RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy4354
         (342 letters)



>d1u19a_ f.13.1.2 (A:) Rhodopsin {Cow (Bos taurus) [TaxId: 9913]}
          Length = 348

 Score = 84.6 bits (208), Expect = 4e-19
 Identities = 22/83 (26%), Positives = 38/83 (45%)

Query: 256 KRERKAAKTLAIITGAFVICWLPFFMMALLLPLCQTCYISDYLASFFLWLGYFNSTLNPV 315
           K E++  + + I+  AF+ICWLP+  +A  +   Q         +   +    ++  NPV
Sbjct: 245 KAEKEVTRMVIIMVIAFLICWLPYAGVAFYIFTHQGSDFGPIFMTIPAFFAKTSAVYNPV 304

Query: 316 IYTVFSPEFRQAFKRILCGSPNR 338
           IY + + +FR      LC   N 
Sbjct: 305 IYIMMNKQFRNCMVTTLCCGKNP 327


>d1afra_ a.25.1.2 (A:) delta 9-stearoyl-acyl carrier protein
           desaturase {Castor bean (Ricinus communis) [TaxId:
           3988]}
          Length = 345

 Score = 26.4 bits (58), Expect = 5.0
 Identities = 15/43 (34%), Positives = 19/43 (44%), Gaps = 4/43 (9%)

Query: 236 VQVKHKIPPTKKEKKESLEAKRERKAAKTLAIITGAFVICWLP 278
           VQV H +PP K E  +SL+   E      L  +      CW P
Sbjct: 8   VQVTHSMPPQKIEIFKSLDNWAEENILVHLKPVE----KCWQP 46


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.325    0.136    0.419 

Gapped
Lambda     K      H
   0.267   0.0605    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,283,827
Number of extensions: 58319
Number of successful extensions: 184
Number of sequences better than 10.0: 1
Number of HSP's gapped: 184
Number of HSP's successfully gapped: 4
Length of query: 342
Length of database: 2,407,596
Length adjustment: 86
Effective length of query: 256
Effective length of database: 1,226,816
Effective search space: 314064896
Effective search space used: 314064896
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 53 (24.5 bits)