RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy4351
         (62 letters)



>gnl|CDD|214550 smart00194, PTPc, Protein tyrosine phosphatase, catalytic domain. 
          Length = 259

 Score = 48.0 bits (115), Expect = 1e-08
 Identities = 16/44 (36%), Positives = 28/44 (63%), Gaps = 2/44 (4%)

Query: 1   MHKISDGEINNVSVQEILLEMRHYRMGLIQTPDQLRFSYQAIIE 44
           + ++  G+   V + EI+ E+R  R G++QT +Q  F Y+AI+E
Sbjct: 218 LQQLEAGK--EVDIFEIVKELRSQRPGMVQTEEQYIFLYRAILE 259


>gnl|CDD|238006 cd00047, PTPc, Protein tyrosine phosphatases (PTP) catalyze the
           dephosphorylation of phosphotyrosine peptides; they
           regulate phosphotyrosine levels in signal transduction
           pathways. The depth of the active site cleft renders the
           enzyme specific for phosphorylated Tyr (pTyr) residues,
           instead of pSer or pThr. This family has a distinctive
           active site signature motif, HCSAGxGRxG. Characterized
           as either transmembrane, receptor-like or
           non-transmembrane (soluble) PTPs. Receptor-like PTP
           domains tend to occur in two copies in the cytoplasmic
           region of the transmembrane proteins, only one copy may
           be active.
          Length = 231

 Score = 46.8 bits (112), Expect = 4e-08
 Identities = 13/35 (37%), Positives = 22/35 (62%)

Query: 10  NNVSVQEILLEMRHYRMGLIQTPDQLRFSYQAIIE 44
             V + + + E+R  R G++QT +Q  F Y+AI+E
Sbjct: 197 GVVDIFQTVKELRSQRPGMVQTEEQYIFLYRAILE 231


>gnl|CDD|215717 pfam00102, Y_phosphatase, Protein-tyrosine phosphatase. 
          Length = 233

 Score = 45.0 bits (107), Expect = 2e-07
 Identities = 14/33 (42%), Positives = 22/33 (66%)

Query: 12  VSVQEILLEMRHYRMGLIQTPDQLRFSYQAIIE 44
           V V +I+ E+R  R G++QT +Q  F Y A++E
Sbjct: 201 VDVFQIVKELRSQRPGMVQTEEQYIFLYDAVLE 233


>gnl|CDD|214649 smart00404, PTPc_motif, Protein tyrosine phosphatase, catalytic
           domain motif. 
          Length = 105

 Score = 42.3 bits (100), Expect = 5e-07
 Identities = 13/37 (35%), Positives = 23/37 (62%)

Query: 8   EINNVSVQEILLEMRHYRMGLIQTPDQLRFSYQAIIE 44
           E   V + + + E+R  R G++QT +Q  F Y+A++E
Sbjct: 69  EAGEVDIFDTVKELRSQRPGMVQTEEQYLFLYRALLE 105


>gnl|CDD|214469 smart00012, PTPc_DSPc, Protein tyrosine phosphatase, catalytic
           domain, undefined specificity.  Protein tyrosine
           phosphatases. Homologues detected by this profile and
           not by those of "PTPc" or "DSPc" are predicted to be
           protein phosphatases with a similar fold to DSPs and
           PTPs, yet with unpredicted specificities.
          Length = 105

 Score = 42.3 bits (100), Expect = 5e-07
 Identities = 13/37 (35%), Positives = 23/37 (62%)

Query: 8   EINNVSVQEILLEMRHYRMGLIQTPDQLRFSYQAIIE 44
           E   V + + + E+R  R G++QT +Q  F Y+A++E
Sbjct: 69  EAGEVDIFDTVKELRSQRPGMVQTEEQYLFLYRALLE 105


>gnl|CDD|227886 COG5599, PTP2, Protein tyrosine phosphatase [Signal transduction
           mechanisms].
          Length = 302

 Score = 29.8 bits (67), Expect = 0.055
 Identities = 11/28 (39%), Positives = 17/28 (60%)

Query: 17  ILLEMRHYRMGLIQTPDQLRFSYQAIIE 44
           I+L +R  RM ++Q   Q +F Y A +E
Sbjct: 265 IVLSLRSQRMKMVQNKTQFKFLYDAFLE 292


>gnl|CDD|165113 PHA02746, PHA02746, protein tyrosine phosphatase; Provisional.
          Length = 323

 Score = 25.4 bits (55), Expect = 2.2
 Identities = 11/31 (35%), Positives = 19/31 (61%)

Query: 12  VSVQEILLEMRHYRMGLIQTPDQLRFSYQAI 42
           V + EI+L++R  R   +  P+Q  F Y+A+
Sbjct: 280 VCLGEIVLKIRKQRHSSVFLPEQYAFCYKAL 310


>gnl|CDD|233979 TIGR02710, TIGR02710, CRISPR-associated protein, TIGR02710
          family.  Members of this family are found, exclusively
          in the vicinity of CRISPR repeats and other
          CRISPR-associated (cas) genes, in Methanothermobacter
          thermautotrophicus (Archaea), Thermus thermophilus
          (Deinococcus-Thermus), Chloroflexus aurantiacus
          (Chloroflexi), and Thermomicrobium roseum
          (Thermomicrobia) [Mobile and extrachromosomal element
          functions, Other].
          Length = 380

 Score = 24.5 bits (53), Expect = 4.1
 Identities = 11/42 (26%), Positives = 17/42 (40%)

Query: 19 LEMRHYRMGLIQTPDQLRFSYQAIIEGIHTDWETDDELCLAD 60
           +   Y+   ++  DQL   YQ + E         D+  LAD
Sbjct: 36 KDPPEYKTIELEDIDQLYRGYQELFEAFEDLMRYGDQEILAD 77


>gnl|CDD|236707 PRK10522, PRK10522, multidrug transporter membrane
           component/ATP-binding component; Provisional.
          Length = 547

 Score = 24.5 bits (54), Expect = 4.3
 Identities = 11/36 (30%), Positives = 16/36 (44%), Gaps = 4/36 (11%)

Query: 10  NNVSVQEILLEMRHYRMGLIQTPDQLRFSYQAIIEG 45
             V V  +   M   R    +T D+L   YQ ++EG
Sbjct: 164 GFVLVARVYKHMATLR----ETEDKLYNDYQTVLEG 195


>gnl|CDD|227440 COG5109, COG5109, Uncharacterized conserved protein, contains RING
           Zn-finger [General function prediction only].
          Length = 396

 Score = 23.8 bits (51), Expect = 7.2
 Identities = 7/18 (38%), Positives = 9/18 (50%)

Query: 39  YQAIIEGIHTDWETDDEL 56
             +I+   H DW  D EL
Sbjct: 304 SGSILFDKHVDWTDDSEL 321


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.320    0.137    0.406 

Gapped
Lambda     K      H
   0.267   0.0705    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 3,271,415
Number of extensions: 236055
Number of successful extensions: 203
Number of sequences better than 10.0: 1
Number of HSP's gapped: 203
Number of HSP's successfully gapped: 11
Length of query: 62
Length of database: 10,937,602
Length adjustment: 33
Effective length of query: 29
Effective length of database: 9,473,920
Effective search space: 274743680
Effective search space used: 274743680
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (24.2 bits)