Query psy4354
Match_columns 342
No_of_seqs 140 out of 1561
Neff 10.4
Searched_HMMs 29240
Date Fri Aug 16 23:25:19 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4354.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/4354hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4grv_A Neurotensin receptor ty 100.0 7.8E-42 2.7E-46 320.2 -2.6 122 4-125 110-239 (510)
2 3vw7_A Proteinase-activated re 100.0 7.2E-36 2.4E-40 278.0 9.9 122 4-126 93-223 (484)
3 2rh1_A Beta-2-adrenergic recep 100.0 5.4E-35 1.8E-39 273.3 15.4 118 4-124 113-239 (500)
4 3uon_A Human M2 muscarinic ace 100.0 4.2E-35 1.5E-39 271.5 11.2 124 4-127 96-222 (467)
5 3eml_A Human adenosine A2A rec 100.0 2E-34 6.8E-39 268.4 13.9 287 4-340 92-473 (488)
6 3pbl_A D(3) dopamine receptor, 100.0 1.9E-34 6.6E-39 268.1 11.8 283 4-340 112-478 (481)
7 4eiy_A Adenosine receptor A2A/ 100.0 2.1E-34 7.1E-39 265.4 11.1 287 4-340 102-432 (447)
8 3rze_A Histamine H1 receptor, 100.0 1.5E-34 5.2E-39 266.7 9.4 122 4-126 81-206 (452)
9 3v2y_A Sphingosine 1-phosphate 100.0 6.5E-34 2.2E-38 267.1 13.7 113 4-122 135-250 (520)
10 2z73_A Rhodopsin; visual pigme 100.0 1.1E-32 3.7E-37 254.3 17.8 217 4-333 108-331 (448)
11 4amj_A Beta-1 adrenergic recep 100.0 3.2E-33 1.1E-37 245.4 13.0 215 4-339 84-306 (315)
12 3odu_A C-X-C chemokine recepto 100.0 8.4E-35 2.9E-39 272.0 2.3 121 4-127 119-245 (502)
13 4dkl_A MU-type opioid receptor 100.0 1.3E-33 4.4E-38 261.2 10.2 121 4-127 89-217 (464)
14 1u19_A Rhodopsin; G protein-co 100.0 2.5E-33 8.5E-38 249.8 11.6 210 4-339 111-329 (349)
15 3sn6_R Lysozyme, beta-2 adrene 100.0 1.4E-32 4.8E-37 257.8 13.3 235 4-338 255-495 (514)
16 2lnl_A C-X-C chemokine recepto 100.0 3.8E-32 1.3E-36 237.0 12.0 200 4-335 82-295 (296)
17 2ks9_A Substance-P receptor; w 100.0 2.1E-31 7.3E-36 238.9 14.8 210 4-337 105-325 (364)
18 4ea3_A Fusion protein of nocic 100.0 6.6E-31 2.3E-35 241.4 14.5 209 4-339 197-415 (434)
19 2koe_A Human cannabinoid recep 99.0 3.8E-11 1.3E-15 70.2 1.2 38 298-335 2-39 (40)
20 2ki9_A Cannabinoid receptor 2; 98.5 1.2E-08 4.2E-13 56.3 -1.0 30 258-287 1-30 (33)
21 1hll_A Alpha-2A adrenergic rec 98.3 1.5E-08 5E-13 55.7 -3.5 29 17-45 2-31 (32)
22 2ket_A Cathelicidin-6; antimic 75.6 1.6 5.4E-05 20.8 1.5 14 322-335 4-17 (27)
23 2z73_A Rhodopsin; visual pigme 50.7 49 0.0017 29.1 7.9 32 305-336 299-330 (448)
24 3arc_M Photosystem II reaction 50.6 28 0.00095 18.7 3.7 23 92-114 7-29 (36)
25 2rdd_B UPF0092 membrane protei 46.3 34 0.0012 18.4 4.3 26 101-126 6-32 (37)
26 2jx4_A Vasopressin V2 receptor 35.4 48 0.0016 19.4 3.5 14 111-124 2-15 (52)
27 3uon_A Human M2 muscarinic ace 33.0 2.4E+02 0.0083 24.4 10.0 25 259-283 138-162 (467)
28 3noh_A Putative peptide bindin 30.0 29 0.00098 24.5 2.1 26 310-335 25-50 (139)
29 1btq_A BAND 3 anion transport 20.5 50 0.0017 16.3 1.3 18 264-281 2-19 (26)
No 1
>4grv_A Neurotensin receptor type 1, lysozyme chimera; G-protein coupled receptor, G-protein, signaling protein-agonist complex; HET: EPE; 2.80A {Rattus norvegicus}
Probab=100.00 E-value=7.8e-42 Score=320.20 Aligned_cols=122 Identities=14% Similarity=0.079 Sum_probs=99.5
Q ss_pred hhhHHHhhHHHHHhHHHHhhheeeceeEEEee-cccccccchhHHHHHHHHHHHHHHHHHHHhHhcccCCCcccc---cC
Q psy4354 4 LLFTGVLSHYNVDMLGYSTVIMFVDKYWAVTN-VDYIHTRNANRIIMMIVVVWSVAFIVSLAPQLGWKDPEYMDR---IN 79 (342)
Q Consensus 4 ~~~~~~l~~~~~~~S~~~l~~IaidRY~aI~~-~~y~~~~t~r~~~~~i~~~W~~s~~~~~p~~~~~~~~~~~~~---~~ 79 (342)
+-+.+++..++..+|++++++||+|||+||++ .+|+..+|++++.++++++|++++++++|++++++......+ ..
T Consensus 110 C~~~~~~~~~~~~~S~~~l~~is~dRy~ai~~P~~~~~~~t~~~~~~~i~~~W~~s~~~~~p~~~~~~~~~~~~~~~~~~ 189 (510)
T 4grv_A 110 CRGYYFLRDACTYATALNVASLSVARYLAICHPFKAKTLMSRSRTKKFISAIWLASALLAIPMLFTMGLQNRSADGTHPG 189 (510)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCCCCCCCCSCCHHHHHHHHHHHHHHHTTHHHHEEEEECSSSSCCGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHheEEEeccccccccccccccceeehHHHHHHHHHHHHHHHhhcccccccCCCCCC
Confidence 34667888999999999999999999999999 688888999999999999999999999999988764332221 12
Q ss_pred ccceeccCC----chhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy4354 80 QQKCMVSQD----VGYQIFATCSTFYVPLLVILVLYWKIYQTARKRIRRR 125 (342)
Q Consensus 80 ~~~C~~~~~----~~~~~~~~~~~~~ip~~~i~~~y~~I~~~vr~~~~~~ 125 (342)
...|....+ ..|.++.+++.|++|+++|+++|++|++.++++.+..
T Consensus 190 ~~~c~~~~~~~~~~~~~~~~~~~~f~iP~~ii~~~Y~~I~~~l~~~~~~~ 239 (510)
T 4grv_A 190 GLVCTPIVDTATVKVVIQVNTFMSFLFPMLVISILNTVIANKLTVMVNIF 239 (510)
T ss_dssp GEEEEECSCHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHTSCTHH
T ss_pred ccccccccccchhhhhhhhhhhHHHhhhHHHHHHHHHHHHHHHHHHhhhh
Confidence 445766443 3466677788899999999999999999999765443
No 2
>3vw7_A Proteinase-activated receptor 1, lysozyme; high resolution structure, protease-activated receptor 1, in conformation, antagonist vorapaxar; HET: VPX OLC; 2.20A {Homo sapiens}
Probab=100.00 E-value=7.2e-36 Score=278.01 Aligned_cols=122 Identities=16% Similarity=0.172 Sum_probs=95.2
Q ss_pred hhhHHHhhHHHHHhHHHHhhheeeceeEEEee-cccccccchhHHHHHHHHHHHHHHHHHHHhHhcccCCCcccccCccc
Q psy4354 4 LLFTGVLSHYNVDMLGYSTVIMFVDKYWAVTN-VDYIHTRNANRIIMMIVVVWSVAFIVSLAPQLGWKDPEYMDRINQQK 82 (342)
Q Consensus 4 ~~~~~~l~~~~~~~S~~~l~~IaidRY~aI~~-~~y~~~~t~r~~~~~i~~~W~~s~~~~~p~~~~~~~~~~~~~~~~~~ 82 (342)
+.+.+++..++..+|++++++||+|||+||++ .+|...++++++.++++++|++++++++|+++++...... ......
T Consensus 93 C~~~~~~~~~~~~~S~~~l~~is~dRy~aI~~P~~~~~~~t~~~~~~~i~~~W~~s~~~~~p~~~~~~~~~~~-~~~~~~ 171 (484)
T 3vw7_A 93 CRFVTAAFYCNMYASILLMTVISIDRFLAVVYPMQSLSWRTLGRASFTCLAIWALAIAGVVPLLLKEQTIQVP-GLGITT 171 (484)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-----CCHHHHHHHHHHHHHHHHHHHHHHHTSCCEEEET-TTTEEE
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHheEEEcccccccccchhHHHHHHHHHHHHHHHHHHHHHHhhhccccC-CCCCce
Confidence 45678889999999999999999999999999 6777789999999999999999999999988887654322 223456
Q ss_pred eeccCCc--------hhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy4354 83 CMVSQDV--------GYQIFATCSTFYVPLLVILVLYWKIYQTARKRIRRRR 126 (342)
Q Consensus 83 C~~~~~~--------~~~~~~~~~~~~ip~~~i~~~y~~I~~~vr~~~~~~~ 126 (342)
|...... .|.++..++.|++|+++|+++|++|++.++++.++..
T Consensus 172 C~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~ii~~~Y~~I~~~l~~~~~~~~ 223 (484)
T 3vw7_A 172 CHDVLSETLLEGYYAYYFSAFSAVFFFVPLIISTVCYVSIIRCLSSSANIFE 223 (484)
T ss_dssp ESSSCSSCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCHHH
T ss_pred eeccCCccchhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhHHHH
Confidence 8664221 1556666888999999999999999999998765443
No 3
>2rh1_A Beta-2-adrenergic receptor/T4-lysozyme chimera; GPCR, 7TM, fusion, lipidic cubic phase, lipidic, mesophase, cholesterol, membrane protein; HET: MAL CAU CLR PLM 12P; 2.40A {Homo sapiens} PDB: 3p0g_A* 3d4s_A* 3ny8_A* 3ny9_A* 3nya_A* 3pds_A*
Probab=100.00 E-value=5.4e-35 Score=273.31 Aligned_cols=118 Identities=23% Similarity=0.468 Sum_probs=94.8
Q ss_pred hhhHHHhhHHHHHhHHHHhhheeeceeEEEee-cccccccchhHHHHHHHHHHHHHHHHHHHhH-hcccCCCcccccCcc
Q psy4354 4 LLFTGVLSHYNVDMLGYSTVIMFVDKYWAVTN-VDYIHTRNANRIIMMIVVVWSVAFIVSLAPQ-LGWKDPEYMDRINQQ 81 (342)
Q Consensus 4 ~~~~~~l~~~~~~~S~~~l~~IaidRY~aI~~-~~y~~~~t~r~~~~~i~~~W~~s~~~~~p~~-~~~~~~~~~~~~~~~ 81 (342)
+-+.+++..++..+|++++++||+|||+||++ .+|...++++++.++++++|+++++++++|+ ++|...... . ..
T Consensus 113 C~~~~~~~~~~~~~Si~~l~~isidRy~aI~~Pl~~~~~~t~~~~~~~i~~~W~~s~~~~~~p~~~~~~~~~~~-~--~~ 189 (500)
T 2rh1_A 113 CEFWTSIDVLCVTASIETLCVIAVDRYFAITSPFKYQSLLTKNKARVIILMVWIVSGLTSFLPIQMHWYRATHQ-E--AI 189 (500)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSTTSCSSCHHHHHHHHHHHHHHHHHHHHHHHHTTTTCCCSH-H--HH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHeeccCcCCeeecccceeehhhHHHHHHHHHHhcchheeeeccccc-C--cc
Confidence 44567788889999999999999999999999 6777889999999999999999999996555 455443211 1 22
Q ss_pred ce-------eccCCchhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4354 82 KC-------MVSQDVGYQIFATCSTFYVPLLVILVLYWKIYQTARKRIRR 124 (342)
Q Consensus 82 ~C-------~~~~~~~~~~~~~~~~~~ip~~~i~~~y~~I~~~vr~~~~~ 124 (342)
.| .......|.++.+++.|++|+++|+++|++|++.+|++.++
T Consensus 190 ~c~~~~~~~~~~~~~~y~~~~~~~~~~iPl~ii~~~Y~~I~~~l~~~~~~ 239 (500)
T 2rh1_A 190 NCYAEETCCDFFTNQAYAIASSIVSFYVPLVIMVFVYSRVFQEAKRQLNI 239 (500)
T ss_dssp HHHHCTTCCCCCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHCSH
T ss_pred eecccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 23 22345678888888899999999999999999999997665
No 4
>3uon_A Human M2 muscarinic acetylcholine, receptor T4 LY fusion protein; G protein-coupled receptor, GPCR, SI protein-antagonist complex; HET: QNB BGC; 3.00A {Homo sapiens} PDB: 4daj_A*
Probab=100.00 E-value=4.2e-35 Score=271.51 Aligned_cols=124 Identities=22% Similarity=0.405 Sum_probs=103.0
Q ss_pred hhhHHHhhHHHHHhHHHHhhheeeceeEEEee-cccccccchhHHHHHHHHHHHHHHHHHHHhHhcccCCCcccccCccc
Q psy4354 4 LLFTGVLSHYNVDMLGYSTVIMFVDKYWAVTN-VDYIHTRNANRIIMMIVVVWSVAFIVSLAPQLGWKDPEYMDRINQQK 82 (342)
Q Consensus 4 ~~~~~~l~~~~~~~S~~~l~~IaidRY~aI~~-~~y~~~~t~r~~~~~i~~~W~~s~~~~~p~~~~~~~~~~~~~~~~~~ 82 (342)
+.+.+++..++..+|++++++||+|||+||++ .+|...++.+++.++++++|++++++++|++++|.........+...
T Consensus 96 C~~~~~~~~~~~~~s~~~l~~isidRy~ai~~P~~~~~~~~~~~~~~~i~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (467)
T 3uon_A 96 CDLWLALDYVVSNASVMNLLIISFDRYFCVTKPLTYPVKRTTKMAGMMIAAAWVLSFILWAPAILFWQFIVGVRTVEDGE 175 (467)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTSGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCCCSSC
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHhhhcccccCCCCCc
Confidence 45778899999999999999999999999999 67888899999999999999999999999888766432222223556
Q ss_pred eecc--CCchhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy4354 83 CMVS--QDVGYQIFATCSTFYVPLLVILVLYWKIYQTARKRIRRRRQ 127 (342)
Q Consensus 83 C~~~--~~~~~~~~~~~~~~~ip~~~i~~~y~~I~~~vr~~~~~~~~ 127 (342)
|... ....|.++..++.|++|+++++++|++|++.+|++.++...
T Consensus 176 C~~~~~~~~~~~~~~~~~~~~~p~~ii~~~y~~I~~~l~~~~~~~~~ 222 (467)
T 3uon_A 176 CYIQFFSNAAVTFGTAIAAFYLPVIIMTVLYWHISRASKSRINIFEM 222 (467)
T ss_dssp CCCGGGGSHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTTCCCHHHH
T ss_pred ceeecCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 7664 44567788888899999999999999999999987655443
No 5
>3eml_A Human adenosine A2A receptor/T4 lysozyme chimera; caffeine, GPCR, membrane protein, LCP, mesophase, structural genomics, PSI-2; HET: ZMA STE; 2.60A {Homo sapiens} PDB: 3qak_A*
Probab=100.00 E-value=2e-34 Score=268.36 Aligned_cols=287 Identities=24% Similarity=0.354 Sum_probs=179.4
Q ss_pred hhhHHHhhHHHHHhHHHHhhheeeceeEEEee-cccccccchhHHHHHHHHHHHHHHHHHHHhHhcccCCCcccc--cCc
Q psy4354 4 LLFTGVLSHYNVDMLGYSTVIMFVDKYWAVTN-VDYIHTRNANRIIMMIVVVWSVAFIVSLAPQLGWKDPEYMDR--INQ 80 (342)
Q Consensus 4 ~~~~~~l~~~~~~~S~~~l~~IaidRY~aI~~-~~y~~~~t~r~~~~~i~~~W~~s~~~~~p~~~~~~~~~~~~~--~~~ 80 (342)
+.+.+++..++..+|++++++||+|||+||++ .+|...++++++.++++++|++++++++|++++|........ ...
T Consensus 92 C~~~~~~~~~~~~~s~~~l~~is~dRy~aI~~P~~~~~~~~~~~~~~~i~~~W~~s~~~~~~~~~~~~~~~~~~~~~~~~ 171 (488)
T 3eml_A 92 CLFIACFVLVLTQSSIFSLLAIAIDRYIAIRIPLRYNGLVTGTRAKGIIAICWVLSFAIGLTPMLGWNNCGQPKEGKNHS 171 (488)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCGGGSTTTSCHHHHHHHHHHHHHHHHHHHTTGGGTCCSSCC-------C
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhheeEecccccccccCHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccccc
Confidence 45678888899999999999999999999999 677888999999999999999999999999998886554321 113
Q ss_pred cceeccC----------CchhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccCCCCCCCCCCccceee
Q psy4354 81 QKCMVSQ----------DVGYQIFATCSTFYVPLLVILVLYWKIYQTARKRIRRRRQQRNVLMAGKKPDTSDNKTSHFIF 150 (342)
Q Consensus 81 ~~C~~~~----------~~~~~~~~~~~~~~ip~~~i~~~y~~I~~~vr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (342)
..|.... ...|.++.+++.+++|+++++++|++|++.+|++.++.......... ......
T Consensus 172 ~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~ii~~~y~~I~~~l~~~~~~~~~~~~~~~~----------~~~~~~ 241 (488)
T 3eml_A 172 QGCGEGQVACLFEDVVPMNYMVYFNFFACVLVPLLLMLGVYLRIFLAARRQLNIFEMLRIDEGL----------RLKIYK 241 (488)
T ss_dssp CSSCTTCEECCHHHHSCHHHHHTTTHHHHTHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHTCC----------EEEEEE
T ss_pred cccccccceeeccccccchhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhcccccc----------chhhcc
Confidence 4454421 12345556778899999999999999999999876554432110000 000000
Q ss_pred ccccccccccccCCCCCCCCCCCCcccccCCCCCcCCCCCCceeccCCCCCCCCCccccCCCCCCccceeccCCCCCCCC
Q psy4354 151 FKKRKFFRIKKCTNVVPPSPNKLSINVIDEDNGINNATTSSSLILADGHSNSDADRRTSINNEANTAFTITHNNGASQSN 230 (342)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (342)
... .. .....+...+... ..+..................+
T Consensus 242 -----------------------------~~~-------~~-~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~ 281 (488)
T 3eml_A 242 -----------------------------DTE-------GY-YTIGIGHLLTKSP---SLNAAKSELDKAIGRNTNGVIT 281 (488)
T ss_dssp -----------------------------CTT-------SC-EEEETTEEEESSS---CHHHHHHHHHHHHTSCCTTBCC
T ss_pred -----------------------------ccc-------cc-eeccccccCCCCc---cccccccccccCCCCCCCCCCC
Confidence 000 00 0000000000000 0000000000000000000000
Q ss_pred CCcccc--------------------------------------------------------------ccc---cCC---
Q psy4354 231 HNNECV--------------------------------------------------------------QVK---HKI--- 242 (342)
Q Consensus 231 ~~~~~~--------------------------------------------------------------~~~---~~~--- 242 (342)
+.+... +.. ...
T Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 361 (488)
T 3eml_A 282 KDEAEKLFNQDVDAAVRGILRNAKLKPVYDSLDAVRRAALINMVFQMGETGVAGFTNSLRMLQQKRWDEAAVNLAKSRWY 361 (488)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHSCHHHHHHHHHHHHHHCHHHHTTCHHHHHHHHTTCHHHHHHHHTTSHHH
T ss_pred hhhhccCcccCccccccccCCCCCCCCCcCCcchHHHhhhhccccCCCCCCccCCCCcchhhhhccccccccCcccccCc
Confidence 000000 000 000
Q ss_pred --C-----------CCcccchhhHHHHHHhhHHHHHHHHHHHHHHhhhhHHHHHHHHhhcCCC-CchhHHHHHHHHHHhh
Q psy4354 243 --P-----------PTKKEKKESLEAKRERKAAKTLAIITGAFVICWLPFFMMALLLPLCQTC-YISDYLASFFLWLGYF 308 (342)
Q Consensus 243 --~-----------~~~~~~~~~~~~~~~~k~~k~l~~v~~~f~~cw~P~~i~~~~~~~~~~~-~~~~~~~~~~~~l~~~ 308 (342)
. ............++|+|++||+++++++|++||+|+.++.++..+.+.. .....+..++.+|+++
T Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~l~~iv~~F~icw~P~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 441 (488)
T 3eml_A 362 NQTPNRAKRVITTFRTGTWDAYRSTLQKEVHAAKSLAIIVGLFALCWLPLHIINCFTFFCPDCSHAPLWLMYLAIVLSHT 441 (488)
T ss_dssp HHCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTSCCCCHHHHHHHHHHHHH
T ss_pred ccccchhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccCccccccHHHHHHHHHHHHH
Confidence 0 0000011223356899999999999999999999999999998887643 4566778889999999
Q ss_pred cccccchhhhccChhHHHHHHHHHhcCCCCCC
Q psy4354 309 NSTLNPVIYTVFSPEFRQAFKRILCGSPNRGR 340 (342)
Q Consensus 309 ns~vNPiiY~~~n~~fR~~~~~ll~~~~~~~~ 340 (342)
|+++||+||+++|++||++++++|+|++.+++
T Consensus 442 ns~~NPiIY~~~~~~fR~~~~~l~~~~~~~~~ 473 (488)
T 3eml_A 442 NSVVNPFIYAYRIREFRQTFRKIIRSHVLRQQ 473 (488)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHTTSCC-
T ss_pred HhhhchhhhhhcCHHHHHHHHHHHhhcccccC
Confidence 99999999999999999999999987765543
No 6
>3pbl_A D(3) dopamine receptor, lysozyme chimera; structural genomics, PSI-2, PSI-biology, protein structure initiative; HET: ETQ MAL; 2.89A {Homo sapiens}
Probab=100.00 E-value=1.9e-34 Score=268.12 Aligned_cols=283 Identities=29% Similarity=0.469 Sum_probs=176.0
Q ss_pred hhhHHHhhHHHHHhHHHHhhheeeceeEEEee-ccc---ccccchhHHHHHHHHHHHHHHHHHHHhHhcccCCCcccccC
Q psy4354 4 LLFTGVLSHYNVDMLGYSTVIMFVDKYWAVTN-VDY---IHTRNANRIIMMIVVVWSVAFIVSLAPQLGWKDPEYMDRIN 79 (342)
Q Consensus 4 ~~~~~~l~~~~~~~S~~~l~~IaidRY~aI~~-~~y---~~~~t~r~~~~~i~~~W~~s~~~~~p~~~~~~~~~~~~~~~ 79 (342)
+.+.+++..++..+|++++++||+|||+||++ .+| ....+.+++.++++++|++++++++|+++++.... +
T Consensus 112 C~~~~~~~~~~~~~s~~~l~~is~dRy~aI~~P~~~~~~~~~~~~~~~~~~i~~~W~~~~~~~~~~~~~~~~~~-----~ 186 (481)
T 3pbl_A 112 CDVFVTLDVMMCTASIWNLCAISIDRYTAVVMPVHYQHGTGQSSCRRVALMITAVWVLAFAVSCPLLFGFNTTG-----D 186 (481)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHHHHHHTTTCCCS-----S
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHheecccC-----C
Confidence 45667888899999999999999999999999 666 46789999999999999999999999888877532 2
Q ss_pred ccceeccCCchhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccCCCCCCCCCCccceeeccccccccc
Q psy4354 80 QQKCMVSQDVGYQIFATCSTFYVPLLVILVLYWKIYQTARKRIRRRRQQRNVLMAGKKPDTSDNKTSHFIFFKKRKFFRI 159 (342)
Q Consensus 80 ~~~C~~~~~~~~~~~~~~~~~~ip~~~i~~~y~~I~~~vr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (342)
...|... ...|.++..++.+++|+++++++|++|++.+|++.++..............+..
T Consensus 187 ~~~C~~~-~~~~~~~~~~~~~~ip~~ii~~~y~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~------------------ 247 (481)
T 3pbl_A 187 PTVCSIS-NPDFVIYSSVVSFYLPFGVTVLVYARIYVVLKQRRRKNIFEMLRIDEGLRLKIY------------------ 247 (481)
T ss_dssp TTCCSCC-CHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCSSCE------------------
T ss_pred CCccccc-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccccchhccccc------------------
Confidence 4567664 345777888889999999999999999999997654332211100000000000
Q ss_pred cccCCCCCCCCCCCCcccccCCCCCcCCCCCCceeccCCCCCCCCCccccCCCCCCccceeccCCCCCCCCCCcccc---
Q psy4354 160 KKCTNVVPPSPNKLSINVIDEDNGINNATTSSSLILADGHSNSDADRRTSINNEANTAFTITHNNGASQSNHNNECV--- 236 (342)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 236 (342)
.......... .+... ....+...........................
T Consensus 248 --------------------------~~~~~~~~~~-~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (481)
T 3pbl_A 248 --------------------------KDTEGYYTIG-IGHLL---TKSPSLNAAKSELDKAIGRNTNGVITKDEAEKLFN 297 (481)
T ss_dssp --------------------------ECSSSCEEET-TTEEE---ESSSCHHHHHHHHHHHHTSCCTTCCCHHHHHHHHH
T ss_pred --------------------------cCcccceeec-ccccc---cCCcccccCCCcccchhccCCCceeccCCchhccc
Confidence 0000000000 00000 00000000000000000000000000000000
Q ss_pred -----------------------------------------------------ccc------cCCCCCc-ccchhh----
Q psy4354 237 -----------------------------------------------------QVK------HKIPPTK-KEKKES---- 252 (342)
Q Consensus 237 -----------------------------------------------------~~~------~~~~~~~-~~~~~~---- 252 (342)
+.. ....... ......
T Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 377 (481)
T 3pbl_A 298 QDVDAAVRGILRNAKLKPVYDSLDAVRRAALINMVFQMGETGVAGFTNSLRMLQQKRWDEAAVNLAKSRWYNQTPNRAKR 377 (481)
T ss_dssp HHHHHHHHHHHHCTTTHHHHHTSCHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTCHHHHHHHHHTSHHHHHSHHHHHH
T ss_pred CCcccccccccccCccCccccccccccchhccccccccCCCCCCCcccccchhccccccccchhhhccccccCCcccccc
Confidence 000 0000000 000000
Q ss_pred -------------HHHHHHhhHHHHHHHHHHHHHHhhhhHHHHHHHHhhcCCCCchhHHHHHHHHHHhhcccccchhhhc
Q psy4354 253 -------------LEAKRERKAAKTLAIITGAFVICWLPFFMMALLLPLCQTCYISDYLASFFLWLGYFNSTLNPVIYTV 319 (342)
Q Consensus 253 -------------~~~~~~~k~~k~l~~v~~~f~~cw~P~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~vNPiiY~~ 319 (342)
...++|+|++||+++++++|++||+|+.++.++..+.+.......+..++.+|.++|+++||+||++
T Consensus 378 ~~~~~~~~~~~~~~~~~~~~k~~k~l~~iv~~F~icw~P~~i~~~~~~~~~~~~~~~~~~~~~~~L~~~ns~~NPiIY~~ 457 (481)
T 3pbl_A 378 VITTFRTGTWDAYGVPLREKKATQMVAIVLGAFIVCWLPFFLTHVLNTHCQTCHVSPELYSATTWLGYVNSALNPVIYTT 457 (481)
T ss_dssp HHHHHHHSSSTTSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cceeecccccccccccchhhhHHHHHHHHHHHHHHHhhHHHHHHHHHhccccccCcHHHHHHHHHHHHHhhccchHHHHH
Confidence 0013589999999999999999999999999998888776677888899999999999999999999
Q ss_pred cChhHHHHHHHHHhcCCCCCC
Q psy4354 320 FSPEFRQAFKRILCGSPNRGR 340 (342)
Q Consensus 320 ~n~~fR~~~~~ll~~~~~~~~ 340 (342)
+|++||++++++|+|++..++
T Consensus 458 ~~~~fR~~~~~ll~c~~~~~~ 478 (481)
T 3pbl_A 458 FNIEFRKAFLKILSCGRPLEV 478 (481)
T ss_dssp HCHHHHHHHHHHHCC------
T ss_pred cCHHHHHHHHHHHhccCcHHH
Confidence 999999999999987775543
No 7
>4eiy_A Adenosine receptor A2A/soluble cytochrome B562 CH; novel protein engineering, GPCR network, PSI-biology, struct genomics, membrane protein, GPCR; HET: ZMA CLR OLA OLC OLB; 1.80A {Homo sapiens} PDB: 3vg9_A* 3vga_A* 2ydv_A* 2ydo_A* 3uza_A* 3rey_A* 3rfm_A* 3pwh_A* 3uzc_A* 4er9_A
Probab=100.00 E-value=2.1e-34 Score=265.39 Aligned_cols=287 Identities=23% Similarity=0.356 Sum_probs=176.2
Q ss_pred hhhHHHhhHHHHHhHHHHhhheeeceeEEEee-cccccccchhHHHHHHHHHHHHHHHHHHHhHhcccCCCccccc--Cc
Q psy4354 4 LLFTGVLSHYNVDMLGYSTVIMFVDKYWAVTN-VDYIHTRNANRIIMMIVVVWSVAFIVSLAPQLGWKDPEYMDRI--NQ 80 (342)
Q Consensus 4 ~~~~~~l~~~~~~~S~~~l~~IaidRY~aI~~-~~y~~~~t~r~~~~~i~~~W~~s~~~~~p~~~~~~~~~~~~~~--~~ 80 (342)
+.+.+++..++..+|++++++||+|||+||++ .+|...++++++.++++++|++++++++|++++|......... ..
T Consensus 102 C~~~~~~~~~~~~~S~~~l~~is~dRy~aI~~P~~~~~~~~~~~~~~~i~~~Wi~s~~~~~~~~~~~~~~~~~~~~~~~~ 181 (447)
T 4eiy_A 102 CLFIACFVLVLTQSSIFSLLAIAIDRYIAIRIPLRYNGLVTGTRAKGIIAICWVLSFAIGLTPMLGWNNCGQPKEGKNHS 181 (447)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHSCHHHHHHHHHHHHHHHHHHHTGGGGTCSSTTSCCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHeEEecccccchhhhHHHHHHHHhHHHHHHHHHHHhhhheeccccccCcccccc
Confidence 44677888899999999999999999999999 6778889999999999999999999999999988865543211 12
Q ss_pred cceecc----------CCchhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccCCCCCCCCCCccceee
Q psy4354 81 QKCMVS----------QDVGYQIFATCSTFYVPLLVILVLYWKIYQTARKRIRRRRQQRNVLMAGKKPDTSDNKTSHFIF 150 (342)
Q Consensus 81 ~~C~~~----------~~~~~~~~~~~~~~~ip~~~i~~~y~~I~~~vr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (342)
..|... ....+.++.+++.+++|+++++++|++|++.+|++.++..........+...........
T Consensus 182 ~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~lP~~ii~~~y~~I~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 257 (447)
T 4eiy_A 182 QGCGEGQVACLFEDVVPMNYMVYFNFFACVLVPLLLMLGVYLRIFLAARRQLADLEDNWETLNDNLKVIEKADNAA---- 257 (447)
T ss_dssp TTCCTTEEECCHHHHSCHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCSHH----
T ss_pred ccccccchhhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHhccCcCcCCccccch----
Confidence 334332 112233333456789999999999999999999988776542211100000000000000
Q ss_pred ccccccccccccCCCCCCCCCCCCcccccCCCCCcCCCCCCceeccCCCCCCCCCccccCCCCCCccceeccCCCCCCCC
Q psy4354 151 FKKRKFFRIKKCTNVVPPSPNKLSINVIDEDNGINNATTSSSLILADGHSNSDADRRTSINNEANTAFTITHNNGASQSN 230 (342)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (342)
...+.. ................ . ....++.+...
T Consensus 258 -------------------------~~~~~~----------~~~~~~~~~~~~~~~~---~--------~~~~~~~~~~~ 291 (447)
T 4eiy_A 258 -------------------------QVKDAL----------TKMRAAALDAQKATPP---K--------LEDKSPDSPEM 291 (447)
T ss_dssp -------------------------HHHHHH----------HHHHHHHHHHHC--------------------------C
T ss_pred -------------------------hhhccc----------hhhhccCCCCCCCCCC---C--------CcCCCCCCccc
Confidence 000000 0000000000000000 0 00000000000
Q ss_pred CCccc------------------------ccc------ccCCCCCcccchhhHHHHHHhhHHHHHHHHHHHHHHhhhhHH
Q psy4354 231 HNNEC------------------------VQV------KHKIPPTKKEKKESLEAKRERKAAKTLAIITGAFVICWLPFF 280 (342)
Q Consensus 231 ~~~~~------------------------~~~------~~~~~~~~~~~~~~~~~~~~~k~~k~l~~v~~~f~~cw~P~~ 280 (342)
..... .+. .............+...++|+|++||+++++++|++||+|+.
T Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~k~l~~vv~~F~icw~P~~ 371 (447)
T 4eiy_A 292 KDFRHGFDILVGQIDDALKLANEGKVKEAQAAAEQLKTTRNAYIQKYLERARSTLQKEVHAAKSLAIIVGLFALCWLPLH 371 (447)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccCCCCCCCCccchhhhhcccCCcCcccchhhhhcccccchhhccccchhHHHHHHHHHHHHHHHhhhhhheeccHHH
Confidence 00000 000 000000001122233457899999999999999999999999
Q ss_pred HHHHHHhhcCC-CCchhHHHHHHHHHHhhcccccchhhhccChhHHHHHHHHHhcCCCCCC
Q psy4354 281 MMALLLPLCQT-CYISDYLASFFLWLGYFNSTLNPVIYTVFSPEFRQAFKRILCGSPNRGR 340 (342)
Q Consensus 281 i~~~~~~~~~~-~~~~~~~~~~~~~l~~~ns~vNPiiY~~~n~~fR~~~~~ll~~~~~~~~ 340 (342)
++.++..+.+. .....++..++.+|.++|+++||+||+++|++||++++++|+|++++++
T Consensus 372 i~~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~~NPiIY~~~~~~fR~~~~~~~~~~~~r~~ 432 (447)
T 4eiy_A 372 IINCFTFFCPDCSHAPLWLMYLAIVLSHTNSVVNPFIYAYRIREFRQTFRKIIRSHVLRQQ 432 (447)
T ss_dssp HHHHHHHHCTTSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTC----
T ss_pred HHHHHHHhcCcccccchHHHHHHHHHHHHHhccchhhhHhccHHHHHHHHHHHHHHHhccC
Confidence 99999888654 3456677888999999999999999999999999999999987776543
No 8
>3rze_A Histamine H1 receptor, lysozyme chimera; structural genomics, PSI-biology, membrane protein, GPCR NET GPCR, hydrolase; HET: 5EH D7V OLC; 3.10A {Homo sapiens}
Probab=100.00 E-value=1.5e-34 Score=266.70 Aligned_cols=122 Identities=24% Similarity=0.454 Sum_probs=97.5
Q ss_pred hhhHHHhhHHHHHhHHHHhhheeeceeEEEee-cccccccchhHHHHHHHHHHHHHHHHHHHhHhcccCCCccc-ccCcc
Q psy4354 4 LLFTGVLSHYNVDMLGYSTVIMFVDKYWAVTN-VDYIHTRNANRIIMMIVVVWSVAFIVSLAPQLGWKDPEYMD-RINQQ 81 (342)
Q Consensus 4 ~~~~~~l~~~~~~~S~~~l~~IaidRY~aI~~-~~y~~~~t~r~~~~~i~~~W~~s~~~~~p~~~~~~~~~~~~-~~~~~ 81 (342)
+.+.+++..++..+|++++++||+|||+||++ .+|...++++++.++++++|++++++++ |.++|..+.... .....
T Consensus 81 C~~~~~~~~~~~~~s~~~l~~is~dRy~aI~~P~~~~~~~~~~~~~~~i~~~W~~~~~~~~-p~~~~~~~~~~~~~~~~~ 159 (452)
T 3rze_A 81 CLFWLSMDYVASTASIFSVFILCIDRYRSVQQPLRYLKYRTKTRASATILGAWFLSFLWVI-PILGWNHFMQQTSVRRED 159 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSCCTTTTSSHHHHHHHHHHHHHHHGGGHH-HHHCCCC-------CCSS
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHheeCccccccccchhHHHHHHHHHHHHHHHHHH-HHHHHHhcccccccCCCC
Confidence 45678888999999999999999999999999 6788889999999999999999999988 566666544322 12355
Q ss_pred ceecc--CCchhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy4354 82 KCMVS--QDVGYQIFATCSTFYVPLLVILVLYWKIYQTARKRIRRRR 126 (342)
Q Consensus 82 ~C~~~--~~~~~~~~~~~~~~~ip~~~i~~~y~~I~~~vr~~~~~~~ 126 (342)
.|..+ ....|.++..++.+++|+++++++|++|++.+|++.++..
T Consensus 160 ~C~~~~~~~~~~~~~~~~~~~~~p~~ii~~~y~~I~~~l~~~~~~~~ 206 (452)
T 3rze_A 160 KCETDFYDVTWFKVMTAIINFYLPTLLMLWFYAKIYKAVRQHCNIFE 206 (452)
T ss_dssp SSCCSCTTCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHSCCCCCHHH
T ss_pred eecCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHH
Confidence 67553 3455777888899999999999999999999987655433
No 9
>3v2y_A Sphingosine 1-phosphate receptor 1, lysozyme CHIM; EDG receptor, lipid receptor, multiple sclerosi autoimmunity, structural genomics, PSI-biology; HET: ML5 NAG; 2.80A {Homo sapiens} PDB: 3v2w_A*
Probab=100.00 E-value=6.5e-34 Score=267.14 Aligned_cols=113 Identities=20% Similarity=0.433 Sum_probs=89.1
Q ss_pred hhhHHHhhHHHHHhHHHHhhheeeceeEEEeecccccccchhHHHHHHHHHHHHHHHHHHHhHhcccCCCcccccCccce
Q psy4354 4 LLFTGVLSHYNVDMLGYSTVIMFVDKYWAVTNVDYIHTRNANRIIMMIVVVWSVAFIVSLAPQLGWKDPEYMDRINQQKC 83 (342)
Q Consensus 4 ~~~~~~l~~~~~~~S~~~l~~IaidRY~aI~~~~y~~~~t~r~~~~~i~~~W~~s~~~~~p~~~~~~~~~~~~~~~~~~C 83 (342)
+.+..++..++.++|++++++||+|||+||+.++|...++++++.++++++|++++++++||+++|..+. +...|
T Consensus 135 c~~~~~~~~~~~~~S~~~l~~isidRy~aI~p~~~~~~~t~~~~~~~i~~~W~~s~~~~~~~~~~~~~~~-----~~~~C 209 (520)
T 3v2y_A 135 WFLREGSMFVALSASVFSLLAIAIERYITMLKMKLHNGSNNFRLFLLISACWVISLILGGLPIMGWNCIS-----ALSSC 209 (520)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-------CCHHHHHHHHHHHHHHHHHHHTTTTTCBCTT-----CGGGB
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHhhEEeccccccccchhHHHHHHHHHHHHHHHHHHHHHHeecccc-----CCCcc
Confidence 4456788888999999999999999999999446677899999999999999999999999999988652 24578
Q ss_pred eccC---CchhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q psy4354 84 MVSQ---DVGYQIFATCSTFYVPLLVILVLYWKIYQTARKRI 122 (342)
Q Consensus 84 ~~~~---~~~~~~~~~~~~~~ip~~~i~~~y~~I~~~vr~~~ 122 (342)
...+ ...|.++ .++.|++|+++|++||++|++.+|++.
T Consensus 210 ~~~~~~~~~~~~~~-~~~~~~lPl~ii~~~Y~~I~~~l~~~~ 250 (520)
T 3v2y_A 210 STVLPLYHKHYILF-CTTVFTLLLLSIVILYCRIYSLVRTRN 250 (520)
T ss_dssp CSSSTTBBHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCCccchHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 7653 2334443 455799999999999999999999886
No 10
>2z73_A Rhodopsin; visual pigment, GQ-type, G-protein coupled receptor, chromophore, glycoprotein, lipoprotein, membrane, palmitate phosphorylation; HET: BOG RET PLM TWT PC1; 2.50A {Todarodes pacificus} PDB: 3aym_A* 3ayn_A* 2ziy_A*
Probab=100.00 E-value=1.1e-32 Score=254.31 Aligned_cols=217 Identities=20% Similarity=0.356 Sum_probs=173.1
Q ss_pred hhhHHHhhHHHHHhHHHHhhheeeceeEEEee-cccccccchhHHHHHHHHHHHHHHHHHHHhHhcccCCCcccccCccc
Q psy4354 4 LLFTGVLSHYNVDMLGYSTVIMFVDKYWAVTN-VDYIHTRNANRIIMMIVVVWSVAFIVSLAPQLGWKDPEYMDRINQQK 82 (342)
Q Consensus 4 ~~~~~~l~~~~~~~S~~~l~~IaidRY~aI~~-~~y~~~~t~r~~~~~i~~~W~~s~~~~~p~~~~~~~~~~~~~~~~~~ 82 (342)
+.+.+++..++..+|++++++||+|||+||++ .+|...++++++.++++++|+++++++++++++|+...... ....
T Consensus 108 C~~~~~~~~~~~~~S~~~l~~isidRy~aI~~P~~~~~~~~~~~~~~~i~~~W~~s~~~~~~~~~~~~~~~~~~--~~~~ 185 (448)
T 2z73_A 108 CKVYGFIGGIFGFMSIMTMAMISIDRYNVIGRPMAASKKMSHRRAFIMIIFVWLWSVLWAIGPIFGWGAYTLEG--VLCN 185 (448)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTCCCCCHHHHHHHHHHHHHHHHHHHSGGGGTSSCEEECT--TSSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccceechhHHHHHHHHHHHHHHHHHHHHHhceeeeeecC--Ccee
Confidence 44567788889999999999999999999999 77888899999999999999999999999998887644333 2556
Q ss_pred eeccCC------chhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccCCCCCCCCCCccceeecccccc
Q psy4354 83 CMVSQD------VGYQIFATCSTFYVPLLVILVLYWKIYQTARKRIRRRRQQRNVLMAGKKPDTSDNKTSHFIFFKKRKF 156 (342)
Q Consensus 83 C~~~~~------~~~~~~~~~~~~~ip~~~i~~~y~~I~~~vr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (342)
|...+. ..|.++..++.+++|+++++++|++|++.+|++.++........
T Consensus 186 c~~~~~~~~~~~~~~~~~~~~~~~~lP~~ii~~~y~~I~~~l~~~~~~~~~~~~~~------------------------ 241 (448)
T 2z73_A 186 CSFDYISRDSTTRSNILCMFILGFFGPILIIFFCYFNIVMSVSNHEKEMAAMAKRL------------------------ 241 (448)
T ss_dssp EEECCSCCSHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHTTHHHHHHHHHHHHTTT------------------------
T ss_pred EecccccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh------------------------
Confidence 766421 24555666777899999999999999999999887765521100
Q ss_pred ccccccCCCCCCCCCCCCcccccCCCCCcCCCCCCceeccCCCCCCCCCccccCCCCCCccceeccCCCCCCCCCCcccc
Q psy4354 157 FRIKKCTNVVPPSPNKLSINVIDEDNGINNATTSSSLILADGHSNSDADRRTSINNEANTAFTITHNNGASQSNHNNECV 236 (342)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (342)
T Consensus 242 -------------------------------------------------------------------------------- 241 (448)
T 2z73_A 242 -------------------------------------------------------------------------------- 241 (448)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccCCCCCcccchhhHHHHHHhhHHHHHHHHHHHHHHhhhhHHHHHHHHhhcCCCCchhHHHHHHHHHHhhcccccchh
Q psy4354 237 QVKHKIPPTKKEKKESLEAKRERKAAKTLAIITGAFVICWLPFFMMALLLPLCQTCYISDYLASFFLWLGYFNSTLNPVI 316 (342)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~k~~k~l~~v~~~f~~cw~P~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~vNPii 316 (342)
.....++.....++|+|++|++++++++|++||+|+.++.++..+............+..++.++|+++||+|
T Consensus 242 -------~~~~~~~~~~~~~~~~k~~~~l~~iv~~F~i~~~P~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~~NPiI 314 (448)
T 2z73_A 242 -------NAKELRKAQAGANAEMRLAKISIVIVSQFLLSWSPYAVVALLAQFGPLEWVTPYAAQLPVMFAKASAIHNPMI 314 (448)
T ss_dssp -------CCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCGGGCCHHHHHHHHHHHHHGGGSHHHH
T ss_pred -------hhHHHHhhhccccHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCcccCChHHHHHHHHHHHHHHhhcchH
Confidence 0001112223446789999999999999999999999999887776543345667778889999999999999
Q ss_pred hhccChhHHHHHHHHHh
Q psy4354 317 YTVFSPEFRQAFKRILC 333 (342)
Q Consensus 317 Y~~~n~~fR~~~~~ll~ 333 (342)
|+++|++||++++++|+
T Consensus 315 Y~~~~~~fR~~~~~~~~ 331 (448)
T 2z73_A 315 YSVSHPKFREAISQTFP 331 (448)
T ss_dssp HHHHCHHHHHHHHHHCG
T ss_pred HHHhhHHHHHHHHHHHH
Confidence 99999999999999984
No 11
>4amj_A Beta-1 adrenergic receptor; membrane protein, 7TMR BETA1-adrenoceptor, stabilising mutat biased agonist; HET: CVD 2CV; 2.30A {Meleagris gallopavo} PDB: 2y01_A* 2y02_A* 2y03_A* 2y04_A* 4ami_A* 2y00_A* 2vt4_A* 2ycw_A* 2ycx_A* 2ycy_A* 2ycz_A*
Probab=100.00 E-value=3.2e-33 Score=245.41 Aligned_cols=215 Identities=32% Similarity=0.579 Sum_probs=163.8
Q ss_pred hhhHHHhhHHHHHhHHHHhhheeeceeEEEee-cccccccchhHHHHHHHHHHHHHHHHHHHhHhcccCCCcccccCccc
Q psy4354 4 LLFTGVLSHYNVDMLGYSTVIMFVDKYWAVTN-VDYIHTRNANRIIMMIVVVWSVAFIVSLAPQLGWKDPEYMDRINQQK 82 (342)
Q Consensus 4 ~~~~~~l~~~~~~~S~~~l~~IaidRY~aI~~-~~y~~~~t~r~~~~~i~~~W~~s~~~~~p~~~~~~~~~~~~~~~~~~ 82 (342)
+-+.+++..++..+|++++++||+|||+||++ .+|+..++++++..+++++|++++++++||++.........+ ...
T Consensus 84 C~~~~~~~~~~~~~S~~~l~~isidRy~aI~~P~~~~~~~~~~~~~~~i~~~W~~~~~~~~~~~~~~~~~~~~~~--~~~ 161 (315)
T 4amj_A 84 CELWTSLDVLCVTASIETLCVIAIDRYLAITSPFRYQSLMTRARAKVIICTVWAISALVSFLPIMMHWWRDEDPQ--ALK 161 (315)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHTTTTCCCSHH--HHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccchhhHHHhhhHHHHHHHHHHHHHHHHHhccccCCC--ccc
Confidence 34567888899999999999999999999999 677778899999999999999999999888876543332221 222
Q ss_pred e-------eccCCchhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccCCCCCCCCCCccceeeccccc
Q psy4354 83 C-------MVSQDVGYQIFATCSTFYVPLLVILVLYWKIYQTARKRIRRRRQQRNVLMAGKKPDTSDNKTSHFIFFKKRK 155 (342)
Q Consensus 83 C-------~~~~~~~~~~~~~~~~~~ip~~~i~~~y~~I~~~vr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (342)
| .......|.+...++.+++|+++++++|.+|++.+|++.++.....
T Consensus 162 c~~~~~~~~~~~~~~~~~~~~~~~~~ip~~ii~~~y~~i~~~~~~~~~~~~~~~-------------------------- 215 (315)
T 4amj_A 162 CYQDPGCCDFVTNRAYAIASSIISFYIPLLIMIFVALRVYREAKEQIRKIDRAS-------------------------- 215 (315)
T ss_dssp HHHCTTCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHTC----------------------------------
T ss_pred cccccccchhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccc--------------------------
Confidence 3 2234556777777888899999999999999999998654333200
Q ss_pred cccccccCCCCCCCCCCCCcccccCCCCCcCCCCCCceeccCCCCCCCCCccccCCCCCCccceeccCCCCCCCCCCccc
Q psy4354 156 FFRIKKCTNVVPPSPNKLSINVIDEDNGINNATTSSSLILADGHSNSDADRRTSINNEANTAFTITHNNGASQSNHNNEC 235 (342)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (342)
T Consensus 216 -------------------------------------------------------------------------------- 215 (315)
T 4amj_A 216 -------------------------------------------------------------------------------- 215 (315)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccCCCCCcccchhhHHHHHHhhHHHHHHHHHHHHHHhhhhHHHHHHHHhhcCCCCchhHHHHHHHHHHhhcccccch
Q psy4354 236 VQVKHKIPPTKKEKKESLEAKRERKAAKTLAIITGAFVICWLPFFMMALLLPLCQTCYISDYLASFFLWLGYFNSTLNPV 315 (342)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~k~~k~l~~v~~~f~~cw~P~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~vNPi 315 (342)
.++..+...++|+|+++++++++++|++||+|+.+..++..+.++. .......+..++.++|+++||+
T Consensus 216 -----------~~~~~~~~~~~~~k~~~~~~~~~~~f~i~~~P~~i~~~~~~~~~~~-~~~~~~~~~~~l~~~ns~~nPi 283 (315)
T 4amj_A 216 -----------KRKTSRVMLMREHKALKTLGIIMGVFTLCWLPFFLVNIVNVFNRDL-VPDWLFVAFNWLGYANSAMNPI 283 (315)
T ss_dssp ---------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTS-SCHHHHHHHHHHHHHGGGTHHH
T ss_pred -----------ccccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHHhccccHH
Confidence 0011122446789999999999999999999999999988776543 4566777888899999999999
Q ss_pred hhhccChhHHHHHHHHHhcCCCCC
Q psy4354 316 IYTVFSPEFRQAFKRILCGSPNRG 339 (342)
Q Consensus 316 iY~~~n~~fR~~~~~ll~~~~~~~ 339 (342)
+|+ +|++||++++++|+|++.+.
T Consensus 284 iY~-~~~~fR~~~~~~l~~~~~~~ 306 (315)
T 4amj_A 284 IYC-RSPDFRKAFKRLLAFPRKAD 306 (315)
T ss_dssp HGG-GSHHHHHHHHHHHC------
T ss_pred HHc-CcHHHHHHHHHHhCCCCcch
Confidence 999 99999999999998876554
No 12
>3odu_A C-X-C chemokine receptor type 4, lysozyme chimera; structural genomics, PSI-2, protein structure initiative; HET: ITD OLC OLA; 2.50A {Homo sapiens} PDB: 3oe8_A* 3oe6_A* 3oe0_A* 3oe9_A* 2k03_B* 2k04_B 2k05_B*
Probab=100.00 E-value=8.4e-35 Score=272.01 Aligned_cols=121 Identities=17% Similarity=0.135 Sum_probs=98.5
Q ss_pred hhhHHHhhHHHHHhHHHHhhheeeceeEEEee-cccccccchhHHHHHHHHHHHHHHHHHHHhHhcccCCCcccccCccc
Q psy4354 4 LLFTGVLSHYNVDMLGYSTVIMFVDKYWAVTN-VDYIHTRNANRIIMMIVVVWSVAFIVSLAPQLGWKDPEYMDRINQQK 82 (342)
Q Consensus 4 ~~~~~~l~~~~~~~S~~~l~~IaidRY~aI~~-~~y~~~~t~r~~~~~i~~~W~~s~~~~~p~~~~~~~~~~~~~~~~~~ 82 (342)
+.+.+++..++..+|++++++||+|||+||++ .+|...++++++.++++++|++++++++|+++.+..... .+...
T Consensus 119 C~~~~~~~~~~~~~s~~~l~~is~dRy~ai~~P~~~~~~~~~~~~~~~i~~~W~~~~~~~~~~~~~~~~~~~---~~~~~ 195 (502)
T 3odu_A 119 CKAVHVIYTVNLYSSVWILAFISLDRYLAIVHATNSQRPRKLLAEKVVYVGVWIPALLLTIPDFIFANVSEA---DDRYI 195 (502)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHTHHHHHTHHHHHHTTHHHHHHEEEEEC---SSSEE
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHhheecccccccccchhHHHHhhhHHHHHHHHHHHHHHHheeeecc---CCceE
Confidence 55678889999999999999999999999999 678888899999999999999999999988776553222 12566
Q ss_pred eeccCC-----chhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy4354 83 CMVSQD-----VGYQIFATCSTFYVPLLVILVLYWKIYQTARKRIRRRRQ 127 (342)
Q Consensus 83 C~~~~~-----~~~~~~~~~~~~~ip~~~i~~~y~~I~~~vr~~~~~~~~ 127 (342)
|...+. ..|.++..++.+++|+++++++|++|++.+|++.++...
T Consensus 196 C~~~~~~~~~~~~~~~~~~~~~~~~p~~ii~~~y~~I~~~l~~~~~~~~~ 245 (502)
T 3odu_A 196 CDRFYPNDLWVVVFQFQHIMVGLILPGIVILSCYCIIISKLSHSGSNIFE 245 (502)
T ss_dssp EEECCSSHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHGGGCSCCHHH
T ss_pred EeecCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhh
Confidence 875433 235566677889999999999999999999986655443
No 13
>4dkl_A MU-type opioid receptor, lysozyme chimera; G-protein coupled receptor, 7 transmembrane receptor, signal protein-antagonist complex; HET: BF0 CLR MPG 1PE; 2.80A {Mus musculus} PDB: 4ej4_A* 4djh_A*
Probab=100.00 E-value=1.3e-33 Score=261.24 Aligned_cols=121 Identities=18% Similarity=0.217 Sum_probs=97.3
Q ss_pred hhhHHHhhHHHHHhHHHHhhheeeceeEEEee-cccccccchhHHHHHHHHHHHHHHHHHHHhHhcccCCCcccccCccc
Q psy4354 4 LLFTGVLSHYNVDMLGYSTVIMFVDKYWAVTN-VDYIHTRNANRIIMMIVVVWSVAFIVSLAPQLGWKDPEYMDRINQQK 82 (342)
Q Consensus 4 ~~~~~~l~~~~~~~S~~~l~~IaidRY~aI~~-~~y~~~~t~r~~~~~i~~~W~~s~~~~~p~~~~~~~~~~~~~~~~~~ 82 (342)
+.+.+++..++..+|++++++||+|||+||++ .+|...++++++.++++++|++++++++|+++.+.. .+.. +...
T Consensus 89 C~~~~~~~~~~~~~s~~~l~~is~dRy~aI~~P~~~~~~~~~~~~~~~~~~~W~~~~~~~~p~~~~~~~-~~~~--~~~~ 165 (464)
T 4dkl_A 89 CKIVISIDYYNMFTSIFTLCTMSVDRYIAVCHPVKALDFRTPRNAKIVNVCNWILSSAIGLPVMFMATT-KYRQ--GSID 165 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHSBCC-EEET--TEEE
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccHhHHhHHHHHHHHHHHHHHHHHheee-cccC--CCce
Confidence 45678889999999999999999999999999 678788899999999999999999999977764443 2222 2455
Q ss_pred eeccCC-------chhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy4354 83 CMVSQD-------VGYQIFATCSTFYVPLLVILVLYWKIYQTARKRIRRRRQ 127 (342)
Q Consensus 83 C~~~~~-------~~~~~~~~~~~~~ip~~~i~~~y~~I~~~vr~~~~~~~~ 127 (342)
|..... ..|.++.+++.+++|+++++++|++|++.+|++.+....
T Consensus 166 c~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ii~~~y~~i~~~l~~~~~~~~~ 217 (464)
T 4dkl_A 166 CTLTFSHPTWYWENLLKICVFIFAFIMPVLIITVCYGLMILRLKSVRNIFEM 217 (464)
T ss_dssp CCBCCSSSHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHCCCCCSHHHH
T ss_pred EEeecCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhh
Confidence 665422 235667778889999999999999999999876554443
No 14
>1u19_A Rhodopsin; G protein-coupled receptor, membrane protein, retinal protei photoreceptor, signaling protein; HET: MAN NAG BMA RET PLM HTO HTG; 2.20A {Bos taurus} SCOP: f.13.1.2 PDB: 1hzx_A* 1gzm_A* 1l9h_A* 2g87_A* 2hpy_A* 2i35_A* 2i36_A* 2i37_A* 2ped_A* 3oax_A* 3c9l_A* 1jfp_A* 1ln6_A* 1f88_A* 3cap_A* 3dqb_A* 3pqr_A* 3pxo_A* 3c9m_A* 2x72_A* ...
Probab=100.00 E-value=2.5e-33 Score=249.80 Aligned_cols=210 Identities=21% Similarity=0.424 Sum_probs=168.3
Q ss_pred hhhHHHhhHHHHHhHHHHhhheeeceeEEEeec-ccccccchhHHHHHHHHHHHHHHHHHHHhHhcccCCCcccccCccc
Q psy4354 4 LLFTGVLSHYNVDMLGYSTVIMFVDKYWAVTNV-DYIHTRNANRIIMMIVVVWSVAFIVSLAPQLGWKDPEYMDRINQQK 82 (342)
Q Consensus 4 ~~~~~~l~~~~~~~S~~~l~~IaidRY~aI~~~-~y~~~~t~r~~~~~i~~~W~~s~~~~~p~~~~~~~~~~~~~~~~~~ 82 (342)
+.+.+++..++..+|++++++||+|||+||++| +|+ .++++++..+++++|++++++++|++++|..+.... ....
T Consensus 111 C~~~~~~~~~~~~~s~~~l~~isidRy~aI~~P~~~~-~~~~~~~~~~i~~~W~~~~~~~~~~~~~~~~~~~~~--~~~~ 187 (349)
T 1u19_A 111 CNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNF-RFGENHAIMGVAFTWVMALACAAPPLVGWSRYIPEG--MQCS 187 (349)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCSSSC-CCCHHHHHHHHHHHHHHHHHHHSGGGTTSSCCEEET--TTTE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHheeeCCccce-eeccchhHHHHHHHHHHHHHHHHHHHHheeeeeccC--Ccee
Confidence 345678888899999999999999999999994 554 489999999999999999999999998887543322 2556
Q ss_pred eeccC--------CchhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccCCCCCCCCCCccceeecccc
Q psy4354 83 CMVSQ--------DVGYQIFATCSTFYVPLLVILVLYWKIYQTARKRIRRRRQQRNVLMAGKKPDTSDNKTSHFIFFKKR 154 (342)
Q Consensus 83 C~~~~--------~~~~~~~~~~~~~~ip~~~i~~~y~~I~~~vr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (342)
|...+ ...|.++..++.+++|+++++++|.+|++.+|++.++.
T Consensus 188 C~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~ii~~~y~~i~~~l~~~~~~~----------------------------- 238 (349)
T 1u19_A 188 CGIDYYTPHEETNNESFVIYMFVVHFIIPLIVIFFCYGQLVFTVKEAAAQQ----------------------------- 238 (349)
T ss_dssp EECCCSCCCGGGTHHHHHHHHHHHTTHHHHHHHHHHHTTTTTSSCSCCCSS-----------------------------
T ss_pred ecccccCccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh-----------------------------
Confidence 76542 23466677778889999999999999998877532100
Q ss_pred ccccccccCCCCCCCCCCCCcccccCCCCCcCCCCCCceeccCCCCCCCCCccccCCCCCCccceeccCCCCCCCCCCcc
Q psy4354 155 KFFRIKKCTNVVPPSPNKLSINVIDEDNGINNATTSSSLILADGHSNSDADRRTSINNEANTAFTITHNNGASQSNHNNE 234 (342)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (342)
T Consensus 239 -------------------------------------------------------------------------------- 238 (349)
T 1u19_A 239 -------------------------------------------------------------------------------- 238 (349)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccccCCCCCcccchhhHHHHHHhhHHHHHHHHHHHHHHhhhhHHHHHHHHhhcCCCCchhHHHHHHHHHHhhcccccc
Q psy4354 235 CVQVKHKIPPTKKEKKESLEAKRERKAAKTLAIITGAFVICWLPFFMMALLLPLCQTCYISDYLASFFLWLGYFNSTLNP 314 (342)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~k~~k~l~~v~~~f~~cw~P~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~vNP 314 (342)
+..+...++++|++|++++++++|++||+|+.+..++..+.+..........+..++.++|+++||
T Consensus 239 --------------~~~~~~~~~~~~~~~~~~~i~~~f~i~~~P~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~~nP 304 (349)
T 1u19_A 239 --------------QESATTQKAEKEVTRMVIIMVIAFLICWLPYAGVAFYIFTHQGSDFGPIFMTIPAFFAKTSAVYNP 304 (349)
T ss_dssp --------------CSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSCCCHHHHHHHHHHGGGGGTHHH
T ss_pred --------------ccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhheecCCcccchHHHHHHHHHHHHHHHHhH
Confidence 000113466789999999999999999999999988877765555566677788899999999999
Q ss_pred hhhhccChhHHHHHHHHHhcCCCCC
Q psy4354 315 VIYTVFSPEFRQAFKRILCGSPNRG 339 (342)
Q Consensus 315 iiY~~~n~~fR~~~~~ll~~~~~~~ 339 (342)
+||+++|++||+++++++||++++.
T Consensus 305 iiY~~~~~~fR~~~~~~~~c~~~~~ 329 (349)
T 1u19_A 305 VIYIMMNKQFRNCMVTTLCCGKNPL 329 (349)
T ss_dssp HHHHHTCHHHHHHHHHHHTSSCCCT
T ss_pred HHHHHHhHHHHHHHHHHhcccCCCC
Confidence 9999999999999999998776543
No 15
>3sn6_R Lysozyme, beta-2 adrenergic receptor; seven transmembrane receptor, nanobody, G protein-coupled RE GPCR, signal transduction, G protein signaling; HET: P0G; 3.20A {Enterobacteria phage T4} PDB: 3kj6_A 2r4s_A 2r4r_A 4gbr_A*
Probab=99.98 E-value=1.4e-32 Score=257.81 Aligned_cols=235 Identities=28% Similarity=0.545 Sum_probs=166.4
Q ss_pred hhhHHHhhHHHHHhHHHHhhheeeceeEEEee-cccccccchhHHHHHHHHHHHHHHHHHHHhHh-cccCCCccccc---
Q psy4354 4 LLFTGVLSHYNVDMLGYSTVIMFVDKYWAVTN-VDYIHTRNANRIIMMIVVVWSVAFIVSLAPQL-GWKDPEYMDRI--- 78 (342)
Q Consensus 4 ~~~~~~l~~~~~~~S~~~l~~IaidRY~aI~~-~~y~~~~t~r~~~~~i~~~W~~s~~~~~p~~~-~~~~~~~~~~~--- 78 (342)
+-+.+++..++..+|++++++||+|||+||++ .+|+..++++++.++++++|+++++++++|++ .|.........
T Consensus 255 C~~~~~l~~~~~~~S~~~l~~isidRy~aI~~Pl~~~~~~t~~~~~~~i~~~Wi~s~l~~~~p~~~~~~~~~~~~~~~c~ 334 (514)
T 3sn6_R 255 CEFWTSIDVLCVTASIETLCVIAVDRYFAITSPFKYQSLLTKNKARVIILMVWIVSGLTSFLPIQMHWYRATHQEAINCY 334 (514)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHCCHHHHHHHHHHHHHHHHHTTHHHHHTTTTC---CHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccchhccchHHHHHHHHHHHHHHHHHhhhhhccceecccCccccee
Confidence 45667888899999999999999999999999 67778899999999999999999998876664 44433221110
Q ss_pred Cccce-eccCCchhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccCCCCCCCCCCccceeeccccccc
Q psy4354 79 NQQKC-MVSQDVGYQIFATCSTFYVPLLVILVLYWKIYQTARKRIRRRRQQRNVLMAGKKPDTSDNKTSHFIFFKKRKFF 157 (342)
Q Consensus 79 ~~~~C-~~~~~~~~~~~~~~~~~~ip~~~i~~~y~~I~~~vr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (342)
....| .......|.++..++.+++|+++++++|.+|++.+|++.++...........
T Consensus 335 ~~~~~~~~~~~~~y~~~~~~~~~~lP~~ii~~~y~~I~~~l~~~~~~~~~~~~~~~~~---------------------- 392 (514)
T 3sn6_R 335 AEETCCDFFTNQAYAIASSIVSFYVPLVIMVFVYSRVFQEAKRQLQKIDKSEGRFHVQ---------------------- 392 (514)
T ss_dssp HSSSCCCCCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC--------------------------
T ss_pred ecccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccc----------------------
Confidence 01122 2234567888888999999999999999999999999887766521100000
Q ss_pred cccccCCCCCCCCCCCCcccccCCCCCcCCCCCCceeccCCCCCCCCCccccCCCCCCccceeccCCCCCCCCCCccccc
Q psy4354 158 RIKKCTNVVPPSPNKLSINVIDEDNGINNATTSSSLILADGHSNSDADRRTSINNEANTAFTITHNNGASQSNHNNECVQ 237 (342)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (342)
+..+
T Consensus 393 ----------------------------------------------------------------------------~~~~ 396 (514)
T 3sn6_R 393 ----------------------------------------------------------------------------NLSQ 396 (514)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ----------------------------------------------------------------------------cccc
Confidence 0000
Q ss_pred cccCCCCCcccchhhHHHHHHhhHHHHHHHHHHHHHHhhhhHHHHHHHHhhcCCCCchhHHHHHHHHHHhhcccccchhh
Q psy4354 238 VKHKIPPTKKEKKESLEAKRERKAAKTLAIITGAFVICWLPFFMMALLLPLCQTCYISDYLASFFLWLGYFNSTLNPVIY 317 (342)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~k~~k~l~~v~~~f~~cw~P~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~vNPiiY 317 (342)
...........++..+..++++|+++++++++++|++||+|+.++.++..+.+. .....+..+..+|.++|+++||+||
T Consensus 397 ~~~~~~~~~~~~~~~~~~~~~~r~~~~l~~iv~~F~lcwlP~~i~~~~~~~~~~-~~~~~~~~~~~~l~~~ns~~NPiIY 475 (514)
T 3sn6_R 397 VEQDGRTGHGLRRSSKFCLKEHKALKTLGIIMGTFTLCWLPFFIVNIVHVIQDN-LIRKEVYILLNWIGYVNSGFNPLIY 475 (514)
T ss_dssp -----------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTT-SSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-ccchHHHHHHHHHHHHHHhhhHHhh
Confidence 000000000011112233678999999999999999999999999988777543 3456677888899999999999999
Q ss_pred hccChhHHHHHHHHHhcCCCC
Q psy4354 318 TVFSPEFRQAFKRILCGSPNR 338 (342)
Q Consensus 318 ~~~n~~fR~~~~~ll~~~~~~ 338 (342)
+ ++++||++++++|||+++.
T Consensus 476 ~-~~~~fR~~~~~~l~~~~~~ 495 (514)
T 3sn6_R 476 C-RSPDFRIAFQELLCLRRSS 495 (514)
T ss_dssp T-TCHHHHHHHHTTCC-----
T ss_pred c-CCHHHHHHHHHHhCcCccc
Confidence 9 9999999999999877654
No 16
>2lnl_A C-X-C chemokine receptor type 1; G protein coupled receptor, GPCR, membrane protei transmembrane, 7TM, phospholipid, signaling, signaling PROT; NMR {Homo sapiens}
Probab=99.97 E-value=3.8e-32 Score=236.96 Aligned_cols=200 Identities=22% Similarity=0.302 Sum_probs=154.6
Q ss_pred hhhHHHhhHHHHHhHHHHhhheeeceeEEEeecccccccchhHHHHHHHHHHHHHHHHHHHhHhcccCCCcccccCccce
Q psy4354 4 LLFTGVLSHYNVDMLGYSTVIMFVDKYWAVTNVDYIHTRNANRIIMMIVVVWSVAFIVSLAPQLGWKDPEYMDRINQQKC 83 (342)
Q Consensus 4 ~~~~~~l~~~~~~~S~~~l~~IaidRY~aI~~~~y~~~~t~r~~~~~i~~~W~~s~~~~~p~~~~~~~~~~~~~~~~~~C 83 (342)
+-+.+++...+..+|++++++||+|||+||++|.+.....++++..+++++|++++++++|+.+.+.............+
T Consensus 82 c~~~~~~~~~~~~~s~~~l~~isidRy~aI~~P~~~~~~~~~~~~~~~~~~W~~s~~~~~p~~~~~~~~~~~~~~~~~~~ 161 (296)
T 2lnl_A 82 CKVVSLLKEVNFYSGILLLACISVDRYLAIVHATRTLTQKRHLVKFVCLGCWGLSMNLSLPFFLFRQAYHPNNSSPVCYE 161 (296)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCSSSSCCHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCCCCTTSCCCCS
T ss_pred HHHHhhhhhhhHHHHHHHHHHHHhhhhhhhhhccccchhhhhhhHheehHHHHHHHHHhcchhhcceeecCCCCCceeee
Confidence 34567888899999999999999999999999433344455677888889999999999988887776544332111111
Q ss_pred ec-----cCCchhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccCCCCCCCCCCccceeecccccccc
Q psy4354 84 MV-----SQDVGYQIFATCSTFYVPLLVILVLYWKIYQTARKRIRRRRQQRNVLMAGKKPDTSDNKTSHFIFFKKRKFFR 158 (342)
Q Consensus 84 ~~-----~~~~~~~~~~~~~~~~ip~~~i~~~y~~I~~~vr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (342)
.. .....+.++...+.+++|+.++.++|.++.+.++++
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~p~~i~~~~y~~i~~~~~~~------------------------------------- 204 (296)
T 2lnl_A 162 VLGNDTAKWRMVLRILPHTFGFIVPLFVMLFCYGFTLRTLFKA------------------------------------- 204 (296)
T ss_dssp CCSCCTTTTTTHHHHTTTHHHHHHHHHHHHHHHHHHTTTSSSC-------------------------------------
T ss_pred eccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------------------------------
Confidence 11 123356666677889999999999999887544321
Q ss_pred ccccCCCCCCCCCCCCcccccCCCCCcCCCCCCceeccCCCCCCCCCccccCCCCCCccceeccCCCCCCCCCCcccccc
Q psy4354 159 IKKCTNVVPPSPNKLSINVIDEDNGINNATTSSSLILADGHSNSDADRRTSINNEANTAFTITHNNGASQSNHNNECVQV 238 (342)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (342)
T Consensus 205 -------------------------------------------------------------------------------- 204 (296)
T 2lnl_A 205 -------------------------------------------------------------------------------- 204 (296)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccCCCCCcccchhhHHHHHHhhHHHHHHHHHHHHHHhhhhHHHHHHHHhhcCCCCc---------hhHHHHHHHHHHhhc
Q psy4354 239 KHKIPPTKKEKKESLEAKRERKAAKTLAIITGAFVICWLPFFMMALLLPLCQTCYI---------SDYLASFFLWLGYFN 309 (342)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~k~~k~l~~v~~~f~~cw~P~~i~~~~~~~~~~~~~---------~~~~~~~~~~l~~~n 309 (342)
..++++|++|++++++++|++||+|+.+..++..+.+.... ......++.+|+++|
T Consensus 205 ---------------~~~~~~k~~~~~~~v~~~f~icw~P~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~n 269 (296)
T 2lnl_A 205 ---------------HMGQKHRAMRVIFAVVLIFLLCWLPYNLVLLADTLMRTQVIQESCERRNNIGRALDATEILGFLH 269 (296)
T ss_dssp ---------------CCHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSSCSCHHHHHHHTTHHHHHHHHHGGGG
T ss_pred ---------------hhhhhhhHHHHHHHhhhheeeeehHHHHHHHHHHHhccccCCcchhhhhHHHHHHHHHHHHHHHH
Confidence 11456799999999999999999999999998777643221 234566788999999
Q ss_pred ccccchhhhccChhHHHHHHHHHhcC
Q psy4354 310 STLNPVIYTVFSPEFRQAFKRILCGS 335 (342)
Q Consensus 310 s~vNPiiY~~~n~~fR~~~~~ll~~~ 335 (342)
|++||+||+++|++||+++++++||+
T Consensus 270 s~~NPiIY~~~~~~fR~~~~~ll~cr 295 (296)
T 2lnl_A 270 SCLNPIIYAFIGQNFRHGFLKILAMH 295 (296)
T ss_dssp GTHHHHHHHHHCSHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhcCHHHHHHHHHHhcCC
Confidence 99999999999999999999999985
No 17
>2ks9_A Substance-P receptor; water, autodock, NK1, neuropeptide receptor-NEU complex; NMR {Homo sapiens} PDB: 2ksa_A 2ksb_A
Probab=99.97 E-value=2.1e-31 Score=238.87 Aligned_cols=210 Identities=23% Similarity=0.381 Sum_probs=160.9
Q ss_pred hhhHHHhhHHHHHhHHHHhhheeeceeEEEeecccccccchhHHHHHHHHHHHHHHHHHHHhHhcccCCCcccccCccce
Q psy4354 4 LLFTGVLSHYNVDMLGYSTVIMFVDKYWAVTNVDYIHTRNANRIIMMIVVVWSVAFIVSLAPQLGWKDPEYMDRINQQKC 83 (342)
Q Consensus 4 ~~~~~~l~~~~~~~S~~~l~~IaidRY~aI~~~~y~~~~t~r~~~~~i~~~W~~s~~~~~p~~~~~~~~~~~~~~~~~~C 83 (342)
+.+.+++..++..+|++++++||+|||+||++|.. ..++++++.++++++|++++++++|++ .+....... +...|
T Consensus 105 C~~~~~~~~~~~~~s~~~l~~isidRy~aI~~P~~-~~~~~~~~~~~i~~~W~~s~~~~~p~~-~~~~~~~~~--~~~~C 180 (364)
T 2ks9_A 105 CKFHNFFPIAAVFASIYSMTAVAFDRYMAIIHPLQ-PRLSATATKVVICVIWVLALLLAFPQG-YYSTTETMP--SRVVC 180 (364)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCT-TSCCHHHHHHHHHHHHHHHHHHHTTTT-TTSCCCBCT--TCSSB
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc-cccccchHHHHHHHHHHHHHHHHhHHH-HHhhheecC--CCCEE
Confidence 45667888899999999999999999999999533 237899999999999999999998554 454433322 25567
Q ss_pred eccCC--------chhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccCCCCCCCCCCccceeeccccc
Q psy4354 84 MVSQD--------VGYQIFATCSTFYVPLLVILVLYWKIYQTARKRIRRRRQQRNVLMAGKKPDTSDNKTSHFIFFKKRK 155 (342)
Q Consensus 84 ~~~~~--------~~~~~~~~~~~~~ip~~~i~~~y~~I~~~vr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (342)
...+. ..|.+...++.+++|+++++++|.+|++.++++.+...
T Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~ii~~~y~~i~~~l~~~~~~~~----------------------------- 231 (364)
T 2ks9_A 181 MIEWPEHPNKIYEKVYHICVTVLIYFLPLLVIGYAYTVVGITLWASEIPGD----------------------------- 231 (364)
T ss_dssp CCCCSCCCTTTTHHHHHHHHHHHHTHHHHHHHHHHHHHHHHSSCSCCCSSS-----------------------------
T ss_pred eecCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCC-----------------------------
Confidence 65321 25666777888999999999999999988875210000
Q ss_pred cccccccCCCCCCCCCCCCcccccCCCCCcCCCCCCceeccCCCCCCCCCccccCCCCCCccceeccCCCCCCCCCCccc
Q psy4354 156 FFRIKKCTNVVPPSPNKLSINVIDEDNGINNATTSSSLILADGHSNSDADRRTSINNEANTAFTITHNNGASQSNHNNEC 235 (342)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (342)
T Consensus 232 -------------------------------------------------------------------------------- 231 (364)
T 2ks9_A 232 -------------------------------------------------------------------------------- 231 (364)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccCCCCCcccchhhHHHHHHhhHHHHHHHHHHHHHHhhhhHHHHHHHHhhcCCC---CchhHHHHHHHHHHhhcccc
Q psy4354 236 VQVKHKIPPTKKEKKESLEAKRERKAAKTLAIITGAFVICWLPFFMMALLLPLCQTC---YISDYLASFFLWLGYFNSTL 312 (342)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~k~~k~l~~v~~~f~~cw~P~~i~~~~~~~~~~~---~~~~~~~~~~~~l~~~ns~v 312 (342)
.....+.+.++++|++|++++++++|++||+|+.+..++..+.++. .....+..+..++.++|+++
T Consensus 232 -----------~~~~~~~~~~~~~k~~~~~~~v~~~f~~~~~P~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~~ 300 (364)
T 2ks9_A 232 -----------SSDRYHEQVSAKRKVVKMMIVVVCTFAICWLPFHIFFLLPYINPDLYLKKFIQQVYLAIMWLAMSSTMY 300 (364)
T ss_dssp -----------SSSCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTSCSSSCCHHHHHHHHHHHHHHHHH
T ss_pred -----------cchhhhhhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccchhHHHHHHHHHHHHHHHHHHHH
Confidence 0000112446789999999999999999999999998887765432 23445667788899999999
Q ss_pred cchhhhccChhHHHHHHHHHhcCCC
Q psy4354 313 NPVIYTVFSPEFRQAFKRILCGSPN 337 (342)
Q Consensus 313 NPiiY~~~n~~fR~~~~~ll~~~~~ 337 (342)
||+||+++|++||++++++++|+++
T Consensus 301 NPiiY~~~~~~fR~~~~~~~~~~~~ 325 (364)
T 2ks9_A 301 NPIIYCCLNDRFRLGFKHAFRCCPF 325 (364)
T ss_dssp HHHHHHHHCHHHHHHHHHHHSSSCC
T ss_pred HHHHHHHHhHHHHHHHHHHHhhcCC
Confidence 9999999999999999999976553
No 18
>4ea3_A Fusion protein of nociceptin receptor and cytochr; PSI-biology GPCR network, structural genomics, GPCR membrane 7TM NOP ORL1 cytochrome B562; HET: 0NN OLB OLA OLC; 3.01A {Homo sapiens}
Probab=99.97 E-value=6.6e-31 Score=241.37 Aligned_cols=209 Identities=22% Similarity=0.382 Sum_probs=151.1
Q ss_pred hhhHHHhhHHHHHhHHHHhhheeeceeEEEee-cccccccchhHHHHHHHHHHHHHHHHHHHhHhcccCCCcccccCccc
Q psy4354 4 LLFTGVLSHYNVDMLGYSTVIMFVDKYWAVTN-VDYIHTRNANRIIMMIVVVWSVAFIVSLAPQLGWKDPEYMDRINQQK 82 (342)
Q Consensus 4 ~~~~~~l~~~~~~~S~~~l~~IaidRY~aI~~-~~y~~~~t~r~~~~~i~~~W~~s~~~~~p~~~~~~~~~~~~~~~~~~ 82 (342)
+.+.+++..++..+|++++++||+|||+||++ .+|...++++++..+++++|++++++++|+++.... .... ....
T Consensus 197 C~~~~~~~~~~~~~S~~~l~~isidRy~aI~~Pl~~~~~~t~~~~~~~i~~~W~~s~~~~~p~~~~~~~-~~~~--~~~~ 273 (434)
T 4ea3_A 197 CKTVIAIDYYNMFTSTFTLTAMSVDRYVAICHPIRALDVRTSSKAQAVNVAIWALASVVGVPVAIMGSA-QVED--EEIE 273 (434)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-------CHHHHHHHHHHHHHHHHHHHHHHHHHEEE-CCCS--SCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhEEEcccccccccchhhhHHhhhhhhhHHHHHHhhHheeeee-Eeec--Ccee
Confidence 45667888889999999999999999999999 678888999999999999999999999976654322 2222 2456
Q ss_pred eeccCC-------chhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccCCCCCCCCCCccceeeccccc
Q psy4354 83 CMVSQD-------VGYQIFATCSTFYVPLLVILVLYWKIYQTARKRIRRRRQQRNVLMAGKKPDTSDNKTSHFIFFKKRK 155 (342)
Q Consensus 83 C~~~~~-------~~~~~~~~~~~~~ip~~~i~~~y~~I~~~vr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (342)
|..... ..|.++..++.+++|+++++++|.+|++.+|++.+.
T Consensus 274 c~~~~~~~~~~~~~~~~~~~~~~~~~ip~~ii~~~y~~I~~~l~~~~~~------------------------------- 322 (434)
T 4ea3_A 274 CLVEIPTPQDYWGPVFAICIFLFSFIVPVLVISVCYSLMIRRLRGVRLL------------------------------- 322 (434)
T ss_dssp EEECCCSSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTTCSSC-------------------------------
T ss_pred EEEecCChHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc-------------------------------
Confidence 765322 335667778889999999999999999888752100
Q ss_pred cccccccCCCCCCCCCCCCcccccCCCCCcCCCCCCceeccCCCCCCCCCccccCCCCCCccceeccCCCCCCCCCCccc
Q psy4354 156 FFRIKKCTNVVPPSPNKLSINVIDEDNGINNATTSSSLILADGHSNSDADRRTSINNEANTAFTITHNNGASQSNHNNEC 235 (342)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (342)
T Consensus 323 -------------------------------------------------------------------------------- 322 (434)
T 4ea3_A 323 -------------------------------------------------------------------------------- 322 (434)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccCCCCCcccchhhHHHHHHhhHHHHHHHHHHHHHHhhhhHHHHHHHHhhcCCCC--chhHHHHHHHHHHhhccccc
Q psy4354 236 VQVKHKIPPTKKEKKESLEAKRERKAAKTLAIITGAFVICWLPFFMMALLLPLCQTCY--ISDYLASFFLWLGYFNSTLN 313 (342)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~k~~k~l~~v~~~f~~cw~P~~i~~~~~~~~~~~~--~~~~~~~~~~~l~~~ns~vN 313 (342)
...+...++++|+++++++++++|++||+|+.++.++..+..... ....+..++.++.++|+++|
T Consensus 323 -------------~~~~~~~~~~~~~~~~~~~vv~~F~i~w~P~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~lN 389 (434)
T 4ea3_A 323 -------------SGSREKDRNLRRITRLVLVVVAVFVGCWTPVQVFVLAQGLGVQPSSETAVAILRFCTALGYVNSCLN 389 (434)
T ss_dssp -------------SSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred -------------ccchhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHHHHHHH
Confidence 001124467889999999999999999999999988876653322 23345566777999999999
Q ss_pred chhhhccChhHHHHHHHHHhcCCCCC
Q psy4354 314 PVIYTVFSPEFRQAFKRILCGSPNRG 339 (342)
Q Consensus 314 PiiY~~~n~~fR~~~~~ll~~~~~~~ 339 (342)
|+||+++|++||+++++++||++.++
T Consensus 390 PiIY~~~~~~fR~~~~~~~~~~~~~~ 415 (434)
T 4ea3_A 390 PILYAFLDENFKACFRKFCCASALGR 415 (434)
T ss_dssp HHHHHHHCHHHHHHHC----------
T ss_pred HHHHHHHHHHHHHHHHHHhCccccCC
Confidence 99999999999999999998776544
No 19
>2koe_A Human cannabinoid receptor 1 - helix 7/8 peptide; GPCR, HCB1, membrane protein, signaling protein; NMR {Homo sapiens}
Probab=99.04 E-value=3.8e-11 Score=70.20 Aligned_cols=38 Identities=34% Similarity=0.606 Sum_probs=34.0
Q ss_pred HHHHHHHHHhhcccccchhhhccChhHHHHHHHHHhcC
Q psy4354 298 LASFFLWLGYFNSTLNPVIYTVFSPEFRQAFKRILCGS 335 (342)
Q Consensus 298 ~~~~~~~l~~~ns~vNPiiY~~~n~~fR~~~~~ll~~~ 335 (342)
++.++.+++++||++||+||++++++||++++++++|.
T Consensus 2 ~~~~~~~l~~~ns~lNPiIY~~~~~~fr~~~~~~~~~~ 39 (40)
T 2koe_A 2 VFAFASMLCLLNSTVNPIIYALRSKDLRHAFRSMFPSA 39 (40)
T ss_dssp HHHHHHHHHHHHHHSSTTTTBTTBHHHHHHHTTTCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHhhhc
Confidence 35678899999999999999999999999999988653
No 20
>2ki9_A Cannabinoid receptor 2; GPCR, G-protein coupled receptor, membrane protein; NMR {Synthetic}
Probab=98.45 E-value=1.2e-08 Score=56.33 Aligned_cols=30 Identities=27% Similarity=0.657 Sum_probs=26.1
Q ss_pred HhhHHHHHHHHHHHHHHhhhhHHHHHHHHh
Q psy4354 258 ERKAAKTLAIITGAFVICWLPFFMMALLLP 287 (342)
Q Consensus 258 ~~k~~k~l~~v~~~f~~cw~P~~i~~~~~~ 287 (342)
|+|++|++++++++|++||+||.+..++..
T Consensus 1 e~k~~k~l~~vv~~F~icW~P~~i~~~~~~ 30 (33)
T 2ki9_A 1 DVRLAKTLGLVLAVLLICWFPVLALMAHSL 30 (33)
T ss_dssp CCSSSSHHHHHHHHHTTTSSHHHHHHTTTT
T ss_pred CchhhhhHHHHHHHHHHHHhHHHHHHHHHH
Confidence 468899999999999999999999876643
No 21
>1hll_A Alpha-2A adrenergic receptor; helix-linker-helix, membrane protein; NMR {Synthetic} SCOP: j.94.1.1 PDB: 1hof_A 1ho9_A 1hod_A
Probab=98.27 E-value=1.5e-08 Score=55.72 Aligned_cols=29 Identities=21% Similarity=0.480 Sum_probs=24.9
Q ss_pred hHHHHhhheeeceeEEEee-cccccccchh
Q psy4354 17 MLGYSTVIMFVDKYWAVTN-VDYIHTRNAN 45 (342)
Q Consensus 17 ~S~~~l~~IaidRY~aI~~-~~y~~~~t~r 45 (342)
+|++++++||+|||+||++ .+|...++++
T Consensus 2 ~Si~~L~~is~dRy~aI~~Pl~~~~~~t~~ 31 (32)
T 1hll_A 2 SSIVHLCAISLDRYWSITQAIEYNLKRTPR 31 (32)
T ss_dssp HHHHHHHHHHTHHHHHHHHHHGGGSSCCCC
T ss_pred cHHHHHHHHHHHHHHHhhhhhhcccccCCC
Confidence 6899999999999999999 6777776654
No 22
>2ket_A Cathelicidin-6; antimicrobial peptide, antibiotic, antimicrobial, fungicide, pyrrolidone carboxylic acid, secreted; NMR {Bos taurus}
Probab=75.61 E-value=1.6 Score=20.77 Aligned_cols=14 Identities=29% Similarity=0.579 Sum_probs=11.8
Q ss_pred hhHHHHHHHHHhcC
Q psy4354 322 PEFRQAFKRILCGS 335 (342)
Q Consensus 322 ~~fR~~~~~ll~~~ 335 (342)
++||+.++++|++.
T Consensus 4 krfrkkfkklfkkl 17 (27)
T 2ket_A 4 KRFRKKFKKLFKKL 17 (27)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhc
Confidence 68999999999764
No 23
>2z73_A Rhodopsin; visual pigment, GQ-type, G-protein coupled receptor, chromophore, glycoprotein, lipoprotein, membrane, palmitate phosphorylation; HET: BOG RET PLM TWT PC1; 2.50A {Todarodes pacificus} PDB: 3aym_A* 3ayn_A* 2ziy_A*
Probab=50.73 E-value=49 Score=29.11 Aligned_cols=32 Identities=6% Similarity=0.064 Sum_probs=17.9
Q ss_pred HHhhcccccchhhhccChhHHHHHHHHHhcCC
Q psy4354 305 LGYFNSTLNPVIYTVFSPEFRQAFKRILCGSP 336 (342)
Q Consensus 305 l~~~ns~vNPiiY~~~n~~fR~~~~~ll~~~~ 336 (342)
+..+-..+|+.+-.+.---+-+++|+.+++..
T Consensus 299 ~~~~l~~~ns~~NPiIY~~~~~~fR~~~~~~~ 330 (448)
T 2z73_A 299 LPVMFAKASAIHNPMIYSVSHPKFREAISQTF 330 (448)
T ss_dssp HHHHHHHHGGGSHHHHHHHHCHHHHHHHHHHC
T ss_pred HHHHHHHHHHhhcchHHHHhhHHHHHHHHHHH
Confidence 33334445555555555555677777776554
No 24
>3arc_M Photosystem II reaction center protein M; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_M* 2axt_M* 3bz1_M* 3bz2_M* 3kzi_M* 3prq_M* 3prr_M* 3a0b_M* 3a0h_M*
Probab=50.60 E-value=28 Score=18.68 Aligned_cols=23 Identities=26% Similarity=0.488 Sum_probs=16.6
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHH
Q psy4354 92 QIFATCSTFYVPLLVILVLYWKI 114 (342)
Q Consensus 92 ~~~~~~~~~~ip~~~i~~~y~~I 114 (342)
......++.++|.+..+++|..-
T Consensus 7 ~fiAt~Lfi~iPt~FLlilYvqT 29 (36)
T 3arc_M 7 GLIATALFVLVPSVFLIILYVQT 29 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhee
Confidence 34445666789999999888753
No 25
>2rdd_B UPF0092 membrane protein YAJC; drug resistance, multidrug efflux, transporter, antiporter, novel transmembrane helix, ACRB, inner membrane; HET: AIC; 3.50A {Escherichia coli}
Probab=46.31 E-value=34 Score=18.44 Aligned_cols=26 Identities=27% Similarity=0.553 Sum_probs=14.9
Q ss_pred HHHHHH-HHHHHHHHHHHHHHHHHHhh
Q psy4354 101 YVPLLV-ILVLYWKIYQTARKRIRRRR 126 (342)
Q Consensus 101 ~ip~~~-i~~~y~~I~~~vr~~~~~~~ 126 (342)
++|+++ +++.|..+++-=+|+.+...
T Consensus 6 ~l~~v~~~~ifYFl~iRPQ~Kr~K~~~ 32 (37)
T 2rdd_B 6 ILMLVVFGLIFYFMILRPQQKRTKEHK 32 (37)
T ss_dssp HHHHHHHHHHHHHHTHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 345443 35667777766666555444
No 26
>2jx4_A Vasopressin V2 receptor; protein, G-protein coupled receptor, glycoprotein, lipoprotein, membrane, palmitate, phosphorylation, receptor transducer; HET: DGN NLE CCS; NMR {Synthetic}
Probab=35.36 E-value=48 Score=19.42 Aligned_cols=14 Identities=7% Similarity=0.078 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHH
Q psy4354 111 YWKIYQTARKRIRR 124 (342)
Q Consensus 111 y~~I~~~vr~~~~~ 124 (342)
|.+|++.+++..+.
T Consensus 2 y~~I~~~Iw~~~~~ 15 (52)
T 2jx4_A 2 QVLIFREIHASLVP 15 (52)
T ss_dssp CHHHHHHHHHHHTH
T ss_pred eEEEEeHHHhhCCc
Confidence 67888888887653
No 27
>3uon_A Human M2 muscarinic acetylcholine, receptor T4 LY fusion protein; G protein-coupled receptor, GPCR, SI protein-antagonist complex; HET: QNB BGC; 3.00A {Homo sapiens} PDB: 4daj_A*
Probab=32.98 E-value=2.4e+02 Score=24.43 Aligned_cols=25 Identities=20% Similarity=0.238 Sum_probs=12.8
Q ss_pred hhHHHHHHHHHHHHHHhhhhHHHHH
Q psy4354 259 RKAAKTLAIITGAFVICWLPFFMMA 283 (342)
Q Consensus 259 ~k~~k~l~~v~~~f~~cw~P~~i~~ 283 (342)
+++..+++++-++-++..+|..+..
T Consensus 138 ~~~~~~i~~~W~~~~~~~~~~~~~~ 162 (467)
T 3uon_A 138 KMAGMMIAAAWVLSFILWAPAILFW 162 (467)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444455555555555556655443
No 28
>3noh_A Putative peptide binding protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.60A {Ruminococcus gnavus}
Probab=29.99 E-value=29 Score=24.51 Aligned_cols=26 Identities=19% Similarity=0.454 Sum_probs=22.1
Q ss_pred ccccchhhhccChhHHHHHHHHHhcC
Q psy4354 310 STLNPVIYTVFSPEFRQAFKRILCGS 335 (342)
Q Consensus 310 s~vNPiiY~~~n~~fR~~~~~ll~~~ 335 (342)
-|+||.+=.+.+.++|++++..--.+
T Consensus 25 ~~iNp~ld~~~~~~~R~~Lka~~~g~ 50 (139)
T 3noh_A 25 FCMNPLLDKLSDEDIREQLKAFVTGK 50 (139)
T ss_dssp EEECTTSGGGCCHHHHHHHHHHHTTS
T ss_pred EEeccccCccccHHHHHHHHHHhcCc
Confidence 37899999999999999999876443
No 29
>1btq_A BAND 3 anion transport protein; NMR {} SCOP: j.35.1.1 PDB: 1btr_A
Probab=20.47 E-value=50 Score=16.32 Aligned_cols=18 Identities=17% Similarity=0.185 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHhhhhHHH
Q psy4354 264 TLAIITGAFVICWLPFFM 281 (342)
Q Consensus 264 ~l~~v~~~f~~cw~P~~i 281 (342)
.+..++.+|+.|..|...
T Consensus 2 ~laa~~FlyFa~l~paIa 19 (26)
T 1btq_A 2 VLAAVIFIYFAALSPAIT 19 (26)
T ss_pred hHHHHHHHHHHHHcchhc
Confidence 456778888889888543
Done!