Query psy4351
Match_columns 62
No_of_seqs 114 out of 1068
Neff 6.5
Searched_HMMs 46136
Date Fri Aug 16 23:21:25 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4351.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/4351hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PHA02740 protein tyrosine phos 99.4 4.3E-13 9.3E-18 91.4 3.2 43 9-51 251-293 (298)
2 PHA02742 protein tyrosine phos 99.3 1.1E-12 2.4E-17 89.2 3.7 42 9-50 259-300 (303)
3 PHA02738 hypothetical protein; 99.2 5.3E-12 1.1E-16 86.6 3.4 48 4-51 251-299 (320)
4 PHA02746 protein tyrosine phos 99.2 9.4E-12 2E-16 85.4 3.6 45 5-49 272-317 (323)
5 PHA02747 protein tyrosine phos 99.1 4.4E-11 9.6E-16 81.7 3.6 42 9-50 259-303 (312)
6 KOG0792|consensus 99.1 7.9E-11 1.7E-15 90.7 4.0 46 3-50 1089-1134(1144)
7 KOG4228|consensus 99.1 3.2E-11 6.9E-16 92.9 1.6 45 3-47 1041-1086(1087)
8 KOG4228|consensus 99.0 2.2E-10 4.7E-15 88.4 2.1 47 5-51 755-802 (1087)
9 KOG0790|consensus 98.9 8.2E-10 1.8E-14 80.1 3.1 48 4-51 478-526 (600)
10 KOG0791|consensus 98.9 2.2E-09 4.8E-14 75.6 3.7 43 9-51 317-359 (374)
11 PF00102 Y_phosphatase: Protei 98.8 1.3E-08 2.9E-13 64.5 4.4 35 10-44 201-235 (235)
12 smart00194 PTPc Protein tyrosi 98.7 7.3E-09 1.6E-13 68.0 2.7 34 10-43 224-257 (258)
13 cd00047 PTPc Protein tyrosine 98.7 1.7E-08 3.6E-13 65.2 2.7 34 10-43 197-230 (231)
14 COG5599 PTP2 Protein tyrosine 98.6 3.1E-08 6.6E-13 68.0 3.0 34 14-47 262-295 (302)
15 smart00404 PTPc_motif Protein 98.5 1.1E-07 2.3E-12 53.6 3.7 34 10-43 71-104 (105)
16 smart00012 PTPc_DSPc Protein t 98.5 1.1E-07 2.3E-12 53.6 3.7 34 10-43 71-104 (105)
17 KOG0789|consensus 98.4 7.8E-07 1.7E-11 61.2 4.9 42 10-51 331-372 (415)
18 KOG0793|consensus 98.2 6.5E-07 1.4E-11 68.0 2.6 47 4-51 954-1000(1004)
19 PRK15375 pathogenicity island 98.0 8.5E-06 1.8E-10 59.9 4.6 37 10-46 493-530 (535)
20 KOG1720|consensus 94.9 0.044 9.6E-07 36.8 3.7 32 12-43 175-206 (225)
21 PTZ00242 protein tyrosine phos 94.7 0.039 8.4E-07 34.9 2.9 31 11-42 125-155 (166)
22 PTZ00393 protein tyrosine phos 90.1 0.41 8.8E-06 32.5 3.2 30 12-42 197-226 (241)
23 COG2453 CDC14 Predicted protei 55.8 23 0.00049 22.3 3.6 34 12-45 134-167 (180)
24 cd00127 DSPc Dual specificity 54.3 30 0.00065 19.9 3.7 28 11-38 108-135 (139)
25 smart00195 DSPc Dual specifici 51.0 34 0.00073 19.9 3.6 27 12-38 106-132 (138)
26 PF14293 YWFCY: YWFCY protein 49.6 15 0.00034 20.1 1.8 13 33-45 27-39 (61)
27 PF00782 DSPc: Dual specificit 45.9 25 0.00055 20.2 2.5 28 12-39 101-128 (133)
28 KOG2836|consensus 42.0 20 0.00044 23.0 1.7 24 14-38 126-149 (173)
29 PRK14745 RepA leader peptide T 39.9 28 0.00061 15.8 1.6 20 32-51 4-23 (26)
30 KOG0826|consensus 34.8 13 0.00027 26.8 -0.1 23 28-50 314-336 (357)
31 PRK12361 hypothetical protein; 31.9 60 0.0013 23.8 3.0 29 11-39 203-231 (547)
32 TIGR03475 tap_IncFII_lead RepA 25.5 82 0.0018 14.3 2.1 17 32-48 4-20 (26)
33 PF08048 RepA1_leader: Tap Rep 25.4 81 0.0018 14.2 2.3 16 32-47 4-19 (25)
34 PRK14746 RepA leader peptide T 22.8 56 0.0012 14.8 1.0 9 32-40 4-12 (26)
35 PF10831 DUF2556: Protein of u 22.6 1E+02 0.0022 16.2 2.1 24 35-58 14-37 (53)
No 1
>PHA02740 protein tyrosine phosphatase; Provisional
Probab=99.36 E-value=4.3e-13 Score=91.42 Aligned_cols=43 Identities=19% Similarity=0.380 Sum_probs=39.8
Q ss_pred CCcCCHHHHHHHHHhcCccccCChHHHHHHHHHHHHHHHhccc
Q psy4351 9 INNVSVQEILLEMRHYRMGLIQTPDQLRFSYQAIIEGIHTDWE 51 (62)
Q Consensus 9 ~~~vdi~~~V~~lR~qR~~mVqt~~QY~Fiy~~i~~~~~~~~~ 51 (62)
++.+||+++|++||+||++||||.+||.|||.++++|+...+.
T Consensus 251 ~~~vdi~~~V~~lR~qR~~~Vqt~~QY~F~y~~l~~yl~~~~~ 293 (298)
T PHA02740 251 TGMLSIANALKKVRQKKYGCMNCLDDYVFCYHLIAAYLKEKFD 293 (298)
T ss_pred cCcccHHHHHHHHHhhCccccCCHHHHHHHHHHHHHHHHHhhc
Confidence 4789999999999999999999999999999999999887643
No 2
>PHA02742 protein tyrosine phosphatase; Provisional
Probab=99.32 E-value=1.1e-12 Score=89.21 Aligned_cols=42 Identities=17% Similarity=0.203 Sum_probs=39.0
Q ss_pred CCcCCHHHHHHHHHhcCccccCChHHHHHHHHHHHHHHHhcc
Q psy4351 9 INNVSVQEILLEMRHYRMGLIQTPDQLRFSYQAIIEGIHTDW 50 (62)
Q Consensus 9 ~~~vdi~~~V~~lR~qR~~mVqt~~QY~Fiy~~i~~~~~~~~ 50 (62)
.+.+||+++|+.||+||++||||.+||.|||+++++|+....
T Consensus 259 ~~~v~v~~~V~~lR~qR~~~Vqt~~QY~F~y~~l~~y~~~~~ 300 (303)
T PHA02742 259 RAIIPLLSIVRDLRKQRHNCLSLPQQYIFCYFIVLIFAKLMA 300 (303)
T ss_pred cCCCCHHHHHHHHHhhcccccCCHHHHHHHHHHHHHHHHHhc
Confidence 478999999999999999999999999999999999987653
No 3
>PHA02738 hypothetical protein; Provisional
Probab=99.24 E-value=5.3e-12 Score=86.58 Aligned_cols=48 Identities=25% Similarity=0.279 Sum_probs=41.5
Q ss_pred cccCC-CCcCCHHHHHHHHHhcCccccCChHHHHHHHHHHHHHHHhccc
Q psy4351 4 ISDGE-INNVSVQEILLEMRHYRMGLIQTPDQLRFSYQAIIEGIHTDWE 51 (62)
Q Consensus 4 ie~~~-~~~vdi~~~V~~lR~qR~~mVqt~~QY~Fiy~~i~~~~~~~~~ 51 (62)
|++.+ .+.+||+++|++||+||++||||.+||.|||+++++|+.....
T Consensus 251 i~~~~~~~~vdv~~~V~~lR~qR~~~vqt~~QY~F~y~~l~~y~~~~~~ 299 (320)
T PHA02738 251 ISRFDACATVSIPSIVSSIRNQRYYSLFIPFQYFFCYRAVKRYVNLTVN 299 (320)
T ss_pred HHHHHhcCCcCHHHHHHHHHhhhhhccCCHHHHHHHHHHHHHHHHhcCc
Confidence 34444 4789999999999999999999999999999999999876544
No 4
>PHA02746 protein tyrosine phosphatase; Provisional
Probab=99.22 E-value=9.4e-12 Score=85.44 Aligned_cols=45 Identities=29% Similarity=0.440 Sum_probs=39.4
Q ss_pred ccCC-CCcCCHHHHHHHHHhcCccccCChHHHHHHHHHHHHHHHhc
Q psy4351 5 SDGE-INNVSVQEILLEMRHYRMGLIQTPDQLRFSYQAIIEGIHTD 49 (62)
Q Consensus 5 e~~~-~~~vdi~~~V~~lR~qR~~mVqt~~QY~Fiy~~i~~~~~~~ 49 (62)
++.+ ++.+||+++|++||+||++||||.+||.|||+++.+++...
T Consensus 272 ~~l~~~~~vdv~~~V~~lR~qR~~~Vqt~~QY~F~y~~l~~~l~~~ 317 (323)
T PHA02746 272 EQLEKEKEVCLGEIVLKIRKQRHSSVFLPEQYAFCYKALKYAIIEE 317 (323)
T ss_pred HHHHhcCCCCHHHHHHHHHhcccccCCCHHHHHHHHHHHHHHHHHh
Confidence 3334 47899999999999999999999999999999999987543
No 5
>PHA02747 protein tyrosine phosphatase; Provisional
Probab=99.13 E-value=4.4e-11 Score=81.73 Aligned_cols=42 Identities=14% Similarity=0.098 Sum_probs=38.5
Q ss_pred CCcCCHHHHHHHHHhcCccccCChHHHHHH---HHHHHHHHHhcc
Q psy4351 9 INNVSVQEILLEMRHYRMGLIQTPDQLRFS---YQAIIEGIHTDW 50 (62)
Q Consensus 9 ~~~vdi~~~V~~lR~qR~~mVqt~~QY~Fi---y~~i~~~~~~~~ 50 (62)
.+.+||+++|+.||.||++||||.+||.|| |+++..++....
T Consensus 259 ~~~v~v~~~V~~lR~qR~~~Vqt~~QY~F~~~~Y~~l~~~~~~~~ 303 (312)
T PHA02747 259 RKAICLAKTAEKIREQRHAGIMNFDDYLFIQPGYEVLHYFLSKIK 303 (312)
T ss_pred cCCCCHHHHHHHHHhccccccCCHHHHHHHHHHHHHHHHHHHHhh
Confidence 478999999999999999999999999999 999998877653
No 6
>KOG0792|consensus
Probab=99.09 E-value=7.9e-11 Score=90.67 Aligned_cols=46 Identities=24% Similarity=0.417 Sum_probs=41.8
Q ss_pred ccccCCCCcCCHHHHHHHHHhcCccccCChHHHHHHHHHHHHHHHhcc
Q psy4351 3 KISDGEINNVSVQEILLEMRHYRMGLIQTPDQLRFSYQAIIEGIHTDW 50 (62)
Q Consensus 3 ~ie~~~~~~vdi~~~V~~lR~qR~~mVqt~~QY~Fiy~~i~~~~~~~~ 50 (62)
|||++ ..+||+.+|+.||.||++||||..||.|||++|+.+++...
T Consensus 1089 lle~N--e~vdi~divr~mR~QR~~mVQT~~QYkFVyevil~~l~~~~ 1134 (1144)
T KOG0792|consen 1089 LLEHN--EPVDILDIVRTMRDQRAMMVQTLSQYKFVYEVILRVLKRGR 1134 (1144)
T ss_pred HHhcC--CCCCHHHHHHHHHHHHhhhccchHHhhHHHHHHHHHHHhcc
Confidence 57777 46999999999999999999999999999999999987654
No 7
>KOG4228|consensus
Probab=99.09 E-value=3.2e-11 Score=92.88 Aligned_cols=45 Identities=24% Similarity=0.375 Sum_probs=41.6
Q ss_pred ccccCC-CCcCCHHHHHHHHHhcCccccCChHHHHHHHHHHHHHHH
Q psy4351 3 KISDGE-INNVSVQEILLEMRHYRMGLIQTPDQLRFSYQAIIEGIH 47 (62)
Q Consensus 3 ~ie~~~-~~~vdi~~~V~~lR~qR~~mVqt~~QY~Fiy~~i~~~~~ 47 (62)
++|+.+ ++.||||++|+.||.+||+||++.+||.|||+++++|+.
T Consensus 1041 l~e~~~~e~~vDVfq~vk~Lr~~rp~mv~t~~QY~fcYdv~~~y~~ 1086 (1087)
T KOG4228|consen 1041 LLERMRKEGVVDVFQTVKTLRFQRPGMVDTSDQYQFCYDVALEYLG 1086 (1087)
T ss_pred HHHHHhhcCceeeehhhhhhhhcCccccCcHHHHHHHHHHHHHhhc
Confidence 567777 799999999999999999999999999999999999864
No 8
>KOG4228|consensus
Probab=98.97 E-value=2.2e-10 Score=88.36 Aligned_cols=47 Identities=21% Similarity=0.220 Sum_probs=41.6
Q ss_pred ccCC-CCcCCHHHHHHHHHhcCccccCChHHHHHHHHHHHHHHHhccc
Q psy4351 5 SDGE-INNVSVQEILLEMRHYRMGLIQTPDQLRFSYQAIIEGIHTDWE 51 (62)
Q Consensus 5 e~~~-~~~vdi~~~V~~lR~qR~~mVqt~~QY~Fiy~~i~~~~~~~~~ 51 (62)
+..+ ++.+||+..|+.||.||+.||||.+||.|||++++++..+...
T Consensus 755 ~~~~~e~~vdiy~~v~~lR~QR~~mVQt~eQYiFi~~AllE~~~~G~T 802 (1087)
T KOG4228|consen 755 DRLECEGKVDIYGHVKTLRRQRNNMVQTEEQYIFIHEALLEACLCGDT 802 (1087)
T ss_pred HHHHhhCccceechhHHHHhccccccccHHHHHHHHHHHHHHHhcCCc
Confidence 4444 5889999999999999999999999999999999999876543
No 9
>KOG0790|consensus
Probab=98.91 E-value=8.2e-10 Score=80.07 Aligned_cols=48 Identities=27% Similarity=0.371 Sum_probs=41.5
Q ss_pred cccCC-CCcCCHHHHHHHHHhcCccccCChHHHHHHHHHHHHHHHhccc
Q psy4351 4 ISDGE-INNVSVQEILLEMRHYRMGLIQTPDQLRFSYQAIIEGIHTDWE 51 (62)
Q Consensus 4 ie~~~-~~~vdi~~~V~~lR~qR~~mVqt~~QY~Fiy~~i~~~~~~~~~ 51 (62)
|.+.+ +..+||+.++++.|.||.|||||+.||.|+|.++..|+.....
T Consensus 478 I~~~Gldc~iDi~ktIqmVRsqRSGmVQTEaQYkFiY~Avqhyietl~~ 526 (600)
T KOG0790|consen 478 IREKGLDCDIDIQKTIQMVRSQRSGMVQTEAQYKFIYVAVQHYIETLQK 526 (600)
T ss_pred HHhcCCCCcccHHHHHHHHHHHhcchhhhHHhHHHHHHHHHHHHHHHHH
Confidence 33444 6789999999999999999999999999999999999876543
No 10
>KOG0791|consensus
Probab=98.86 E-value=2.2e-09 Score=75.60 Aligned_cols=43 Identities=30% Similarity=0.433 Sum_probs=39.5
Q ss_pred CCcCCHHHHHHHHHhcCccccCChHHHHHHHHHHHHHHHhccc
Q psy4351 9 INNVSVQEILLEMRHYRMGLIQTPDQLRFSYQAIIEGIHTDWE 51 (62)
Q Consensus 9 ~~~vdi~~~V~~lR~qR~~mVqt~~QY~Fiy~~i~~~~~~~~~ 51 (62)
+..+|++.+|.++|.+|+.||||++||.|+|.++++.+.....
T Consensus 317 ~~~vdi~~iv~~lR~~R~~mVqte~Qyvfl~~c~~~~l~~~~~ 359 (374)
T KOG0791|consen 317 EETVDIFGVVLELRSARMLMVQTEDQYVFLHQCVLESLQGKKP 359 (374)
T ss_pred cccccHHHHHHHhhhccccccchHHHHHHHHHHHHHHHhCCCc
Confidence 4689999999999999999999999999999999998876655
No 11
>PF00102 Y_phosphatase: Protein-tyrosine phosphatase; InterPro: IPR000242 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry repesents several receptor and non-receptor protein-tyrosine phosphatases. Structurally, all known receptor PTPases, are made up of a variable length extracellular domain, followed by a transmembrane region and a C-terminal catalytic cytoplasmic domain. Some of the receptor PTPases contain fibronectin type III (FN-III) repeats, immunoglobulin-like domains, MAM domains or carbonic anhydrase-like domains in their extracellular region. The cytoplasmic region generally contains two copies of the PTPase domain. The first seems to have enzymatic activity, while the second is inactive. The inactive domains of tandem phosphatases can be divided into two classes. Those which bind phosphorylated tyrosine residues may recruit multi-phosphorylated substrates for the adjacent active domains and are more conserved, while the other class have accumulated several variable amino acid substitutions and have a complete loss of tyrosine binding capability. The second class shows a release of evolutionary constraint for the sites around the catalytic centre, which emphasises a difference in function from the first group. There is a region of higher conservation common to both classes, suggesting a new regulatory centre []. PTPase domains consist of about 300 amino acids. There are two conserved cysteines, the second one has been shown to be absolutely required for activity. Furthermore, a number of conserved residues in its immediate vicinity have also been shown to be important.; GO: 0004725 protein tyrosine phosphatase activity, 0006470 protein dephosphorylation; PDB: 3O4T_A 3O4S_A 3O4U_A 2A3K_A 2QDP_A 2QDC_A 2QDM_A 2HVL_A 1ZC0_A 3D44_A ....
Probab=98.75 E-value=1.3e-08 Score=64.49 Aligned_cols=35 Identities=46% Similarity=0.770 Sum_probs=33.4
Q ss_pred CcCCHHHHHHHHHhcCccccCChHHHHHHHHHHHH
Q psy4351 10 NNVSVQEILLEMRHYRMGLIQTPDQLRFSYQAIIE 44 (62)
Q Consensus 10 ~~vdi~~~V~~lR~qR~~mVqt~~QY~Fiy~~i~~ 44 (62)
+.+|++++++.+|++|+++|++..||.|+|.+++|
T Consensus 201 ~~~~v~~~~~~lR~~R~~~i~~~~qy~f~~~~~~e 235 (235)
T PF00102_consen 201 GEVDVFEIVKKLRQQRPGAIQSPEQYRFCYMAVLE 235 (235)
T ss_dssp SEECHHHHHHHHHTTSTTSSSSHHHHHHHHHHHHH
T ss_pred cchhhHHHHHHHHhhCCCccCCHHHHHHHHHHHhC
Confidence 56999999999999999999999999999999986
No 12
>smart00194 PTPc Protein tyrosine phosphatase, catalytic domain.
Probab=98.73 E-value=7.3e-09 Score=68.03 Aligned_cols=34 Identities=41% Similarity=0.672 Sum_probs=32.5
Q ss_pred CcCCHHHHHHHHHhcCccccCChHHHHHHHHHHH
Q psy4351 10 NNVSVQEILLEMRHYRMGLIQTPDQLRFSYQAII 43 (62)
Q Consensus 10 ~~vdi~~~V~~lR~qR~~mVqt~~QY~Fiy~~i~ 43 (62)
+.+|++++++.+|+||+++|++.+||.|||.+++
T Consensus 224 ~~v~v~~~v~~lR~~R~~~v~~~~Qy~f~~~~l~ 257 (258)
T smart00194 224 KEVDIFEIVKELRSQRPGMVQTEEQYIFLYRAIL 257 (258)
T ss_pred CCCCHHHHHHHHHhccccccCCHHHHHHHHHHHh
Confidence 5799999999999999999999999999999986
No 13
>cd00047 PTPc Protein tyrosine phosphatases (PTP) catalyze the dephosphorylation of phosphotyrosine peptides; they regulate phosphotyrosine levels in signal transduction pathways. The depth of the active site cleft renders the enzyme specific for phosphorylated Tyr (pTyr) residues, instead of pSer or pThr. This family has a distinctive active site signature motif, HCSAGxGRxG. Characterized as either transmembrane, receptor-like or non-transmembrane (soluble) PTPs. Receptor-like PTP domains tend to occur in two copies in the cytoplasmic region of the transmembrane proteins, only one copy may be active.
Probab=98.66 E-value=1.7e-08 Score=65.21 Aligned_cols=34 Identities=35% Similarity=0.574 Sum_probs=32.5
Q ss_pred CcCCHHHHHHHHHhcCccccCChHHHHHHHHHHH
Q psy4351 10 NNVSVQEILLEMRHYRMGLIQTPDQLRFSYQAII 43 (62)
Q Consensus 10 ~~vdi~~~V~~lR~qR~~mVqt~~QY~Fiy~~i~ 43 (62)
+.+|++++++.+|++|+++|+|.+||.|||.+++
T Consensus 197 ~~~~~~~~v~~iR~~R~~~v~~~~Qy~f~~~~l~ 230 (231)
T cd00047 197 GVVDIFQTVKELRSQRPGMVQTEEQYIFLYRAIL 230 (231)
T ss_pred CCCCHHHHHHHHHhccccccCCHHHHHHHHHHHh
Confidence 5799999999999999999999999999999986
No 14
>COG5599 PTP2 Protein tyrosine phosphatase [Signal transduction mechanisms]
Probab=98.61 E-value=3.1e-08 Score=68.01 Aligned_cols=34 Identities=32% Similarity=0.573 Sum_probs=32.4
Q ss_pred HHHHHHHHHhcCccccCChHHHHHHHHHHHHHHH
Q psy4351 14 VQEILLEMRHYRMGLIQTPDQLRFSYQAIIEGIH 47 (62)
Q Consensus 14 i~~~V~~lR~qR~~mVqt~~QY~Fiy~~i~~~~~ 47 (62)
|+++|..||+||+.|||+..||.|+|++++++..
T Consensus 262 if~iV~~LRsQRmkmVQn~~Qf~flY~~~~~l~~ 295 (302)
T COG5599 262 IFQIVLSLRSQRMKMVQNKTQFKFLYDAFLELNK 295 (302)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 8999999999999999999999999999999873
No 15
>smart00404 PTPc_motif Protein tyrosine phosphatase, catalytic domain motif.
Probab=98.54 E-value=1.1e-07 Score=53.57 Aligned_cols=34 Identities=32% Similarity=0.570 Sum_probs=32.2
Q ss_pred CcCCHHHHHHHHHhcCccccCChHHHHHHHHHHH
Q psy4351 10 NNVSVQEILLEMRHYRMGLIQTPDQLRFSYQAII 43 (62)
Q Consensus 10 ~~vdi~~~V~~lR~qR~~mVqt~~QY~Fiy~~i~ 43 (62)
+.+|++++++.+|.+|++++++..||.|+|.+++
T Consensus 71 ~~~~~~~~~~~ir~~r~~~~~~~~q~~~~~~~~~ 104 (105)
T smart00404 71 GEVDIFQTVKELRKQRPGMVQTFEQYLFLYRALL 104 (105)
T ss_pred CCCCHHHHHHHHHhhhhhhCCcHHHHHHHHHHHh
Confidence 4699999999999999999999999999999876
No 16
>smart00012 PTPc_DSPc Protein tyrosine phosphatase, catalytic domain, undefined specificity. Protein tyrosine phosphatases. Homologues detected by this profile and not by those of "PTPc" or "DSPc" are predicted to be protein phosphatases with a similar fold to DSPs and PTPs, yet with unpredicted specificities.
Probab=98.54 E-value=1.1e-07 Score=53.57 Aligned_cols=34 Identities=32% Similarity=0.570 Sum_probs=32.2
Q ss_pred CcCCHHHHHHHHHhcCccccCChHHHHHHHHHHH
Q psy4351 10 NNVSVQEILLEMRHYRMGLIQTPDQLRFSYQAII 43 (62)
Q Consensus 10 ~~vdi~~~V~~lR~qR~~mVqt~~QY~Fiy~~i~ 43 (62)
+.+|++++++.+|.+|++++++..||.|+|.+++
T Consensus 71 ~~~~~~~~~~~ir~~r~~~~~~~~q~~~~~~~~~ 104 (105)
T smart00012 71 GEVDIFQTVKELRKQRPGMVQTFEQYLFLYRALL 104 (105)
T ss_pred CCCCHHHHHHHHHhhhhhhCCcHHHHHHHHHHHh
Confidence 4699999999999999999999999999999876
No 17
>KOG0789|consensus
Probab=98.36 E-value=7.8e-07 Score=61.24 Aligned_cols=42 Identities=33% Similarity=0.396 Sum_probs=38.1
Q ss_pred CcCCHHHHHHHHHhcCccccCChHHHHHHHHHHHHHHHhccc
Q psy4351 10 NNVSVQEILLEMRHYRMGLIQTPDQLRFSYQAIIEGIHTDWE 51 (62)
Q Consensus 10 ~~vdi~~~V~~lR~qR~~mVqt~~QY~Fiy~~i~~~~~~~~~ 51 (62)
+..|+..++..+|.||+++|||..||.|+|.++++|+.....
T Consensus 331 ~~~~~~~~~~~iR~qR~~~vqt~~Qy~f~~~~~~~~~~~~~~ 372 (415)
T KOG0789|consen 331 GEPPIDEILREIRYQRPGAVQSPLQYLFIYAATLKYIKKVSY 372 (415)
T ss_pred CCccHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHccC
Confidence 567899999999999999999999999999999999887443
No 18
>KOG0793|consensus
Probab=98.24 E-value=6.5e-07 Score=67.96 Aligned_cols=47 Identities=23% Similarity=0.489 Sum_probs=40.7
Q ss_pred cccCCCCcCCHHHHHHHHHhcCccccCChHHHHHHHHHHHHHHHhccc
Q psy4351 4 ISDGEINNVSVQEILLEMRHYRMGLIQTPDQLRFSYQAIIEGIHTDWE 51 (62)
Q Consensus 4 ie~~~~~~vdi~~~V~~lR~qR~~mVqt~~QY~Fiy~~i~~~~~~~~~ 51 (62)
|.+| .+.|||..|+..+|.||+|||.|.+||.|.+.++.+-+..++.
T Consensus 954 m~kG-akeIDIaATlEHlRDQR~GmVaTkdQFef~l~aVAeEVnaiLK 1000 (1004)
T KOG0793|consen 954 MAKG-AKEIDIAATLEHLRDQRPGMVATKDQFEFALTAVAEEVNAILK 1000 (1004)
T ss_pred Hhcc-chhhhHHHHHHHHhhcCCcceeehhhhHHHHHHHHHHHHHHHH
Confidence 3344 3679999999999999999999999999999999998776654
No 19
>PRK15375 pathogenicity island 1 effector protein StpP; Provisional
Probab=98.02 E-value=8.5e-06 Score=59.88 Aligned_cols=37 Identities=8% Similarity=0.153 Sum_probs=33.0
Q ss_pred CcCCHHHHHHHHHhcCcc-ccCChHHHHHHHHHHHHHH
Q psy4351 10 NNVSVQEILLEMRHYRMG-LIQTPDQLRFSYQAIIEGI 46 (62)
Q Consensus 10 ~~vdi~~~V~~lR~qR~~-mVqt~~QY~Fiy~~i~~~~ 46 (62)
+.+|++++|..||.+|++ ||||.+||.|+++.-...+
T Consensus 493 ~~~sle~IV~dlR~qRng~MVQt~eQy~~l~~~~~~~~ 530 (535)
T PRK15375 493 PHSNLEQVRADFRNSRNNRMLEDASQFVQLKAMQAQLL 530 (535)
T ss_pred ccCCHHHHHHHHHhcCCccccccHHHHHHHHHHHHHHh
Confidence 568999999999999999 9999999999998765543
No 20
>KOG1720|consensus
Probab=94.86 E-value=0.044 Score=36.83 Aligned_cols=32 Identities=19% Similarity=0.207 Sum_probs=28.3
Q ss_pred CCHHHHHHHHHhcCccccCChHHHHHHHHHHH
Q psy4351 12 VSVQEILLEMRHYRMGLIQTPDQLRFSYQAII 43 (62)
Q Consensus 12 vdi~~~V~~lR~qR~~mVqt~~QY~Fiy~~i~ 43 (62)
+..-+++-.+|..|||+|++++|+..+++--.
T Consensus 175 ~ta~eaI~~lR~~RpG~V~gpqQ~~l~~~q~~ 206 (225)
T KOG1720|consen 175 MTAGEAIAWLRICRPGAVIGPQQHKLLHKQRD 206 (225)
T ss_pred CCHHHHHHHHHhcCCccccCHHHHHHHHHHHH
Confidence 56678999999999999999999999888655
No 21
>PTZ00242 protein tyrosine phosphatase; Provisional
Probab=94.66 E-value=0.039 Score=34.86 Aligned_cols=31 Identities=23% Similarity=0.217 Sum_probs=26.8
Q ss_pred cCCHHHHHHHHHhcCccccCChHHHHHHHHHH
Q psy4351 11 NVSVQEILLEMRHYRMGLIQTPDQLRFSYQAI 42 (62)
Q Consensus 11 ~vdi~~~V~~lR~qR~~mVqt~~QY~Fiy~~i 42 (62)
.+++.+.++.+|++|++++ +..|+.|+.+-.
T Consensus 125 ~~s~~eAi~~vr~~R~~~i-~~~Q~~~l~~~~ 155 (166)
T PTZ00242 125 GMEPLDAVGFVREKRKGAI-NQTQLQFLKKYK 155 (166)
T ss_pred CCCHHHHHHHHHHHCCCCc-hHHHHHHHHHHH
Confidence 3689999999999999999 589999986644
No 22
>PTZ00393 protein tyrosine phosphatase; Provisional
Probab=90.11 E-value=0.41 Score=32.52 Aligned_cols=30 Identities=23% Similarity=0.286 Sum_probs=25.5
Q ss_pred CCHHHHHHHHHhcCccccCChHHHHHHHHHH
Q psy4351 12 VSVQEILLEMRHYRMGLIQTPDQLRFSYQAI 42 (62)
Q Consensus 12 vdi~~~V~~lR~qR~~mVqt~~QY~Fiy~~i 42 (62)
.+..+.+..+|+.||+.+ +..|+.|+.+--
T Consensus 197 mspeeAI~~VR~~RPgAI-n~~Q~~fL~~y~ 226 (241)
T PTZ00393 197 MDPIDAIVFIRDRRKGAI-NKRQLQFLKAYK 226 (241)
T ss_pred CCHHHHHHHHHHHCCCCC-CHHHHHHHHHHH
Confidence 678899999999999999 578999876543
No 23
>COG2453 CDC14 Predicted protein-tyrosine phosphatase [Signal transduction mechanisms]
Probab=55.75 E-value=23 Score=22.29 Aligned_cols=34 Identities=21% Similarity=0.125 Sum_probs=27.8
Q ss_pred CCHHHHHHHHHhcCccccCChHHHHHHHHHHHHH
Q psy4351 12 VSVQEILLEMRHYRMGLIQTPDQLRFSYQAIIEG 45 (62)
Q Consensus 12 vdi~~~V~~lR~qR~~mVqt~~QY~Fiy~~i~~~ 45 (62)
...-+.+.-+|..|++.+.+..|+.|..+.....
T Consensus 134 ~~~~~~i~~~~~~r~~~v~~~~q~~~~~e~~~~~ 167 (180)
T COG2453 134 SLADEAIAVKRRRRPGAVVTEIQHLFELEQELFR 167 (180)
T ss_pred CCHHHHHHHHHhcCCcccccHHHHHHHHHHHHHH
Confidence 4556778888999999999999999988876554
No 24
>cd00127 DSPc Dual specificity phosphatases (DSP); Ser/Thr and Tyr protein phosphatases. Structurally similar to tyrosine-specific phosphatases but with a shallower active site cleft and a distinctive active site signature motif, HCxxGxxR. Characterized as VHR- or Cdc25-like.
Probab=54.33 E-value=30 Score=19.89 Aligned_cols=28 Identities=14% Similarity=0.071 Sum_probs=22.6
Q ss_pred cCCHHHHHHHHHhcCccccCChHHHHHH
Q psy4351 11 NVSVQEILLEMRHYRMGLIQTPDQLRFS 38 (62)
Q Consensus 11 ~vdi~~~V~~lR~qR~~mVqt~~QY~Fi 38 (62)
..++.+.++.+|++||....+..+...+
T Consensus 108 ~~~~~~a~~~vr~~r~~~~~~~~~~~~l 135 (139)
T cd00127 108 GLSLREAYEFVKSRRPIISPNAGFMRQL 135 (139)
T ss_pred CCCHHHHHHHHHHHCCccCCCHHHHHHH
Confidence 3688999999999999888777666543
No 25
>smart00195 DSPc Dual specificity phosphatase, catalytic domain.
Probab=51.04 E-value=34 Score=19.89 Aligned_cols=27 Identities=15% Similarity=0.005 Sum_probs=22.8
Q ss_pred CCHHHHHHHHHhcCccccCChHHHHHH
Q psy4351 12 VSVQEILLEMRHYRMGLIQTPDQLRFS 38 (62)
Q Consensus 12 vdi~~~V~~lR~qR~~mVqt~~QY~Fi 38 (62)
.++.+.++.+|..||....+..|..-+
T Consensus 106 ~~~~~A~~~v~~~R~~~~p~~~~~~qL 132 (138)
T smart00195 106 LSLNDAYDFVKDRRPIISPNFGFLRQL 132 (138)
T ss_pred CCHHHHHHHHHHHCCccCCCHhHHHHH
Confidence 688999999999999998887776643
No 26
>PF14293 YWFCY: YWFCY protein
Probab=49.64 E-value=15 Score=20.07 Aligned_cols=13 Identities=31% Similarity=0.358 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHH
Q psy4351 33 DQLRFSYQAIIEG 45 (62)
Q Consensus 33 ~QY~Fiy~~i~~~ 45 (62)
-=|.|||.+..+.
T Consensus 27 h~Y~~CY~af~~w 39 (61)
T PF14293_consen 27 HFYWFCYEAFQEW 39 (61)
T ss_pred HHHHHHHHHHHHh
Confidence 4599999988764
No 27
>PF00782 DSPc: Dual specificity phosphatase, catalytic domain; InterPro: IPR000340 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry represents dual specificity protein-tyrosine phosphatases. Ser/Thr and Tyr dual specificity phosphatases are a group of enzymes with both Ser/Thr (3.1.3.16 from EC) and tyrosine specific protein phosphatase (3.1.3.48 from EC) activity able to remove both the serine/threonine or tyrosine-bound phosphate group from a wide range of phosphoproteins, including a number of enzymes which have been phosphorylated under the action of a kinase. Dual specificity protein phosphatases (DSPs) regulate mitogenic signal transduction and control the cell cycle. The crystal structure of a human DSP, vaccinia H1-related phosphatase (or VHR), has been determined at 2.1 angstrom resolution []. A shallow active site pocket in VHR allows for the hydrolysis of phosphorylated serine, threonine, or tyrosine protein residues, whereas the deeper active site of protein tyrosine phosphatases (PTPs) restricts substrate specificity to only phosphotyrosine. Positively charged crevices near the active site may explain the enzyme's preference for substrates with two phosphorylated residues. The VHR structure defines a conserved structural scaffold for both DSPs and PTPs. A "recognition region" connecting helix alpha1 to strand beta1, may determine differences in substrate specificity between VHR, the PTPs, and other DSPs. These proteins may also have inactive phosphatase domains, and dependent on the domain composition this loss of catalytic activity has different effects on protein function. Inactive single domain phosphatases can still specifically bind substrates, and protect again dephosphorylation, while the inactive domains of tandem phosphatases can be further subdivided into two classes. Those which bind phosphorylated tyrosine residues may recruit multi-phosphorylated substrates for the adjacent active domains and are more conserved, while the other class have accumulated several variable amino acid substitutions and have a complete loss of tyrosine binding capability. The second class shows a release of evolutionary constraint for the sites around the catalytic centre, which emphasises a difference in function from the first group. There is a region of higher conservation common to both classes, suggesting a new regulatory centre [].; GO: 0008138 protein tyrosine/serine/threonine phosphatase activity, 0006470 protein dephosphorylation; PDB: 2G6Z_A 1MKP_A 1YZ4_A 2P4D_A 1M3G_A 1ZZW_A 2OUD_A 2HXP_A 3LJ8_A 1OHD_A ....
Probab=45.90 E-value=25 Score=20.20 Aligned_cols=28 Identities=25% Similarity=0.351 Sum_probs=23.3
Q ss_pred CCHHHHHHHHHhcCccccCChHHHHHHH
Q psy4351 12 VSVQEILLEMRHYRMGLIQTPDQLRFSY 39 (62)
Q Consensus 12 vdi~~~V~~lR~qR~~mVqt~~QY~Fiy 39 (62)
.++.+.++.+|..||.+..+..++..++
T Consensus 101 ~~~~~A~~~v~~~rp~~~~~~~~~~~L~ 128 (133)
T PF00782_consen 101 MSLEEAIEYVRSRRPQINPNPSFIRQLY 128 (133)
T ss_dssp SSHHHHHHHHHHHSTTSTHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHCCCCCCCHHHHHHHH
Confidence 5788999999999999988877776554
No 28
>KOG2836|consensus
Probab=41.99 E-value=20 Score=23.01 Aligned_cols=24 Identities=25% Similarity=0.396 Sum_probs=18.4
Q ss_pred HHHHHHHHHhcCccccCChHHHHHH
Q psy4351 14 VQEILLEMRHYRMGLIQTPDQLRFS 38 (62)
Q Consensus 14 i~~~V~~lR~qR~~mVqt~~QY~Fi 38 (62)
-...|..+|++|.|.+.+ .|..|+
T Consensus 126 yedave~ir~krrga~n~-kql~~l 149 (173)
T KOG2836|consen 126 YEDAVEMIRQKRRGAINS-KQLLYL 149 (173)
T ss_pred HHHHHHHHHHHhhccccH-HHHHHH
Confidence 456889999999999876 455554
No 29
>PRK14745 RepA leader peptide Tap; Provisional
Probab=39.90 E-value=28 Score=15.81 Aligned_cols=20 Identities=15% Similarity=0.120 Sum_probs=13.6
Q ss_pred hHHHHHHHHHHHHHHHhccc
Q psy4351 32 PDQLRFSYQAIIEGIHTDWE 51 (62)
Q Consensus 32 ~~QY~Fiy~~i~~~~~~~~~ 51 (62)
.-||.|+...++...-...+
T Consensus 4 k~qylfl~hlllpcnisagr 23 (26)
T PRK14745 4 KFQYLFLWHLLLPCIVSAGR 23 (26)
T ss_pred HHHHHHHHHHHhhccccccc
Confidence 46999988777766554443
No 30
>KOG0826|consensus
Probab=34.85 E-value=13 Score=26.79 Aligned_cols=23 Identities=13% Similarity=0.104 Sum_probs=18.5
Q ss_pred ccCChHHHHHHHHHHHHHHHhcc
Q psy4351 28 LIQTPDQLRFSYQAIIEGIHTDW 50 (62)
Q Consensus 28 mVqt~~QY~Fiy~~i~~~~~~~~ 50 (62)
.|=+...|.|||.|+..|+....
T Consensus 314 tvl~vSGyVfCY~Ci~~Yv~~~~ 336 (357)
T KOG0826|consen 314 TVLEVSGYVFCYPCIFSYVVNYG 336 (357)
T ss_pred ceEEecceEEeHHHHHHHHHhcC
Confidence 45556899999999999988544
No 31
>PRK12361 hypothetical protein; Provisional
Probab=31.87 E-value=60 Score=23.80 Aligned_cols=29 Identities=24% Similarity=0.323 Sum_probs=24.8
Q ss_pred cCCHHHHHHHHHhcCccccCChHHHHHHH
Q psy4351 11 NVSVQEILLEMRHYRMGLIQTPDQLRFSY 39 (62)
Q Consensus 11 ~vdi~~~V~~lR~qR~~mVqt~~QY~Fiy 39 (62)
..++.+.+..+|+.||....+..|...+-
T Consensus 203 ~~~~~eA~~~vr~~Rp~v~~n~~q~~~l~ 231 (547)
T PRK12361 203 DLTVEEVLQQIKQIRKTARLNKRQLRALE 231 (547)
T ss_pred CCCHHHHHHHHHHHCCCCCCCHHHHHHHH
Confidence 47889999999999999999998887543
No 32
>TIGR03475 tap_IncFII_lead RepA leader peptide Tap. This protein is a translated leader peptide that actis in the regulation of the expression of the plasmid replication protein RepA in incF2 group plasmids.
Probab=25.50 E-value=82 Score=14.31 Aligned_cols=17 Identities=12% Similarity=0.022 Sum_probs=12.0
Q ss_pred hHHHHHHHHHHHHHHHh
Q psy4351 32 PDQLRFSYQAIIEGIHT 48 (62)
Q Consensus 32 ~~QY~Fiy~~i~~~~~~ 48 (62)
..||.|+...++...-.
T Consensus 4 KvQ~~FLc~~LL~cniS 20 (26)
T TIGR03475 4 KVQYLFLCHLLLPCNIS 20 (26)
T ss_pred hHHHHHHHHHHhhhccc
Confidence 47999988876665443
No 33
>PF08048 RepA1_leader: Tap RepA1 leader peptide; InterPro: IPR012605 This entry represents of the RepA1 leader peptide known as Tap found in IncFII plasmids. The frequency of replication of IncFII plasmid NR1 during the cell division cycle is regulated by the control of the synthesis of the plasmid-specific replication initiation protein (RepA1). When RepA1 is synthesised, it binds to the plasmid replication origin (ori) and effects the assembly of a replication complex composed of host proteins that mediate the replication of the plasmid [, ]. The tap gene encodes a 24-amino acid peptide whose translation is required for the translation of repA.
Probab=25.41 E-value=81 Score=14.21 Aligned_cols=16 Identities=13% Similarity=-0.008 Sum_probs=11.7
Q ss_pred hHHHHHHHHHHHHHHH
Q psy4351 32 PDQLRFSYQAIIEGIH 47 (62)
Q Consensus 32 ~~QY~Fiy~~i~~~~~ 47 (62)
.-||.|+...++...-
T Consensus 4 K~Q~~FLc~lLL~Cni 19 (25)
T PF08048_consen 4 KVQYLFLCHLLLPCNI 19 (25)
T ss_pred hHHHHHHHHHHhhhhc
Confidence 4699998888776443
No 34
>PRK14746 RepA leader peptide Tap; Provisional
Probab=22.76 E-value=56 Score=14.84 Aligned_cols=9 Identities=11% Similarity=-0.101 Sum_probs=6.3
Q ss_pred hHHHHHHHH
Q psy4351 32 PDQLRFSYQ 40 (62)
Q Consensus 32 ~~QY~Fiy~ 40 (62)
.-||.||+-
T Consensus 4 K~Q~l~~~l 12 (26)
T PRK14746 4 KVQYLLRLL 12 (26)
T ss_pred HHHHHHHHH
Confidence 468988663
No 35
>PF10831 DUF2556: Protein of unknown function (DUF2556); InterPro: IPR022540 This family of proteins with unknown function appears to be restricted to Enterobacteriaceae.
Probab=22.58 E-value=1e+02 Score=16.21 Aligned_cols=24 Identities=17% Similarity=0.292 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHhccccchhhhh
Q psy4351 35 LRFSYQAIIEGIHTDWETDDELCL 58 (62)
Q Consensus 35 Y~Fiy~~i~~~~~~~~~~~~~~~~ 58 (62)
+.|++++++-.....+.++.+-|-
T Consensus 14 ~~flfd~limQwiEl~tte~dkCR 37 (53)
T PF10831_consen 14 FVFLFDTLIMQWIELITTESDKCR 37 (53)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHhc
Confidence 568888877766666777777664
Done!