrosine Phosphatase-1b
Inhibitors
pdb|2CM7|A Chain A, Structural Basis For Inhibition Of Protein Tyrosine
Phosphatase 1b By Isothiazolidinone Heterocyclic
Phosphonate Mimetics
pdb|2CM8|A Chain A, Structural Basis For Inhibition Of Protein Tyrosine
Phosphatase 1b By Isothiazolidinone Heterocyclic
Phosphonate Mimetics
pdb|2CNF|A Chain A, Structural Insights Into The Design Of Nonpeptidic
Isothiazolidinone-Containing Inhibitors Of Protein
Tyrosine Phosphatase 1b
pdb|2CNG|A Chain A, Structural Insights Into The Design Of Nonpeptidic
Isothiazolidinone-Containing Inhibitors Of Protein
Tyrosine Phosphatase 1b
pdb|2CNH|A Chain A, Structural Insights Into The Design Of Nonpeptidic
Isothiazolidinone-Containing Inhibitors Of Protein
Tyrosine Phosphatase 1b
pdb|2CNI|A Chain A, Structural Insights Into The Design Of Nonpeptidic
Isothiazolidinone-Containing Inhibitors Of Protein
Tyrosine Phosphatase 1b
pdb|2HNP|A Chain A, Crystal Structure Of Human Protein Tyrosine Phosphatase 1b
pdb|2HNQ|A Chain A, Crystal Structure Of Human Protein Tyrosine Phosphatase 1b
pdb|2VEU|A Chain A, Crystal Structure Of Protein Tyrosine Phosphatase 1b In
Complex With An Isothiazolidinone-Containing Inhibitor
pdb|2VEV|A Chain A, Crystal Strucutre Of Protein Tyrosine Phosphatase 1b In
Complex With An Isothiazolidinone-Containing Inhibitor
pdb|2VEW|A Chain A, Crystal Strucutre Of Protein Tyrosine Phosphatase 1b In
Complex With An Isothiazolidinone-Containing Inhibitor
pdb|2VEX|A Chain A, Crystal Strucutre Of Protein Tyrosine Phosphatase 1b In
Complex With An Isothiazolidinone-Containing Inhibitor
pdb|2VEY|A Chain A, Crystal Strucutre Of Protein Tyrosine Phosphatase 1b In
Complex With An Isothiazolidinone-Containing Inhibitor
pdb|3D9C|A Chain A, Crystal Structure Ptp1b Complex With Aryl Seleninic Acid
pdb|3EAX|A Chain A, Crystal Structure Ptp1b Complex With Small Molecule
Compound Lzp-6
pdb|3EB1|A Chain A, Crystal Structure Ptp1b Complex With Small Molecule
Inhibitor Lzp-25
pdb|3I7Z|A Chain A, Protein Tyrosine Phosphatase 1b - Transition State Analog
Fo First Catalytic Step
pdb|3I80|A Chain A, Protein Tyrosine Phosphatase 1b - Transition State Analog
Fo Second Catalytic Step
Length = 321
Score = 56.2 bits (134), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 24/36 (66%), Positives = 32/36 (88%)
Query: 10 NNVSVQEILLEMRHYRMGLIQTPDQLRFSYQAIIEG 45
++V ++++LLEMR +RMGLIQT DQLRFSY A+IEG
Sbjct: 242 SSVDIKKVLLEMRKFRMGLIQTADQLRFSYLAVIEG 277
>pdb|4I8N|A Chain A, Crystal Structure Of Protein Tyrosine Phosphatase 1b In
Complex With An Inhibitor
[(4-{(2s)-2-(1,3-Benzoxazol-2-Yl)-2-[(4-Fluorophenyl)
Sulfamoyl]ethyl}phenyl)amino](Oxo)acetic Acid
Length = 354
Score = 56.2 bits (134), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 24/36 (66%), Positives = 32/36 (88%)
Query: 10 NNVSVQEILLEMRHYRMGLIQTPDQLRFSYQAIIEG 45
++V ++++LLEMR +RMGLIQT DQLRFSY A+IEG
Sbjct: 276 SSVDIKKVLLEMRKFRMGLIQTADQLRFSYLAVIEG 311
>pdb|1C86|A Chain A, Crystal Structure Of Protein Tyrosine Phosphatase 1b
(R47v, D48n) Complexed With
2-(Oxalyl-Amino-4,7-Dihydro-5h-
Thieno[2,3-C]pyran-3-Carboxylic Acid
Length = 298
Score = 55.1 bits (131), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 23/36 (63%), Positives = 32/36 (88%)
Query: 10 NNVSVQEILLEMRHYRMGLIQTPDQLRFSYQAIIEG 45
++V ++++LL+MR +RMGLIQT DQLRFSY A+IEG
Sbjct: 242 SSVDIKKVLLDMRKFRMGLIQTADQLRFSYLAVIEG 277
>pdb|1ECV|A Chain A, Crystal Structure Of Protein Tyrosine Phosphatase 1b
Complexed With 5-Iodo-2-(Oxalyl-Amino)-Benzoic Acid
pdb|1C83|A Chain A, Crystal Structure Of Protein Tyrosine Phosphatase 1b
Complexed With 6-(Oxalyl-Amino)-1h-Indole-5-Carboxylic
Acid
pdb|1C84|A Chain A, Crystal Structure Of Protein Tyrosine Phosphatase 1b
Complexed With 3-(Oxalyl-Amino)-Naphthalene-2-Carboxlic
Acid
pdb|1C85|A Chain A, Crystal Structure Of Protein Tyrosine Phosphatase 1b
Complexed With 2-(Oxalyl-Amino)-Benzoic Acid
pdb|1C87|A Chain A, Crystal Structure Of Protein Tyrosine Phosphatase 1b
Complexed With
2-(Oxalyl-Amino-4,7-Dihydro-5h-Thieno[2,3-
C]pyran-3-Carboxylic Acid
pdb|1C88|A Chain A, Crystal Structure Of Protein Tyrosine Phosphatase 1b
Complexed With 2-(Oxalyl-Amino)-4,5,6,7-Tetrahydro-
Thieno[2,3-C]pyridine-3-Carboxylic Acid
Length = 298
Score = 55.1 bits (131), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 23/36 (63%), Positives = 32/36 (88%)
Query: 10 NNVSVQEILLEMRHYRMGLIQTPDQLRFSYQAIIEG 45
++V ++++LL+MR +RMGLIQT DQLRFSY A+IEG
Sbjct: 242 SSVDIKKVLLDMRKFRMGLIQTADQLRFSYLAVIEG 277
>pdb|2NT7|A Chain A, Crystal Structure Of Ptp1b-inhibitor Complex
pdb|2NTA|A Chain A, Crystal Structure Of Ptp1b-Inhibitor Complex
Length = 299
Score = 55.1 bits (131), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 23/36 (63%), Positives = 32/36 (88%)
Query: 10 NNVSVQEILLEMRHYRMGLIQTPDQLRFSYQAIIEG 45
++V ++++LL+MR +RMGLIQT DQLRFSY A+IEG
Sbjct: 242 SSVDIKKVLLDMRKFRMGLIQTADQLRFSYLAVIEG 277
>pdb|1G7F|A Chain A, Human Ptp1b Catalytic Domain Complexed With Pnu177496
Length = 298
Score = 55.1 bits (131), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 23/36 (63%), Positives = 32/36 (88%)
Query: 10 NNVSVQEILLEMRHYRMGLIQTPDQLRFSYQAIIEG 45
++V ++++LL+MR +RMGLIQT DQLRFSY A+IEG
Sbjct: 242 SSVDIKKVLLDMRKFRMGLIQTADQLRFSYLAVIEG 277
>pdb|1PTV|A Chain A, Crystal Structure Of Protein Tyrosine Phosphatase 1b
Complexed With Phosphotyrosine
Length = 321
Score = 54.7 bits (130), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 23/36 (63%), Positives = 32/36 (88%)
Query: 10 NNVSVQEILLEMRHYRMGLIQTPDQLRFSYQAIIEG 45
++V ++++LL+MR +RMGLIQT DQLRFSY A+IEG
Sbjct: 242 SSVDIKKVLLDMRKFRMGLIQTADQLRFSYLAVIEG 277
>pdb|1L8G|A Chain A, Crystal Structure Of Ptp1b Complexed With 7-(1,1-dioxo-1h-
Benzo[d]isothiazol-3-yloxymethyl)-2-(oxalyl-amino)-4,7-
Dihydro-5h-thieno[2,3-c]pyran-3-carboxylic Acid
Length = 321
Score = 54.7 bits (130), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 23/36 (63%), Positives = 32/36 (88%)
Query: 10 NNVSVQEILLEMRHYRMGLIQTPDQLRFSYQAIIEG 45
++V ++++LL+MR +RMGLIQT DQLRFSY A+IEG
Sbjct: 242 SSVDIKKVLLDMRKFRMGLIQTADQLRFSYLAVIEG 277
>pdb|1BZH|A Chain A, Cyclic Peptide Inhibitor Of Human Ptp1b
Length = 298
Score = 53.1 bits (126), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 22/36 (61%), Positives = 32/36 (88%)
Query: 10 NNVSVQEILLEMRHYRMGLIQTPDQLRFSYQAIIEG 45
++V ++++LL+MR +RMGLIQT +QLRFSY A+IEG
Sbjct: 242 SSVDIKKVLLDMRKFRMGLIQTAEQLRFSYLAVIEG 277
>pdb|1BZC|A Chain A, Human Ptp1b Catalytic Domain Complexed With Tpi
Length = 321
Score = 53.1 bits (126), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 22/36 (61%), Positives = 32/36 (88%)
Query: 10 NNVSVQEILLEMRHYRMGLIQTPDQLRFSYQAIIEG 45
++V ++++LL+MR +RMGLIQT +QLRFSY A+IEG
Sbjct: 242 SSVDIKKVLLDMRKFRMGLIQTAEQLRFSYLAVIEG 277
>pdb|1A5Y|A Chain A, Protein Tyrosine Phosphatase 1b Cysteinyl-Phosphate
Intermediate
Length = 330
Score = 50.8 bits (120), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 21/36 (58%), Positives = 31/36 (86%)
Query: 10 NNVSVQEILLEMRHYRMGLIQTPDQLRFSYQAIIEG 45
++V ++++LL+MR +RMGLI T +QLRFSY A+IEG
Sbjct: 242 SSVDIKKVLLDMRKFRMGLIATAEQLRFSYLAVIEG 277
>pdb|1GFY|A Chain A, Residue 259 Is A Key Determinant Of Substrate Specificity
Of Protein-Tyrosine Phosphatase 1b And Alpha
Length = 298
Score = 49.3 bits (116), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 21/36 (58%), Positives = 30/36 (83%)
Query: 10 NNVSVQEILLEMRHYRMGLIQTPDQLRFSYQAIIEG 45
++V ++++LL+MR +R LIQT DQLRFSY A+IEG
Sbjct: 242 SSVDIKKVLLDMRKFRCQLIQTADQLRFSYLAVIEG 277
>pdb|2PA5|A Chain A, Crystal Structure Of Human Protein Tyrosine Phosphatase
Ptpn9
pdb|2PA5|B Chain B, Crystal Structure Of Human Protein Tyrosine Phosphatase
Ptpn9
pdb|4GE2|A Chain A, Crystal Structure Of Human Protein Tyrosine Phosphatase
Ptpn9 (Meg2) Complex With Compound 3
pdb|4GE2|B Chain B, Crystal Structure Of Human Protein Tyrosine Phosphatase
Ptpn9 (Meg2) Complex With Compound 3
pdb|4GE5|A Chain A, Crystal Structure Of Human Protein Tyrosine Phosphatase
Ptpn9 (Meg2) Complex With Compound 5
pdb|4GE5|B Chain B, Crystal Structure Of Human Protein Tyrosine Phosphatase
Ptpn9 (Meg2) Complex With Compound 5
pdb|4GE6|A Chain A, Crystal Structure Of Human Protein Tyrosine Phosphatase
Ptpn9 (Meg2) Complex With Compound 7
pdb|4GE6|B Chain B, Crystal Structure Of Human Protein Tyrosine Phosphatase
Ptpn9 (Meg2) Complex With Compound 7
Length = 314
Score = 32.0 bits (71), Expect = 0.080, Method: Composition-based stats.
Identities = 15/37 (40%), Positives = 23/37 (62%)
Query: 8 EINNVSVQEILLEMRHYRMGLIQTPDQLRFSYQAIIE 44
E+ ++V + + MR R IQTP+Q F Y+AI+E
Sbjct: 262 ELGTLNVFQTVSRMRTQRAFSIQTPEQYYFCYKAILE 298
>pdb|2QCJ|A Chain A, Native Structure Of Lyp
pdb|2QCJ|B Chain B, Native Structure Of Lyp
pdb|2QCT|A Chain A, Structure Of Lyp With Inhibitor I-C11
pdb|2QCT|B Chain B, Structure Of Lyp With Inhibitor I-C11
Length = 313
Score = 31.6 bits (70), Expect = 0.13, Method: Composition-based stats.
Identities = 17/42 (40%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Query: 4 ISDGEI-NNVSVQEILLEMRHYRMGLIQTPDQLRFSYQAIIE 44
+ DG I N SV ++ EMR R L+QT +Q Y A++E
Sbjct: 266 LKDGIIPENFSVFSLIREMRTQRPSLVQTQEQYELVYNAVLE 307
>pdb|3OLR|A Chain A, Ptpn22 In Complex With Consensus Phospho-Tyrosine Peptide
1
pdb|3OLR|B Chain B, Ptpn22 In Complex With Consensus Phospho-Tyrosine Peptide
1
pdb|3OLR|C Chain C, Ptpn22 In Complex With Consensus Phospho-Tyrosine Peptide
1
pdb|3OLR|D Chain D, Ptpn22 In Complex With Consensus Phospho-Tyrosine Peptide
1
pdb|3OMH|A Chain A, Crystal Structure Of Ptpn22 In Complex With Skap-Hom
Ptyr75 Peptide
pdb|3OMH|B Chain B, Crystal Structure Of Ptpn22 In Complex With Skap-Hom
Ptyr75 Peptide
pdb|3OMH|C Chain C, Crystal Structure Of Ptpn22 In Complex With Skap-Hom
Ptyr75 Peptide
pdb|3OMH|D Chain D, Crystal Structure Of Ptpn22 In Complex With Skap-Hom
Ptyr75 Peptide
Length = 313
Score = 31.2 bits (69), Expect = 0.14, Method: Composition-based stats.
Identities = 17/42 (40%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Query: 4 ISDGEI-NNVSVQEILLEMRHYRMGLIQTPDQLRFSYQAIIE 44
+ DG I N SV ++ EMR R L+QT +Q Y A++E
Sbjct: 266 LKDGIIPENFSVFSLIREMRTQRPSLVQTQEQYELVYNAVLE 307
>pdb|2P6X|A Chain A, Crystal Structure Of Human Tyrosine Phosphatase Ptpn22
pdb|2P6X|B Chain B, Crystal Structure Of Human Tyrosine Phosphatase Ptpn22
Length = 309
Score = 31.2 bits (69), Expect = 0.16, Method: Composition-based stats.
Identities = 17/42 (40%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Query: 4 ISDGEI-NNVSVQEILLEMRHYRMGLIQTPDQLRFSYQAIIE 44
+ DG I N SV ++ EMR R L+QT +Q Y A++E
Sbjct: 247 LKDGIIPENFSVFSLIREMRTQRPSLVQTQEQYELVYNAVLE 288
>pdb|3BRH|A Chain A, Protein Tyrosine Phosphatase Ptpn-22 (Lyp) Bound To The
Mono-Phosphorylated Lck Active Site Peptide
pdb|3BRH|B Chain B, Protein Tyrosine Phosphatase Ptpn-22 (Lyp) Bound To The
Mono-Phosphorylated Lck Active Site Peptide
Length = 310
Score = 31.2 bits (69), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Query: 4 ISDGEI-NNVSVQEILLEMRHYRMGLIQTPDQLRFSYQAIIE 44
+ DG I N SV ++ EMR R L+QT +Q Y A++E
Sbjct: 247 LKDGIIPENFSVFSLIREMRTQRPSLVQTQEQYELVYNAVLE 288
>pdb|3H2X|A Chain A, Crystal Structure Of The Human Lymphoid Tyrosine
Phosphatase Catalytic Domain
Length = 302
Score = 31.2 bits (69), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Query: 4 ISDGEI-NNVSVQEILLEMRHYRMGLIQTPDQLRFSYQAIIE 44
+ DG I N SV ++ EMR R L+QT +Q Y A++E
Sbjct: 247 LKDGIIPENFSVFSLIREMRTQRPSLVQTQEQYELVYNAVLE 288
>pdb|3PS5|A Chain A, Crystal Structure Of The Full-Length Human Protein
Tyrosine Phosphatase Shp-1
Length = 595
Score = 29.3 bits (64), Expect = 0.54, Method: Composition-based stats.
Identities = 13/38 (34%), Positives = 23/38 (60%)
Query: 11 NVSVQEILLEMRHYRMGLIQTPDQLRFSYQAIIEGIHT 48
++ +Q+ + +R R G++QT Q +F Y AI + I T
Sbjct: 481 DIDIQKTIQMVRAQRSGMVQTEAQYKFIYVAIAQFIET 518
>pdb|1KJN|A Chain A, Structure Of Mt0777
pdb|1KJN|B Chain B, Structure Of Mt0777
Length = 157
Score = 29.3 bits (64), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 21/40 (52%)
Query: 19 LEMRHYRMGLIQTPDQLRFSYQAIIEGIHTDWETDDELCL 58
L+ + +R+ + P LR A EGI+TD D E C+
Sbjct: 32 LKKKGFRVTVTANPAALRLVQVADPEGIYTDEXVDLESCI 71
>pdb|2I75|A Chain A, Crystal Structure Of Human Protein Tyrosine Phosphatase N4
(Ptpn4)
Length = 320
Score = 28.9 bits (63), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 19/29 (65%)
Query: 16 EILLEMRHYRMGLIQTPDQLRFSYQAIIE 44
+I+ MR R +IQTP Q RF +AI++
Sbjct: 274 DIVRTMRDQRAMMIQTPSQYRFVCEAILK 302
>pdb|2OC3|A Chain A, Crystal Structure Of The Catalytic Domain Of Human Protein
Tyrosine Phosphatase Non-Receptor Type 18
Length = 303
Score = 28.9 bits (63), Expect = 0.81, Method: Composition-based stats.
Identities = 11/34 (32%), Positives = 21/34 (61%)
Query: 11 NVSVQEILLEMRHYRMGLIQTPDQLRFSYQAIIE 44
+ S+ +++L+MR R +QT +Q RF Y + +
Sbjct: 261 DFSLFDVVLKMRKQRPAAVQTEEQYRFLYHTVAQ 294
>pdb|2BZL|A Chain A, Crystal Structure Of The Human Protein Tyrosine
Phosphatase N14 At 1.65 A Resolution
Length = 325
Score = 28.5 bits (62), Expect = 1.0, Method: Composition-based stats.
Identities = 14/33 (42%), Positives = 20/33 (60%)
Query: 12 VSVQEILLEMRHYRMGLIQTPDQLRFSYQAIIE 44
V V +L +R RM +IQT Q +F YQ +I+
Sbjct: 285 VEVPMMLRLLREQRMFMIQTIAQYKFVYQVLIQ 317
>pdb|2GJT|A Chain A, Crystal Structure Of The Human Receptor Phosphatase Ptpro
pdb|2GJT|B Chain B, Crystal Structure Of The Human Receptor Phosphatase Ptpro
Length = 295
Score = 28.5 bits (62), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 20/31 (64%)
Query: 12 VSVQEILLEMRHYRMGLIQTPDQLRFSYQAI 42
V + ++ EMR YRM ++QT +Q F +Q +
Sbjct: 249 VDILGLVSEMRSYRMSMVQTEEQYIFIHQCV 279
>pdb|1GWZ|A Chain A, Crystal Structure Of The Catalytic Domain Of The Protein
Tyrosine Phosphatase Shp-1
Length = 299
Score = 28.5 bits (62), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 23/38 (60%)
Query: 11 NVSVQEILLEMRHYRMGLIQTPDQLRFSYQAIIEGIHT 48
++ +Q+ + +R R G++QT Q +F Y AI + I T
Sbjct: 239 DIDIQKTIQMVRAQRSGMVQTEAQYKFIYVAIAQFIET 276
>pdb|1FPR|A Chain A, Crystal Structure Of The Complex Formed Between The
Catalytic Domain Of Shp-1 And An In Vitro Peptide
Substrate Py469 Derived From Shps-1
Length = 284
Score = 28.5 bits (62), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 23/38 (60%)
Query: 11 NVSVQEILLEMRHYRMGLIQTPDQLRFSYQAIIEGIHT 48
++ +Q+ + +R R G++QT Q +F Y AI + I T
Sbjct: 239 DIDIQKTIQMVRAQRSGMVQTEAQYKFIYVAIAQFIET 276
>pdb|4GRY|A Chain A, Crystal Structure Of Shp1 Catalytic Domain With Jak1
Activation Loop Peptide
pdb|4GRZ|A Chain A, Crystal Structure Of Shp1 Catalytic Domain With Po4
Length = 288
Score = 28.5 bits (62), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 23/38 (60%)
Query: 11 NVSVQEILLEMRHYRMGLIQTPDQLRFSYQAIIEGIHT 48
++ +Q+ + +R R G++QT Q +F Y AI + I T
Sbjct: 241 DIDIQKTIQMVRAQRSGMVQTEAQYKFIYVAIAQFIET 278
>pdb|2G59|A Chain A, Crystal Structure Of The Catalytic Domain Of Protein
Tyrosine Phosphatase From Homo Sapiens
pdb|2G59|B Chain B, Crystal Structure Of The Catalytic Domain Of Protein
Tyrosine Phosphatase From Homo Sapiens
Length = 297
Score = 28.5 bits (62), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 20/31 (64%)
Query: 12 VSVQEILLEMRHYRMGLIQTPDQLRFSYQAI 42
V + ++ EMR YRM ++QT +Q F +Q +
Sbjct: 251 VDILGLVSEMRSYRMSMVQTEEQYIFIHQCV 281
>pdb|4GS0|A Chain A, Crystal Structure Of Shp1 Catalytic Domain With Jak1
Activation Loop Peptide
pdb|4GS0|B Chain B, Crystal Structure Of Shp1 Catalytic Domain With Jak1
Activation Loop Peptide
Length = 308
Score = 28.5 bits (62), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 23/38 (60%)
Query: 11 NVSVQEILLEMRHYRMGLIQTPDQLRFSYQAIIEGIHT 48
++ +Q+ + +R R G++QT Q +F Y AI + I T
Sbjct: 261 DIDIQKTIQMVRAQRSGMVQTEAQYKFIYVAIAQFIET 298
>pdb|2B3O|A Chain A, Crystal Structure Of Human Tyrosine Phosphatase Shp-1
Length = 532
Score = 28.1 bits (61), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 23/38 (60%)
Query: 11 NVSVQEILLEMRHYRMGLIQTPDQLRFSYQAIIEGIHT 48
++ +Q+ + +R R G++QT Q +F Y AI + I T
Sbjct: 481 DIDIQKTIQMVRAQRSGMVQTEAQYKFIYVAIAQFIET 518
>pdb|3O5X|A Chain A, Crystal Structure Of The Oncogenic Tyrosine Phosphatase
Shp2 Complexed With A Salicylic Acid-Based Small
Molecule Inhibitor
pdb|3MOW|A Chain A, Crystal Structure Of Shp2 In Complex With A Tautomycetin
Analog Ttn D- 1
Length = 276
Score = 27.3 bits (59), Expect = 2.0, Method: Composition-based stats.
Identities = 13/38 (34%), Positives = 21/38 (55%)
Query: 11 NVSVQEILLEMRHYRMGLIQTPDQLRFSYQAIIEGIHT 48
++ V + + +R R G++QT Q RF Y A+ I T
Sbjct: 227 DIDVPKTIQMVRSQRSGMVQTEAQYRFIYMAVQHYIET 264
>pdb|3B7O|A Chain A, Crystal Structure Of The Human Tyrosine Phosphatase Shp2
(Ptpn11) With An Accessible Active Site
Length = 316
Score = 27.3 bits (59), Expect = 2.3, Method: Composition-based stats.
Identities = 13/38 (34%), Positives = 21/38 (55%)
Query: 11 NVSVQEILLEMRHYRMGLIQTPDQLRFSYQAIIEGIHT 48
++ V + + +R R G++QT Q RF Y A+ I T
Sbjct: 274 DIDVPKTIQMVRSQRSGMVQTEAQYRFIYMAVQHYIET 311
>pdb|1WCH|A Chain A, Crystal Structure Of Ptpl1 Human Tyrosine Phosphatase
Mutated In Colorectal Cancer - Evidence For A Second
Phosphotyrosine Substrate Recognition Pocket
Length = 315
Score = 27.3 bits (59), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 19/30 (63%)
Query: 14 VQEILLEMRHYRMGLIQTPDQLRFSYQAII 43
+ +++ MR R G++QT DQ F YQ I+
Sbjct: 274 ISDLVRCMRLQRHGMVQTEDQYIFCYQVIL 303
>pdb|2PI7|A Chain A, Structure Of The Catalytic Domain Of The Chick Retinal
Neurite Inhibitor-Receptor Protein Tyrosine Phosphatase
Cryp-2CPTPRO
pdb|2PI7|B Chain B, Structure Of The Catalytic Domain Of The Chick Retinal
Neurite Inhibitor-Receptor Protein Tyrosine Phosphatase
Cryp-2CPTPRO
Length = 312
Score = 27.3 bits (59), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 14/50 (28%), Positives = 27/50 (54%), Gaps = 5/50 (10%)
Query: 12 VSVQEILLEMRHYRMGLIQTPDQLRFSYQAIIEGIHTDWETDD-ELCLAD 60
V + ++ +MR YRM ++QT +Q F +Q + W+ + C++D
Sbjct: 258 VDILGLVSDMRSYRMSMVQTEEQYIFIHQC----VQLMWQKKKQQFCISD 303
>pdb|2I1Y|A Chain A, Crystal Structure Of The Phosphatase Domain Of Human Ptp
Ia-2
pdb|2I1Y|B Chain B, Crystal Structure Of The Phosphatase Domain Of Human Ptp
Ia-2
Length = 301
Score = 26.9 bits (58), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 11/48 (22%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Query: 1 MHKISDGEINNVSVQEILLEMRHYRMGLIQTPDQLRFSYQAIIEGIHT 48
+++++ G + + + L +R R GL+++ DQ F+ A+ E ++
Sbjct: 248 LNRMAKG-VKEIDIAATLEHVRDQRPGLVRSKDQFEFALTAVAEEVNA 294
>pdb|2FH7|A Chain A, Crystal Structure Of The Phosphatase Domains Of Human Ptp
Sigma
Length = 595
Score = 25.8 bits (55), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 11/33 (33%), Positives = 20/33 (60%)
Query: 12 VSVQEILLEMRHYRMGLIQTPDQLRFSYQAIIE 44
V + + + +R R ++QT D+ +F YQA +E
Sbjct: 545 VDIFQTVKMLRTQRPAMVQTEDEYQFCYQAALE 577
>pdb|2JJD|A Chain A, Protein Tyrosine Phosphatase, Receptor Type, E Isoform
pdb|2JJD|B Chain B, Protein Tyrosine Phosphatase, Receptor Type, E Isoform
pdb|2JJD|C Chain C, Protein Tyrosine Phosphatase, Receptor Type, E Isoform
pdb|2JJD|D Chain D, Protein Tyrosine Phosphatase, Receptor Type, E Isoform
pdb|2JJD|E Chain E, Protein Tyrosine Phosphatase, Receptor Type, E Isoform
pdb|2JJD|F Chain F, Protein Tyrosine Phosphatase, Receptor Type, E Isoform
Length = 599
Score = 25.8 bits (55), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 20/34 (58%)
Query: 11 NVSVQEILLEMRHYRMGLIQTPDQLRFSYQAIIE 44
V V E + +R+ R ++QT Q F YQA++E
Sbjct: 255 KVDVFEFVSRIRNQRPQMVQTDMQYTFIYQALLE 288
>pdb|3SR9|A Chain A, Crystal Structure Of Mouse Ptpsigma
Length = 583
Score = 25.4 bits (54), Expect = 8.1, Method: Composition-based stats.
Identities = 9/24 (37%), Positives = 16/24 (66%)
Query: 21 MRHYRMGLIQTPDQLRFSYQAIIE 44
+R R ++QT D+ +F +QA +E
Sbjct: 556 LRTQRPAMVQTEDEYQFCFQAALE 579
>pdb|2OOQ|A Chain A, Crystal Structure Of The Human Receptor Phosphatase Ptprt
pdb|2OOQ|B Chain B, Crystal Structure Of The Human Receptor Phosphatase Ptprt
Length = 286
Score = 25.4 bits (54), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 20/34 (58%)
Query: 12 VSVQEILLEMRHYRMGLIQTPDQLRFSYQAIIEG 45
V + + E+R R+ L+QT +Q F + AI+E
Sbjct: 245 VDIFNCVRELRAQRVNLVQTEEQYVFVHDAILEA 278
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.137 0.406
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,900,481
Number of Sequences: 62578
Number of extensions: 54519
Number of successful extensions: 143
Number of sequences better than 100.0: 64
Number of HSP's better than 100.0 without gapping: 64
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 79
Number of HSP's gapped (non-prelim): 64
length of query: 62
length of database: 14,973,337
effective HSP length: 33
effective length of query: 29
effective length of database: 12,908,263
effective search space: 374339627
effective search space used: 374339627
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 45 (21.9 bits)