RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy4351
(62 letters)
>3m4u_A Tyrosine specific protein phosphatase, putative; protein tyrosine
phosphatase, hydrolase; 2.39A {Trypanosoma brucei}
Length = 306
Score = 58.5 bits (142), Expect = 2e-12
Identities = 11/49 (22%), Positives = 23/49 (46%)
Query: 1 MHKISDGEINNVSVQEILLEMRHYRMGLIQTPDQLRFSYQAIIEGIHTD 49
+ I G + + +V I+ M+ R G++Q +Q Y ++ + D
Sbjct: 246 LLHIERGILTDSTVYSIVAAMKQKRFGMVQRLEQYAVIYMTVLGRLGVD 294
>2cm2_A Tyrosine-protein phosphatase non-receptor type 1; polymorphism,
phosphorylation, endoplasmic reticulum, oxidation,
hydrolase, acetylation; 1.5A {Homo sapiens} SCOP:
c.45.1.2 PDB: 2cm3_A 2cmb_A* 2cmc_A* 2cne_A* 3a5j_A
2cma_A 3a5k_A 3eu0_A 3sme_A 2azr_A* 2b07_A* 2h4g_A*
2h4k_A* 2hb1_A* 2qbp_A* 2qbq_A* 2qbr_A* 2qbs_A* 2zmm_A*
2zn7_A* ...
Length = 304
Score = 58.0 bits (141), Expect = 3e-12
Identities = 24/39 (61%), Positives = 32/39 (82%)
Query: 10 NNVSVQEILLEMRHYRMGLIQTPDQLRFSYQAIIEGIHT 48
++V ++++LLEMR +RMGLIQT DQLRFSY A+IEG
Sbjct: 248 SSVDIKKVLLEMRKFRMGLIQTADQLRFSYLAVIEGAKF 286
>1l8k_A T-cell protein-tyrosine phosphatase; hydrolase; 2.56A {Homo
sapiens} SCOP: c.45.1.2
Length = 314
Score = 57.7 bits (140), Expect = 4e-12
Identities = 25/39 (64%), Positives = 33/39 (84%)
Query: 10 NNVSVQEILLEMRHYRMGLIQTPDQLRFSYQAIIEGIHT 48
++++++++LL MR YRMGLIQTPDQLRFSY AIIEG
Sbjct: 240 DDINIKQVLLNMRKYRMGLIQTPDQLRFSYMAIIEGAKC 278
>2shp_A SHP-2, SYP, SHPTP-2; tyrosine phosphatase, insulin signaling, SH2
protein; HET: CAT; 2.00A {Homo sapiens} SCOP: c.45.1.2
d.93.1.1 d.93.1.1
Length = 525
Score = 57.6 bits (139), Expect = 5e-12
Identities = 13/42 (30%), Positives = 21/42 (50%)
Query: 7 GEINNVSVQEILLEMRHYRMGLIQTPDQLRFSYQAIIEGIHT 48
G ++ V + + +R R G++QT Q R Y A+ I T
Sbjct: 483 GVDCDIDVPKTIQMVRSQRSGMVQTEAQYRSIYMAVQHYIET 524
>3ps5_A Tyrosine-protein phosphatase non-receptor type 6; SH2, PTP,
hydrolase, signaling protein; 3.10A {Homo sapiens}
Length = 595
Score = 56.9 bits (137), Expect = 9e-12
Identities = 14/42 (33%), Positives = 24/42 (57%)
Query: 7 GEINNVSVQEILLEMRHYRMGLIQTPDQLRFSYQAIIEGIHT 48
G ++ +Q+ + +R R G++QT Q +F Y AI + I T
Sbjct: 477 GLDCDIDIQKTIQMVRAQRSGMVQTEAQYKFIYVAIAQFIET 518
>2pa5_A Tyrosine-protein phosphatase non-receptor type 9; protein tyrosine
phosphatase, MEG2, PTPN9, structural genomi structural
genomics consortium, SGC; 1.60A {Homo sapiens}
Length = 314
Score = 56.5 bits (137), Expect = 1e-11
Identities = 14/40 (35%), Positives = 22/40 (55%)
Query: 10 NNVSVQEILLEMRHYRMGLIQTPDQLRFSYQAIIEGIHTD 49
++V + + MR R IQTP+Q F Y+AI+E +
Sbjct: 264 GTLNVFQTVSRMRTQRAFSIQTPEQYYFCYKAILEFAEKE 303
>3b7o_A Tyrosine-protein phosphatase non-receptor type 11; SHP2, PTPN11,
tyrosine phosphatase, structural genomics, STR genomics
consortium, SGC, deafness; 1.60A {Homo sapiens} PDB:
3jrl_A* 3mow_A* 3o5x_A*
Length = 316
Score = 56.2 bits (136), Expect = 1e-11
Identities = 14/42 (33%), Positives = 22/42 (52%)
Query: 7 GEINNVSVQEILLEMRHYRMGLIQTPDQLRFSYQAIIEGIHT 48
G ++ V + + +R R G++QT Q RF Y A+ I T
Sbjct: 270 GVDCDIDVPKTIQMVRSQRSGMVQTEAQYRFIYMAVQHYIET 311
>2oc3_A Tyrosine-protein phosphatase non-receptor type 18; protein tyrosine
phosphatase, human, structural genomics, structural
genomics consortium, SGC; 1.50A {Homo sapiens}
Length = 303
Score = 56.1 bits (136), Expect = 1e-11
Identities = 11/43 (25%), Positives = 22/43 (51%)
Query: 6 DGEINNVSVQEILLEMRHYRMGLIQTPDQLRFSYQAIIEGIHT 48
+ S+ +++L+MR R +QT +Q RF Y + + +
Sbjct: 256 QMIPPDFSLFDVVLKMRKQRPAAVQTEEQYRFLYHTVAQMFCS 298
>1fpr_A Protein-tyrosine phosphatase 1C; protein tyrosine phosphatase,
substrate specificity, residue shift, signaling protein;
HET: PTR; 2.50A {Homo sapiens} SCOP: c.45.1.2 PDB:
1gwz_A
Length = 284
Score = 56.1 bits (136), Expect = 1e-11
Identities = 14/42 (33%), Positives = 24/42 (57%)
Query: 7 GEINNVSVQEILLEMRHYRMGLIQTPDQLRFSYQAIIEGIHT 48
G ++ +Q+ + +R R G++QT Q +F Y AI + I T
Sbjct: 235 GLDCDIDIQKTIQMVRAQRSGMVQTEAQYKFIYVAIAQFIET 276
>2i1y_A Receptor-type tyrosine-protein phosphatase; receptor-type protein
tyrosine phosphatase precursor, phosph structural
genomics, PSI; 2.23A {Homo sapiens} PDB: 2qep_A
Length = 301
Score = 56.1 bits (136), Expect = 1e-11
Identities = 11/48 (22%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Query: 1 MHKISDGEINNVSVQEILLEMRHYRMGLIQTPDQLRFSYQAIIEGIHT 48
+++++ G + + L +R R GL+++ DQ F+ A+ E ++
Sbjct: 248 LNRMAKGV-KEIDIAATLEHVRDQRPGLVRSKDQFEFALTAVAEEVNA 294
>2i75_A Tyrosine-protein phosphatase non-receptor type 4; PTPN4, PTP,
tyrosine phosphatase, MEG-1, structural genomics
structural genomics consortium, SGC; 2.45A {Homo
sapiens}
Length = 320
Score = 55.8 bits (135), Expect = 2e-11
Identities = 14/37 (37%), Positives = 20/37 (54%)
Query: 10 NNVSVQEILLEMRHYRMGLIQTPDQLRFSYQAIIEGI 46
V +I+ MR R +IQTP Q RF +AI++
Sbjct: 268 QPVYPLDIVRTMRDQRAMMIQTPSQYRFVCEAILKVY 304
>2b3o_A Tyrosine-protein phosphatase, non-receptor type 6; protein tyrosine
phosphatase, SHP-1, signaling, hydrolase; 2.80A {Homo
sapiens} PDB: 1x6c_A 2rmx_A* 2yu7_A*
Length = 532
Score = 56.0 bits (135), Expect = 2e-11
Identities = 14/42 (33%), Positives = 24/42 (57%)
Query: 7 GEINNVSVQEILLEMRHYRMGLIQTPDQLRFSYQAIIEGIHT 48
G ++ +Q+ + +R R G++QT Q +F Y AI + I T
Sbjct: 477 GLDCDIDIQKTIQMVRAQRSGMVQTEAQYKFIYVAIAQFIET 518
>2b49_A Protein tyrosine phosphatase, non-receptor type 3; human, STRU
genomics, structural genomics consortium, SGC,
hydrolase; 1.54A {Homo sapiens}
Length = 287
Score = 55.7 bits (135), Expect = 2e-11
Identities = 10/37 (27%), Positives = 19/37 (51%)
Query: 10 NNVSVQEILLEMRHYRMGLIQTPDQLRFSYQAIIEGI 46
+ +I+ +MR R ++QT Q +F +AI+
Sbjct: 240 LPIYPLDIVRKMRDQRAMMVQTSSQYKFVCEAILRVY 276
>3i36_A Vascular protein tyrosine phosphatase 1; PTP, hydrolase; 1.84A
{Rattus norvegicus} PDB: 2nz6_A 2cfv_A
Length = 342
Score = 55.0 bits (133), Expect = 3e-11
Identities = 13/39 (33%), Positives = 22/39 (56%)
Query: 10 NNVSVQEILLEMRHYRMGLIQTPDQLRFSYQAIIEGIHT 48
N V V I+ ++R +R ++QT DQ F Q +++ I
Sbjct: 268 NTVDVYGIVYDLRMHRPLMVQTEDQYVFLNQCVLDIIRA 306
>1wch_A Protein tyrosine phosphatase, non-receptor type 13; hydrolase,
phosphate ION, colorectal cancer alternative splicing,
coiled coil, cytoskeleton; 1.85A {Homo sapiens} SCOP:
c.45.1.2
Length = 315
Score = 54.6 bits (132), Expect = 4e-11
Identities = 12/37 (32%), Positives = 21/37 (56%)
Query: 10 NNVSVQEILLEMRHYRMGLIQTPDQLRFSYQAIIEGI 46
+ + +++ MR R G++QT DQ F YQ I+ +
Sbjct: 270 LDFDISDLVRCMRLQRHGMVQTEDQYIFCYQVILYVL 306
>2bzl_A Tyrosine-protein phosphatase, non-receptor type 14; PTPN14,
hydrolase; 1.65A {Homo sapiens}
Length = 325
Score = 54.6 bits (132), Expect = 5e-11
Identities = 14/37 (37%), Positives = 21/37 (56%)
Query: 10 NNVSVQEILLEMRHYRMGLIQTPDQLRFSYQAIIEGI 46
V V +L +R RM +IQT Q +F YQ +I+ +
Sbjct: 283 EKVEVPMMLRLLREQRMFMIQTIAQYKFVYQVLIQFL 319
>2hc1_A Receptor-type tyrosine-protein phosphatase beta; protein tyrosine
phosphatase, WPD-loop, sulfamic acid, inhibitor, drug
design, hydrolase; 1.30A {Homo sapiens} PDB: 2h03_A
2hc2_A 2i4g_A* 2h04_A* 2h02_A 2i3u_A 2i3r_A 2i4e_A*
2i4h_A* 2i5x_A* 2ahs_A
Length = 291
Score = 53.8 bits (130), Expect = 7e-11
Identities = 7/39 (17%), Positives = 22/39 (56%)
Query: 10 NNVSVQEILLEMRHYRMGLIQTPDQLRFSYQAIIEGIHT 48
++V + + ++R +R+ ++QT Q + +Q + + +
Sbjct: 249 DSVDIYGAVHDLRLHRVHMVQTECQYVYLHQCVRDVLRA 287
>2h4v_A Receptor-type tyrosine-protein phosphatase gamma; tyrosine receptor
phosphatase, human, structural GENO structural genomics
consortium, SGC; HET: FLC; 1.55A {Homo sapiens} PDB:
3qcd_A 3qcc_A 3qcb_A 3qce_A* 3qcf_A* 3qcg_A* 3qch_A*
3qci_A* 3qcj_A* 3qck_A* 2pbn_A 2hy3_A 3qcm_A* 3qcl_A*
3qcn_A
Length = 320
Score = 53.8 bits (130), Expect = 9e-11
Identities = 13/37 (35%), Positives = 21/37 (56%)
Query: 10 NNVSVQEILLEMRHYRMGLIQTPDQLRFSYQAIIEGI 46
+ V+V L +R R L+QT +Q F + A++E I
Sbjct: 277 STVNVLGFLKHIRTQRNYLVQTEEQYIFIHDALLEAI 313
>2p6x_A Tyrosine-protein phosphatase non-receptor type 22; tyrosine
phosphatase, lymphoid phosphatase, PEP, LYP, struct
genomics; 1.90A {Homo sapiens} PDB: 3h2x_A 3brh_A
2qct_A* 2qcj_A* 3olr_A* 3omh_A*
Length = 309
Score = 53.8 bits (130), Expect = 9e-11
Identities = 14/37 (37%), Positives = 20/37 (54%)
Query: 10 NNVSVQEILLEMRHYRMGLIQTPDQLRFSYQAIIEGI 46
N SV ++ EMR R L+QT +Q Y A++E
Sbjct: 254 ENFSVFSLIREMRTQRPSLVQTQEQYELVYNAVLELF 290
>1lar_A Protein (LAR); tyrosine phosphatease, LAR protein, hydrolase; 2.00A
{Homo sapiens} SCOP: c.45.1.2 c.45.1.2 PDB: 2fh7_A
2nv5_A
Length = 575
Score = 53.5 bits (129), Expect = 1e-10
Identities = 11/41 (26%), Positives = 19/41 (46%)
Query: 10 NNVSVQEILLEMRHYRMGLIQTPDQLRFSYQAIIEGIHTDW 50
V + + MR R ++QT DQ F ++A++E
Sbjct: 240 KTVDIYGHVTCMRSQRNYMVQTEDQYVFIHEALLEAATCGH 280
Score = 49.7 bits (119), Expect = 3e-09
Identities = 10/39 (25%), Positives = 21/39 (53%)
Query: 10 NNVSVQEILLEMRHYRMGLIQTPDQLRFSYQAIIEGIHT 48
V + + + +R R ++QT DQ + Y+A +E + +
Sbjct: 531 GVVDMFQTVKTLRTQRPAMVQTEDQYQLCYRAALEYLGS 569
>2ooq_A Receptor-type tyrosine-protein phosphatase T; protein tyrosine
phosphatase, human, structural GE structural genomics
consortium, SGC, hydrolase; HET: B3P; 1.80A {Homo
sapiens} PDB: 1rpm_A 2c7s_A
Length = 286
Score = 53.0 bits (128), Expect = 1e-10
Identities = 12/35 (34%), Positives = 20/35 (57%)
Query: 12 VSVQEILLEMRHYRMGLIQTPDQLRFSYQAIIEGI 46
V + + E+R R+ L+QT +Q F + AI+E
Sbjct: 245 VDIFNCVRELRAQRVNLVQTEEQYVFVHDAILEAC 279
>2nlk_A Protein tyrosine phosphatase, receptor type, G VA (fragment);
PTPRG, R-PTP gamma, protein tyrosine phosphatase gamma,
D3S1 HPTPG, RPTPG, PTPG; 2.40A {Homo sapiens}
Length = 627
Score = 53.2 bits (128), Expect = 2e-10
Identities = 13/41 (31%), Positives = 21/41 (51%)
Query: 10 NNVSVQEILLEMRHYRMGLIQTPDQLRFSYQAIIEGIHTDW 50
+ V+V L +R R L+QT +Q F + A++E I
Sbjct: 259 STVNVLGFLKHIRTQRNYLVQTEEQYIFIHDALLEAILGKE 299
Score = 50.5 bits (121), Expect = 2e-09
Identities = 10/39 (25%), Positives = 20/39 (51%)
Query: 10 NNVSVQEILLEMRHYRMGLIQTPDQLRFSYQAIIEGIHT 48
N V V ++ + R G+ +Q +F Y+A++ + T
Sbjct: 550 NAVDVFQVAKMINLMRPGVFTDIEQYQFIYKAMLSLVST 588
>1p15_A Protein-tyrosine phosphatase alpha; transmembrane, hydrolase,
phosphorylation; 2.00A {Mus musculus} SCOP: c.45.1.2
Length = 253
Score = 52.6 bits (127), Expect = 2e-10
Identities = 10/37 (27%), Positives = 19/37 (51%)
Query: 12 VSVQEILLEMRHYRMGLIQTPDQLRFSYQAIIEGIHT 48
+ V + + +R R ++QT +Q F Y+ + E I
Sbjct: 209 LDVFQTVKSLRLQRPHMVQTLEQYEFCYKVVQEYIDA 245
>2gjt_A Receptor-type tyrosine-protein phosphatase PTPro; tyrosine
phosphatase, glepp1, PTPU2, structural genom structural
genomics consortium, SGC; 2.15A {Homo sapiens} PDB:
2g59_A 2pi7_A
Length = 295
Score = 52.6 bits (127), Expect = 2e-10
Identities = 12/35 (34%), Positives = 20/35 (57%)
Query: 10 NNVSVQEILLEMRHYRMGLIQTPDQLRFSYQAIIE 44
V + ++ EMR YRM ++QT +Q F +Q +
Sbjct: 247 EFVDILGLVSEMRSYRMSMVQTEEQYIFIHQCVQL 281
>1yfo_A D1, receptor protein tyrosine phosphatase alpha; hydrolase, signal
transduction, glycoprotein, phosphorylation, signal;
2.25A {Mus musculus} SCOP: c.45.1.2
Length = 302
Score = 52.6 bits (127), Expect = 2e-10
Identities = 12/37 (32%), Positives = 18/37 (48%)
Query: 10 NNVSVQEILLEMRHYRMGLIQTPDQLRFSYQAIIEGI 46
V V + +R R ++QT Q F YQA++E
Sbjct: 256 RKVDVYGFVSRIRAQRCQMVQTDMQYVFIYQALLEHY 292
>3s3e_A Tyrosine-protein phosphatase 10D; differentiation, neurogenesis,
signal transduction, developm protein, hydrolase; 2.40A
{Drosophila melanogaster} PDB: 3s3f_A 3s3h_A* 3s3k_A*
Length = 307
Score = 52.3 bits (126), Expect = 3e-10
Identities = 9/37 (24%), Positives = 19/37 (51%)
Query: 10 NNVSVQEILLEMRHYRMGLIQTPDQLRFSYQAIIEGI 46
+ V + I+ MR R+ ++QT Q +Q ++ +
Sbjct: 266 DYVDIFGIVYAMRKERVWMVQTEQQYICIHQCLLAVL 302
>1zc0_A Tyrosine-protein phosphatase, non-receptor type 7; heptp, human
tyrosine phosphatase catalytic domain, LC-PTP,
hydrolase; 1.85A {Homo sapiens} PDB: 2gp0_A 2qdc_A
2hvl_A 2qdp_A 2qdm_A 3o4s_A 3o4t_A* 3o4u_A* 3d44_A*
3d42_A* 2a3k_A
Length = 309
Score = 50.8 bits (122), Expect = 1e-09
Identities = 10/39 (25%), Positives = 19/39 (48%)
Query: 10 NNVSVQEILLEMRHYRMGLIQTPDQLRFSYQAIIEGIHT 48
V + I+ ++R R G+IQT +Q +F + +
Sbjct: 264 GEVDILGIVCQLRLDRGGMIQTAEQYQFLHHTLALYAGQ 302
>1jln_A STEP-like ptpase, protein tyrosine phosphatase, receptor type, R;
PTP-SL, PTPBR7, ERK2-MAP kinase regulation, hydrolase;
1.81A {Mus musculus} SCOP: c.45.1.2 PDB: 2a8b_A
Length = 297
Score = 50.0 bits (120), Expect = 2e-09
Identities = 10/35 (28%), Positives = 18/35 (51%)
Query: 10 NNVSVQEILLEMRHYRMGLIQTPDQLRFSYQAIIE 44
V I+ ++R R G++QT +Q F + A+
Sbjct: 253 GVVDALSIVCQLRVDRGGMVQTSEQYEFVHHALCL 287
>2jjd_A Receptor-type tyrosine-protein phosphatase epsilo; transmembrane,
phosphoprotein, consorti structural, glycoprotein, SGC,
PTPRE, membrane genomics; 3.20A {Homo sapiens}
Length = 599
Score = 49.7 bits (119), Expect = 3e-09
Identities = 9/39 (23%), Positives = 19/39 (48%)
Query: 10 NNVSVQEILLEMRHYRMGLIQTPDQLRFSYQAIIEGIHT 48
+ V + + +R R ++QT +Q F Y+ + + I
Sbjct: 549 GLLDVFQAVKSLRLQRPHMVQTLEQYEFCYKVVQDFIDI 587
Score = 47.7 bits (114), Expect = 1e-08
Identities = 13/41 (31%), Positives = 20/41 (48%)
Query: 10 NNVSVQEILLEMRHYRMGLIQTPDQLRFSYQAIIEGIHTDW 50
V V E + +R+ R ++QT Q F YQA++E
Sbjct: 254 QKVDVFEFVSRIRNQRPQMVQTDMQYTFIYQALLEYYLYGD 294
>2cjz_A Human protein tyrosine phosphatase PTPN5; protein phosphatase,
STEP, hydrolase; HET: PTR; 1.70A {Homo sapiens} PDB:
2bij_A 2bv5_A*
Length = 305
Score = 48.9 bits (117), Expect = 5e-09
Identities = 9/37 (24%), Positives = 18/37 (48%)
Query: 10 NNVSVQEILLEMRHYRMGLIQTPDQLRFSYQAIIEGI 46
V + + ++R R G+IQT +Q +F + +
Sbjct: 262 GVVDILKTTCQLRQDRGGMIQTCEQYQFVHHVMSLYE 298
>1ygr_A CD45 protein tyrosine phosphatase; protein tyrosine phosphatase,
RPTP, LCA, lymphocyte activation, hydrolase; HET: PTR;
2.90A {Homo sapiens} PDB: 1ygu_A*
Length = 610
Score = 48.2 bits (115), Expect = 9e-09
Identities = 10/41 (24%), Positives = 19/41 (46%)
Query: 10 NNVSVQEILLEMRHYRMGLIQTPDQLRFSYQAIIEGIHTDW 50
N V V ++++R R ++Q Q +QA++E
Sbjct: 254 NKVDVYGYVVKLRRQRCLMVQVEAQYILIHQALVEYNQFGE 294
Score = 47.4 bits (113), Expect = 2e-08
Identities = 9/39 (23%), Positives = 19/39 (48%)
Query: 10 NNVSVQEILLEMRHYRMGLIQTPDQLRFSYQAIIEGIHT 48
V + +++ +R R+G++ T +Q +F Y I
Sbjct: 570 EVVDIFQVVKALRKARLGMVSTFEQYQFLYDVIASTYPA 608
>1g4w_R Protein tyrosine phosphatase SPTP; virulence factor, GTPase
activating protein, 4-helix bundle, disorder, signaling
protein; 2.20A {Salmonella typhimurium} SCOP: a.24.11.1
c.45.1.2 PDB: 1g4u_S
Length = 383
Score = 45.6 bits (108), Expect = 8e-08
Identities = 4/40 (10%), Positives = 15/40 (37%), Gaps = 1/40 (2%)
Query: 10 NNVSVQEILLEMRHYRMGL-IQTPDQLRFSYQAIIEGIHT 48
+ +++++ + R R ++ Q + + T
Sbjct: 341 PHSNLEQVRADFRDSRNNRMLEDASQFVQLKAMQAQLLMT 380
>1lyv_A Protein-tyrosine phosphatase YOPH; toxin, hydrolase; 1.36A
{Yersinia enterocolitica} SCOP: c.45.1.2 PDB: 1qz0_A*
1ytn_A 1ytw_A 2i42_A 2y2f_A* 2ydu_A* 1xxp_A* 3blu_A*
1ypt_A* 3blt_A* 1xxv_A* 3f9b_A 3f9a_A 3f99_A 3bm8_A*
1pa9_A* 1yts_A
Length = 306
Score = 44.3 bits (105), Expect = 2e-07
Identities = 9/36 (25%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Query: 10 NNVSVQEILLEMRHYRMG-LIQTPDQLRFSYQAIIE 44
+ +SV++++ +MR R G ++Q +QL +
Sbjct: 263 SQLSVEDMVSQMRVQRNGIMVQKDEQLDVLIKLAEG 298
>2i6j_A Ssoptp, sulfolobus solfataricus protein tyrosine phosphatase; PTP
domain, hydrolase; 1.66A {Sulfolobus solfataricus} PDB:
2i6i_A 2i6m_A 3ro1_A* 2i6o_A* 2dxp_A* 2i6p_A*
Length = 161
Score = 31.0 bits (70), Expect = 0.010
Identities = 9/30 (30%), Positives = 16/30 (53%)
Query: 11 NVSVQEILLEMRHYRMGLIQTPDQLRFSYQ 40
+ V+ + E+R R G +QT +Q F +
Sbjct: 116 GLEVESAIDEVRLVRPGAVQTYEQEMFLLR 145
>2img_A Dual specificity protein phosphatase 23; DUSP23, VHZ, LDP-3, dual
specicity protein phosphatase 23, DUS23_human, malate,
structural genomics, PSI; 1.93A {Homo sapiens}
Length = 151
Score = 25.8 bits (57), Expect = 0.75
Identities = 7/27 (25%), Positives = 15/27 (55%)
Query: 11 NVSVQEILLEMRHYRMGLIQTPDQLRF 37
++ + + E+R R G I+T +Q +
Sbjct: 116 GLAAGDAIAEIRRLRPGSIETYEQEKA 142
>1t6a_A Rbstp2229 gene product; structural genomics, hypothetical
protein, PSI, protein structure initiative; HET: MSE;
2.05A {Geobacillus stearothermophilus} SCOP: d.129.8.1
Length = 126
Score = 24.8 bits (53), Expect = 1.8
Identities = 9/38 (23%), Positives = 24/38 (63%), Gaps = 2/38 (5%)
Query: 3 KISDGEINNVSVQEILLEMRHYRMGLIQTPDQLRFSYQ 40
K+ G+ ++++++ + Y+M L +T +QL ++Y+
Sbjct: 7 KLPAGK--TMTIEDVKQLLERYQMALKKTGEQLGWAYE 42
>1fpz_A Cyclin-dependent kinase inhibitor 3; alpha-beta sandwich,
hydrolase; 2.00A {Homo sapiens} SCOP: c.45.1.1 PDB:
1fq1_A*
Length = 212
Score = 24.3 bits (52), Expect = 3.2
Identities = 8/27 (29%), Positives = 14/27 (51%), Gaps = 1/27 (3%)
Query: 12 VSVQEILLEMRHYRM-GLIQTPDQLRF 37
+S ++ + +R R G IQT Q +
Sbjct: 162 ISPEQAIDSLRDLRGSGAIQTIKQYNY 188
>3l0q_A Xylulose kinase; xlylulose kinase, SGX, PSI, structural genomics,
protein structure initiative; HET: MSE XUL EPE; 1.61A
{Yersinia pseudotuberculosis} PDB: 3gg4_A*
Length = 554
Score = 23.8 bits (52), Expect = 4.6
Identities = 6/21 (28%), Positives = 11/21 (52%)
Query: 26 MGLIQTPDQLRFSYQAIIEGI 46
+ L TP+ + Y A I+ +
Sbjct: 405 LKLSTTPEDMALRYLATIQAL 425
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.137 0.406
Gapped
Lambda K H
0.267 0.0743 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,016,276
Number of extensions: 45481
Number of successful extensions: 136
Number of sequences better than 10.0: 1
Number of HSP's gapped: 134
Number of HSP's successfully gapped: 44
Length of query: 62
Length of database: 6,701,793
Length adjustment: 33
Effective length of query: 29
Effective length of database: 5,780,400
Effective search space: 167631600
Effective search space used: 167631600
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (23.4 bits)