RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy4354
(342 letters)
>3uon_A Human M2 muscarinic acetylcholine, receptor T4 LY fusion protein; G
protein-coupled receptor, GPCR, SI protein-antagonist
complex; HET: QNB BGC; 3.00A {Homo sapiens} PDB: 4daj_A*
Length = 467
Score = 224 bits (572), Expect = 7e-70
Identities = 60/347 (17%), Positives = 119/347 (34%), Gaps = 34/347 (9%)
Query: 27 VDKYWAVTN-VDYIHTRNANRIIMMIVVVWSVAFIVSLAPQLGWKDPEYMDRINQQKCMV 85
D+Y+ VT + Y R MMI W ++FI+ L W+ + + +C +
Sbjct: 119 FDRYFCVTKPLTYPVKRTTKMAGMMIAAAWVLSFILWAPAILFWQFIVGVRTVEDGECYI 178
Query: 86 S--QDVGYQIFATCSTFYVPLLVILVLYWKIYQTARKRIRRRRQQR-------------- 129
+ + FY+P++++ VLYW I + ++ RI R
Sbjct: 179 QFFSNAAVTFGTAIAAFYLPVIIMTVLYWHISRASKSRINIFEMLRIDEGLRLKIYKDTE 238
Query: 130 --------NVLMAGKKPDTSDNKTSHFIFFKKRKFFRIKKCTNVVPPSPNKLSINVIDED 181
++L + + ++ I + + + ++
Sbjct: 239 GYYTIGIGHLLTKSPSLNAAKSELDKAIGRNTNGVITKDEAEKLFNQDVDAAVRGILRNA 298
Query: 182 NGINNATTSSSLILADGHSNSDADRRTSINNEANTAFTITHNNGASQSNHNNECVQVKHK 241
+ ++ A + T + N+ + + + +
Sbjct: 299 KLKPVYDSLDAVRRAALINMVFQMGETGVAGFTNSLRMLQQKRWDEAAVNLAKSRWYNQT 358
Query: 242 IPPTKK--------EKKESLEAKRERKAAKTLAIITGAFVICWLPFFMMALLLPLCQTCY 293
K+ RE+K +T+ I AF+I W P+ +M L+ C C
Sbjct: 359 PNRAKRVITTFRTGTWDAYPPPSREKKVTRTILAILLAFIITWAPYNVMVLINTFCAPC- 417
Query: 294 ISDYLASFFLWLGYFNSTLNPVIYTVFSPEFRQAFKRILCGSPNRGR 340
I + + + WL Y NST+NP Y + + F++ FK +L
Sbjct: 418 IPNTVWTIGYWLCYINSTINPACYALCNATFKKTFKHLLMCHYKNIG 464
>2rh1_A Beta-2-adrenergic receptor/T4-lysozyme chimera; GPCR, 7TM, fusion,
lipidic cubic phase, lipidic, mesophase, cholesterol,
membrane protein; HET: MAL CAU CLR PLM 12P; 2.40A {Homo
sapiens} PDB: 3p0g_A* 3d4s_A* 3ny8_A* 3ny9_A* 3nya_A*
3pds_A*
Length = 500
Score = 224 bits (572), Expect = 1e-69
Identities = 73/352 (20%), Positives = 138/352 (39%), Gaps = 38/352 (10%)
Query: 27 VDKYWAVTN-VDYIHTRNANRIIMMIVVVWSVAFIVSLAP-QLGWKDPEYMDRIN----Q 80
VD+Y+A+T+ Y N+ ++I++VW V+ + S P Q+ W + + IN +
Sbjct: 136 VDRYFAITSPFKYQSLLTKNKARVIILMVWIVSGLTSFLPIQMHWYRATHQEAINCYAEE 195
Query: 81 QKCMVSQDVGYQIFATCSTFYVPLLVILVLYWKIYQTARKRIRRRRQQRN---------- 130
C + Y I ++ +FYVPL++++ +Y +++Q A++++ R
Sbjct: 196 TCCDFFTNQAYAIASSIVSFYVPLVIMVFVYSRVFQEAKRQLNIFEMLRIDEGLRLKIYK 255
Query: 131 ------------VLMAGKKPDTSDNKTSHFIFFKKRKFFRIKKCTNVVPPSPNKLSINVI 178
+L + + ++ I + + + ++
Sbjct: 256 DTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNTNGVITKDEAEKLFNQDVDAAVRGIL 315
Query: 179 -------DEDNGINNATTSSSLILADGHSNSDADRRTSINNEANTAFTITHNNGASQSNH 231
D+ + ++ A S+ + N A +
Sbjct: 316 RNAKLKPVYDSLDAVRRAALINMVFQMGETGVAGFTNSLRMLQQKRWDEAAVNLAKSRWY 375
Query: 232 NNECVQVKHKIPPTKK-EKKESLEAKRERKAAKTLAIITGAFVICWLPFFMMALLLPLCQ 290
N + K I + +E KA KTL II G F +CWLPFF++ ++ +
Sbjct: 376 NQTPNRAKRVITTFRTGTWDAYKFCLKEHKALKTLGIIMGTFTLCWLPFFIVNIVHVIQD 435
Query: 291 TCYISDYLASFFLWLGYFNSTLNPVIYTVFSPEFRQAFKRILCGSPNRGRFR 342
I + W+GY NS NP+IY SP+FR AF+ +LC + +
Sbjct: 436 NL-IRKEVYILLNWIGYVNSGFNPLIYC-RSPDFRIAFQELLCLRRSSLKAY 485
>3rze_A Histamine H1 receptor, lysozyme chimera; structural genomics,
PSI-biology, membrane protein, GPCR NET GPCR, hydrolase;
HET: 5EH D7V OLC; 3.10A {Homo sapiens}
Length = 452
Score = 221 bits (563), Expect = 9e-69
Identities = 68/350 (19%), Positives = 129/350 (36%), Gaps = 36/350 (10%)
Query: 27 VDKYWAVTN-VDYIHTRNANRIIMMIVVVWSVAFIVSLAPQLGWKDPEYMDRI---NQQK 82
+D+Y +V + Y+ R R I+ W ++F+ + P LGW + ++ +
Sbjct: 104 IDRYRSVQQPLRYLKYRTKTRASATILGAWFLSFLWVI-PILGWNHFMQQTSVRREDKCE 162
Query: 83 CMVSQDVGYQIFATCSTFYVPLLVILVLYWKIYQTARKRIRRRRQQRNVLMAGKKP---- 138
+++ FY+P L++L Y KIY+ R+ R K
Sbjct: 163 TDFYDVTWFKVMTAIINFYLPTLLMLWFYAKIYKAVRQHCNIFEMLRIDEGLRLKIYKDT 222
Query: 139 ------------------DTSDNKTSHFIFFKKRKFFRIKKCTNVVPPSPNKLSINVIDE 180
+ + ++ I + + + ++
Sbjct: 223 EGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNTNGVITKDEAEKLFNQDVDAAVRGILRN 282
Query: 181 DNGINNATTSSSLILADGHSNSDADRRTSINNEANTAFTITHNNGASQSNHNNECVQVKH 240
+ ++ A + T + N+ + + + +
Sbjct: 283 AKLKPVYDSLDAVRRAALINMVFQMGETGVAGFTNSLRMLQQKRWDEAAVNLAKSRWYNQ 342
Query: 241 KIPPTKK--------EKKESLEAKRERKAAKTLAIITGAFVICWLPFFMMALLLPLCQTC 292
K+ L RERKAAK L I AF++CW+P+F+ +++ C+ C
Sbjct: 343 TPNRAKRVITTFRTGTWDAYLHMNRERKAAKQLGFIMAAFILCWIPYFIFFMVIAFCKNC 402
Query: 293 YISDYLASFFLWLGYFNSTLNPVIYTVFSPEFRQAFKRILCGSPNRGRFR 342
+++L F +WLGY NSTLNP+IY + + F++ FKRIL +
Sbjct: 403 -CNEHLHMFTIWLGYINSTLNPLIYPLCNENFKKTFKRILHIRSGENLYF 451
>3pbl_A D(3) dopamine receptor, lysozyme chimera; structural genomics,
PSI-2, protein structure initiative, AC technologies
center for gene to 3D structure; HET: ETQ MAL; 2.89A
{Homo sapiens}
Length = 481
Score = 219 bits (559), Expect = 7e-68
Identities = 88/353 (24%), Positives = 147/353 (41%), Gaps = 43/353 (12%)
Query: 27 VDKYWAVTN-VDYIHT---RNANRIIMMIVVVWSVAFIVSLAPQLGWKDPEYMDRINQQK 82
+D+Y AV V Y H + R+ +MI VW +AF VS G+ +
Sbjct: 135 IDRYTAVVMPVHYQHGTGQSSCRRVALMITAVWVLAFAVSCPLLFGFNTTG-----DPTV 189
Query: 83 CMVSQDVGYQIFATCSTFYVPLLVILVLYWKIYQTARKRIRRRRQQ-------------- 128
C +S + + I+++ +FY+P V +++Y +IY ++R R+ +
Sbjct: 190 CSIS-NPDFVIYSSVVSFYLPFGVTVLVYARIYVVLKQRRRKNIFEMLRIDEGLRLKIYK 248
Query: 129 -----------------RNVLMAGKKPDTSDNKTSHFIFFKKRKFFRIKKCTNVVPPSPN 171
++ A + D + + ++ + K + +
Sbjct: 249 DTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNTNGVITKDEAEKLFNQDVDAAVRGIL 308
Query: 172 KLSINVIDEDNGINNATTSSSLILADGHSNSDADRRTSINNEANTAFTITHNNGASQSNH 231
+ + D+ + ++ A S+ + N A +
Sbjct: 309 RNAKLKPVYDSLDAVRRAALINMVFQMGETGVAGFTNSLRMLQQKRWDEAAVNLAKSRWY 368
Query: 232 NNECVQVKHKIPPTKK-EKKESLEAKRERKAAKTLAIITGAFVICWLPFFMMALLLPLCQ 290
N + K I + RE+KA + +AI+ GAF++CWLPFF+ +L CQ
Sbjct: 369 NQTPNRAKRVITTFRTGTWDAYGVPLREKKATQMVAIVLGAFIVCWLPFFLTHVLNTHCQ 428
Query: 291 TCYISDYLASFFLWLGYFNSTLNPVIYTVFSPEFRQAFKRIL-CGSPNRGRFR 342
TC++S L S WLGY NS LNPVIYT F+ EFR+AF +IL CG P F+
Sbjct: 429 TCHVSPELYSATTWLGYVNSALNPVIYTTFNIEFRKAFLKILSCGRPLEVLFQ 481
>3eml_A Human adenosine A2A receptor/T4 lysozyme chimera; caffeine, GPCR,
membrane protein, LCP, mesophase, structural genomics,
PSI-2; HET: ZMA STE; 2.60A {Homo sapiens} PDB: 3qak_A*
Length = 488
Score = 213 bits (543), Expect = 2e-65
Identities = 67/359 (18%), Positives = 114/359 (31%), Gaps = 45/359 (12%)
Query: 27 VDKYWAVTN-VDYIHTRNANRIIMMIVVVWSVAFIVSLAPQLGWKDPEYMDRI------- 78
+D+Y A+ + Y R +I + W ++F + L P LGW +
Sbjct: 115 IDRYIAIRIPLRYNGLVTGTRAKGIIAICWVLSFAIGLTPMLGWNNCGQPKEGKNHSQGC 174
Query: 79 -NQQKCMVSQDVGYQIFATCST----FYVPLLVILVLYWKIYQTARKRIRRRRQQRNVLM 133
Q + +DV + VPLL++L +Y +I+ AR+++ R
Sbjct: 175 GEGQVACLFEDVVPMNYMVYFNFFACVLVPLLLMLGVYLRIFLAARRQLNIFEMLRIDEG 234
Query: 134 A--------------------GKKPDTSDNKTSHFIFFKKRKFFRIKKCTNVVPPSPNKL 173
K P + K+ + I K + +
Sbjct: 235 LRLKIYKDTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNTNGVITKDEAEKLFNQDVD 294
Query: 174 SINVIDEDNGINNATTSSSLILADGHSNSDADRRTSINNEANTAFTITHNNGASQSNHNN 233
+ N S + + + T N
Sbjct: 295 AAVRGILRNAKLKPVYDSLDAVRRAALINMVFQMGETGVAGFTNSLRMLQQKRWDEAAVN 354
Query: 234 ECVQVKHKIPPTKK-----------EKKESLEAKRERKAAKTLAIITGAFVICWLPFFMM 282
+ P + ++E AAK+LAII G F +CWLP ++
Sbjct: 355 LAKSRWYNQTPNRAKRVITTFRTGTWDAYRSTLQKEVHAAKSLAIIVGLFALCWLPLHII 414
Query: 283 ALLLPLCQTC-YISDYLASFFLWLGYFNSTLNPVIYTVFSPEFRQAFKRILCGSPNRGR 340
C C + +L + L + NS +NP IY EFRQ F++I+ R +
Sbjct: 415 NCFTFFCPDCSHAPLWLMYLAIVLSHTNSVVNPFIYAYRIREFRQTFRKIIRSHVLRQQ 473
>4eiy_A Adenosine receptor A2A/soluble cytochrome B562 CH; novel protein
engineering, GPCR network, PSI-biology, struct genomics,
membrane protein, GPCR; HET: ZMA CLR OLA OLC OLB; 1.80A
{Homo sapiens} PDB: 3vg9_A* 3vga_A* 2ydv_A* 2ydo_A*
3uza_A* 3rey_A* 3rfm_A* 3pwh_A* 3uzc_A* 4er9_A
Length = 447
Score = 207 bits (527), Expect = 2e-63
Identities = 66/328 (20%), Positives = 115/328 (35%), Gaps = 34/328 (10%)
Query: 27 VDKYWAVTN-VDYIHTRNANRIIMMIVVVWSVAFIVSLAPQLGWKDPEYMDRINQ----- 80
+D+Y A+ + Y R +I + W ++F + L P LGW +
Sbjct: 125 IDRYIAIRIPLRYNGLVTGTRAKGIIAICWVLSFAIGLTPMLGWNNCGQPKEGKNHSQGC 184
Query: 81 ---QKCMVSQDV----GYQIFATCSTFYVPLLVILVLYWKIYQTARKRIRRRRQQRNVLM 133
Q + +DV F + VPLL++L +Y +I+ AR+++ L
Sbjct: 185 GEGQVACLFEDVVPMNYMVYFNFFACVLVPLLLMLGVYLRIFLAARRQLADLEDNWETLN 244
Query: 134 AGKKPDTSDNKTSHFIFFKKRKFFRIKKCTNVVPPSPNKLSINVIDEDNGINNATTSSSL 193
K I+K N + D
Sbjct: 245 DNLK--------------------VIEKADNAAQVKDALTKMRAAALDAQKATPPKLEDK 284
Query: 194 ILADGHSNSDADRRTSINNEANTAFTITHNNGASQSNHNNECVQVKHKIPPTKKEKKESL 253
+ + + A + + ++ E ++ K ++
Sbjct: 285 SPDSPEMKDFRHGFDILVGQIDDALKLANEGKVKEAQAAAEQLKTTRNAYIQKYLERARS 344
Query: 254 EAKRERKAAKTLAIITGAFVICWLPFFMMALLLPLCQTC-YISDYLASFFLWLGYFNSTL 312
++E AAK+LAII G F +CWLP ++ C C + +L + L + NS +
Sbjct: 345 TLQKEVHAAKSLAIIVGLFALCWLPLHIINCFTFFCPDCSHAPLWLMYLAIVLSHTNSVV 404
Query: 313 NPVIYTVFSPEFRQAFKRILCGSPNRGR 340
NP IY EFRQ F++I+ R +
Sbjct: 405 NPFIYAYRIREFRQTFRKIIRSHVLRQQ 432
>3v2y_A Sphingosine 1-phosphate receptor 1, lysozyme CHIM; EDG receptor,
lipid receptor, multiple sclerosi autoimmunity,
structural genomics, PSI-biology; HET: ML5 NAG; 2.80A
{Homo sapiens} PDB: 3v2w_A*
Length = 520
Score = 188 bits (478), Expect = 1e-55
Identities = 64/345 (18%), Positives = 121/345 (35%), Gaps = 34/345 (9%)
Query: 27 VDKYWAVTNVDYIHTRNANRIIMMIVVVWSVAFIVSLAPQLGWKDPEYMDRINQQKCMVS 86
+++Y + + + N R+ ++I W ++ I+ P +GW + + +
Sbjct: 158 IERYITMLKMKLHNGSNNFRLFLLISACWVISLILGGLPIMGWNCISALSSCST--VLPL 215
Query: 87 QDVGYQIFATCSTFYVPLLVILVLYWKIYQTARKRIRRRRQQRNVLMAGKKPDTSDNKTS 146
Y +F T F + LL I++LY +IY R R + + + K ++ +
Sbjct: 216 YHKHYILFCTTV-FTLLLLSIVILYCRIYSLVRTRNIFEMLRIDEGLRLKIYKDTEGYYT 274
Query: 147 HFIFFKKRKFFRIKKC---------TNVVPPSPNKLSINVIDEDNGINNATTSSSLILAD 197
I K + N + + ++D + L
Sbjct: 275 IGIGHLLTKSPSLNAAKSELDKAIGRNTNGVITKDEAEKLFNQDVDAAVRGILRNAKLKP 334
Query: 198 GHSNSDADRRTSINNEA-------NTAFTITHNNGASQSNHNNECVQVKHKIPPTKKEKK 250
+ + DA RR ++ N FT + + K + +
Sbjct: 335 VYDSLDAVRRAALINMVFQMGETGVAGFTNSLRMLQQKRWDEAAVNLAKSRWYNQTPNRA 394
Query: 251 ESL--------------EAKRERKAAKTLAIITGAFVICWLPFFMMALLLPLCQTC-YIS 295
+ + + KT+ I+ F+ CW P F++ LL C+
Sbjct: 395 KRVITTFRTGTWDAYASRSSENVALLKTVIIVLSVFIACWAPLFILLLLDVGCKVKTCDI 454
Query: 296 DYLASFFLWLGYFNSTLNPVIYTVFSPEFRQAFKRILCGSPNRGR 340
+ A +FL L NS NP+IYT+ + E R+AF RI+
Sbjct: 455 LFRAEYFLVLAVLNSGTNPIIYTLTNKEMRRAFIRIMGRPLEVLF 499
>3sn6_R Lysozyme, beta-2 adrenergic receptor; seven transmembrane receptor,
nanobody, G protein-coupled RE GPCR, signal
transduction, G protein signaling; HET: P0G; 3.20A
{Enterobacteria phage T4} PDB: 3kj6_A 2r4s_A 2r4r_A
Length = 514
Score = 120 bits (302), Expect = 1e-30
Identities = 38/114 (33%), Positives = 56/114 (49%), Gaps = 2/114 (1%)
Query: 227 SQSNHNNECVQVKHKIPPTKKEKKESLEAKRERKAAKTLAIITGAFVICWLPFFMMALLL 286
H QV+ ++ S +E KA KTL II G F +CWLPFF++ ++
Sbjct: 386 EGRFHVQNLSQVEQDGRTGHGLRRSSKFCLKEHKALKTLGIIMGTFTLCWLPFFIVNIVH 445
Query: 287 PLCQTCYISDYLASFFLWLGYFNSTLNPVIYTVFSPEFRQAFKRILCGSPNRGR 340
+ I + W+GY NS NP+IY SP+FR AF+ +LC + +
Sbjct: 446 VIQDNL-IRKEVYILLNWIGYVNSGFNPLIYC-RSPDFRIAFQELLCLRRSSLK 497
Score = 105 bits (263), Expect = 3e-25
Identities = 29/137 (21%), Positives = 66/137 (48%), Gaps = 6/137 (4%)
Query: 27 VDKYWAVTN-VDYIHTRNANRIIMMIVVVWSVAFIVSLAP-QLGWKDPEYMDRI----NQ 80
VD+Y+A+T+ Y N+ ++I++VW V+ + S P Q+ W + + I +
Sbjct: 278 VDRYFAITSPFKYQSLLTKNKARVIILMVWIVSGLTSFLPIQMHWYRATHQEAINCYAEE 337
Query: 81 QKCMVSQDVGYQIFATCSTFYVPLLVILVLYWKIYQTARKRIRRRRQQRNVLMAGKKPDT 140
C + Y I ++ +FYVPL++++ +Y +++Q A++++++ +
Sbjct: 338 TCCDFFTNQAYAIASSIVSFYVPLVIMVFVYSRVFQEAKRQLQKIDKSEGRFHVQNLSQV 397
Query: 141 SDNKTSHFIFFKKRKFF 157
+ + + KF
Sbjct: 398 EQDGRTGHGLRRSSKFC 414
>4amj_A Beta-1 adrenergic receptor; membrane protein, 7TMR
BETA1-adrenoceptor, stabilising mutat biased agonist;
HET: CVD 2CV; 2.30A {Meleagris gallopavo} PDB: 2y01_A*
2y02_A* 2y03_A* 2y04_A* 4ami_A* 2y00_A* 2vt4_A* 2ycw_A*
2ycx_A* 2ycy_A* 2ycz_A*
Length = 315
Score = 114 bits (286), Expect = 2e-29
Identities = 44/101 (43%), Positives = 58/101 (57%), Gaps = 2/101 (1%)
Query: 240 HKIPPTKKEKKESLEAKRERKAAKTLAIITGAFVICWLPFFMMALLLPLCQTCYISDYLA 299
KI K K + RE KA KTL II G F +CWLPFF++ ++ + + D+L
Sbjct: 209 RKIDRASKRKTSRVMLMREHKALKTLGIIMGVFTLCWLPFFLVNIVNVFNRDL-VPDWLF 267
Query: 300 SFFLWLGYFNSTLNPVIYTVFSPEFRQAFKRILCGSPNRGR 340
F WLGY NS +NP+IY SP+FR+AFKR+L R
Sbjct: 268 VAFNWLGYANSAMNPIIYC-RSPDFRKAFKRLLAFPRKADR 307
Score = 90.9 bits (226), Expect = 5e-21
Identities = 25/110 (22%), Positives = 54/110 (49%), Gaps = 6/110 (5%)
Query: 27 VDKYWAVTN-VDYIHTRNANRIIMMIVVVWSVAFIVSLAP-QLGW----KDPEYMDRINQ 80
+D+Y A+T+ Y R ++I VW+++ +VS P + W +
Sbjct: 107 IDRYLAITSPFRYQSLMTRARAKVIICTVWAISALVSFLPIMMHWWRDEDPQALKCYQDP 166
Query: 81 QKCMVSQDVGYQIFATCSTFYVPLLVILVLYWKIYQTARKRIRRRRQQRN 130
C + Y I ++ +FY+PLL+++ + ++Y+ A+++IR+ +
Sbjct: 167 GCCDFVTNRAYAIASSIISFYIPLLIMIFVALRVYREAKEQIRKIDRASK 216
>4dkl_A MU-type opioid receptor, lysozyme chimera; G-protein coupled
receptor, 7 transmembrane receptor, signal
protein-antagonist complex; HET: BF0 CLR MPG 1PE; 2.80A
{Mus musculus} PDB: 4ej4_A* 4djh_A*
Length = 464
Score = 111 bits (278), Expect = 1e-27
Identities = 52/362 (14%), Positives = 113/362 (31%), Gaps = 51/362 (14%)
Query: 23 VIMFVDKYWAVTN-VDYIHTRNANRIIMMIVVVWSVAFIVSLAPQLGWKDPEYMDRINQQ 81
M VD+Y AV + V + R ++ V W ++ + L P + +Y
Sbjct: 108 CTMSVDRYIAVCHPVKALDFRTPRNAKIVNVCNWILSSAIGL-PVMFMATTKYRQ--GSI 164
Query: 82 KCMVS-------QDVGYQIFATCSTFYVPLLVILVLYWKIYQTARKRIRRRRQQRNVLMA 134
C ++ + +I F +P+L+I V Y + + R
Sbjct: 165 DCTLTFSHPTWYWENLLKICVFIFAFIMPVLIITVCYGLMILRLKSVRNIFEMLRIDEGL 224
Query: 135 GKK--------------------PDTSDNKTSHF----------IFFKKRKFFRIKKCTN 164
K P + K+ I + + +
Sbjct: 225 RLKIYKNTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNTNGVITKDEAEKLFNQDVDA 284
Query: 165 VVPPSPNKLSINVIDEDNGINNATTSSSLILADGHSN----SDADRRTSINNEANTAFTI 220
V + + + +++ G + +++ R A +
Sbjct: 285 AVRGILRNAKLKPVYDSLDAVRRAALINMVFQMGETGVAGFTNSLRMLQQKRWDEAAVNL 344
Query: 221 THNNGASQSNHNNECVQVKHKIPPTKKEKKESLEAKRERKAAKTLAIITGAFVICWLPFF 280
+ +Q+ + + V + +K+ + R+ + + ++ F++CW P
Sbjct: 345 AKSRWYNQTPNRAKRVITTFRTGTWDAYEKD----RNLRRITRMVLVVVAVFIVCWTPIH 400
Query: 281 MMALL--LPLCQTCYISDYLASFFLWLGYFNSTLNPVIYTVFSPEFRQAFKRILCGSPNR 338
+ ++ L F + LGY NS LNPV+Y F++ F+ + +
Sbjct: 401 IYVIIKALITIPETTFQTVSWHFCIALGYTNSCLNPVLYAFLDENFKRCFREFCIPTSST 460
Query: 339 GR 340
Sbjct: 461 IE 462
>4ea3_A Fusion protein of nociceptin receptor and cytochr; PSI-biology GPCR
network, structural genomics, GPCR membrane 7TM NOP ORL1
cytochrome B562; HET: 0NN OLB OLA OLC; 3.01A {Homo
sapiens}
Length = 434
Score = 85.2 bits (211), Expect = 1e-18
Identities = 23/85 (27%), Positives = 40/85 (47%), Gaps = 2/85 (2%)
Query: 256 KRERKAAKTLAIITGAFVICWLPF--FMMALLLPLCQTCYISDYLASFFLWLGYFNSTLN 313
+ R+ + + ++ FV CW P F++A L + + + + F LGY NS LN
Sbjct: 330 RNLRRITRLVLVVVAVFVGCWTPVQVFVLAQGLGVQPSSETAVAILRFCTALGYVNSCLN 389
Query: 314 PVIYTVFSPEFRQAFKRILCGSPNR 338
P++Y F+ F++ C S
Sbjct: 390 PILYAFLDENFKACFRKFCCASALG 414
Score = 44.0 bits (104), Expect = 5e-05
Identities = 24/114 (21%), Positives = 48/114 (42%), Gaps = 11/114 (9%)
Query: 23 VIMFVDKYWAVTN-VDYIHTRNANRIIMMIVVVWSVAFIVSLAPQLGWKDPEYMDRINQQ 81
M VD+Y A+ + + + R +++ + V +W++A +V + P + D +
Sbjct: 216 TAMSVDRYVAICHPIRALDVRTSSKAQAVNVAIWALASVVGV-PVAIMGSAQVED--EEI 272
Query: 82 KCMVS-------QDVGYQIFATCSTFYVPLLVILVLYWKIYQTARKRIRRRRQQ 128
+C+V + I +F VP+LVI V Y + + R +
Sbjct: 273 ECLVEIPTPQDYWGPVFAICIFLFSFIVPVLVISVCYSLMIRRLRGVRLLSGSR 326
>2ks9_A Substance-P receptor; water, autodock, NK1, neuropeptide
receptor-NEU complex; NMR {Homo sapiens} PDB: 2ksa_A
2ksb_A
Length = 364
Score = 78.6 bits (194), Expect = 2e-16
Identities = 25/101 (24%), Positives = 43/101 (42%), Gaps = 3/101 (2%)
Query: 236 VQVKHKIPPTKKEKKESLEAKRERKAAKTLAIITGAFVICWLPFFMMALLLPLCQTCYIS 295
+ + P + + +RK K + ++ F ICWLPF + LL + Y+
Sbjct: 221 ITLWASEIPGDSSDRYHEQVSAKRKVVKMMIVVVCTFAICWLPFHIFFLLPYINPDLYLK 280
Query: 296 DYLASFFL---WLGYFNSTLNPVIYTVFSPEFRQAFKRILC 333
++ +L WL ++ NP+IY + FR FK
Sbjct: 281 KFIQQVYLAIMWLAMSSTMYNPIIYCCLNDRFRLGFKHAFR 321
Score = 42.3 bits (100), Expect = 1e-04
Identities = 30/137 (21%), Positives = 55/137 (40%), Gaps = 31/137 (22%)
Query: 20 YSTVIMFVDKYWAVTNVDYIH----TRNANRIIMMIVVVWSVAFIVSLAPQLGWKDPEYM 75
YS + D+Y A+ IH +A ++I V+W +A +++ PQ + E M
Sbjct: 121 YSMTAVAFDRYMAI-----IHPLQPRLSATATKVVICVIWVLALLLAF-PQGYYSTTETM 174
Query: 76 DRINQQKCMVS--------QDVGYQIFATCSTFYVPLLVILVLYWKIY-----------Q 116
++ CM+ + Y I T +++PLLVI Y +
Sbjct: 175 P--SRVVCMIEWPEHPNKIYEKVYHICVTVLIYFLPLLVIGYAYTVVGITLWASEIPGDS 232
Query: 117 TARKRIRRRRQQRNVLM 133
+ R + +++ V M
Sbjct: 233 SDRYHEQVSAKRKVVKM 249
>2z73_A Rhodopsin; visual pigment, GQ-type, G-protein coupled receptor,
chromophore, glycoprotein, lipoprotein, membrane,
palmitate phosphorylation; HET: BOG RET PLM TWT PC1;
2.50A {Todarodes pacificus} PDB: 3aym_A* 3ayn_A* 2ziy_A*
Length = 448
Score = 77.3 bits (190), Expect = 7e-16
Identities = 26/107 (24%), Positives = 48/107 (44%)
Query: 236 VQVKHKIPPTKKEKKESLEAKRERKAAKTLAIITGAFVICWLPFFMMALLLPLCQTCYIS 295
+ K K+ +K A E + AK +I F++ W P+ ++ALL +++
Sbjct: 234 MAAMAKRLNAKELRKAQAGANAEMRLAKISIVIVSQFLLSWSPYAVVALLAQFGPLEWVT 293
Query: 296 DYLASFFLWLGYFNSTLNPVIYTVFSPEFRQAFKRILCGSPNRGRFR 342
Y A + ++ NP+IY+V P+FR+A + +F
Sbjct: 294 PYAAQLPVMFAKASAIHNPMIYSVSHPKFREAISQTFPWVLTCCQFD 340
Score = 56.5 bits (136), Expect = 5e-09
Identities = 22/134 (16%), Positives = 48/134 (35%), Gaps = 10/134 (7%)
Query: 20 YSTVIMFVDKYWAVTN-VDYIHTRNANRIIMMIVVVWSVAFIVSLAPQLGWKDPEYMDRI 78
+ ++ +D+Y + + + R +MI+ VW + + ++ P GW Y
Sbjct: 124 MTMAMISIDRYNVIGRPMAASKKMSHRRAFIMIIFVWLWSVLWAIGPIFGWG--AYTLEG 181
Query: 79 NQQKCMV---SQDVGYQIFATCST---FYVPLLVILVLYWKIYQTARKRIRRRRQQRNVL 132
C S+D + C F+ P+L+I Y+ I + +
Sbjct: 182 VLCNCSFDYISRDSTTRSNILCMFILGFFGPILIIFFCYFNIVMSVSNHEKEMAAMAKR- 240
Query: 133 MAGKKPDTSDNKTS 146
+ K+ + +
Sbjct: 241 LNAKELRKAQAGAN 254
>3odu_A C-X-C chemokine receptor type 4, lysozyme chimera; structural
genomics, PSI-2, protein structure initiative; HET: ITD
OLC OLA; 2.50A {Homo sapiens} PDB: 3oe8_A* 3oe6_A*
3oe0_A* 3oe9_A* 2k03_B* 2k04_B 2k05_B*
Length = 502
Score = 76.5 bits (188), Expect = 1e-15
Identities = 55/380 (14%), Positives = 114/380 (30%), Gaps = 75/380 (19%)
Query: 23 VIMFVDKYWAVTN-VDYIHTRNANRIIMMIVVVWSVAFIVSLAPQLGWKDPEYMDRINQQ 81
+ +D+Y A+ + + R ++ V VW A ++++ P + + D ++
Sbjct: 138 AFISLDRYLAIVHATNSQRPRKLLAEKVVYVGVWIPALLLTI-PDFIFANVSEAD--DRY 194
Query: 82 KCMV-----SQDVGYQIFATCSTFYVPLLVILVLYWKIYQTARKRIRRRRQQRNVLMAGK 136
C V +Q +P +VIL Y I + +
Sbjct: 195 ICDRFYPNDLWVVVFQFQHIMVGLILPGIVILSCYCIIISKLSHSGSNIFEMLRID---- 250
Query: 137 KPDTSDNKTSHFIFFKKRKFFRIKKCTNVVPPSPNKLSINV-IDEDNGIN-NATTSSSLI 194
+ +K + + +++ SP+ + +D+ G N N +
Sbjct: 251 -------EGLRLKIYKDTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNTNGVITKDEA 303
Query: 195 LADGHSNSDADRRTSINNEANTAFTITHNNGASQSNHNNECVQV---------------- 238
+ + DA R I A + ++ N Q+
Sbjct: 304 EKLFNQDVDAAVR-GILRNAKLKPVYDSLDAVRRAALINMVFQMGETGVAGFTNSLRMLQ 362
Query: 239 KHKIPPTKKEKKESLEAKRERKAAKTLAI--------------------------ITGAF 272
+ + +S + AK + + AF
Sbjct: 363 QKRWDEAAVNLAKSRWYNQTPNRAKRVITTFRTGTWDAYGSKGHQKRKALKTTVILILAF 422
Query: 273 VICWLPFFMMALL---------LPLCQTCYISDYLASFFLWLGYFNSTLNPVIYTVFSPE 323
CWLP+++ + C+ S L +F+ LNP++Y +
Sbjct: 423 FACWLPYYIGISIDSFILLEIIKQGCEFENTVHKWISITEALAFFHCCLNPILYAFLGAK 482
Query: 324 FRQAFKRIL-CGSPNRGRFR 342
F+ + + L G P F+
Sbjct: 483 FKTSAQHALTSGRPLEVLFQ 502
>1u19_A Rhodopsin; G protein-coupled receptor, membrane protein, retinal
protei photoreceptor, signaling protein; HET: MAN NAG
BMA RET PLM HTO HTG; 2.20A {Bos taurus} SCOP: f.13.1.2
PDB: 1hzx_A* 1gzm_A* 1l9h_A* 2g87_A* 2hpy_A* 2i35_A*
2i36_A* 2i37_A* 2ped_A* 3oax_A* 3c9l_A* 1jfp_A* 1ln6_A*
1f88_A* 3cap_A* 3dqb_A* 3pqr_A* 3pxo_A* 3c9m_A* 2x72_A*
...
Length = 349
Score = 73.2 bits (180), Expect = 1e-14
Identities = 22/83 (26%), Positives = 38/83 (45%)
Query: 256 KRERKAAKTLAIITGAFVICWLPFFMMALLLPLCQTCYISDYLASFFLWLGYFNSTLNPV 315
K E++ + + I+ AF+ICWLP+ +A + Q + + ++ NPV
Sbjct: 246 KAEKEVTRMVIIMVIAFLICWLPYAGVAFYIFTHQGSDFGPIFMTIPAFFAKTSAVYNPV 305
Query: 316 IYTVFSPEFRQAFKRILCGSPNR 338
IY + + +FR LC N
Sbjct: 306 IYIMMNKQFRNCMVTTLCCGKNP 328
Score = 60.5 bits (147), Expect = 2e-10
Identities = 23/119 (19%), Positives = 49/119 (41%), Gaps = 10/119 (8%)
Query: 20 YSTVIMFVDKYWAVTNVDYIHTRNANRIIMMIVVVWSVAFIVSLAPQLGWKDPEYMDRIN 79
+S V++ +++Y V N IM + W +A + P +GW Y+
Sbjct: 127 WSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLVGWS--RYIPEGM 184
Query: 80 QQKCMV--------SQDVGYQIFATCSTFYVPLLVILVLYWKIYQTARKRIRRRRQQRN 130
Q C + + + + I+ F +PL+VI Y ++ T ++ ++++
Sbjct: 185 QCSCGIDYYTPHEETNNESFVIYMFVVHFIIPLIVIFFCYGQLVFTVKEAAAQQQESAT 243
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 37.0 bits (85), Expect = 0.011
Identities = 42/298 (14%), Positives = 86/298 (28%), Gaps = 113/298 (37%)
Query: 1 MIQLLFTGVLSHYNVD--MLGYSTVIMFVDKYWAVTNVDYIHTRNANRIIMMIVVVWSVA 58
+I ++ L+HY V +LG++ + T H++ +V A
Sbjct: 240 LIGVI---QLAHYVVTAKLLGFTPGELR-SYLKGAT----GHSQG-------LVT----A 280
Query: 59 FIVSLAPQLGWKDPEYMDRINQQKCMV--------SQDVGYQIFATCSTFYV-------- 102
++ W+ + + +K + + Y + +
Sbjct: 281 VAIAETD--SWES--FFV--SVRKAITVLFFIGVRCYEA-YPNTSLPPSILEDSLENNEG 333
Query: 103 ---PLLVILVLYWKIYQTARKRIRRRRQQ---------------RNVLMAG--------- 135
P+L I L + Q + + +N++++G
Sbjct: 334 VPSPMLSISNLTQEQVQ---DYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLN 390
Query: 136 ------KKPDTSD-NKTSHFIFFKKRK------FFRI---------KKCTNVVPP----- 168
K P D ++ I F +RK F + ++++
Sbjct: 391 LTLRKAKAPSGLDQSR----IPFSERKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKN 446
Query: 169 ----SPNKLSINVIDEDNGINNATTSSSLILADGHSNSDADRRTSINNEANTAFTITH 222
+ + I V D +G + S S+ D R + E T F TH
Sbjct: 447 NVSFNAKDIQIPVYDTFDGSDLRVLSGSIS----ERIVDCIIRLPVKWETTTQFKATH 500
>2koe_A Human cannabinoid receptor 1 - helix 7/8 peptide; GPCR, HCB1,
membrane protein, signaling protein; NMR {Homo sapiens}
Length = 40
Score = 30.9 bits (69), Expect = 0.043
Identities = 13/33 (39%), Positives = 20/33 (60%)
Query: 300 SFFLWLGYFNSTLNPVIYTVFSPEFRQAFKRIL 332
+F L NST+NP+IY + S + R AF+ +
Sbjct: 4 AFASMLCLLNSTVNPIIYALRSKDLRHAFRSMF 36
>3pqe_A L-LDH, L-lactate dehydrogenase; FBP, oxidoreductase; 2.20A
{Bacillus subtilis} PDB: 3pqf_A* 3pqd_A*
Length = 326
Score = 30.9 bits (71), Expect = 0.56
Identities = 12/58 (20%), Positives = 21/58 (36%), Gaps = 10/58 (17%)
Query: 52 VVVWSVAFI-----VSLAPQLGWKDPEYMDRINQQKCMVSQDVGYQIFA-TCSTFYVP 103
+ VWS A + L + E +D+I ++ Y I +T+Y
Sbjct: 183 LPVWSHANVGGVPVSELVEKNDAYKQEELDQIVDD----VKNAAYHIIEKKGATYYGV 236
>2ki9_A Cannabinoid receptor 2; GPCR, G-protein coupled receptor, membrane
protein; NMR {Synthetic}
Length = 33
Score = 26.5 bits (58), Expect = 1.3
Identities = 8/23 (34%), Positives = 13/23 (56%)
Query: 260 KAAKTLAIITGAFVICWLPFFMM 282
+ AKTL ++ +ICW P +
Sbjct: 3 RLAKTLGLVLAVLLICWFPVLAL 25
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR;
fatty acid synthase, acyl-carrier-protein, beta-ketoacyl
RED beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 1688
Score = 29.8 bits (67), Expect = 1.6
Identities = 7/11 (63%), Positives = 7/11 (63%)
Query: 331 ILCGSPNRGRF 341
IL SPN G F
Sbjct: 624 ILPMSPNHGTF 634
>1hll_A Alpha-2A adrenergic receptor; helix-linker-helix, membrane
protein; NMR {Synthetic} SCOP: j.94.1.1 PDB: 1hof_A
1ho9_A 1hod_A
Length = 32
Score = 25.1 bits (55), Expect = 3.7
Identities = 7/21 (33%), Positives = 13/21 (61%), Gaps = 1/21 (4%)
Query: 27 VDKYWAVTN-VDYIHTRNANR 46
+D+YW++T ++Y R R
Sbjct: 12 LDRYWSITQAIEYNLKRTPRR 32
>3j09_A COPA, copper-exporting P-type ATPase A; copper transporter,
adenosine triphosph archaeal proteins, cation transport
proteins; 10.00A {Archaeoglobus fulgidus}
Length = 723
Score = 28.3 bits (64), Expect = 4.4
Identities = 12/90 (13%), Positives = 24/90 (26%), Gaps = 16/90 (17%)
Query: 248 EKKESLEAKRERKAAKTLAIITGAFVICWLPFFMMALLLPLCQTCYISDYLASFFLWLGY 307
E+ K + + +A + L ++ +A
Sbjct: 70 EQAAVSAEVEHLSRMKRKLYVAAFAG---VLLLFLAHFISLPYEDFVQLLIAL------- 119
Query: 308 FNSTLNPVIYTVFSPEFRQAFKRILCGSPN 337
P I+ S F+ AF + + N
Sbjct: 120 ------PAIFYSGSSIFKAAFSALRRRTLN 143
>3q2w_A Cadherin-2; cell adhesion, calcium binding; HET: MAN NAG; 3.20A
{Mus musculus}
Length = 559
Score = 27.7 bits (62), Expect = 5.8
Identities = 13/59 (22%), Positives = 20/59 (33%), Gaps = 14/59 (23%)
Query: 167 PPSPNKLSINVIDEDNGINNATTSSSLILADGHSNSDADRRTSINNEANTAFTITHNNG 225
P PN ++I +D D N + L L+ + +TI NG
Sbjct: 456 TPEPNSINITALDYDIDPNAGPFAFDLPLSPVTIKRN--------------WTINRLNG 500
>2uw1_A Desaturase, plastid delta4 multifunctional acyl-ACYL carrier
desaturase; electron transfer, oxidoreductase, lipid
synthesis, fatty AC biosynthesis; HET: GVM; 1.95A
{Hedera helix} PDB: 2uw1_B* 1oq4_A 1oq7_A 1oq9_A 1oqb_A
2xz0_A* 2xz1_A* 1afr_A 2j2f_A
Length = 338
Score = 27.8 bits (61), Expect = 6.1
Identities = 13/44 (29%), Positives = 19/44 (43%), Gaps = 4/44 (9%)
Query: 236 VQVKHKIPPTKKEKKESLEAKRERKAAKTLAIITGAFVICWLPF 279
+QV H +PP K E +SL + A + I + W P
Sbjct: 1 MQVTHSMPPQKLEIFKSL----DDWARNNVLIHLKSVEKSWQPQ 40
>3ov9_A Nucleoprotein; orthogonal bundle, viral genomic encapsidation,
viral protein; 1.60A {Rift valley fever virus} PDB:
3ouo_A 3lyf_A
Length = 245
Score = 26.7 bits (58), Expect = 9.6
Identities = 14/68 (20%), Positives = 25/68 (36%), Gaps = 5/68 (7%)
Query: 277 LPFFMM-----ALLLPLCQTCYISDYLASFFLWLGYFNSTLNPVIYTVFSPEFRQAFKRI 331
P MM ++ P Y+ L + L+L F+ +NP + E F +
Sbjct: 140 YPRHMMHPSFAGMVDPSLPGDYLRAILDAHSLYLLQFSRVINPNLRGRTKEEVAATFTQP 199
Query: 332 LCGSPNRG 339
+ + N
Sbjct: 200 MNAAVNSN 207
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.325 0.136 0.419
Gapped
Lambda K H
0.267 0.0536 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,199,739
Number of extensions: 298816
Number of successful extensions: 1015
Number of sequences better than 10.0: 1
Number of HSP's gapped: 966
Number of HSP's successfully gapped: 35
Length of query: 342
Length of database: 6,701,793
Length adjustment: 94
Effective length of query: 248
Effective length of database: 4,077,219
Effective search space: 1011150312
Effective search space used: 1011150312
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 58 (26.6 bits)