BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy4354
(342 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3PBL|A Chain A, Structure Of The Human Dopamine D3 Receptor In Complex
With Eticlopride
pdb|3PBL|B Chain B, Structure Of The Human Dopamine D3 Receptor In Complex
With Eticlopride
Length = 481
Score = 89.7 bits (221), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 42/81 (51%), Positives = 53/81 (65%), Gaps = 1/81 (1%)
Query: 257 RERKAAKTLAIITGAFVICWXXXXXXXXXXXXCQTCYISDYLASFFLWLGYFNSTLNPVI 316
RE+KA + +AI+ GAF++CW CQTC++S L S WLGY NS LNPVI
Sbjct: 395 REKKATQMVAIVLGAFIVCWLPFFLTHVLNTHCQTCHVSPELYSATTWLGYVNSALNPVI 454
Query: 317 YTVFSPEFRQAFKRIL-CGSP 336
YT F+ EFR+AF +IL CG P
Sbjct: 455 YTTFNIEFRKAFLKILSCGRP 475
Score = 36.2 bits (82), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 47/96 (48%), Gaps = 16/96 (16%)
Query: 27 VDKYWAVT-NVDYIH---TRNANRIIMMIVVVWSVAFIVSLAPQLGWK---DPEYMDRIN 79
+D+Y AV V Y H + R+ +MI VW +AF VS G+ DP
Sbjct: 135 IDRYTAVVMPVHYQHGTGQSSCRRVALMITAVWVLAFAVSCPLLFGFNTTGDPTV----- 189
Query: 80 QQKCMVSQDVGYQIFATCSTFYVPLLVILVLYWKIY 115
C +S + I+++ +FY+P V +++Y +IY
Sbjct: 190 ---CSISNP-DFVIYSSVVSFYLPFGVTVLVYARIY 221
>pdb|3RZE|A Chain A, Structure Of The Human Histamine H1 Receptor In Complex
With Doxepin
Length = 452
Score = 75.5 bits (184), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 36/80 (45%), Positives = 48/80 (60%), Gaps = 1/80 (1%)
Query: 253 LEAKRERKAAKTLAIITGAFVICWXXXXXXXXXXXXCQTCYISDYLASFFLWLGYFNSTL 312
L RERKAAK L I AF++CW C+ C +++L F +WLGY NSTL
Sbjct: 363 LHMNRERKAAKQLGFIMAAFILCWIPYFIFFMVIAFCKNC-CNEHLHMFTIWLGYINSTL 421
Query: 313 NPVIYTVFSPEFRQAFKRIL 332
NP+IY + + F++ FKRIL
Sbjct: 422 NPLIYPLCNENFKKTFKRIL 441
Score = 36.6 bits (83), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 50/101 (49%), Gaps = 5/101 (4%)
Query: 20 YSTVIMFVDKYWAVTN-VDYIHTRNANRIIMMIVVVWSVAFIVSLAPQLGWKDPEYMDRI 78
+S I+ +D+Y +V + Y+ R R I+ W ++F+ + P LGW +
Sbjct: 97 FSVFILCIDRYRSVQQPLRYLKYRTKTRASATILGAWFLSFLWVI-PILGWNHFMQQTSV 155
Query: 79 NQQ-KCMVS-QDVG-YQIFATCSTFYVPLLVILVLYWKIYQ 116
++ KC DV +++ FY+P L++L Y KIY+
Sbjct: 156 RREDKCETDFYDVTWFKVMTAIINFYLPTLLMLWFYAKIYK 196
>pdb|2VT4|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Cyanopindolol
pdb|2VT4|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Cyanopindolol
pdb|2VT4|C Chain C, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Cyanopindolol
pdb|2VT4|D Chain D, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Cyanopindolol
pdb|2YCW|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Antagonist Carazolol
pdb|2YCW|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Antagonist Carazolol
pdb|2YCX|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Antagonist Cyanopindolol
pdb|2YCX|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Antagonist Cyanopindolol
pdb|2YCZ|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Antagonist Iodocyanopindolol
pdb|2YCZ|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Antagonist Iodocyanopindolol
pdb|2YCY|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Antagonist Cyanopindolol
pdb|2YCY|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Antagonist Cyanopindolol
pdb|4GPO|A Chain A, Oligomeic Turkey Beta1-adrenergic G Protein-coupled
Receptor
pdb|4GPO|B Chain B, Oligomeic Turkey Beta1-adrenergic G Protein-coupled
Receptor
Length = 313
Score = 63.9 bits (154), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 35/76 (46%), Positives = 44/76 (57%), Gaps = 2/76 (2%)
Query: 257 RERKAAKTLAIITGAFVICWXXXXXXXXXXXXCQTCYISDYLASFFLWLGYFNSTLNPVI 316
RE KA KTL II G F +CW + + D+L F WLGY NS +NP+I
Sbjct: 224 REHKALKTLGIIMGVFTLCWLPFFLVNIVNVFNRD-LVPDWLFVAFNWLGYANSAMNPII 282
Query: 317 YTVFSPEFRQAFKRIL 332
Y SP+FR+AFKR+L
Sbjct: 283 YCR-SPDFRKAFKRLL 297
Score = 37.7 bits (86), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 25/101 (24%), Positives = 53/101 (52%), Gaps = 6/101 (5%)
Query: 24 IMFVDKYWAVTN-VDYIHTRNANRIIMMIVVVWSVAFIVSLAP-QLGW---KDPEYMDRI 78
++ +D+Y A+T+ Y R ++I VW+++ +VS P + W +DP+ +
Sbjct: 104 VIAIDRYLAITSPFRYQSLMTRARAKVIICTVWAISALVSFLPIMMHWWRDEDPQALKCY 163
Query: 79 NQQKCM-VSQDVGYQIFATCSTFYVPLLVILVLYWKIYQTA 118
C + Y I ++ +FY+PLL+++ + ++Y+ A
Sbjct: 164 QDPGCCDFVTNRAYAIASSIISFYIPLLIMIFVALRVYREA 204
>pdb|2Y00|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Partial Agonist Dobutamine (Crystal
Dob92)
pdb|2Y00|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Partial Agonist Dobutamine (Crystal
Dob92)
pdb|2Y01|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Partial Agonist Dobutamine (Crystal
Dob102)
pdb|2Y01|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Partial Agonist Dobutamine (Crystal
Dob102)
pdb|2Y02|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Agonist Carmoterol
pdb|2Y02|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Agonist Carmoterol
pdb|2Y03|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Agonist Isoprenaline
pdb|2Y03|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Agonist Isoprenaline
pdb|2Y04|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Partial Agonist Salbutamol
pdb|2Y04|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Partial Agonist Salbutamol
pdb|4AMI|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Biased Agonist Bucindolol
pdb|4AMI|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Biased Agonist Bucindolol
pdb|4AMJ|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Biased Agonist Carvedilol
pdb|4AMJ|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Biased Agonist Carvedilol
Length = 315
Score = 63.5 bits (153), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 35/76 (46%), Positives = 44/76 (57%), Gaps = 2/76 (2%)
Query: 257 RERKAAKTLAIITGAFVICWXXXXXXXXXXXXCQTCYISDYLASFFLWLGYFNSTLNPVI 316
RE KA KTL II G F +CW + + D+L F WLGY NS +NP+I
Sbjct: 226 REHKALKTLGIIMGVFTLCWLPFFLVNIVNVFNRD-LVPDWLFVAFNWLGYANSAMNPII 284
Query: 317 YTVFSPEFRQAFKRIL 332
Y SP+FR+AFKR+L
Sbjct: 285 YCR-SPDFRKAFKRLL 299
Score = 37.7 bits (86), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 25/101 (24%), Positives = 53/101 (52%), Gaps = 6/101 (5%)
Query: 24 IMFVDKYWAVTN-VDYIHTRNANRIIMMIVVVWSVAFIVSLAP-QLGW---KDPEYMDRI 78
++ +D+Y A+T+ Y R ++I VW+++ +VS P + W +DP+ +
Sbjct: 104 VIAIDRYLAITSPFRYQSLMTRARAKVIICTVWAISALVSFLPIMMHWWRDEDPQALKCY 163
Query: 79 NQQKCM-VSQDVGYQIFATCSTFYVPLLVILVLYWKIYQTA 118
C + Y I ++ +FY+PLL+++ + ++Y+ A
Sbjct: 164 QDPGCCDFVTNRAYAIASSIISFYIPLLIMIFVALRVYREA 204
>pdb|4EIY|A Chain A, Crystal Structure Of The Chimeric Protein Of A2aar-Bril In
Complex With Zm241385 At 1.8a Resolution
Length = 447
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 70/327 (21%), Positives = 119/327 (36%), Gaps = 34/327 (10%)
Query: 20 YSTVIMFVDKYWAV-TNVDYIHTRNANRIIMMIVVVWSVAFIVSLAPQLGWKD---PEYM 75
+S + + +D+Y A+ + Y R +I + W ++F + L P LGW + P+
Sbjct: 118 FSLLAIAIDRYIAIRIPLRYNGLVTGTRAKGIIAICWVLSFAIGLTPMLGWNNCGQPKEG 177
Query: 76 DRINQ-----QKCMVSQDV---GYQI-FATCSTFYVPLLVILVLYWKIYQTAXXXXXXXX 126
+Q Q + +DV Y + F + VPLL++L +Y +I+ A
Sbjct: 178 KNHSQGCGEGQVACLFEDVVPMNYMVYFNFFACVLVPLLLMLGVYLRIFLAARRQLADLE 237
Query: 127 XXXNVLMAGKKPDTSDNKTSHXXXXXXXXXXXXXXCTNVVPPSPNKLSINVIDEDNGINN 186
L K + + PP KL ED
Sbjct: 238 DNWETLNDNLKVIEKADNAAQVKDALTKMRAAALDAQKATPP---KL------EDK---- 284
Query: 187 ATTSSSLILADGHSNSDADRRTSINNEANTAFTITHNNGASQSNHNNECVQVXXXXXXXX 246
+ S + D D + + + A + + ++ E ++
Sbjct: 285 --SPDSPEMKDFRHGFDI-----LVGQIDDALKLANEGKVKEAQAAAEQLKTTRNAYIQK 337
Query: 247 XXXXXSLEAKRERKAAKTLAIITGAFVICWXXXXXXXXXXXXCQTC-YISDYLASFFLWL 305
++E AAK+LAII G F +CW C C + +L + L
Sbjct: 338 YLERARSTLQKEVHAAKSLAIIVGLFALCWLPLHIINCFTFFCPDCSHAPLWLMYLAIVL 397
Query: 306 GYFNSTLNPVIYTVFSPEFRQAFKRIL 332
+ NS +NP IY EFRQ F++I+
Sbjct: 398 SHTNSVVNPFIYAYRIREFRQTFRKII 424
>pdb|3P0G|A Chain A, Structure Of A Nanobody-Stabilized Active State Of The
Beta2 Adrenoceptor
Length = 501
Score = 55.5 bits (132), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 39/77 (50%), Gaps = 2/77 (2%)
Query: 257 RERKAAKTLAIITGAFVICWXXXXXXXXXXXXCQTCYISDYLASFFLWLGYFNSTLNPVI 316
+E KA KTL II G F +CW Q I + W+GY NS NP+I
Sbjct: 403 KEHKALKTLGIIMGTFTLCW-LPFFIVNIVHVIQDNLIRKEVYILLNWIGYVNSGFNPLI 461
Query: 317 YTVFSPEFRQAFKRILC 333
Y SP+FR AF+ +LC
Sbjct: 462 YCR-SPDFRIAFQELLC 477
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 59/103 (57%), Gaps = 10/103 (9%)
Query: 24 IMFVDKYWAVTN---VDYIHTRNANRIIMMIVVVWSVAFIVSLAP-QLGWKDPEYMDRIN 79
++ VD+Y+A+T+ + T+N R+I I++VW V+ + S P Q+ W + + IN
Sbjct: 134 VIAVDRYFAITSPFKYQSLLTKNKARVI--ILMVWIVSGLTSFLPIQMHWYRATHQEAIN 191
Query: 80 ----QQKCMVSQDVGYQIFATCSTFYVPLLVILVLYWKIYQTA 118
+ C + Y I ++ +FYVPL++++ +Y +++Q A
Sbjct: 192 CYAEETCCDFFTNQAYAIASSIVSFYVPLVIMVFVYSRVFQEA 234
>pdb|2RH1|A Chain A, High Resolution Crystal Structure Of Human B2-Adrenergic G
Protein- Coupled Receptor
Length = 500
Score = 55.5 bits (132), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 39/77 (50%), Gaps = 2/77 (2%)
Query: 257 RERKAAKTLAIITGAFVICWXXXXXXXXXXXXCQTCYISDYLASFFLWLGYFNSTLNPVI 316
+E KA KTL II G F +CW Q I + W+GY NS NP+I
Sbjct: 402 KEHKALKTLGIIMGTFTLCW-LPFFIVNIVHVIQDNLIRKEVYILLNWIGYVNSGFNPLI 460
Query: 317 YTVFSPEFRQAFKRILC 333
Y SP+FR AF+ +LC
Sbjct: 461 YCR-SPDFRIAFQELLC 476
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 59/103 (57%), Gaps = 10/103 (9%)
Query: 24 IMFVDKYWAVTN---VDYIHTRNANRIIMMIVVVWSVAFIVSLAP-QLGWKDPEYMDRIN 79
++ VD+Y+A+T+ + T+N R+I I++VW V+ + S P Q+ W + + IN
Sbjct: 133 VIAVDRYFAITSPFKYQSLLTKNKARVI--ILMVWIVSGLTSFLPIQMHWYRATHQEAIN 190
Query: 80 ----QQKCMVSQDVGYQIFATCSTFYVPLLVILVLYWKIYQTA 118
+ C + Y I ++ +FYVPL++++ +Y +++Q A
Sbjct: 191 CYAEETCCDFFTNQAYAIASSIVSFYVPLVIMVFVYSRVFQEA 233
>pdb|3SN6|R Chain R, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs
Protein Complex
Length = 514
Score = 55.5 bits (132), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 39/77 (50%), Gaps = 2/77 (2%)
Query: 257 RERKAAKTLAIITGAFVICWXXXXXXXXXXXXCQTCYISDYLASFFLWLGYFNSTLNPVI 316
+E KA KTL II G F +CW Q I + W+GY NS NP+I
Sbjct: 416 KEHKALKTLGIIMGTFTLCW-LPFFIVNIVHVIQDNLIRKEVYILLNWIGYVNSGFNPLI 474
Query: 317 YTVFSPEFRQAFKRILC 333
Y SP+FR AF+ +LC
Sbjct: 475 YCR-SPDFRIAFQELLC 490
Score = 47.8 bits (112), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 59/103 (57%), Gaps = 10/103 (9%)
Query: 24 IMFVDKYWAVTN---VDYIHTRNANRIIMMIVVVWSVAFIVSLAP-QLGWKDPEYMDRIN 79
++ VD+Y+A+T+ + T+N R+I I++VW V+ + S P Q+ W + + IN
Sbjct: 275 VIAVDRYFAITSPFKYQSLLTKNKARVI--ILMVWIVSGLTSFLPIQMHWYRATHQEAIN 332
Query: 80 ----QQKCMVSQDVGYQIFATCSTFYVPLLVILVLYWKIYQTA 118
+ C + Y I ++ +FYVPL++++ +Y +++Q A
Sbjct: 333 CYAEETCCDFFTNQAYAIASSIVSFYVPLVIMVFVYSRVFQEA 375
>pdb|3D4S|A Chain A, Cholesterol Bound Form Of Human Beta2 Adrenergic Receptor.
pdb|3NY8|A Chain A, Crystal Structure Of The Human Beta2 Adrenergic Receptor
In Complex With The Inverse Agonist Ici 118,551
pdb|3NY9|A Chain A, Crystal Structure Of The Human Beta2 Adrenergic Receptor
In Complex With A Novel Inverse Agonist
pdb|3NYA|A Chain A, Crystal Structure Of The Human Beta2 Adrenergic Receptor
In Complex With The Neutral Antagonist Alprenolol
Length = 490
Score = 55.5 bits (132), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 39/77 (50%), Gaps = 2/77 (2%)
Query: 257 RERKAAKTLAIITGAFVICWXXXXXXXXXXXXCQTCYISDYLASFFLWLGYFNSTLNPVI 316
+E KA KTL II G F +CW Q I + W+GY NS NP+I
Sbjct: 403 KEHKALKTLGIIMGTFTLCWLPFFIVNIVHVI-QDNLIRKEVYILLNWIGYVNSGFNPLI 461
Query: 317 YTVFSPEFRQAFKRILC 333
Y SP+FR AF+ +LC
Sbjct: 462 YCR-SPDFRIAFQELLC 477
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 61/107 (57%), Gaps = 10/107 (9%)
Query: 20 YSTVIMFVDKYWAVTN---VDYIHTRNANRIIMMIVVVWSVAFIVSLAP-QLGWKDPEYM 75
++ ++ VD+Y+A+T+ + T+N R+I I++VW V+ + S P Q+ W +
Sbjct: 130 WTLCVIAVDRYFAITSPFKYQSLLTKNKARVI--ILMVWIVSGLTSFLPIQMHWYRATHQ 187
Query: 76 DRIN----QQKCMVSQDVGYQIFATCSTFYVPLLVILVLYWKIYQTA 118
+ IN + C + Y I ++ +FYVPL++++ +Y +++Q A
Sbjct: 188 EAINCYAEETCCDFFTNQAYAIASSIVSFYVPLVIMVFVYSRVFQEA 234
>pdb|2R4R|A Chain A, Crystal Structure Of The Human Beta2 Adrenoceptor
Length = 365
Score = 55.5 bits (132), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 39/77 (50%), Gaps = 2/77 (2%)
Query: 257 RERKAAKTLAIITGAFVICWXXXXXXXXXXXXCQTCYISDYLASFFLWLGYFNSTLNPVI 316
+E KA KTL II G F +CW Q I + W+GY NS NP+I
Sbjct: 267 KEHKALKTLGIIMGTFTLCWLPFFIVNIVHVI-QDNLIRKEVYILLNWIGYVNSGFNPLI 325
Query: 317 YTVFSPEFRQAFKRILC 333
Y SP+FR AF+ +LC
Sbjct: 326 YCR-SPDFRIAFQELLC 341
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 59/103 (57%), Gaps = 10/103 (9%)
Query: 24 IMFVDKYWAVTN---VDYIHTRNANRIIMMIVVVWSVAFIVSLAP-QLGWKDPEYMDRIN 79
++ VD+Y+A+T+ + T+N R+I I++VW V+ + S P Q+ W + + IN
Sbjct: 126 VIAVDRYFAITSPFKYQSLLTKNKARVI--ILMVWIVSGLTSFLPIQMHWYRATHQEAIN 183
Query: 80 ----QQKCMVSQDVGYQIFATCSTFYVPLLVILVLYWKIYQTA 118
+ C + Y I ++ +FYVPL++++ +Y +++Q A
Sbjct: 184 CYANETCCDFFTNQAYAIASSIVSFYVPLVIMVFVYSRVFQEA 226
>pdb|3KJ6|A Chain A, Crystal Structure Of A Methylated Beta2 Adrenergic
Receptor- Fab Complex
Length = 366
Score = 55.1 bits (131), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 39/77 (50%), Gaps = 2/77 (2%)
Query: 257 RERKAAKTLAIITGAFVICWXXXXXXXXXXXXCQTCYISDYLASFFLWLGYFNSTLNPVI 316
+E KA KTL II G F +CW Q I + W+GY NS NP+I
Sbjct: 268 KEHKALKTLGIIMGTFTLCWLPFFIVNIVHVI-QDNLIRKEVYILLNWIGYVNSGFNPLI 326
Query: 317 YTVFSPEFRQAFKRILC 333
Y SP+FR AF+ +LC
Sbjct: 327 YCR-SPDFRIAFQELLC 342
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 59/103 (57%), Gaps = 10/103 (9%)
Query: 24 IMFVDKYWAVTN---VDYIHTRNANRIIMMIVVVWSVAFIVSLAP-QLGWKDPEYMDRIN 79
++ VD+Y+A+T+ + T+N R+I I++VW V+ + S P Q+ W + + IN
Sbjct: 127 VIAVDRYFAITSPFKYQSLLTKNKARVI--ILMVWIVSGLTSFLPIQMHWYRATHQEAIN 184
Query: 80 ----QQKCMVSQDVGYQIFATCSTFYVPLLVILVLYWKIYQTA 118
+ C + Y I ++ +FYVPL++++ +Y +++Q A
Sbjct: 185 CYAEETCCDFFTNQAYAIASSIVSFYVPLVIMVFVYSRVFQEA 227
>pdb|2R4S|A Chain A, Crystal Structure Of The Human Beta2 Adrenoceptor
Length = 342
Score = 54.7 bits (130), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 39/77 (50%), Gaps = 2/77 (2%)
Query: 257 RERKAAKTLAIITGAFVICWXXXXXXXXXXXXCQTCYISDYLASFFLWLGYFNSTLNPVI 316
+E KA KTL II G F +CW Q I + W+GY NS NP+I
Sbjct: 244 KEHKALKTLGIIMGTFTLCWLPFFIVNIVHVI-QDNLIRKEVYILLNWIGYVNSGFNPLI 302
Query: 317 YTVFSPEFRQAFKRILC 333
Y SP+FR AF+ +LC
Sbjct: 303 YCR-SPDFRIAFQELLC 318
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 59/103 (57%), Gaps = 10/103 (9%)
Query: 24 IMFVDKYWAVTN---VDYIHTRNANRIIMMIVVVWSVAFIVSLAP-QLGWKDPEYMDRIN 79
++ VD+Y+A+T+ + T+N R+I I++VW V+ + S P Q+ W + + IN
Sbjct: 103 VIAVDRYFAITSPFKYQSLLTKNKARVI--ILMVWIVSGLTSFLPIQMHWYRATHQEAIN 160
Query: 80 ----QQKCMVSQDVGYQIFATCSTFYVPLLVILVLYWKIYQTA 118
+ C + Y I ++ +FYVPL++++ +Y +++Q A
Sbjct: 161 CYANETCCDFFTNQAYAIASSIVSFYVPLVIMVFVYSRVFQEA 203
>pdb|3PDS|A Chain A, Irreversible Agonist-Beta2 Adrenoceptor Complex
Length = 458
Score = 54.7 bits (130), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 39/77 (50%), Gaps = 2/77 (2%)
Query: 257 RERKAAKTLAIITGAFVICWXXXXXXXXXXXXCQTCYISDYLASFFLWLGYFNSTLNPVI 316
+E KA KTL II G F +CW Q I + W+GY NS NP+I
Sbjct: 371 KEHKALKTLGIIMGTFTLCWLPFFIVNIVHVI-QDNLIRKEVYILLNWIGYVNSGFNPLI 429
Query: 317 YTVFSPEFRQAFKRILC 333
Y SP+FR AF+ +LC
Sbjct: 430 YCR-SPDFRIAFQELLC 445
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 59/103 (57%), Gaps = 10/103 (9%)
Query: 24 IMFVDKYWAVTN---VDYIHTRNANRIIMMIVVVWSVAFIVSLAP-QLGWKDPEYMDRIN 79
++ VD+Y+A+T+ + T+N R+I I++VW V+ + S P Q+ W + + IN
Sbjct: 102 VIAVDRYFAITSPFKYQSLLTKNKARVI--ILMVWIVSGLTSFLPIQMHWYRATHQEAIN 159
Query: 80 ----QQKCMVSQDVGYQIFATCSTFYVPLLVILVLYWKIYQTA 118
+ C + Y I ++ +FYVPL++++ +Y +++Q A
Sbjct: 160 CYAEETCCDFFTNQAYAIASSIVSFYVPLVIMVFVYSRVFQEA 202
>pdb|4GBR|A Chain A, N-terminal T4 Lysozyme Fusion Facilitates Crystallization
Of A G Protein Coupled Receptor
Length = 309
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 39/77 (50%), Gaps = 2/77 (2%)
Query: 257 RERKAAKTLAIITGAFVICWXXXXXXXXXXXXCQTCYISDYLASFFLWLGYFNSTLNPVI 316
+E KA KTL II G F +CW Q I + W+GY NS NP+I
Sbjct: 211 KEHKALKTLGIIMGTFTLCWLPFFIVNIVHVI-QDNLIRKEVYILLNWIGYVNSGFNPLI 269
Query: 317 YTVFSPEFRQAFKRILC 333
Y SP+FR AF+ +LC
Sbjct: 270 YCR-SPDFRIAFQELLC 285
Score = 45.8 bits (107), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 59/103 (57%), Gaps = 10/103 (9%)
Query: 24 IMFVDKYWAVTN---VDYIHTRNANRIIMMIVVVWSVAFIVSLAP-QLGWKDPEYMDRIN 79
++ VD+Y+A+T+ + T+N R+I I++VW V+ + S P Q+ W + + IN
Sbjct: 98 VIAVDRYFAITSPFKYQSLLTKNKARVI--ILMVWIVSGLTSFLPIQMHWYRATHQEAIN 155
Query: 80 ----QQKCMVSQDVGYQIFATCSTFYVPLLVILVLYWKIYQTA 118
+ C + Y I ++ +FYVPL++++ +Y +++Q A
Sbjct: 156 CYAEETCCDFFTNQAYAIASSIVSFYVPLVIMVFVYSRVFQEA 198
>pdb|4DAJ|A Chain A, Structure Of The M3 Muscarinic Acetylcholine Receptor
pdb|4DAJ|B Chain B, Structure Of The M3 Muscarinic Acetylcholine Receptor
pdb|4DAJ|C Chain C, Structure Of The M3 Muscarinic Acetylcholine Receptor
pdb|4DAJ|D Chain D, Structure Of The M3 Muscarinic Acetylcholine Receptor
Length = 479
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 40/76 (52%), Gaps = 1/76 (1%)
Query: 257 RERKAAKTLAIITGAFVICWXXXXXXXXXXXXCQTCYISDYLASFFLWLGYFNSTLNPVI 316
+E+KAA+TL+ I AF+I W C +C Y + WL Y NST+NPV
Sbjct: 368 KEKKAAQTLSAILLAFIITWTPYNIMVLVNTFCDSCIPKTYW-NLGYWLCYINSTVNPVC 426
Query: 317 YTVFSPEFRQAFKRIL 332
Y + + FR FK +L
Sbjct: 427 YALCNKTFRTTFKTLL 442
Score = 38.1 bits (87), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 21/97 (21%), Positives = 48/97 (49%), Gaps = 3/97 (3%)
Query: 23 VIMFVDKYWAVTN-VDYIHTRNANRIIMMIVVVWSVAFIVSLAPQLGWKDPEYMDRINQQ 81
+++ D+Y+++T + Y R R +MI + W ++F++ L W+ +
Sbjct: 104 LVISFDRYFSITRPLTYRAKRTTKRAGVMIGLAWVISFVLWAPAILFWQYFVGKRTVPPG 163
Query: 82 KCMVS--QDVGYQIFATCSTFYVPLLVILVLYWKIYQ 116
+C + + + FY+P+ ++ +LYW+IY+
Sbjct: 164 ECFIQFLSEPTITFGTAIAAFYMPVTIMTILYWRIYK 200
>pdb|3EML|A Chain A, The 2.6 A Crystal Structure Of A Human A2a Adenosine
Receptor Bound To Zm241385.
pdb|3QAK|A Chain A, Agonist Bound Structure Of The Human Adenosine A2a
Receptor
Length = 488
Score = 51.2 bits (121), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 40/78 (51%), Gaps = 1/78 (1%)
Query: 256 KRERKAAKTLAIITGAFVICWXXXXXXXXXXXXCQTC-YISDYLASFFLWLGYFNSTLNP 314
++E AAK+LAII G F +CW C C + +L + L + NS +NP
Sbjct: 388 QKEVHAAKSLAIIVGLFALCWLPLHIINCFTFFCPDCSHAPLWLMYLAIVLSHTNSVVNP 447
Query: 315 VIYTVFSPEFRQAFKRIL 332
IY EFRQ F++I+
Sbjct: 448 FIYAYRIREFRQTFRKII 465
Score = 33.5 bits (75), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 29/112 (25%), Positives = 53/112 (47%), Gaps = 13/112 (11%)
Query: 20 YSTVIMFVDKYWAV-TNVDYIHTRNANRIIMMIVVVWSVAFIVSLAPQLGWKD---PEYM 75
+S + + +D+Y A+ + Y R +I + W ++F + L P LGW + P+
Sbjct: 108 FSLLAIAIDRYIAIRIPLRYNGLVTGTRAKGIIAICWVLSFAIGLTPMLGWNNCGQPKEG 167
Query: 76 DRINQ-----QKCMVSQDV---GYQI-FATCSTFYVPLLVILVLYWKIYQTA 118
+Q Q + +DV Y + F + VPLL++L +Y +I+ A
Sbjct: 168 KNHSQGCGEGQVACLFEDVVPMNYMVYFNFFACVLVPLLLMLGVYLRIFLAA 219
>pdb|3VG9|A Chain A, Crystal Structure Of Human Adenosine A2a Receptor With An
Allosteric Inverse-Agonist Antibody At 2.7 A Resolution
pdb|3VGA|A Chain A, Crystal Structure Of Human Adenosine A2a Receptor With An
Allosteric Inverse-Agonist Antibody At 3.1 A Resolution
Length = 326
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 40/78 (51%), Gaps = 1/78 (1%)
Query: 256 KRERKAAKTLAIITGAFVICWXXXXXXXXXXXXCQTC-YISDYLASFFLWLGYFNSTLNP 314
++E AAK+LAII G F +CW C C + +L + L + NS +NP
Sbjct: 226 QKEVHAAKSLAIIVGLFALCWLPLHIINCFTFFCPDCSHAPLWLMYLAIVLSHTNSVVNP 285
Query: 315 VIYTVFSPEFRQAFKRIL 332
IY EFRQ F++I+
Sbjct: 286 FIYAYRIREFRQTFRKII 303
Score = 33.5 bits (75), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 29/112 (25%), Positives = 54/112 (48%), Gaps = 13/112 (11%)
Query: 20 YSTVIMFVDKYWAV-TNVDYIHTRNANRIIMMIVVVWSVAFIVSLAPQLGWKD---PEYM 75
+S + + +D+Y A+ + Y R +I + W ++F + L P LGW + P+
Sbjct: 93 FSLLAIAIDRYIAIRIPLRYNGLVTGTRAKGIIAICWVLSFAIGLTPMLGWNNCGQPKEG 152
Query: 76 DRINQ-----QKCMVSQDV---GYQI-FATCSTFYVPLLVILVLYWKIYQTA 118
+ +Q Q + +DV Y + F + VPLL++L +Y +I+ A
Sbjct: 153 KQHSQGCGEGQVACLFEDVVPMNYMVYFNFFACVLVPLLLMLGVYLRIFLAA 204
>pdb|2YDO|A Chain A, Thermostabilised Human A2a Receptor With Adenosine Bound
pdb|2YDV|A Chain A, Thermostabilised Human A2a Receptor With Neca Bound
Length = 325
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 40/78 (51%), Gaps = 1/78 (1%)
Query: 256 KRERKAAKTLAIITGAFVICWXXXXXXXXXXXXCQTC-YISDYLASFFLWLGYFNSTLNP 314
++E AAK+LAII G F +CW C C + +L + L + NS +NP
Sbjct: 226 QKEVHAAKSLAIIVGLFALCWLPLHIINCFTFFCPDCSHAPLWLMYLAIVLSHTNSVVNP 285
Query: 315 VIYTVFSPEFRQAFKRIL 332
IY EFRQ F++I+
Sbjct: 286 FIYAYRIREFRQTFRKII 303
Score = 33.5 bits (75), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 28/113 (24%), Positives = 52/113 (46%), Gaps = 15/113 (13%)
Query: 20 YSTVIMFVDKYWAV-TNVDYIHTRNANRIIMMIVVVWSVAFIVSLAPQLGWKD---PEYM 75
+S + + +D+Y A+ + Y R +I + W ++F + L P LGW + P+
Sbjct: 93 FSLLAIAIDRYIAIRIPLRYNGLVTGTRAKGIIAICWVLSFAIGLTPMLGWNNCGQPKE- 151
Query: 76 DRINQQKCMVSQ---------DVGYQI-FATCSTFYVPLLVILVLYWKIYQTA 118
+ + Q C Q + Y + F + VPLL++L +Y +I+ A
Sbjct: 152 GKAHSQGCGEGQVACLFEDVVPMNYMVYFNFFACVLVPLLLMLGVYLRIFLAA 204
>pdb|3UON|A Chain A, Structure Of The Human M2 Muscarinic Acetylcholine
Receptor Bound To An Antagonist
Length = 467
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 42/87 (48%), Gaps = 2/87 (2%)
Query: 257 RERKAAKTLAIITGAFVICWXXXXXXXXXXXXCQTCYISDYLASFFLWLGYFNSTLNPVI 316
RE+K +T+ I AF+I W C C I + + + WL Y NST+NP
Sbjct: 382 REKKVTRTILAILLAFIITWAPYNVMVLINTFCAPC-IPNTVWTIGYWLCYINSTINPAC 440
Query: 317 YTVFSPEFRQAFKRIL-CGSPNRGRFR 342
Y + + F++ FK +L C N G R
Sbjct: 441 YALCNATFKKTFKHLLMCHYKNIGATR 467
Score = 38.1 bits (87), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 24/95 (25%), Positives = 44/95 (46%), Gaps = 3/95 (3%)
Query: 23 VIMFVDKYWAVTN-VDYIHTRNANRIIMMIVVVWSVAFIVSLAPQLGWKDPEYMDRINQQ 81
+I+ D+Y+ VT + Y R MMI W ++FI+ L W+ + +
Sbjct: 115 LIISFDRYFCVTKPLTYPVKRTTKMAGMMIAAAWVLSFILWAPAILFWQFIVGVRTVEDG 174
Query: 82 KCMVS--QDVGYQIFATCSTFYVPLLVILVLYWKI 114
+C + + + FY+P++++ VLYW I
Sbjct: 175 ECYIQFFSNAAVTFGTAIAAFYLPVIIMTVLYWHI 209
>pdb|3V2W|A Chain A, Crystal Structure Of A Lipid G Protein-Coupled Receptor At
3.35a
pdb|3V2Y|A Chain A, Crystal Structure Of A Lipid G Protein-Coupled Receptor At
2.80a
Length = 520
Score = 48.9 bits (115), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 40/76 (52%), Gaps = 4/76 (5%)
Query: 263 KTLAIITGAFVICWXXXXXXXXXXXXCQ--TCYISDYLASFFLWLGYFNSTLNPVIYTVF 320
KT+ I+ F+ CW C+ TC I + A +FL L NS NP+IYT+
Sbjct: 421 KTVIIVLSVFIACWAPLFILLLLDVGCKVKTCDIL-FRAEYFLVLAVLNSGTNPIIYTLT 479
Query: 321 SPEFRQAFKRILCGSP 336
+ E R+AF RI+ G P
Sbjct: 480 NKEMRRAFIRIM-GRP 494
Score = 31.6 bits (70), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 21/97 (21%), Positives = 47/97 (48%), Gaps = 3/97 (3%)
Query: 20 YSTVIMFVDKYWAVTNVDYIHTRNANRIIMMIVVVWSVAFIVSLAPQLGWKDPEYMDRIN 79
+S + + +++Y + + + N R+ ++I W ++ I+ P +GW + +
Sbjct: 151 FSLLAIAIERYITMLKMKLHNGSNNFRLFLLISACWVISLILGGLPIMGWNCISALSSCS 210
Query: 80 QQKCMVSQDVGYQIFATCSTFYVPLLVILVLYWKIYQ 116
+ + Y +F T + F + LL I++LY +IY
Sbjct: 211 TVLPLYHKH--YILFCT-TVFTLLLLSIVILYCRIYS 244
>pdb|3PWH|A Chain A, Thermostabilised Adenosine A2a Receptor
pdb|3REY|A Chain A, Thermostabilised Adenosine A2a Receptor In Complex With
Xac
pdb|3RFM|A Chain A, Thermostabilised Adenosine A2a Receptor In Complex With
Caffeine
pdb|3UZA|A Chain A, Thermostabilised Adenosine A2a Receptor In Complex With
6-(2,6-
Dimethylpyridin-4-Yl)-5-Phenyl-1,2,4-Triazin-3-Amine
pdb|3UZC|A Chain A, Thermostabilised Adenosine A2a Receptor In Complex With
4-(3-Amino-5- Phenyl-1,2,4-Triazin-6-Yl)-2-Chlorophenol
Length = 329
Score = 48.5 bits (114), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 39/78 (50%), Gaps = 1/78 (1%)
Query: 256 KRERKAAKTLAIITGAFVICWXXXXXXXXXXXXCQTC-YISDYLASFFLWLGYFNSTLNP 314
++E AAK+ AII G F +CW C C + +L + L + NS +NP
Sbjct: 226 QKEVHAAKSAAIIAGLFALCWLPLHIINCFTFFCPDCSHAPLWLMYLAIVLAHTNSVVNP 285
Query: 315 VIYTVFSPEFRQAFKRIL 332
IY EFRQ F++I+
Sbjct: 286 FIYAYRIREFRQTFRKII 303
Score = 33.9 bits (76), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 29/112 (25%), Positives = 53/112 (47%), Gaps = 13/112 (11%)
Query: 20 YSTVIMFVDKYWAVT-NVDYIHTRNANRIIMMIVVVWSVAFIVSLAPQLGWKD---PEYM 75
+S + + +D+Y A+ + Y R +I + W ++F + L P LGW + P+
Sbjct: 93 FSLLAIAIDRYIAIAIPLRYNGLVTGTRAAGIIAICWVLSFAIGLTPMLGWNNCGQPKEG 152
Query: 76 DRINQ-----QKCMVSQDV---GYQI-FATCSTFYVPLLVILVLYWKIYQTA 118
+Q Q + +DV Y + F + VPLL++L +Y +I+ A
Sbjct: 153 KNHSQGCGEGQVACLFEDVVPMNYMVYFNFFACVLVPLLLMLGVYLRIFAAA 204
>pdb|4GRV|A Chain A, The Crystal Structure Of The Neurotensin Receptor Nts1 In
Complex With Neurotensin (8-13)
Length = 510
Score = 37.4 bits (85), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 34/80 (42%), Gaps = 18/80 (22%)
Query: 271 AFVICWXXXXXXXXXXXXCQTCYISDYLASFFLW------------LGYFNSTLNPVIYT 318
AFV+CW CYISD + FL+ L Y +S +NP++Y
Sbjct: 417 AFVVCWLPYHVRRLMF-----CYISDEQWTTFLFDFYHYFYMLTNALAYASSAINPILYN 471
Query: 319 VFSPEFRQAFKRIL-CGSPN 337
+ S FRQ F L C P
Sbjct: 472 LVSANFRQVFLSTLACLCPG 491
>pdb|4EA3|A Chain A, Structure Of The NOFQ OPIOID RECEPTOR IN COMPLEX WITH A
PEPTIDE Mimetic
pdb|4EA3|B Chain B, Structure Of The NOFQ OPIOID RECEPTOR IN COMPLEX WITH A
PEPTIDE Mimetic
Length = 434
Score = 36.2 bits (82), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 305 LGYFNSTLNPVIYTVFSPEFRQAFKRILCGS 335
LGY NS LNP++Y F+ F++ C S
Sbjct: 381 LGYVNSCLNPILYAFLDENFKACFRKFCCAS 411
>pdb|4EJ4|A Chain A, Structure Of The Delta Opioid Receptor Bound To
Naltrindole
Length = 461
Score = 35.8 bits (81), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 22/32 (68%), Gaps = 1/32 (3%)
Query: 305 LGYFNSTLNPVIYTVFSPEFRQAFKRILCGSP 336
LGY NS+LNPV+Y F++ F++ LC +P
Sbjct: 425 LGYANSSLNPVLYAFLDENFKRCFRQ-LCRTP 455
>pdb|4DJH|A Chain A, Structure Of The Human Kappa Opioid Receptor In Complex
With Jdtic
pdb|4DJH|B Chain B, Structure Of The Human Kappa Opioid Receptor In Complex
With Jdtic
Length = 480
Score = 33.9 bits (76), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 28/57 (49%), Gaps = 2/57 (3%)
Query: 275 CWXXXXXXXXXXXXCQTCYISDYLASFF--LWLGYFNSTLNPVIYTVFSPEFRQAFK 329
CW T + + L+S++ + LGY NS+LNP++Y F++ F+
Sbjct: 408 CWTPIHIFILVEALGSTSHSTAALSSYYFCIALGYTNSSLNPILYAFLDENFKRCFR 464
>pdb|3OAX|A Chain A, Crystal Structure Of Bovine Rhodopsin With Beta-Ionone
pdb|3OAX|B Chain B, Crystal Structure Of Bovine Rhodopsin With Beta-Ionone
pdb|1GZM|A Chain A, Structure Of Bovine Rhodopsin In A Trigonal Crystal Form
pdb|1GZM|B Chain B, Structure Of Bovine Rhodopsin In A Trigonal Crystal Form
pdb|1HZX|A Chain A, Crystal Structure Of Bovine Rhodopsin
pdb|1HZX|B Chain B, Crystal Structure Of Bovine Rhodopsin
pdb|2I36|A Chain A, Crystal Structure Of Trigonal Crystal Form Of Ground-State
Rhodopsin
pdb|2I36|B Chain B, Crystal Structure Of Trigonal Crystal Form Of Ground-State
Rhodopsin
pdb|2I36|C Chain C, Crystal Structure Of Trigonal Crystal Form Of Ground-State
Rhodopsin
pdb|2I35|A Chain A, Crystal Structure Of Rhombohedral Crystal Form Of
Ground-State Rhodopsin
pdb|2I37|A Chain A, Crystal Structure Of A Photoactivated Rhodopsin
pdb|2I37|B Chain B, Crystal Structure Of A Photoactivated Rhodopsin
pdb|2I37|C Chain C, Crystal Structure Of A Photoactivated Rhodopsin
pdb|2HPY|A Chain A, Crystallographic Model Of Lumirhodopsin
pdb|2HPY|B Chain B, Crystallographic Model Of Lumirhodopsin
pdb|2PED|A Chain A, Crystallographic Model Of 9-Cis-Rhodopsin
pdb|2PED|B Chain B, Crystallographic Model Of 9-Cis-Rhodopsin
pdb|2G87|A Chain A, Crystallographic Model Of Bathorhodopsin
pdb|2G87|B Chain B, Crystallographic Model Of Bathorhodopsin
pdb|1L9H|A Chain A, Crystal Structure Of Bovine Rhodopsin At 2.6 Angstroms
Resolution
pdb|1L9H|B Chain B, Crystal Structure Of Bovine Rhodopsin At 2.6 Angstroms
Resolution
pdb|1U19|A Chain A, Crystal Structure Of Bovine Rhodopsin At 2.2 Angstroms
Resolution
pdb|1U19|B Chain B, Crystal Structure Of Bovine Rhodopsin At 2.2 Angstroms
Resolution
Length = 349
Score = 33.9 bits (76), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 35/85 (41%), Gaps = 6/85 (7%)
Query: 256 KRERKAAKTLAIITGAFVICWXXXXXXXXXXXXCQTCYISDYLASFFLWLGYFNST---L 312
K E++ + + I+ AF+ICW Q SD+ F +F T
Sbjct: 246 KAEKEVTRMVIIMVIAFLICWLPYAGVAFYIFTHQG---SDFGPIFMTIPAFFAKTSAVY 302
Query: 313 NPVIYTVFSPEFRQAFKRILCGSPN 337
NPVIY + + +FR LC N
Sbjct: 303 NPVIYIMMNKQFRNCMVTTLCCGKN 327
Score = 30.0 bits (66), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 23/115 (20%), Positives = 46/115 (40%), Gaps = 10/115 (8%)
Query: 8 GVLSHYNVDMLGYSTVIMFVDKYWAVTNVDYIHTRNANRIIMMIVVVWSVAFIVSLAPQL 67
G + ++ +S V++ +++Y V N IM + W +A + P +
Sbjct: 115 GFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLV 174
Query: 68 GWKDPEYMDRINQQKCMV--------SQDVGYQIFATCSTFYVPLLVILVLYWKI 114
GW Y+ Q C + + + + I+ F +PL+VI Y ++
Sbjct: 175 GWS--RYIPEGMQCSCGIDYYTPHEETNNESFVIYMFVVHFIIPLIVIFFCYGQL 227
>pdb|1JFP|A Chain A, Structure Of Bovine Rhodopsin (Dark Adapted)
pdb|1LN6|A Chain A, Structure Of Bovine Rhodopsin (Metarhodopsin Ii)
pdb|3CAP|A Chain A, Crystal Structure Of Native Opsin: The G Protein-Coupled
Receptor Rhodopsin In Its Ligand-Free State
pdb|3CAP|B Chain B, Crystal Structure Of Native Opsin: The G Protein-Coupled
Receptor Rhodopsin In Its Ligand-Free State
pdb|3C9L|A Chain A, Structure Of Ground-State Bovine Rhodospin In A Hexagonal
Crystal Form
pdb|1F88|A Chain A, Crystal Structure Of Bovine Rhodopsin
pdb|1F88|B Chain B, Crystal Structure Of Bovine Rhodopsin
pdb|3DQB|A Chain A, Crystal Structure Of The Active G-protein-coupled Receptor
Opsin In Complex With A C-terminal Peptide Derived From
The Galpha Subunit Of Transducin
pdb|3PQR|A Chain A, Crystal Structure Of Metarhodopsin Ii In Complex With A
C-Terminal Peptide Derived From The Galpha Subunit Of
Transducin
pdb|3PXO|A Chain A, Crystal Structure Of Metarhodopsin Ii
Length = 348
Score = 33.9 bits (76), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 35/85 (41%), Gaps = 6/85 (7%)
Query: 256 KRERKAAKTLAIITGAFVICWXXXXXXXXXXXXCQTCYISDYLASFFLWLGYFNST---L 312
K E++ + + I+ AF+ICW Q SD+ F +F T
Sbjct: 245 KAEKEVTRMVIIMVIAFLICWLPYAGVAFYIFTHQG---SDFGPIFMTIPAFFAKTSAVY 301
Query: 313 NPVIYTVFSPEFRQAFKRILCGSPN 337
NPVIY + + +FR LC N
Sbjct: 302 NPVIYIMMNKQFRNCMVTTLCCGKN 326
Score = 30.0 bits (66), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 23/115 (20%), Positives = 46/115 (40%), Gaps = 10/115 (8%)
Query: 8 GVLSHYNVDMLGYSTVIMFVDKYWAVTNVDYIHTRNANRIIMMIVVVWSVAFIVSLAPQL 67
G + ++ +S V++ +++Y V N IM + W +A + P +
Sbjct: 114 GFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLV 173
Query: 68 GWKDPEYMDRINQQKCMV--------SQDVGYQIFATCSTFYVPLLVILVLYWKI 114
GW Y+ Q C + + + + I+ F +PL+VI Y ++
Sbjct: 174 GWS--RYIPEGMQCSCGIDYYTPHEETNNESFVIYMFVVHFIIPLIVIFFCYGQL 226
>pdb|2LNL|A Chain A, Structure Of Human Cxcr1 In Phospholipid Bilayers
Length = 296
Score = 33.1 bits (74), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 17/28 (60%)
Query: 305 LGYFNSTLNPVIYTVFSPEFRQAFKRIL 332
LG+ +S LNP+IY FR F +IL
Sbjct: 265 LGFLHSCLNPIIYAFIGQNFRHGFLKIL 292
>pdb|4DKL|A Chain A, Crystal Structure Of The Mu-Opioid Receptor Bound To A
Morphinan Antagonist
Length = 464
Score = 32.0 bits (71), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 18/30 (60%)
Query: 301 FFLWLGYFNSTLNPVIYTVFSPEFRQAFKR 330
F + LGY NS LNPV+Y F++ F+
Sbjct: 423 FCIALGYTNSCLNPVLYAFLDENFKRCFRE 452
>pdb|2Z73|A Chain A, Crystal Structure Of Squid Rhodopsin
pdb|2Z73|B Chain B, Crystal Structure Of Squid Rhodopsin
pdb|3AYM|A Chain A, Crystal Structure Of The Batho Intermediate Of Squid
Rhodopsin
pdb|3AYM|B Chain B, Crystal Structure Of The Batho Intermediate Of Squid
Rhodopsin
pdb|3AYN|A Chain A, Crystal Structure Of Squid Isorhodopsin
pdb|3AYN|B Chain B, Crystal Structure Of Squid Isorhodopsin
Length = 448
Score = 32.0 bits (71), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 23/101 (22%), Positives = 39/101 (38%), Gaps = 1/101 (0%)
Query: 227 SQSNHNNECVQVXXXXXXXXXXXXXSLEAKRERKAAKTLAIITGAFVICWXXXXXXXXXX 286
S SNH E + + A E + AK +I F++ W
Sbjct: 226 SVSNHEKEMAAMAKRLNAKELRKAQA-GANAEMRLAKISIVIVSQFLLSWSPYAVVALLA 284
Query: 287 XXCQTCYISDYLASFFLWLGYFNSTLNPVIYTVFSPEFRQA 327
+++ Y A + ++ NP+IY+V P+FR+A
Sbjct: 285 QFGPLEWVTPYAAQLPVMFAKASAIHNPMIYSVSHPKFREA 325
>pdb|2ZIY|A Chain A, Crystal Structure Of Squid Rhodopsin
Length = 372
Score = 32.0 bits (71), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 23/101 (22%), Positives = 39/101 (38%), Gaps = 1/101 (0%)
Query: 227 SQSNHNNECVQVXXXXXXXXXXXXXSLEAKRERKAAKTLAIITGAFVICWXXXXXXXXXX 286
S SNH E + + A E + AK +I F++ W
Sbjct: 225 SVSNHEKEMAAMAKRLNAKELRKAQA-GANAEMRLAKISIVIVSQFLLSWSPYAVVALLA 283
Query: 287 XXCQTCYISDYLASFFLWLGYFNSTLNPVIYTVFSPEFRQA 327
+++ Y A + ++ NP+IY+V P+FR+A
Sbjct: 284 QFGPLEWVTPYAAQLPVMFAKASAIHNPMIYSVSHPKFREA 324
>pdb|2X72|A Chain A, Crystal Structure Of The Constitutively Active E113q,N2c,
D282c Rhodopsin Mutant With Bound Galphact Peptide
Length = 349
Score = 32.0 bits (71), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 19/82 (23%), Positives = 32/82 (39%)
Query: 256 KRERKAAKTLAIITGAFVICWXXXXXXXXXXXXCQTCYISDYLASFFLWLGYFNSTLNPV 315
K E++ + + I+ AF+ICW Q + + ++ NPV
Sbjct: 246 KAEKEVTRMVIIMVIAFLICWLPYAGVAFYIFTHQGSCFGPIFMTIPAFFAKTSAVYNPV 305
Query: 316 IYTVFSPEFRQAFKRILCGSPN 337
IY + + +FR LC N
Sbjct: 306 IYIMMNKQFRNCMVTTLCCGKN 327
Score = 30.0 bits (66), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 23/115 (20%), Positives = 46/115 (40%), Gaps = 10/115 (8%)
Query: 8 GVLSHYNVDMLGYSTVIMFVDKYWAVTNVDYIHTRNANRIIMMIVVVWSVAFIVSLAPQL 67
G + ++ +S V++ +++Y V N IM + W +A + P +
Sbjct: 115 GFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLV 174
Query: 68 GWKDPEYMDRINQQKCMV--------SQDVGYQIFATCSTFYVPLLVILVLYWKI 114
GW Y+ Q C + + + + I+ F +PL+VI Y ++
Sbjct: 175 GWS--RYIPEGMQCSCGIDYYTPHEETNNESFVIYMFVVHFIIPLIVIFFCYGQL 227
>pdb|2J4Y|A Chain A, Crystal Structure Of A Rhodopsin Stabilizing Mutant
Expressed In Mammalian Cells
pdb|2J4Y|B Chain B, Crystal Structure Of A Rhodopsin Stabilizing Mutant
Expressed In Mammalian Cells
Length = 349
Score = 32.0 bits (71), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 19/82 (23%), Positives = 32/82 (39%)
Query: 256 KRERKAAKTLAIITGAFVICWXXXXXXXXXXXXCQTCYISDYLASFFLWLGYFNSTLNPV 315
K E++ + + I+ AF+ICW Q + + ++ NPV
Sbjct: 246 KAEKEVTRMVIIMVIAFLICWLPYAGVAFYIFTHQGSCFGPIFMTIPAFFAKTSAVYNPV 305
Query: 316 IYTVFSPEFRQAFKRILCGSPN 337
IY + + +FR LC N
Sbjct: 306 IYIMMNKQFRNCMVTTLCCGKN 327
Score = 30.0 bits (66), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 23/115 (20%), Positives = 46/115 (40%), Gaps = 10/115 (8%)
Query: 8 GVLSHYNVDMLGYSTVIMFVDKYWAVTNVDYIHTRNANRIIMMIVVVWSVAFIVSLAPQL 67
G + ++ +S V++ +++Y V N IM + W +A + P +
Sbjct: 115 GFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLV 174
Query: 68 GWKDPEYMDRINQQKCMV--------SQDVGYQIFATCSTFYVPLLVILVLYWKI 114
GW Y+ Q C + + + + I+ F +PL+VI Y ++
Sbjct: 175 GWS--RYIPEGMQCSCGIDYYTPHEETNNESFVIYMFVVHFIIPLIVIFFCYGQL 227
>pdb|3C9M|A Chain A, Structure Of A Mutant Bovine Rhodopsin In Hexagonal
Crystal Form
Length = 348
Score = 32.0 bits (71), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 19/82 (23%), Positives = 32/82 (39%)
Query: 256 KRERKAAKTLAIITGAFVICWXXXXXXXXXXXXCQTCYISDYLASFFLWLGYFNSTLNPV 315
K E++ + + I+ AF+ICW Q + + ++ NPV
Sbjct: 245 KAEKEVTRMVIIMVIAFLICWLPYAGVAFYIFTHQGSCFGPIFMTIPAFFAKTSAVYNPV 304
Query: 316 IYTVFSPEFRQAFKRILCGSPN 337
IY + + +FR LC N
Sbjct: 305 IYIMMNKQFRNCMVTTLCCGKN 326
Score = 30.0 bits (66), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 23/115 (20%), Positives = 46/115 (40%), Gaps = 10/115 (8%)
Query: 8 GVLSHYNVDMLGYSTVIMFVDKYWAVTNVDYIHTRNANRIIMMIVVVWSVAFIVSLAPQL 67
G + ++ +S V++ +++Y V N IM + W +A + P +
Sbjct: 114 GFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLV 173
Query: 68 GWKDPEYMDRINQQKCMV--------SQDVGYQIFATCSTFYVPLLVILVLYWKI 114
GW Y+ Q C + + + + I+ F +PL+VI Y ++
Sbjct: 174 GWS--RYIPEGMQCSCGIDYYTPHEETNNESFVIYMFVVHFIIPLIVIFFCYGQL 226
>pdb|4A4M|A Chain A, Crystal Structure Of The Light-Activated Constitutively
Active N2c,M257y,D282c Rhodopsin Mutant In Complex With
A Peptide Resembling The C-Terminus Of The
Galpha-Protein Subunit (Gact)
Length = 349
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 19/82 (23%), Positives = 31/82 (37%)
Query: 256 KRERKAAKTLAIITGAFVICWXXXXXXXXXXXXCQTCYISDYLASFFLWLGYFNSTLNPV 315
K E++ + + I AF+ICW Q + + ++ NPV
Sbjct: 246 KAEKEVTRMVIIYVIAFLICWLPYAGVAFYIFTHQGSCFGPIFMTIPAFFAKTSAVYNPV 305
Query: 316 IYTVFSPEFRQAFKRILCGSPN 337
IY + + +FR LC N
Sbjct: 306 IYIMMNKQFRNCMVTTLCCGKN 327
Score = 30.0 bits (66), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 23/115 (20%), Positives = 46/115 (40%), Gaps = 10/115 (8%)
Query: 8 GVLSHYNVDMLGYSTVIMFVDKYWAVTNVDYIHTRNANRIIMMIVVVWSVAFIVSLAPQL 67
G + ++ +S V++ +++Y V N IM + W +A + P +
Sbjct: 115 GFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLV 174
Query: 68 GWKDPEYMDRINQQKCMV--------SQDVGYQIFATCSTFYVPLLVILVLYWKI 114
GW Y+ Q C + + + + I+ F +PL+VI Y ++
Sbjct: 175 GWS--RYIPEGMQCSCGIDYYTPHEETNNESFVIYMFVVHFIIPLIVIFFCYGQL 227
>pdb|2KOE|A Chain A, Human Cannabinoid Receptor 1 - Helix 78 PEPTIDE
Length = 40
Score = 30.4 bits (67), Expect = 1.5, Method: Composition-based stats.
Identities = 13/33 (39%), Positives = 20/33 (60%)
Query: 300 SFFLWLGYFNSTLNPVIYTVFSPEFRQAFKRIL 332
+F L NST+NP+IY + S + R AF+ +
Sbjct: 4 AFASMLCLLNSTVNPIIYALRSKDLRHAFRSMF 36
>pdb|3OE6|A Chain A, Crystal Structure Of The Cxcr4 Chemokine Receptor In
Complex With A Small Molecule Antagonist It1t In I222
Spacegroup
Length = 508
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 24/95 (25%), Positives = 39/95 (41%), Gaps = 10/95 (10%)
Query: 254 EAKRERKAAKTLAIITGAFVICWX------XXXXXXXXXXXCQTCYISDYL---ASFFLW 304
+ ++RKA KT I+ AF CW Q C + + S
Sbjct: 404 KGHQKRKALKTTVILILAFFACWLPYYIGISIDSFILLEIIKQGCEFENTVHKWISITEA 463
Query: 305 LGYFNSTLNPVIYTVFSPEFRQAFKRILCGSPNRG 339
L +F+ LNP++Y +F+ + + L S +RG
Sbjct: 464 LAFFHCCLNPILYAFLGAKFKTSAQHALT-SVSRG 497
>pdb|3ODU|A Chain A, The 2.5 A Structure Of The Cxcr4 Chemokine Receptor In
Complex With Small Molecule Antagonist It1t
pdb|3ODU|B Chain B, The 2.5 A Structure Of The Cxcr4 Chemokine Receptor In
Complex With Small Molecule Antagonist It1t
pdb|3OE8|A Chain A, Crystal Structure Of The Cxcr4 Chemokine Receptor In
Complex With A Small Molecule Antagonist It1t In P1
Spacegroup
pdb|3OE8|B Chain B, Crystal Structure Of The Cxcr4 Chemokine Receptor In
Complex With A Small Molecule Antagonist It1t In P1
Spacegroup
pdb|3OE8|C Chain C, Crystal Structure Of The Cxcr4 Chemokine Receptor In
Complex With A Small Molecule Antagonist It1t In P1
Spacegroup
Length = 502
Score = 30.0 bits (66), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 23/93 (24%), Positives = 37/93 (39%), Gaps = 10/93 (10%)
Query: 254 EAKRERKAAKTLAIITGAFVICWX------XXXXXXXXXXXCQTCYISDYL---ASFFLW 304
+ ++RKA KT I+ AF CW Q C + + S
Sbjct: 404 KGHQKRKALKTTVILILAFFACWLPYYIGISIDSFILLEIIKQGCEFENTVHKWISITEA 463
Query: 305 LGYFNSTLNPVIYTVFSPEFRQAFKRIL-CGSP 336
L +F+ LNP++Y +F+ + + L G P
Sbjct: 464 LAFFHCCLNPILYAFLGAKFKTSAQHALTSGRP 496
>pdb|1DEP|A Chain A, Membrane Protein, Nmr, 1 Structure
Length = 15
Score = 29.6 bits (65), Expect = 2.6, Method: Composition-based stats.
Identities = 10/13 (76%), Positives = 13/13 (100%)
Query: 321 SPEFRQAFKRILC 333
SP+FR+AFKR+LC
Sbjct: 2 SPDFRKAFKRLLC 14
>pdb|2KS9|A Chain A, Solution Conformation Of Substance P In Water Complexed
With Nk1r
pdb|2KSA|A Chain A, Substance P In DmpcCHAPS ISOTROPIC Q0.25 BICELLES AS A
LIGAND FOR Nk1r
pdb|2KSB|A Chain A, Substance P In Isotropic Q0.25 DmpcCHAPSGM1 BICELLES AS A
LIGAND For Nk1r
Length = 364
Score = 29.3 bits (64), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 17/68 (25%), Positives = 25/68 (36%), Gaps = 3/68 (4%)
Query: 272 FVICWXXXXXXXXXXXXCQTCYISDYLASFFL---WLGYFNSTLNPVIYTVFSPEFRQAF 328
F ICW Y+ ++ +L WL ++ NP+IY + FR F
Sbjct: 257 FAICWLPFHIFFLLPYINPDLYLKKFIQQVYLAIMWLAMSSTMYNPIIYCCLNDRFRLGF 316
Query: 329 KRILCGSP 336
K P
Sbjct: 317 KHAFRCCP 324
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.134 0.414
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,045,336
Number of Sequences: 62578
Number of extensions: 256914
Number of successful extensions: 463
Number of sequences better than 100.0: 40
Number of HSP's better than 100.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 357
Number of HSP's gapped (non-prelim): 72
length of query: 342
length of database: 14,973,337
effective HSP length: 100
effective length of query: 242
effective length of database: 8,715,537
effective search space: 2109159954
effective search space used: 2109159954
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 52 (24.6 bits)