BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy4351
(62 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P35233|PTN2_RAT Tyrosine-protein phosphatase non-receptor type 2 OS=Rattus
norvegicus GN=Ptpn2 PE=1 SV=2
Length = 416
Score = 61.6 bits (148), Expect = 1e-09, Method: Composition-based stats.
Identities = 28/35 (80%), Positives = 32/35 (91%)
Query: 11 NVSVQEILLEMRHYRMGLIQTPDQLRFSYQAIIEG 45
+V+V++ILL MR YRMGLIQTPDQLRFSY AIIEG
Sbjct: 241 DVNVKQILLSMRKYRMGLIQTPDQLRFSYMAIIEG 275
>sp|Q06180|PTN2_MOUSE Tyrosine-protein phosphatase non-receptor type 2 OS=Mus musculus
GN=Ptpn2 PE=2 SV=2
Length = 406
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 27/35 (77%), Positives = 32/35 (91%)
Query: 11 NVSVQEILLEMRHYRMGLIQTPDQLRFSYQAIIEG 45
+V+V+++LL MR YRMGLIQTPDQLRFSY AIIEG
Sbjct: 241 DVNVKQLLLNMRKYRMGLIQTPDQLRFSYMAIIEG 275
>sp|P17706|PTN2_HUMAN Tyrosine-protein phosphatase non-receptor type 2 OS=Homo sapiens
GN=PTPN2 PE=1 SV=2
Length = 415
Score = 60.5 bits (145), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 25/36 (69%), Positives = 33/36 (91%)
Query: 10 NNVSVQEILLEMRHYRMGLIQTPDQLRFSYQAIIEG 45
++++++++LL MR YRMGLIQTPDQLRFSY AIIEG
Sbjct: 240 DDINIKQVLLNMRKYRMGLIQTPDQLRFSYMAIIEG 275
>sp|O13016|PTN1_CHICK Tyrosine-protein phosphatase non-receptor type 1 OS=Gallus gallus
GN=PTPN1 PE=2 SV=1
Length = 434
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 26/36 (72%), Positives = 32/36 (88%)
Query: 10 NNVSVQEILLEMRHYRMGLIQTPDQLRFSYQAIIEG 45
++V V+++LLEMR YRMGLIQT DQLRFSY A+IEG
Sbjct: 242 SSVDVKQVLLEMRKYRMGLIQTADQLRFSYLAVIEG 277
>sp|P35821|PTN1_MOUSE Tyrosine-protein phosphatase non-receptor type 1 OS=Mus musculus
GN=Ptpn1 PE=1 SV=2
Length = 432
Score = 56.6 bits (135), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 24/36 (66%), Positives = 32/36 (88%)
Query: 10 NNVSVQEILLEMRHYRMGLIQTPDQLRFSYQAIIEG 45
++V ++++LLEMR +RMGLIQT DQLRFSY A+IEG
Sbjct: 242 SSVDIKKVLLEMRRFRMGLIQTADQLRFSYLAVIEG 277
>sp|P20417|PTN1_RAT Tyrosine-protein phosphatase non-receptor type 1 OS=Rattus
norvegicus GN=Ptpn1 PE=2 SV=1
Length = 432
Score = 56.6 bits (135), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 24/36 (66%), Positives = 32/36 (88%)
Query: 10 NNVSVQEILLEMRHYRMGLIQTPDQLRFSYQAIIEG 45
++V ++++LLEMR +RMGLIQT DQLRFSY A+IEG
Sbjct: 242 SSVDIKKVLLEMRRFRMGLIQTADQLRFSYLAVIEG 277
>sp|P18031|PTN1_HUMAN Tyrosine-protein phosphatase non-receptor type 1 OS=Homo sapiens
GN=PTPN1 PE=1 SV=1
Length = 435
Score = 55.8 bits (133), Expect = 8e-08, Method: Composition-based stats.
Identities = 24/36 (66%), Positives = 32/36 (88%)
Query: 10 NNVSVQEILLEMRHYRMGLIQTPDQLRFSYQAIIEG 45
++V ++++LLEMR +RMGLIQT DQLRFSY A+IEG
Sbjct: 242 SSVDIKKVLLEMRKFRMGLIQTADQLRFSYLAVIEG 277
>sp|Q9W0G1|PTP61_DROME Tyrosine-protein phosphatase non-receptor type 61F OS=Drosophila
melanogaster GN=Ptp61F PE=1 SV=1
Length = 548
Score = 55.1 bits (131), Expect = 1e-07, Method: Composition-based stats.
Identities = 28/40 (70%), Positives = 31/40 (77%), Gaps = 3/40 (7%)
Query: 7 GEINNVSVQEILLEMRHYRMGLIQTPDQLRFSYQAIIEGI 46
GE N V ++L E+R YRMGLIQT DQL FSYQAIIEGI
Sbjct: 261 GECN---VSKVLCELRSYRMGLIQTADQLDFSYQAIIEGI 297
>sp|P34138|PTP2_DICDI Tyrosine-protein phosphatase 2 OS=Dictyostelium discoideum GN=ptpB
PE=2 SV=1
Length = 377
Score = 38.9 bits (89), Expect = 0.009, Method: Composition-based stats.
Identities = 16/38 (42%), Positives = 29/38 (76%)
Query: 11 NVSVQEILLEMRHYRMGLIQTPDQLRFSYQAIIEGIHT 48
++++ ++++EMR+ R G++QT DQ RF Y AI E ++T
Sbjct: 313 SINLPKLVVEMRNERPGMVQTRDQYRFCYLAISEAMNT 350
>sp|P54637|PTP3_DICDI Tyrosine-protein phosphatase 3 OS=Dictyostelium discoideum GN=ptpC
PE=2 SV=2
Length = 990
Score = 33.9 bits (76), Expect = 0.29, Method: Composition-based stats.
Identities = 15/39 (38%), Positives = 27/39 (69%), Gaps = 1/39 (2%)
Query: 11 NVSVQEILLEMRHYRMGLIQTPDQLRFSYQAIIEGIHTD 49
N+S+++ +LE+R R G++QT DQ F ++ +I + TD
Sbjct: 681 NISIKDSVLELRRQRRGMVQTLDQYIFIFK-VINDVLTD 718
>sp|P29352|PTN22_MOUSE Tyrosine-protein phosphatase non-receptor type 22 OS=Mus musculus
GN=Ptpn22 PE=1 SV=1
Length = 802
Score = 33.9 bits (76), Expect = 0.34, Method: Composition-based stats.
Identities = 21/56 (37%), Positives = 30/56 (53%), Gaps = 3/56 (5%)
Query: 4 ISDGEI-NNVSVQEILLEMRHYRMGLIQTPDQLRFSYQAIIEGI--HTDWETDDEL 56
+ DG I N SV ++ EMR R L+QT +Q Y A++E H D +D+ L
Sbjct: 247 LKDGIIPKNFSVFNLIQEMRTQRPSLVQTQEQYELVYSAVLELFKRHMDVISDNHL 302
>sp|A1L1L3|PTN20_RAT Tyrosine-protein phosphatase non-receptor type 20 OS=Rattus
norvegicus GN=Ptpn20 PE=2 SV=1
Length = 421
Score = 33.1 bits (74), Expect = 0.57, Method: Composition-based stats.
Identities = 12/32 (37%), Positives = 22/32 (68%)
Query: 13 SVQEILLEMRHYRMGLIQTPDQLRFSYQAIIE 44
++ I+ +MR R G+IQT +Q +F Y+ ++E
Sbjct: 381 NIMNIVTQMRKQRFGMIQTKEQYQFCYEIVLE 412
>sp|Q61152|PTN18_MOUSE Tyrosine-protein phosphatase non-receptor type 18 OS=Mus musculus
GN=Ptpn18 PE=1 SV=1
Length = 453
Score = 32.7 bits (73), Expect = 0.68, Method: Composition-based stats.
Identities = 13/34 (38%), Positives = 21/34 (61%)
Query: 11 NVSVQEILLEMRHYRMGLIQTPDQLRFSYQAIIE 44
N S+ +++LEMR R +QT +Q RF Y + +
Sbjct: 257 NFSLFQVVLEMRKQRPAAVQTEEQYRFLYHTVAQ 290
>sp|P25044|PTP1_YEAST Tyrosine-protein phosphatase 1 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=PTP1 PE=1 SV=1
Length = 335
Score = 32.3 bits (72), Expect = 0.81, Method: Composition-based stats.
Identities = 12/28 (42%), Positives = 20/28 (71%)
Query: 14 VQEILLEMRHYRMGLIQTPDQLRFSYQA 41
+++I+L++R RM ++QT DQ F Y A
Sbjct: 297 IEQIVLQLRSQRMKMVQTKDQFLFIYHA 324
>sp|O55082|PTN20_MOUSE Tyrosine-protein phosphatase non-receptor type 20 OS=Mus musculus
GN=Ptpn20 PE=1 SV=1
Length = 426
Score = 32.3 bits (72), Expect = 0.82, Method: Composition-based stats.
Identities = 12/31 (38%), Positives = 21/31 (67%)
Query: 14 VQEILLEMRHYRMGLIQTPDQLRFSYQAIIE 44
+ I+ +MR R G+IQT +Q +F Y+ ++E
Sbjct: 387 IMNIVTQMRKQRCGMIQTKEQYQFCYEIVLE 417
>sp|Q9Y2R2|PTN22_HUMAN Tyrosine-protein phosphatase non-receptor type 22 OS=Homo sapiens
GN=PTPN22 PE=1 SV=2
Length = 807
Score = 32.3 bits (72), Expect = 0.88, Method: Composition-based stats.
Identities = 17/42 (40%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Query: 4 ISDGEI-NNVSVQEILLEMRHYRMGLIQTPDQLRFSYQAIIE 44
+ DG I N SV ++ EMR R L+QT +Q Y A++E
Sbjct: 247 LKDGIIPENFSVFSLIREMRTQRPSLVQTQEQYELVYNAVLE 288
>sp|O35239|PTN9_MOUSE Tyrosine-protein phosphatase non-receptor type 9 OS=Mus musculus
GN=Ptpn9 PE=2 SV=2
Length = 593
Score = 32.3 bits (72), Expect = 0.91, Method: Composition-based stats.
Identities = 15/37 (40%), Positives = 23/37 (62%)
Query: 8 EINNVSVQEILLEMRHYRMGLIQTPDQLRFSYQAIIE 44
E+ ++V + + MR R IQTP+Q F Y+AI+E
Sbjct: 537 ELGTLNVFQTVSRMRTQRAFSIQTPEQYYFCYKAILE 573
>sp|Q641Z2|PTN9_RAT Tyrosine-protein phosphatase non-receptor type 9 OS=Rattus
norvegicus GN=Ptpn9 PE=2 SV=1
Length = 593
Score = 32.3 bits (72), Expect = 0.96, Method: Composition-based stats.
Identities = 15/37 (40%), Positives = 23/37 (62%)
Query: 8 EINNVSVQEILLEMRHYRMGLIQTPDQLRFSYQAIIE 44
E+ ++V + + MR R IQTP+Q F Y+AI+E
Sbjct: 537 ELGTLNVFQTVSRMRTQRAFSIQTPEQYYFCYKAILE 573
>sp|P43378|PTN9_HUMAN Tyrosine-protein phosphatase non-receptor type 9 OS=Homo sapiens
GN=PTPN9 PE=1 SV=1
Length = 593
Score = 32.3 bits (72), Expect = 0.96, Method: Composition-based stats.
Identities = 15/37 (40%), Positives = 23/37 (62%)
Query: 8 EINNVSVQEILLEMRHYRMGLIQTPDQLRFSYQAIIE 44
E+ ++V + + MR R IQTP+Q F Y+AI+E
Sbjct: 537 ELGTLNVFQTVSRMRTQRAFSIQTPEQYYFCYKAILE 573
>sp|O82656|PTP1_ARATH Protein-tyrosine-phosphatase PTP1 OS=Arabidopsis thaliana GN=PTP1
PE=1 SV=1
Length = 340
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 13/44 (29%), Positives = 27/44 (61%)
Query: 1 MHKISDGEINNVSVQEILLEMRHYRMGLIQTPDQLRFSYQAIIE 44
+ +I G+++ + + + + R R+G++QT DQ F Y AI++
Sbjct: 282 IQRILAGDMSALDLAKTVALFRKQRIGMVQTMDQYFFCYNAIVD 325
>sp|E9Q612|PTPRO_MOUSE Receptor-type tyrosine-protein phosphatase O OS=Mus musculus GN=Ptpro
PE=1 SV=1
Length = 1226
Score = 31.6 bits (70), Expect = 1.5, Method: Composition-based stats.
Identities = 15/42 (35%), Positives = 24/42 (57%), Gaps = 2/42 (4%)
Query: 1 MHKISDGEINNVSVQEILLEMRHYRMGLIQTPDQLRFSYQAI 42
+ I D E V + ++ EMR YRM ++QT +Q F +Q +
Sbjct: 1163 LQHIRDHEF--VDILGLVSEMRSYRMSMVQTEEQYIFIHQCV 1202
>sp|Q16827|PTPRO_HUMAN Receptor-type tyrosine-protein phosphatase O OS=Homo sapiens GN=PTPRO
PE=1 SV=2
Length = 1216
Score = 31.6 bits (70), Expect = 1.6, Method: Composition-based stats.
Identities = 18/63 (28%), Positives = 32/63 (50%), Gaps = 7/63 (11%)
Query: 1 MHKISDGEINNVSVQEILLEMRHYRMGLIQTPDQLRFSYQAIIEGIHTDW-ETDDELCLA 59
+ I D E V + ++ EMR YRM ++QT +Q F +Q + W + + C++
Sbjct: 1153 LQHIRDHEF--VDILGLVSEMRSYRMSMVQTEEQYIFIHQC----VQLMWMKKKQQFCIS 1206
Query: 60 DEV 62
D +
Sbjct: 1207 DVI 1209
>sp|Q8R7N2|GCH1_THETN GTP cyclohydrolase 1 OS=Thermoanaerobacter tengcongensis (strain
DSM 15242 / JCM 11007 / NBRC 100824 / MB4) GN=folE PE=3
SV=1
Length = 188
Score = 30.8 bits (68), Expect = 2.7, Method: Composition-based stats.
Identities = 12/25 (48%), Positives = 18/25 (72%)
Query: 25 RMGLIQTPDQLRFSYQAIIEGIHTD 49
R GL++TPD++ Y+ I G+HTD
Sbjct: 24 REGLLETPDRVARMYEEIFSGLHTD 48
>sp|Q8ISC9|CSW_DROSI Tyrosine-protein phosphatase corkscrew (Fragment) OS=Drosophila
simulans GN=csw PE=3 SV=1
Length = 555
Score = 30.4 bits (67), Expect = 3.6, Method: Composition-based stats.
Identities = 14/45 (31%), Positives = 23/45 (51%)
Query: 4 ISDGEINNVSVQEILLEMRHYRMGLIQTPDQLRFSYQAIIEGIHT 48
+ +G + +Q + +R R GL+QT Q +F Y A+ I T
Sbjct: 314 VRNGLDTEIDIQRTIQMVRSQRSGLVQTEAQYKFVYYAVQHYIQT 358
>sp|B0K5C1|GCH1_THEPX GTP cyclohydrolase 1 OS=Thermoanaerobacter sp. (strain X514)
GN=folE PE=3 SV=1
Length = 188
Score = 30.4 bits (67), Expect = 3.6, Method: Composition-based stats.
Identities = 12/25 (48%), Positives = 18/25 (72%)
Query: 25 RMGLIQTPDQLRFSYQAIIEGIHTD 49
R GL++TPD++ Y+ I G+HTD
Sbjct: 24 REGLLETPDRVARMYEEIFAGLHTD 48
>sp|B0KCE5|GCH1_THEP3 GTP cyclohydrolase 1 OS=Thermoanaerobacter pseudethanolicus
(strain ATCC 33223 / 39E) GN=folE PE=3 SV=1
Length = 188
Score = 30.4 bits (67), Expect = 3.6, Method: Composition-based stats.
Identities = 12/25 (48%), Positives = 18/25 (72%)
Query: 25 RMGLIQTPDQLRFSYQAIIEGIHTD 49
R GL++TPD++ Y+ I G+HTD
Sbjct: 24 REGLLETPDRVARMYEEIFAGLHTD 48
>sp|P29349|CSW_DROME Tyrosine-protein phosphatase corkscrew OS=Drosophila melanogaster
GN=csw PE=1 SV=2
Length = 845
Score = 30.4 bits (67), Expect = 3.7, Method: Composition-based stats.
Identities = 14/45 (31%), Positives = 23/45 (51%)
Query: 4 ISDGEINNVSVQEILLEMRHYRMGLIQTPDQLRFSYQAIIEGIHT 48
+ +G + +Q + +R R GL+QT Q +F Y A+ I T
Sbjct: 604 VRNGLDTEIDIQRTIQMVRSQRSGLVQTEAQYKFVYYAVQHYIQT 648
>sp|Q4JDL3|PTN20_HUMAN Tyrosine-protein phosphatase non-receptor type 20 OS=Homo sapiens
GN=PTPN20A PE=1 SV=1
Length = 420
Score = 30.0 bits (66), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 11/34 (32%), Positives = 22/34 (64%)
Query: 11 NVSVQEILLEMRHYRMGLIQTPDQLRFSYQAIIE 44
+ ++ +I+ +MR R G++QT +Q F Y ++E
Sbjct: 378 SFNIMDIVAQMREQRSGMVQTKEQYHFCYDIVLE 411
>sp|Q24708|CSW_DROVI Tyrosine-protein phosphatase corkscrew (Fragment) OS=Drosophila
virilis GN=csw PE=3 SV=1
Length = 764
Score = 29.6 bits (65), Expect = 6.4, Method: Composition-based stats.
Identities = 13/45 (28%), Positives = 23/45 (51%)
Query: 4 ISDGEINNVSVQEILLEMRHYRMGLIQTPDQLRFSYQAIIEGIHT 48
+ +G + +Q + +R R G++QT Q +F Y A+ I T
Sbjct: 481 VRNGLDTEIDIQRTIQMVRSQRSGMVQTEAQYKFVYYAVQHYIQT 525
>sp|P29350|PTN6_HUMAN Tyrosine-protein phosphatase non-receptor type 6 OS=Homo sapiens
GN=PTPN6 PE=1 SV=1
Length = 595
Score = 29.3 bits (64), Expect = 6.9, Method: Composition-based stats.
Identities = 13/38 (34%), Positives = 23/38 (60%)
Query: 11 NVSVQEILLEMRHYRMGLIQTPDQLRFSYQAIIEGIHT 48
++ +Q+ + +R R G++QT Q +F Y AI + I T
Sbjct: 481 DIDIQKTIQMVRAQRSGMVQTEAQYKFIYVAIAQFIET 518
>sp|Q8FMG3|GCH1_COREF GTP cyclohydrolase 1 OS=Corynebacterium efficiens (strain DSM
44549 / YS-314 / AJ 12310 / JCM 11189 / NBRC 100395)
GN=folE PE=3 SV=1
Length = 197
Score = 29.3 bits (64), Expect = 7.5, Method: Composition-based stats.
Identities = 15/46 (32%), Positives = 27/46 (58%), Gaps = 2/46 (4%)
Query: 6 DGEINNVSVQEILLEMRH--YRMGLIQTPDQLRFSYQAIIEGIHTD 49
D E +V+E+L+ + R GL++TP ++ +Y+ I G+H D
Sbjct: 12 DQERAEAAVRELLIAVGENPEREGLLETPARVARAYREIFAGLHED 57
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.137 0.406
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 23,829,820
Number of Sequences: 539616
Number of extensions: 696322
Number of successful extensions: 2018
Number of sequences better than 100.0: 33
Number of HSP's better than 100.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 1986
Number of HSP's gapped (non-prelim): 33
length of query: 62
length of database: 191,569,459
effective HSP length: 34
effective length of query: 28
effective length of database: 173,222,515
effective search space: 4850230420
effective search space used: 4850230420
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)