BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy4355
(71 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3PBL|A Chain A, Structure Of The Human Dopamine D3 Receptor In Complex
With Eticlopride
pdb|3PBL|B Chain B, Structure Of The Human Dopamine D3 Receptor In Complex
With Eticlopride
Length = 481
Score = 48.9 bits (115), Expect = 7e-07, Method: Composition-based stats.
Identities = 24/40 (60%), Positives = 30/40 (75%)
Query: 17 YRNVFVIAAILLEKNLQSVANYLIVSLAVADLMVACLVMP 56
+ N V A+L E+ LQ+ NYL+VSLAVADL+VA LVMP
Sbjct: 54 FGNGLVCMAVLKERALQTTTNYLVVSLAVADLLVATLVMP 93
>pdb|3RZE|A Chain A, Structure Of The Human Histamine H1 Receptor In Complex
With Doxepin
Length = 452
Score = 45.1 bits (105), Expect = 1e-05, Method: Composition-based stats.
Identities = 22/48 (45%), Positives = 33/48 (68%)
Query: 19 NVFVIAAILLEKNLQSVANYLIVSLAVADLMVACLVMPLGAVYELNAK 66
N+ V+ A+ E+ L +V N IVSL+VADL+V +VMP+ +Y L +K
Sbjct: 26 NLLVLYAVRSERKLHTVGNLYIVSLSVADLIVGAVVMPMNILYLLMSK 73
>pdb|3SN6|R Chain R, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs
Protein Complex
Length = 514
Score = 44.7 bits (104), Expect = 1e-05, Method: Composition-based stats.
Identities = 23/47 (48%), Positives = 30/47 (63%)
Query: 17 YRNVFVIAAILLEKNLQSVANYLIVSLAVADLMVACLVMPLGAVYEL 63
+ NV VI AI + LQ+V NY I SLA ADL++ V+P GA + L
Sbjct: 198 FGNVLVITAIAKFERLQTVTNYFITSLACADLVMGLAVVPFGAAHIL 244
>pdb|3P0G|A Chain A, Structure Of A Nanobody-Stabilized Active State Of The
Beta2 Adrenoceptor
Length = 501
Score = 44.3 bits (103), Expect = 2e-05, Method: Composition-based stats.
Identities = 23/47 (48%), Positives = 30/47 (63%)
Query: 17 YRNVFVIAAILLEKNLQSVANYLIVSLAVADLMVACLVMPLGAVYEL 63
+ NV VI AI + LQ+V NY I SLA ADL++ V+P GA + L
Sbjct: 57 FGNVLVITAIAKFERLQTVTNYFITSLACADLVMGLAVVPFGAAHIL 103
>pdb|2RH1|A Chain A, High Resolution Crystal Structure Of Human B2-Adrenergic G
Protein- Coupled Receptor
Length = 500
Score = 44.3 bits (103), Expect = 2e-05, Method: Composition-based stats.
Identities = 23/47 (48%), Positives = 30/47 (63%)
Query: 17 YRNVFVIAAILLEKNLQSVANYLIVSLAVADLMVACLVMPLGAVYEL 63
+ NV VI AI + LQ+V NY I SLA ADL++ V+P GA + L
Sbjct: 56 FGNVLVITAIAKFERLQTVTNYFITSLACADLVMGLAVVPFGAAHIL 102
>pdb|3D4S|A Chain A, Cholesterol Bound Form Of Human Beta2 Adrenergic Receptor.
pdb|3NY8|A Chain A, Crystal Structure Of The Human Beta2 Adrenergic Receptor
In Complex With The Inverse Agonist Ici 118,551
pdb|3NY9|A Chain A, Crystal Structure Of The Human Beta2 Adrenergic Receptor
In Complex With A Novel Inverse Agonist
pdb|3NYA|A Chain A, Crystal Structure Of The Human Beta2 Adrenergic Receptor
In Complex With The Neutral Antagonist Alprenolol
Length = 490
Score = 44.3 bits (103), Expect = 2e-05, Method: Composition-based stats.
Identities = 23/47 (48%), Positives = 30/47 (63%)
Query: 17 YRNVFVIAAILLEKNLQSVANYLIVSLAVADLMVACLVMPLGAVYEL 63
+ NV VI AI + LQ+V NY I SLA ADL++ V+P GA + L
Sbjct: 57 FGNVLVITAIAKFERLQTVTNYFITSLACADLVMGLAVVPFGAAHIL 103
>pdb|3KJ6|A Chain A, Crystal Structure Of A Methylated Beta2 Adrenergic
Receptor- Fab Complex
Length = 366
Score = 44.3 bits (103), Expect = 2e-05, Method: Composition-based stats.
Identities = 23/47 (48%), Positives = 30/47 (63%)
Query: 17 YRNVFVIAAILLEKNLQSVANYLIVSLAVADLMVACLVMPLGAVYEL 63
+ NV VI AI + LQ+V NY I SLA ADL++ V+P GA + L
Sbjct: 50 FGNVLVITAIAKFERLQTVTNYFITSLACADLVMGLAVVPFGAAHIL 96
>pdb|2R4R|A Chain A, Crystal Structure Of The Human Beta2 Adrenoceptor
Length = 365
Score = 44.3 bits (103), Expect = 2e-05, Method: Composition-based stats.
Identities = 23/47 (48%), Positives = 30/47 (63%)
Query: 17 YRNVFVIAAILLEKNLQSVANYLIVSLAVADLMVACLVMPLGAVYEL 63
+ NV VI AI + LQ+V NY I SLA ADL++ V+P GA + L
Sbjct: 49 FGNVLVITAIAKFERLQTVTNYFITSLACADLVMGLAVVPFGAAHIL 95
>pdb|2R4S|A Chain A, Crystal Structure Of The Human Beta2 Adrenoceptor
Length = 342
Score = 43.9 bits (102), Expect = 2e-05, Method: Composition-based stats.
Identities = 23/47 (48%), Positives = 30/47 (63%)
Query: 17 YRNVFVIAAILLEKNLQSVANYLIVSLAVADLMVACLVMPLGAVYEL 63
+ NV VI AI + LQ+V NY I SLA ADL++ V+P GA + L
Sbjct: 26 FGNVLVITAIAKFERLQTVTNYFITSLACADLVMGLAVVPFGAAHIL 72
>pdb|4GBR|A Chain A, N-terminal T4 Lysozyme Fusion Facilitates
Crystallization Of A G Protein Coupled Receptor
Length = 309
Score = 43.1 bits (100), Expect = 4e-05, Method: Composition-based stats.
Identities = 23/47 (48%), Positives = 30/47 (63%)
Query: 17 YRNVFVIAAILLEKNLQSVANYLIVSLAVADLMVACLVMPLGAVYEL 63
+ NV VI AI + LQ+V NY I SLA ADL++ V+P GA + L
Sbjct: 21 FGNVLVITAIAKFERLQTVTNYFITSLACADLVMGLAVVPFGAAHIL 67
>pdb|2Y00|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Partial Agonist Dobutamine (Crystal
Dob92)
pdb|2Y00|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Partial Agonist Dobutamine (Crystal
Dob92)
pdb|2Y01|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Partial Agonist Dobutamine (Crystal
Dob102)
pdb|2Y01|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Partial Agonist Dobutamine (Crystal
Dob102)
pdb|2Y02|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Agonist Carmoterol
pdb|2Y02|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Agonist Carmoterol
pdb|2Y03|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Agonist Isoprenaline
pdb|2Y03|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Agonist Isoprenaline
pdb|2Y04|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Partial Agonist Salbutamol
pdb|2Y04|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Partial Agonist Salbutamol
pdb|4AMI|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Biased Agonist Bucindolol
pdb|4AMI|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Biased Agonist Bucindolol
pdb|4AMJ|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Biased Agonist Carvedilol
pdb|4AMJ|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Biased Agonist Carvedilol
Length = 315
Score = 43.1 bits (100), Expect = 4e-05, Method: Composition-based stats.
Identities = 23/41 (56%), Positives = 28/41 (68%)
Query: 19 NVFVIAAILLEKNLQSVANYLIVSLAVADLMVACLVMPLGA 59
NV VIAAI + LQ++ N I SLA ADL+V LV+P GA
Sbjct: 29 NVLVIAAIGSTQRLQTLTNLFITSLACADLVVGLLVVPFGA 69
>pdb|2VT4|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Cyanopindolol
pdb|2VT4|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Cyanopindolol
pdb|2VT4|C Chain C, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Cyanopindolol
pdb|2VT4|D Chain D, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Cyanopindolol
pdb|2YCW|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Antagonist Carazolol
pdb|2YCW|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Antagonist Carazolol
pdb|2YCX|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Antagonist Cyanopindolol
pdb|2YCX|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Antagonist Cyanopindolol
pdb|2YCZ|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Antagonist Iodocyanopindolol
pdb|2YCZ|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Antagonist Iodocyanopindolol
pdb|2YCY|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Antagonist Cyanopindolol
pdb|2YCY|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Antagonist Cyanopindolol
pdb|4GPO|A Chain A, Oligomeic Turkey Beta1-adrenergic G Protein-coupled
Receptor
pdb|4GPO|B Chain B, Oligomeic Turkey Beta1-adrenergic G Protein-coupled
Receptor
Length = 313
Score = 43.1 bits (100), Expect = 4e-05, Method: Composition-based stats.
Identities = 23/41 (56%), Positives = 28/41 (68%)
Query: 19 NVFVIAAILLEKNLQSVANYLIVSLAVADLMVACLVMPLGA 59
NV VIAAI + LQ++ N I SLA ADL+V LV+P GA
Sbjct: 29 NVLVIAAIGSTQRLQTLTNLFITSLACADLVVGLLVVPFGA 69
>pdb|3PDS|A Chain A, Irreversible Agonist-Beta2 Adrenoceptor Complex
Length = 458
Score = 43.1 bits (100), Expect = 4e-05, Method: Composition-based stats.
Identities = 22/43 (51%), Positives = 28/43 (65%)
Query: 17 YRNVFVIAAILLEKNLQSVANYLIVSLAVADLMVACLVMPLGA 59
+ NV VI AI + LQ+V NY I SLA ADL++ V+P GA
Sbjct: 25 FGNVLVITAIAKFERLQTVTNYFITSLACADLVMGLAVVPFGA 67
>pdb|3EML|A Chain A, The 2.6 A Crystal Structure Of A Human A2a Adenosine
Receptor Bound To Zm241385.
pdb|3QAK|A Chain A, Agonist Bound Structure Of The Human Adenosine A2a
Receptor
Length = 488
Score = 42.4 bits (98), Expect = 7e-05, Method: Composition-based stats.
Identities = 20/40 (50%), Positives = 25/40 (62%)
Query: 19 NVFVIAAILLEKNLQSVANYLIVSLAVADLMVACLVMPLG 58
NV V A+ L NLQ+V NY +VSLA AD+ V L +P
Sbjct: 39 NVLVCWAVWLNSNLQNVTNYFVVSLAAADIAVGVLAIPFA 78
>pdb|3PWH|A Chain A, Thermostabilised Adenosine A2a Receptor
pdb|3REY|A Chain A, Thermostabilised Adenosine A2a Receptor In Complex With
Xac
pdb|3RFM|A Chain A, Thermostabilised Adenosine A2a Receptor In Complex With
Caffeine
pdb|3UZA|A Chain A, Thermostabilised Adenosine A2a Receptor In Complex With
6-(2,6-
Dimethylpyridin-4-Yl)-5-Phenyl-1,2,4-Triazin-3-Amine
pdb|3UZC|A Chain A, Thermostabilised Adenosine A2a Receptor In Complex With
4-(3-Amino-5- Phenyl-1,2,4-Triazin-6-Yl)-2-Chlorophenol
Length = 329
Score = 41.6 bits (96), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 20/40 (50%), Positives = 26/40 (65%)
Query: 19 NVFVIAAILLEKNLQSVANYLIVSLAVADLMVACLVMPLG 58
NV V A+ L NLQ+V NY +VSLA AD++V L +P
Sbjct: 24 NVLVCWAVWLNSNLQNVTNYFVVSLAAADILVGVLAIPFA 63
>pdb|4EIY|A Chain A, Crystal Structure Of The Chimeric Protein Of A2aar-Bril
In Complex With Zm241385 At 1.8a Resolution
Length = 447
Score = 41.2 bits (95), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 20/40 (50%), Positives = 25/40 (62%)
Query: 19 NVFVIAAILLEKNLQSVANYLIVSLAVADLMVACLVMPLG 58
NV V A+ L NLQ+V NY +VSLA AD+ V L +P
Sbjct: 49 NVLVCWAVWLNSNLQNVTNYFVVSLAAADIAVGVLAIPFA 88
>pdb|3VG9|A Chain A, Crystal Structure Of Human Adenosine A2a Receptor With
An Allosteric Inverse-Agonist Antibody At 2.7 A
Resolution
pdb|3VGA|A Chain A, Crystal Structure Of Human Adenosine A2a Receptor With
An Allosteric Inverse-Agonist Antibody At 3.1 A
Resolution
Length = 326
Score = 40.8 bits (94), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 20/40 (50%), Positives = 25/40 (62%)
Query: 19 NVFVIAAILLEKNLQSVANYLIVSLAVADLMVACLVMPLG 58
NV V A+ L NLQ+V NY +VSLA AD+ V L +P
Sbjct: 24 NVLVCWAVWLNSNLQNVTNYFVVSLAAADIAVGVLAIPFA 63
>pdb|2YDO|A Chain A, Thermostabilised Human A2a Receptor With Adenosine Bound
pdb|2YDV|A Chain A, Thermostabilised Human A2a Receptor With Neca Bound
Length = 325
Score = 39.7 bits (91), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 19/40 (47%), Positives = 25/40 (62%)
Query: 19 NVFVIAAILLEKNLQSVANYLIVSLAVADLMVACLVMPLG 58
NV V A+ L NLQ+V NY +VS A AD++V L +P
Sbjct: 24 NVLVCWAVWLNSNLQNVTNYFVVSAAAADILVGVLAIPFA 63
>pdb|4DAJ|A Chain A, Structure Of The M3 Muscarinic Acetylcholine Receptor
pdb|4DAJ|B Chain B, Structure Of The M3 Muscarinic Acetylcholine Receptor
pdb|4DAJ|C Chain C, Structure Of The M3 Muscarinic Acetylcholine Receptor
pdb|4DAJ|D Chain D, Structure Of The M3 Muscarinic Acetylcholine Receptor
Length = 479
Score = 38.9 bits (89), Expect = 8e-04, Method: Composition-based stats.
Identities = 18/43 (41%), Positives = 27/43 (62%)
Query: 19 NVFVIAAILLEKNLQSVANYLIVSLAVADLMVACLVMPLGAVY 61
N+ VI A + K L++V NY ++SLA ADL++ + M L Y
Sbjct: 30 NILVIVAFKVNKQLKTVNNYFLLSLACADLIIGVISMNLFTTY 72
>pdb|3UON|A Chain A, Structure Of The Human M2 Muscarinic Acetylcholine
Receptor Bound To An Antagonist
Length = 467
Score = 37.7 bits (86), Expect = 0.002, Method: Composition-based stats.
Identities = 17/43 (39%), Positives = 28/43 (65%)
Query: 19 NVFVIAAILLEKNLQSVANYLIVSLAVADLMVACLVMPLGAVY 61
N+ V+ +I + ++LQ+V NY + SLA ADL++ M L +Y
Sbjct: 41 NILVMVSIKVNRHLQTVNNYFLFSLACADLIIGVFSMNLYTLY 83
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.137 0.392
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,785,527
Number of Sequences: 62578
Number of extensions: 45360
Number of successful extensions: 122
Number of sequences better than 100.0: 28
Number of HSP's better than 100.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 94
Number of HSP's gapped (non-prelim): 28
length of query: 71
length of database: 14,973,337
effective HSP length: 41
effective length of query: 30
effective length of database: 12,407,639
effective search space: 372229170
effective search space used: 372229170
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 45 (21.9 bits)