RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy4354
(342 letters)
>gnl|CDD|215646 pfam00001, 7tm_1, 7 transmembrane receptor (rhodopsin family).
This family contains, amongst other G-protein-coupled
receptors (GCPRs), members of the opsin family, which
have been considered to be typical members of the
rhodopsin superfamily. They share several motifs, mainly
the seven transmembrane helices, GCPRs of the rhodopsin
superfamily. All opsins bind a chromophore, such as
11-cis-retinal. The function of most opsins other than
the photoisomerases is split into two steps: light
absorption and G-protein activation. Photoisomerases, on
the other hand, are not coupled to G-proteins - they are
thought to generate and supply the chromophore that is
used by visual opsins.
Length = 251
Score = 80.8 bits (200), Expect = 1e-17
Identities = 28/72 (38%), Positives = 40/72 (55%), Gaps = 2/72 (2%)
Query: 248 EKKESLEAKRERKAAKTLAIITGAFVICWLPFFMMALLLPLCQTCY--ISDYLASFFLWL 305
+ + + +ERKAAK L ++ FV+CWLP+ ++ LL LC + LWL
Sbjct: 180 QARAKRSSSKERKAAKMLLVVVVVFVLCWLPYHIVLLLDSLCPLSIWRLLPTALLITLWL 239
Query: 306 GYFNSTLNPVIY 317
Y NS LNP+IY
Sbjct: 240 AYVNSCLNPIIY 251
Score = 66.2 bits (162), Expect = 1e-12
Identities = 35/108 (32%), Positives = 52/108 (48%), Gaps = 5/108 (4%)
Query: 27 VDKYWAVTN-VDYIHTRNANRIIMMIVVVWSVAFIVSLAPQLGW--KDPEYMDRIN--QQ 81
+D+Y A+ + + Y R R ++I+VVW +A ++SL P L + E +
Sbjct: 74 IDRYLAIVHPLRYRRIRTPRRAKVLILVVWVLALLLSLPPLLFSWLRTVEEGNVTTCLID 133
Query: 82 KCMVSQDVGYQIFATCSTFYVPLLVILVLYWKIYQTARKRIRRRRQQR 129
S Y + +T F +PLLVILV Y I +T RKR R Q
Sbjct: 134 FPEESTKRSYTLLSTLLGFVLPLLVILVCYTLILRTLRKRARSGASQA 181
>gnl|CDD|222976 PHA03087, PHA03087, G protein-coupled chemokine receptor-like
protein; Provisional.
Length = 335
Score = 36.7 bits (85), Expect = 0.013
Identities = 25/91 (27%), Positives = 40/91 (43%), Gaps = 8/91 (8%)
Query: 250 KESLEAKRERKAAKTLAIITGAFVICWLPF------FMMALL--LPLCQTCYISDYLASF 301
K ++K+ +KA K + II FVI WLPF + + +L C+ Y
Sbjct: 231 KGINKSKKNKKAIKLVLIIVILFVIFWLPFNVSVFVYSLHILHFKSGCKAVKYIQYALHV 290
Query: 302 FLWLGYFNSTLNPVIYTVFSPEFRQAFKRIL 332
+ + +NP+IY S F + K+ L
Sbjct: 291 TEIISLSHCCINPLIYAFVSEFFNKHKKKSL 321
>gnl|CDD|218513 pfam05229, SCPU, Spore Coat Protein U domain. This domain is found
in a bacterial family of spore coat proteins, as well as
a family of secreted pili proteins involved in motility
and biofilm formation. This family is distantly related
to fimbrial proteins.
Length = 138
Score = 29.6 bits (67), Expect = 1.1
Identities = 16/75 (21%), Positives = 28/75 (37%), Gaps = 15/75 (20%)
Query: 162 CTNVVPPSPNKLSINVIDEDNGINNATTSSSLILADGHSN-------SDADRRTSINNEA 214
CTN + + + D G+N + ++ + +N DA R T N
Sbjct: 47 CTNGTTYT---IGL-----DGGLNGSGGTTRRMANTTGANYLPYQLYQDAGRSTVWGNGT 98
Query: 215 NTAFTITHNNGASQS 229
T+ T G +Q+
Sbjct: 99 GTSLAGTTGTGTAQT 113
>gnl|CDD|220692 pfam10324, 7TM_GPCR_Srw, Serpentine type 7TM GPCR chemoreceptor
Srw. Chemoreception is mediated in Caenorhabditis
elegans by members of the seven-transmembrane
G-protein-coupled receptor class (7TM GPCRs) of proteins
which are of the serpentine type. Srw is a solo family
amongst the superfamilies of chemoreceptors.
Chemoperception is one of the central senses of soil
nematodes like C. elegans which are otherwise 'blind'
and 'deaf'. The genes encoding Srw do not appear to be
under as strong an adaptive evolutionary pressure as
those of Srz.
Length = 317
Score = 30.3 bits (69), Expect = 1.3
Identities = 10/41 (24%), Positives = 20/41 (48%)
Query: 293 YISDYLASFFLWLGYFNSTLNPVIYTVFSPEFRQAFKRILC 333
I YL+ F L N+ + +I + S ++R+ K++
Sbjct: 275 LILTYLSVIFSLLLTINAISHCLICFLMSSQYRKTAKKLFG 315
>gnl|CDD|206228 pfam14058, PcfK, PcfK-like protein. The PcfK-like protein family
includes the Enterococcus faecalis PcfK protein, which
is functionally uncharacterized. This family of proteins
is found in bacteria and viruses. Proteins in this
family are typically between 137 and 257 amino acids in
length. There are two completely conserved residues (D
and L) that may be functionally important.
Length = 136
Score = 28.9 bits (65), Expect = 1.8
Identities = 10/37 (27%), Positives = 17/37 (45%), Gaps = 1/37 (2%)
Query: 234 EC-VQVKHKIPPTKKEKKESLEAKRERKAAKTLAIIT 269
C V V H + T++EK E+ + + + L I
Sbjct: 79 NCRVTVNHTVELTEEEKAEARKEALKAYQQEELRKIQ 115
>gnl|CDD|218611 pfam05499, DMAP1, DNA methyltransferase 1-associated protein 1
(DMAP1). DNA methylation can contribute to
transcriptional silencing through several
transcriptionally repressive complexes, which include
methyl-CpG binding domain proteins (MBDs) and histone
deacetylases (HDACs). The chief enzyme that maintains
mammalian DNA methylation, DNMT1, can also establish a
repressive transcription complex. The non-catalytic
amino terminus of DNMT1 binds to HDAC2 and DMAP1 (for
DNMT1 associated protein), and can mediate
transcriptional repression. DMAP1 has intrinsic
transcription repressive activity, and binds to the
transcriptional co-repressor TSG101. DMAP1 is targeted
to replication foci through interaction with the far N
terminus of DNMT1 throughout S phase, whereas HDAC2
joins DNMT1 and DMAP1 only during late S phase,
providing a platform for how histones may become
deacetylated in heterochromatin following replication.
Length = 175
Score = 29.4 bits (66), Expect = 1.8
Identities = 17/69 (24%), Positives = 27/69 (39%), Gaps = 6/69 (8%)
Query: 118 ARKRIRRRRQQ--RNVLMAGKKPDTSDNKTSHFIFFKKRKFFRIKKCTNVVPPSPNKLSI 175
ARK+ R ++ Q + ++ A + + K+ K KK PS +
Sbjct: 14 ARKKEREKKAQDLQKLITAADQQAAGFSTAEAR---KREKKLPKKKIPQKPGPSKEDSKV 70
Query: 176 NVIDEDNGI 184
NV E GI
Sbjct: 71 NVP-ETAGI 78
>gnl|CDD|138873 PRK12320, PRK12320, hypothetical protein; Provisional.
Length = 699
Score = 30.0 bits (67), Expect = 1.9
Identities = 13/27 (48%), Positives = 17/27 (62%)
Query: 118 ARKRIRRRRQQRNVLMAGKKPDTSDNK 144
AR RI+RRR +R L A + PD D+
Sbjct: 668 ARLRIKRRRAERERLQAQRPPDVIDHA 694
>gnl|CDD|165177 PHA02834, PHA02834, chemokine receptor-like protein; Provisional.
Length = 323
Score = 29.1 bits (65), Expect = 3.3
Identities = 23/112 (20%), Positives = 49/112 (43%), Gaps = 19/112 (16%)
Query: 27 VDKYWAVTNVDYIHTRNANRIIMMIVVVWSVAFIVSLAPQLGWKDPEYMDRINQQKCMVS 86
+D+Y V N I ++ + +++ V W + I+S+ P + + D + Q C+ +
Sbjct: 121 IDRYILVVNATKIKNKSISLSVLLSVAAWVCSVILSM-PAMVLYYVDNTDNLKQ--CIFN 177
Query: 87 QDVGYQIFATCSTFY----------VPLLVILVLYWKIYQT---ARKRIRRR 125
Y + S F+ +PL++++ Y KI T + + + R
Sbjct: 178 ---DYHENFSWSAFFNFEINIFGIVIPLIILIYCYSKILYTLKNCKNKNKTR 226
Score = 29.1 bits (65), Expect = 3.7
Identities = 9/33 (27%), Positives = 18/33 (54%)
Query: 305 LGYFNSTLNPVIYTVFSPEFRQAFKRILCGSPN 337
+ + + +NP+IY F++ FK + C + N
Sbjct: 280 ISFVHCCVNPIIYAFVGKNFKKVFKNMFCRTNN 312
>gnl|CDD|227448 COG5118, BDP1, Transcription initiation factor TFIIIB, Bdp1 subunit
[Transcription].
Length = 507
Score = 29.3 bits (65), Expect = 3.5
Identities = 24/125 (19%), Positives = 46/125 (36%), Gaps = 15/125 (12%)
Query: 141 SDNKTSHFIFFKKRKFFR---IKKCTNVVPPSPNKLSINVIDEDNGINNATTSSSLILAD 197
++N + F + R + KK + PP + + N ++ +S+ AD
Sbjct: 144 TENDMNLKTFKRHRVLGKPSSAKKPAKISPP-------TAMTDSLDRNFSSETSTSREAD 196
Query: 198 GHSNSDADRRTSI-----NNEANTAFTITHNNGASQSNHNNECVQVKHKIPPTKKEKKES 252
+ N + I + E+ F N ++ N +Q+ +K KK
Sbjct: 197 ENENYVISKVKDIPKKVRDGESAKYFIDEENFTMAELCKPNFPIQISENFEKSKMAKKAK 256
Query: 253 LEAKR 257
LE +R
Sbjct: 257 LEKRR 261
>gnl|CDD|192535 pfam10320, 7TM_GPCR_Srsx, Serpentine type 7TM GPCR chemoreceptor
Srsx. Chemoreception is mediated in Caenorhabditis
elegans by members of the seven-transmembrane
G-protein-coupled receptor class (7TM GPCRs) of proteins
which are of the serpentine type. Srsx is a solo family
amongst the superfamilies of chemoreceptors.
Chemoperception is one of the central senses of soil
nematodes like C. elegans which are otherwise 'blind'
and 'deaf'.
Length = 257
Score = 28.7 bits (65), Expect = 3.6
Identities = 17/88 (19%), Positives = 33/88 (37%), Gaps = 7/88 (7%)
Query: 249 KKESLEAKRERKAAKTLAIITGAFVICWLPFFMMALLLPLCQTCYIS-DYLASFFLWLGY 307
KK +K K+L + F+ W F + + + ++ G
Sbjct: 173 KKGQTTNSDSKKVFKSLQVTVIIFIFGW---FTSTIANTVFLLLTEDGEVENIIQMYAGI 229
Query: 308 F---NSTLNPVIYTVFSPEFRQAFKRIL 332
F + + N + S E+R+AF+R+
Sbjct: 230 FVNLSFSQNFFVTYWRSSEYRKAFRRLW 257
>gnl|CDD|223240 COG0162, TyrS, Tyrosyl-tRNA synthetase [Translation, ribosomal
structure and biogenesis].
Length = 401
Score = 28.7 bits (65), Expect = 4.9
Identities = 17/64 (26%), Positives = 24/64 (37%), Gaps = 12/64 (18%)
Query: 104 LLVILVLYWKIYQTARKRIRRRRQQRNVLMAGKKPDTSDNKTSHFIFFK-------KRKF 156
LLV L +R RR QQ V + G+K + + S + K+KF
Sbjct: 341 LLVDAGLA-----PSRSEARRLIQQGGVKINGEKVEDENYVLSDLLDNGLLVLRRGKKKF 395
Query: 157 FRIK 160
I
Sbjct: 396 ALIV 399
>gnl|CDD|215386 PLN02727, PLN02727, NAD kinase.
Length = 986
Score = 28.7 bits (64), Expect = 5.5
Identities = 18/95 (18%), Positives = 40/95 (42%), Gaps = 16/95 (16%)
Query: 149 IFFKKR--KFFRIKKCTNVVPPS-----------PNKLSINVIDEDNGINNATTSSSLIL 195
+F KK KFFR KK + PP+ + + + I++ + S L+
Sbjct: 467 VFSKKEMSKFFRSKK---IYPPTYLNYRRKGFEKLPVPQFTGVTQGSKIDDTDSISRLVE 523
Query: 196 ADGHSNSDADRRTSINNEANTAFTITHNNGASQSN 230
+ +++ +S +++ +NG+S ++
Sbjct: 524 TGRSNGLVSEKNSSPKYQSSEFDNGKSSNGSSFAS 558
>gnl|CDD|165021 PHA02638, PHA02638, CC chemokine receptor-like protein;
Provisional.
Length = 417
Score = 28.4 bits (63), Expect = 6.2
Identities = 23/91 (25%), Positives = 43/91 (47%), Gaps = 15/91 (16%)
Query: 249 KKESLEAKRERKAAKTLAIITGAFVICWLPFFMMALLLPLCQ----TCYISDYLASFFLW 304
K + L+ ++ K+ ++II +ICW+P ++ L + IS+++ F+
Sbjct: 299 KLKQLKKSKKTKSIIIVSIIIICSLICWIPLNIVILFATMYSFKGFNSIISEHICG-FIK 357
Query: 305 LGY----------FNSTLNPVIYTVFSPEFR 325
LGY + +NP+IYT+ FR
Sbjct: 358 LGYAMMLAEAISLTHCCINPLIYTLIGENFR 388
>gnl|CDD|218544 pfam05296, TAS2R, Mammalian taste receptor protein (TAS2R). This
family consists of several forms of mammalian taste
receptor proteins (TAS2Rs). TAS2Rs are G protein-coupled
receptors expressed in subsets of taste receptor cells
of the tongue and palate epithelia and are organised in
the genome in clusters. The proteins are genetically
linked to loci that influence bitter perception in mice
and humans.
Length = 303
Score = 28.0 bits (63), Expect = 6.5
Identities = 13/62 (20%), Positives = 29/62 (46%)
Query: 272 FVICWLPFFMMALLLPLCQTCYISDYLASFFLWLGYFNSTLNPVIYTVFSPEFRQAFKRI 331
F+I ++ +F+ L+ + + F + Y + + I + +P+ +QAF +I
Sbjct: 239 FLILYISYFLSFLISIISFLLPKNKLAFIFGEIVTYLYPSGHSFILILGNPKLKQAFLKI 298
Query: 332 LC 333
L
Sbjct: 299 LL 300
>gnl|CDD|219621 pfam07890, Rrp15p, Rrp15p. Rrp15p is required for the formation of
60S ribosomal subunits.
Length = 132
Score = 26.9 bits (60), Expect = 8.9
Identities = 12/27 (44%), Positives = 15/27 (55%), Gaps = 2/27 (7%)
Query: 239 KHKIPPTKKEKKESLE--AKRERKAAK 263
K + KK K E LE AKR+ +A K
Sbjct: 28 KKLLKAKKKLKSEKLEKKAKRQLRAEK 54
>gnl|CDD|212032 cd10322, SLC5sbd, Solute carrier 5 family, sodium/glucose
transporters and related proteins; solute-binding
domain. This family represents the solute-binding
domain of SLC5 proteins (also called the sodium/glucose
cotransporter family or solute sodium symporter family)
that co-transport Na+ with sugars, amino acids,
inorganic ions or vitamins. Family members include: the
human glucose (SGLT1, 2, 4, 5), chiro-inositol (SGLT5),
myo-inositol (SMIT), choline (CHT), iodide (NIS),
multivitamin (SMVT), and monocarboxylate (SMCT)
cotransporters, as well as Vibrio parahaemolyticus
glucose/galactose (vSGLT), and Escherichia coli proline
(PutP) and pantothenate (PutF) cotransporters. Vibrio
parahaemolyticus Na(+)/galactose cotransporter (vSGLT)
has 13 transmembrane helices (TMs): TM-1, an inverted
topology repeat: TMs1-5 and TMs6-10, and TMs 11-12 (TMs
numbered to conform to the solute carrier 6 family
Aquifex aeolicus LeuT). One member of this family, human
SGLT3, has been characterized as a glucose sensor and
not a transporter. Members of this family are important
in human physiology and disease.
Length = 455
Score = 27.9 bits (63), Expect = 9.9
Identities = 10/40 (25%), Positives = 15/40 (37%), Gaps = 5/40 (12%)
Query: 30 YWAVTNVDYIHTRNANRIIMMIVVVWSVAFIVSLAPQLGW 69
AV D I ++M+I V+ F +S G
Sbjct: 168 LRAVAWTDVIQG-----VLMLIGVILLAFFALSKVGGGGL 202
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.325 0.136 0.419
Gapped
Lambda K H
0.267 0.0693 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 17,427,003
Number of extensions: 1647803
Number of successful extensions: 2691
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2682
Number of HSP's successfully gapped: 38
Length of query: 342
Length of database: 10,937,602
Length adjustment: 98
Effective length of query: 244
Effective length of database: 6,590,910
Effective search space: 1608182040
Effective search space used: 1608182040
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 59 (26.6 bits)