Query psy4355
Match_columns 71
No_of_seqs 228 out of 1410
Neff 9.2
Searched_HMMs 46136
Date Fri Aug 16 23:25:53 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4355.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/4355hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4219|consensus 99.4 6.8E-14 1.5E-18 89.0 2.5 59 10-68 44-102 (423)
2 PHA03234 DNA packaging protein 99.4 1.9E-12 4.2E-17 81.3 7.8 63 7-70 38-102 (338)
3 KOG4220|consensus 99.2 2.1E-13 4.5E-18 87.4 -3.5 63 5-67 34-96 (503)
4 PHA02638 CC chemokine receptor 99.2 1.5E-10 3.1E-15 74.6 8.4 61 8-70 105-165 (417)
5 PHA02834 chemokine receptor-li 99.2 1.9E-10 4.2E-15 71.6 7.5 60 8-69 35-94 (323)
6 PF00001 7tm_1: 7 transmembran 99.0 2.4E-09 5.3E-14 62.6 6.5 50 18-67 1-50 (257)
7 PHA03235 DNA packaging protein 98.9 1.1E-08 2.4E-13 65.9 7.3 53 8-61 39-93 (409)
8 PHA03087 G protein-coupled che 98.8 9.8E-09 2.1E-13 63.9 5.0 58 8-67 47-104 (335)
9 PF10320 7TM_GPCR_Srsx: Serpen 98.5 8.1E-08 1.7E-12 58.5 1.9 48 14-61 3-50 (257)
10 KOG2087|consensus 97.5 6.3E-05 1.4E-09 48.1 1.7 55 8-62 31-85 (363)
11 PF10328 7TM_GPCR_Srx: Serpent 96.8 0.011 2.5E-07 36.1 6.9 42 12-53 4-45 (274)
12 PF10324 7TM_GPCR_Srw: Serpent 96.6 0.0073 1.6E-07 37.5 5.0 50 12-62 7-57 (318)
13 PF05296 TAS2R: Mammalian tast 96.2 0.08 1.7E-06 33.3 8.2 48 9-56 14-64 (303)
14 PF05462 Dicty_CAR: Slime mold 95.2 0.1 2.2E-06 33.0 5.7 45 10-54 15-59 (303)
15 PF11710 Git3: G protein-coupl 94.9 0.44 9.6E-06 28.4 7.5 32 30-61 30-61 (201)
16 PF10321 7TM_GPCR_Srt: Serpent 93.4 1.3 2.8E-05 28.2 8.0 45 8-52 39-83 (313)
17 PF10317 7TM_GPCR_Srd: Serpent 93.3 0.61 1.3E-05 29.0 6.2 46 8-53 5-51 (292)
18 PF10316 7TM_GPCR_Srbc: Serpen 74.2 18 0.00038 22.8 5.4 51 12-62 16-66 (273)
19 PF01102 Glycophorin_A: Glycop 73.9 6.9 0.00015 21.8 3.2 23 13-35 74-96 (122)
20 PF03402 V1R: Vomeronasal orga 67.8 24 0.00051 22.2 5.0 28 31-58 6-34 (265)
21 PF00002 7tm_2: 7 transmembran 67.6 3.1 6.8E-05 24.8 1.1 37 16-52 15-51 (242)
22 PF11446 DUF2897: Protein of u 62.6 16 0.00034 17.5 2.8 11 15-25 15-25 (55)
23 PF08114 PMP1_2: ATPase proteo 60.0 6.1 0.00013 17.8 1.0 23 7-29 10-32 (43)
24 PF10329 DUF2417: Region of un 55.8 37 0.0008 21.0 4.2 46 11-57 79-124 (232)
25 COG1230 CzcD Co/Zn/Cd efflux s 46.0 79 0.0017 20.3 8.2 61 7-69 126-187 (296)
26 PF10323 7TM_GPCR_Srv: Serpent 45.8 73 0.0016 19.8 6.1 22 32-53 29-50 (283)
27 PF10319 7TM_GPCR_Srj: Serpent 38.5 64 0.0014 20.9 3.5 43 11-53 14-57 (310)
28 PF10327 7TM_GPCR_Sri: Serpent 34.8 30 0.00065 21.8 1.6 53 12-64 19-75 (303)
29 PF09882 DUF2109: Predicted me 33.5 74 0.0016 16.4 5.0 38 22-59 14-51 (78)
30 PF02116 STE2: Fungal pheromon 32.7 1.3E+02 0.0029 19.1 4.7 20 23-44 53-72 (284)
31 PF10326 7TM_GPCR_Str: Serpent 31.8 45 0.00097 20.7 2.0 44 11-54 8-52 (307)
32 PHA03164 hypothetical protein; 29.3 89 0.0019 16.1 2.5 23 30-52 53-75 (88)
33 PF02118 Srg: Srg family chemo 26.0 1.6E+02 0.0034 17.8 6.6 42 9-50 5-49 (275)
34 PF14364 DUF4408: Domain of un 24.1 73 0.0016 13.6 1.4 12 16-27 19-30 (34)
35 TIGR01477 RIFIN variant surfac 23.7 1.6E+02 0.0035 19.6 3.5 17 17-33 323-339 (353)
36 PRK03557 zinc transporter ZitB 22.8 2.1E+02 0.0046 18.1 8.6 23 12-34 128-150 (312)
37 PTZ00046 rifin; Provisional 21.6 1.9E+02 0.0041 19.3 3.5 17 17-33 328-344 (358)
38 PF10873 DUF2668: Protein of u 21.5 1.6E+02 0.0035 17.1 2.8 27 4-30 64-90 (155)
39 PF08727 P3A: Poliovirus 3A pr 21.4 1.1E+02 0.0024 14.8 1.9 24 44-68 19-42 (57)
No 1
>KOG4219|consensus
Probab=99.43 E-value=6.8e-14 Score=89.05 Aligned_cols=59 Identities=25% Similarity=0.400 Sum_probs=52.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhcccC
Q psy4355 10 NYKLYFNYRNVFVIAAILLEKNLQSVANYLIVSLAVADLMVACLVMPLGAVYELNAKCF 68 (71)
Q Consensus 10 ~~~l~~~~gN~~vi~~~~~~~~l~~~~~~~l~nLa~aDll~~~~~~p~~~~~~~~~~~~ 68 (71)
+..+.+++||++|+|++..+|++|+.+|+|++|||+||+.++++..|+...+.+.+.|+
T Consensus 44 ~l~~vAv~GN~iVlwIil~hrrMRtvtnyfL~NLAfADl~~s~Fn~~f~f~yal~~~W~ 102 (423)
T KOG4219|consen 44 LLVFVAVVGNLIVLWIILAHRRMRTVTNYFLVNLAFADLSMSIFNTVFNFQYALHQEWY 102 (423)
T ss_pred HHHHHHHhcCceEEEEEeehhehhhhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccc
Confidence 34445689999999999999999999999999999999999999999988887777664
No 2
>PHA03234 DNA packaging protein UL33; Provisional
Probab=99.40 E-value=1.9e-12 Score=81.29 Aligned_cols=63 Identities=8% Similarity=0.045 Sum_probs=46.0
Q ss_pred hHHHHHHHHHHHHHHHHHHH--HhhcCcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhcccCCC
Q psy4355 7 DIPNYKLYFNYRNVFVIAAI--LLEKNLQSVANYLIVSLAVADLMVACLVMPLGAVYELNAKCFSE 70 (71)
Q Consensus 7 ~~~~~~l~~~~gN~~vi~~~--~~~~~l~~~~~~~l~nLa~aDll~~~~~~p~~~~~~~~~~~~~~ 70 (71)
...+..++|++||.+++++. .+++++|+++|+|+.|||+||++.+. ..|....+...+|.+|+
T Consensus 38 ~y~~vf~~gl~gN~lvl~v~~~~~~~~~rt~tn~fi~NLAvaDLL~~l-~lp~~~~~~~~~w~fG~ 102 (338)
T PHA03234 38 INGIMLTLIIPMIIIVICTLIIYHKVAKHNATSFYLITLFASDFLHML-CVFFLTLNREALFNFNQ 102 (338)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHH-HHHHHHHHHhCCccCch
Confidence 44556677899999999854 45566799999999999999999954 56766655433333443
No 3
>KOG4220|consensus
Probab=99.23 E-value=2.1e-13 Score=87.41 Aligned_cols=63 Identities=29% Similarity=0.382 Sum_probs=58.1
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHhhcCcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhccc
Q psy4355 5 GPDIPNYKLYFNYRNVFVIAAILLEKNLQSVANYLIVSLAVADLMVACLVMPLGAVYELNAKC 67 (71)
Q Consensus 5 ~~~~~~~~l~~~~gN~~vi~~~~~~~~l~~~~~~~l~nLa~aDll~~~~~~p~~~~~~~~~~~ 67 (71)
+.+...++++.++||++|+..+.-+|++||..|+|+++||+||++.+.+.+|+...+.+.++|
T Consensus 34 ~~v~~~lsLVTv~GNlLVmiSfKvnrqLqTVnNYfLfSLAcADliIG~~SMnl~t~Y~lmg~W 96 (503)
T KOG4220|consen 34 VVVTGSLSLVTVVGNLLVMISFKVNRQLQTVNNYFLFSLACADLIIGAFSMNLYTTYTLMGYW 96 (503)
T ss_pred ehhhhHHHHHhhhccEEEEEEEEecceeeeecceeehHHHHhhhhhheeechHHHHHHHHccc
Confidence 455667888889999999999999999999999999999999999999999999999988887
No 4
>PHA02638 CC chemokine receptor-like protein; Provisional
Probab=99.21 E-value=1.5e-10 Score=74.62 Aligned_cols=61 Identities=18% Similarity=0.307 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhcccCCC
Q psy4355 8 IPNYKLYFNYRNVFVIAAILLEKNLQSVANYLIVSLAVADLMVACLVMPLGAVYELNAKCFSE 70 (71)
Q Consensus 8 ~~~~~l~~~~gN~~vi~~~~~~~~l~~~~~~~l~nLa~aDll~~~~~~p~~~~~~~~~~~~~~ 70 (71)
..+.+++|++||.+++++.. +|++|+++|+++.|||++|++. ....|+.+.+...+|.+|+
T Consensus 105 y~lvfvlgliGN~LVl~il~-~k~lrt~t~i~llnLAisDLl~-~l~lPf~i~~~~~~W~fg~ 165 (417)
T PHA02638 105 YIIIFILGLFGNAAIIMILF-CKKIKTITDIYIFNLAISDLIF-VIDFPFIIYNEFDQWIFGD 165 (417)
T ss_pred HHHHHHHHHHHHHHHHHHHH-hccCCCHhHHHHHHHHHHHHHH-HHHHHHHHHHHhccccccc
Confidence 44566677999999997765 4788999999999999999998 5789998876644333443
No 5
>PHA02834 chemokine receptor-like protein; Provisional
Probab=99.17 E-value=1.9e-10 Score=71.62 Aligned_cols=60 Identities=23% Similarity=0.355 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhcccCC
Q psy4355 8 IPNYKLYFNYRNVFVIAAILLEKNLQSVANYLIVSLAVADLMVACLVMPLGAVYELNAKCFS 69 (71)
Q Consensus 8 ~~~~~l~~~~gN~~vi~~~~~~~~l~~~~~~~l~nLa~aDll~~~~~~p~~~~~~~~~~~~~ 69 (71)
..+..+++++||+++++++.+++++ +++|+|+.|||++|++. ....|+.+.....++.+|
T Consensus 35 ~~li~v~~~~gN~lVi~vi~~~~~~-~~~n~~i~nLAiaDll~-~~~lP~~i~~~~~~w~~g 94 (323)
T PHA02834 35 YILLFIFGLIGNVLVIAVLIVKRFM-FVVDVYLFNIAMSDLML-VFSFPFIIHNDLNEWIFG 94 (323)
T ss_pred HHHHHHHHHhhHHHHHHHHHhcccc-chhhhhhHHHHHHHHHH-HHHHHHHHHHHcCCcCCc
Confidence 3445556799999999988776554 57899999999999986 678998876655443344
No 6
>PF00001 7tm_1: 7 transmembrane receptor (rhodopsin family) Rhodopsin-like GPCR superfamily signature 5-hydroxytryptamine 7 receptor signature bradykinin receptor signature gastrin receptor signature melatonin receptor signature olfactory receptor signature; InterPro: IPR000276 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The rhodopsin-like GPCRs themselves represent a widespread protein family that includes hormone, neurotransmitter and light receptors, all of which transduce extracellular signals through interaction with guanine nucleotide-binding (G) proteins. Although their activating ligands vary widely in structure and character, the amino acid sequences of the receptors are very similar and are believed to adopt a common structural framework comprising 7 transmembrane (TM) helices [, , ].; GO: 0007186 G-protein coupled receptor protein signaling pathway, 0016021 integral to membrane; PDB: 2KI9_A 3QAK_A 2YDV_A 3VGA_A 3PWH_A 3RFM_A 3EML_A 3VG9_A 3REY_A 3UZA_A ....
Probab=98.99 E-value=2.4e-09 Score=62.64 Aligned_cols=50 Identities=36% Similarity=0.483 Sum_probs=43.5
Q ss_pred HHHHHHHHHHhhcCcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhccc
Q psy4355 18 RNVFVIAAILLEKNLQSVANYLIVSLAVADLMVACLVMPLGAVYELNAKC 67 (71)
Q Consensus 18 gN~~vi~~~~~~~~l~~~~~~~l~nLa~aDll~~~~~~p~~~~~~~~~~~ 67 (71)
||.+++.++.++|++|++.++++.|||++|++.+....|........++|
T Consensus 1 GN~lvi~~~~~~~~~~~~~~~~l~~Lav~Dll~~~~~~~~~~~~~~~~~~ 50 (257)
T PF00001_consen 1 GNILVILVILRSKRLRTPSNILLLNLAVADLLVGLFCIPFYIYSLLFDDW 50 (257)
T ss_dssp HHHHHHHHHHHSGGG-SHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHSSC
T ss_pred CchhehhhhhhhccCCChhHHHHHHHHHHHHhhccccccccccccccccc
Confidence 89999999999999999999999999999999988888888777665444
No 7
>PHA03235 DNA packaging protein UL33; Provisional
Probab=98.89 E-value=1.1e-08 Score=65.90 Aligned_cols=53 Identities=19% Similarity=0.145 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh-cC-cccHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q psy4355 8 IPNYKLYFNYRNVFVIAAILLE-KN-LQSVANYLIVSLAVADLMVACLVMPLGAVY 61 (71)
Q Consensus 8 ~~~~~l~~~~gN~~vi~~~~~~-~~-l~~~~~~~l~nLa~aDll~~~~~~p~~~~~ 61 (71)
..+.+++|++||+++++++.++ |+ .++.+|+|+.|||++|++. ...+|+.+..
T Consensus 39 ~~li~vvGiigN~lVL~~~~~~~r~~~~~~~~~~I~NLAvsDLl~-l~~lP~~i~~ 93 (409)
T PHA03235 39 NLLIISVGGPLNLIVLVTQLLANRVHGFSTPTLYMTNLYLANLLT-VFVLPFIMLS 93 (409)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcccCCccHHHHHHHHHHHHHH-HHHHHHHHHh
Confidence 3445566789999999875433 32 2356678999999999987 6788987653
No 8
>PHA03087 G protein-coupled chemokine receptor-like protein; Provisional
Probab=98.81 E-value=9.8e-09 Score=63.87 Aligned_cols=58 Identities=17% Similarity=0.315 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhccc
Q psy4355 8 IPNYKLYFNYRNVFVIAAILLEKNLQSVANYLIVSLAVADLMVACLVMPLGAVYELNAKC 67 (71)
Q Consensus 8 ~~~~~l~~~~gN~~vi~~~~~~~~l~~~~~~~l~nLa~aDll~~~~~~p~~~~~~~~~~~ 67 (71)
..+.+++|++||++++++..++ ++|++.|+++.|+|++|++.+ ...|........+.|
T Consensus 47 ~~~i~~~gl~gN~lvl~~~~~~-~~~~~~~~ll~~laisDll~~-~~~~~~~~~~~~~~~ 104 (335)
T PHA03087 47 YSTIFFFGLVGNIIVIYVLTKT-KIKTPMDIYLLNLAVSDLLFV-MTLPFQIYYYILFQW 104 (335)
T ss_pred HHHHHHHHHHhhHhEEeeehhc-cccCchHHHHHHHHHHHHHHH-HhHHHHHHHHhCCCC
Confidence 3345566799999999988777 889999999999999999874 467776645444444
No 9
>PF10320 7TM_GPCR_Srsx: Serpentine type 7TM GPCR chemoreceptor Srsx; InterPro: IPR019424 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class sx (Srsx), which is a solo family amongst the superfamilies of chemoreceptors. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' [].
Probab=98.47 E-value=8.1e-08 Score=58.53 Aligned_cols=48 Identities=27% Similarity=0.312 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHHHhhcCcccHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q psy4355 14 YFNYRNVFVIAAILLEKNLQSVANYLIVSLAVADLMVACLVMPLGAVY 61 (71)
Q Consensus 14 ~~~~gN~~vi~~~~~~~~l~~~~~~~l~nLa~aDll~~~~~~p~~~~~ 61 (71)
+|+.||..++.++.++|++|+|+++++..+|++|++......|.....
T Consensus 3 ig~~gN~~~i~~~~~~~~Lrs~~~~li~~~~~~d~~~~~~~~~~~~~~ 50 (257)
T PF10320_consen 3 IGLFGNLLLIILIFRNKSLRSPCYILICILCFADLICLLGTLPFMLFL 50 (257)
T ss_pred EEEEccHHHHHHHHhccccccchHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 467899999999999999999999999999999999988888876633
No 10
>KOG2087|consensus
Probab=97.47 E-value=6.3e-05 Score=48.12 Aligned_cols=55 Identities=20% Similarity=0.220 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCcccHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q psy4355 8 IPNYKLYFNYRNVFVIAAILLEKNLQSVANYLIVSLAVADLMVACLVMPLGAVYE 62 (71)
Q Consensus 8 ~~~~~l~~~~gN~~vi~~~~~~~~l~~~~~~~l~nLa~aDll~~~~~~p~~~~~~ 62 (71)
.++...+++.||.+|++.....+...++..+++.|+|++|+++++...-....+.
T Consensus 31 vW~i~~lAi~gN~~Vl~~~~~~~~~~~~~~~li~~la~ad~~mGiYl~~ia~vD~ 85 (363)
T KOG2087|consen 31 VWVIALLAIVGNLLVLLTRFTSRYELNSHRFLICNLAFADLLMGIYLGLIASVDA 85 (363)
T ss_pred hhhhhhHHhccCeeeeeeeeehhhhccchHHHHHHHHHHHHHcchHHHHHHHhhH
Confidence 3455667789999999888777777788899999999999999876655555443
No 11
>PF10328 7TM_GPCR_Srx: Serpentine type 7TM GPCR chemoreceptor Srx; InterPro: IPR019430 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class x (Srx) from the Srg superfamily [, ]. Srg receptors contain seven hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures.
Probab=96.81 E-value=0.011 Score=36.15 Aligned_cols=42 Identities=21% Similarity=0.233 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHHHHHhhcCcccHHHHHHHHHHHHHHHHHHH
Q psy4355 12 KLYFNYRNVFVIAAILLEKNLQSVANYLIVSLAVADLMVACL 53 (71)
Q Consensus 12 ~l~~~~gN~~vi~~~~~~~~l~~~~~~~l~nLa~aDll~~~~ 53 (71)
+++|+..|.+++..+.+.+++|++-+.+-.+.|++|.+....
T Consensus 4 s~~G~~~N~~v~~~~~~~~~~~~sF~~l~~~~a~~n~i~~~~ 45 (274)
T PF10328_consen 4 SIIGIILNWLVFIIIFKLKSLRNSFGILCASQAIANIIICLI 45 (274)
T ss_pred eHHHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHH
Confidence 567888999999999999999999999999999999998653
No 12
>PF10324 7TM_GPCR_Srw: Serpentine type 7TM GPCR chemoreceptor Srw; InterPro: IPR019427 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class w (Srw), which is a solo family amongst the superfamilies of chemoreceptors. The genes encoding Srw do not appear to be under as strong an adaptive evolutionary pressure as those of Srz [].
Probab=96.58 E-value=0.0073 Score=37.54 Aligned_cols=50 Identities=18% Similarity=0.384 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHHHHHhhcCccc-HHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q psy4355 12 KLYFNYRNVFVIAAILLEKNLQS-VANYLIVSLAVADLMVACLVMPLGAVYE 62 (71)
Q Consensus 12 ~l~~~~gN~~vi~~~~~~~~l~~-~~~~~l~nLa~aDll~~~~~~p~~~~~~ 62 (71)
+.+|+.+|.+-+.+. .+|++|+ +.|.++...|++|+.......+......
T Consensus 7 ~~~g~~~N~~h~~VL-trk~mR~~~in~~l~~Iai~Dl~~~~~~~~~~~~~~ 57 (318)
T PF10324_consen 7 SIFGLFINIFHLIVL-TRKSMRSSSINILLIGIAICDLLYMLSILIWELFFF 57 (318)
T ss_pred eHHHHHHHHHHhhhc-CChhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456788998877766 5567786 8999999999999998888887776444
No 13
>PF05296 TAS2R: Mammalian taste receptor protein (TAS2R); InterPro: IPR007960 This family consists of several forms of mammalian taste receptor proteins (TAS2Rs). TAS2Rs are G protein-coupled receptors expressed in subsets of taste receptor cells of the tongue and palate epithelia and are organised in the genome in clusters. The proteins are genetically linked to loci that influence bitter perception in mice and humans [].; GO: 0004930 G-protein coupled receptor activity, 0007186 G-protein coupled receptor protein signaling pathway, 0050909 sensory perception of taste, 0016021 integral to membrane
Probab=96.23 E-value=0.08 Score=33.26 Aligned_cols=48 Identities=13% Similarity=0.133 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHHHHHHHh---hcCcccHHHHHHHHHHHHHHHHHHHHhH
Q psy4355 9 PNYKLYFNYRNVFVIAAILL---EKNLQSVANYLIVSLAVADLMVACLVMP 56 (71)
Q Consensus 9 ~~~~l~~~~gN~~vi~~~~~---~~~l~~~~~~~l~nLa~aDll~~~~~~p 56 (71)
..-.++|+.||+.++.+-.. +++.-.|.+..+.+||++.++.-....-
T Consensus 14 ~~~~~~Gi~~N~FI~~vn~~~w~k~~~l~~~d~IL~~La~sr~~l~~~~~~ 64 (303)
T PF05296_consen 14 VVEFIIGILGNGFIVLVNCSDWVKSRKLSPSDQILTSLAISRILLQWVILL 64 (303)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHcCCCCChHHHHHHHHHHHHHHHHHHHHH
Confidence 34556789999998876542 3334478999999999999987554433
No 14
>PF05462 Dicty_CAR: Slime mold cyclic AMP receptor
Probab=95.19 E-value=0.1 Score=33.04 Aligned_cols=45 Identities=24% Similarity=0.268 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCcccHHHHHHHHHHHHHHHHHHHH
Q psy4355 10 NYKLYFNYRNVFVIAAILLEKNLQSVANYLIVSLAVADLMVACLV 54 (71)
Q Consensus 10 ~~~l~~~~gN~~vi~~~~~~~~l~~~~~~~l~nLa~aDll~~~~~ 54 (71)
+-+.++++|-++++....+.|+.|++.+-++.-++++|++.....
T Consensus 15 ~~s~lSllGclfiI~tf~~~k~~r~~~~rli~yl~~~~ll~~v~~ 59 (303)
T PF05462_consen 15 VASVLSLLGCLFIIITFCLFKRLRKPINRLIFYLSIANLLTNVAS 59 (303)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHH
Confidence 345566899999999999999999999999999999999865443
No 15
>PF11710 Git3: G protein-coupled glucose receptor regulating Gpa2; InterPro: IPR023041 This entry contains a functionally uncharacterised region belonging to the Git3 G-protein coupled receptor. Git3 is one of six proteins required for glucose-triggered adenylate cyclase activation, and is a G protein-coupled receptor responsible for the activation of adenylate cyclase through Gpa2 - heterotrimeric G protein alpha subunit, part of the glucose-detection pathway. Git3 contains seven predicted transmembrane domains, a third cytoplasmic loop and a cytoplasmic tail []. This is the conserved N-terminal domain of the member proteins.
Probab=94.85 E-value=0.44 Score=28.38 Aligned_cols=32 Identities=22% Similarity=0.228 Sum_probs=23.0
Q ss_pred cCcccHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q psy4355 30 KNLQSVANYLIVSLAVADLMVACLVMPLGAVY 61 (71)
Q Consensus 30 ~~l~~~~~~~l~nLa~aDll~~~~~~p~~~~~ 61 (71)
+++|...+-++.||.++|++.++..+.....+
T Consensus 30 ~r~~~fR~~LIl~L~~aD~~qal~~~i~~~~~ 61 (201)
T PF11710_consen 30 YRRRSFRHQLILNLLLADFIQALAFLISPIRW 61 (201)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566677799999999999877655433333
No 16
>PF10321 7TM_GPCR_Srt: Serpentine type 7TM GPCR chemoreceptor Srt; InterPro: IPR019425 Chemoreception is mediated in Caenorhabditis elegans by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs) of proteins which are of the serpentine type []. Srt is a member of the Srg superfamily of chemoreceptors. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' [].
Probab=93.35 E-value=1.3 Score=28.22 Aligned_cols=45 Identities=13% Similarity=0.145 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCcccHHHHHHHHHHHHHHHHHH
Q psy4355 8 IPNYKLYFNYRNVFVIAAILLEKNLQSVANYLIVSLAVADLMVAC 52 (71)
Q Consensus 8 ~~~~~l~~~~gN~~vi~~~~~~~~l~~~~~~~l~nLa~aDll~~~ 52 (71)
..+++++...-....+.++.+++..|.+.|-...-||+.|+....
T Consensus 39 ~~~~g~~~~~lY~p~~~~i~~~~~~k~~~ykiM~~L~i~Di~~l~ 83 (313)
T PF10321_consen 39 FLIFGIIIIILYIPCLIAIFKKKLFKMSCYKIMFFLAIFDIIQLF 83 (313)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHH
Confidence 344555555667777888888777789999999999999999754
No 17
>PF10317 7TM_GPCR_Srd: Serpentine type 7TM GPCR chemoreceptor Srd; InterPro: IPR019421 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents the chemoreceptor Srd [].
Probab=93.29 E-value=0.61 Score=28.95 Aligned_cols=46 Identities=15% Similarity=0.212 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhc-CcccHHHHHHHHHHHHHHHHHHH
Q psy4355 8 IPNYKLYFNYRNVFVIAAILLEK-NLQSVANYLIVSLAVADLMVACL 53 (71)
Q Consensus 8 ~~~~~l~~~~gN~~vi~~~~~~~-~l~~~~~~~l~nLa~aDll~~~~ 53 (71)
..+++.+|+.-|.+.+..+.++. +.-+...+++.|-|+.|+..+..
T Consensus 5 ~~~~~~~~~~~n~~Ll~~i~~~tp~~l~~~~~~l~~~~~~~~~~~~~ 51 (292)
T PF10317_consen 5 HPIFFILGIILNILLLYLIIFKTPKSLRTYSILLLNTAIFDLISIIS 51 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34577788899999998776554 32345678999999999997543
No 18
>PF10316 7TM_GPCR_Srbc: Serpentine type 7TM GPCR chemoreceptor Srbc ; InterPro: IPR019420 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class b (Srb) from the Sra superfamily []. Srb receptors contain 6-8 hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures. Srbc is a solo family amongst the superfamilies of chemoreceptors.
Probab=74.20 E-value=18 Score=22.78 Aligned_cols=51 Identities=14% Similarity=0.085 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHHHHhhcCcccHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q psy4355 12 KLYFNYRNVFVIAAILLEKNLQSVANYLIVSLAVADLMVACLVMPLGAVYE 62 (71)
Q Consensus 12 ~l~~~~gN~~vi~~~~~~~~l~~~~~~~l~nLa~aDll~~~~~~p~~~~~~ 62 (71)
+.+....|...++.+...|+.|++--.++---...|...+....+......
T Consensus 16 s~~~~~iN~~lL~~if~~Kk~kk~~l~LfY~Rf~~D~~~~~~~~~~~~~~~ 66 (273)
T PF10316_consen 16 SIITCLINFYLLYSIFYSKKKKKPDLSLFYFRFAIDVFYGFSVFIYLIYYI 66 (273)
T ss_pred HHHHHHHHHHHHHHHHhccccCCCCEEeeHHHHHHHHHHHHHHHHHHHHHH
Confidence 333467898888887766654444333444457789999877766554443
No 19
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=73.86 E-value=6.9 Score=21.77 Aligned_cols=23 Identities=9% Similarity=-0.038 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHhhcCcccH
Q psy4355 13 LYFNYRNVFVIAAILLEKNLQSV 35 (71)
Q Consensus 13 l~~~~gN~~vi~~~~~~~~l~~~ 35 (71)
+.|++|=++.+....|+++.|.+
T Consensus 74 ~aGvIg~Illi~y~irR~~Kk~~ 96 (122)
T PF01102_consen 74 MAGVIGIILLISYCIRRLRKKSS 96 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHS----
T ss_pred HHHHHHHHHHHHHHHHHHhccCC
Confidence 33466655555444444444443
No 20
>PF03402 V1R: Vomeronasal organ pheromone receptor family, V1R; InterPro: IPR004072 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The rhodopsin-like GPCRs themselves represent a widespread protein family that includes hormone, neurotransmitter and light receptors, all of which transduce extracellular signals through interaction with guanine nucleotide-binding (G) proteins. Although their activating ligands vary widely in structure and character, the amino acid sequences of the receptors are very similar and are believed to adopt a common structural framework comprising 7 transmembrane (TM) helices [, , ]. Pheromones have evolved in all animal phyla, to signal sex and dominance status, and are responsible for stereotypical social and sexual behaviour among members of the same species. In mammals, these chemical signals are believed to be detected primarily by the vomeronasal organ (VNO), a chemosensory organ located at the base of the nasal septum []. The VNO is present in most amphibia, reptiles and non-primate mammals but is absent in birds, adult catarrhine monkeys and apes []. An active role for the human VNO in the detection of pheromones is disputed; the VNO is clearly present in the foetus but appears to be atrophied or absent in adults. Three distinct families of putative pheromone receptors have been identified in the vomeronasal organ (V1Rs, V2Rs and V3Rs). All are G protein-coupled receptors but are only distantly related to the receptors of the main olfactory system, highlighting their different role []. The V1 receptors share between 50 and 90% sequence identity but have little similarity to other families of G protein-coupled receptors. They appear to be distantly related to the mammalian T2R bitter taste receptors and the rhodopsin-like GPCRs []. In rat, the family comprises 30-40 genes. These are expressed in the apical regions of the VNO, in neurons expressing Gi2. Coupling of the receptors to this protein mediates inositol trisphosphate signalling []. A number of human V1 receptor homologues have also been found. The majority of these human sequences are pseudogenes [] but an apparently functional receptor has been identified that is expressed in the human olfactory system [].; GO: 0016503 pheromone receptor activity, 0007186 G-protein coupled receptor protein signaling pathway, 0016021 integral to membrane
Probab=67.81 E-value=24 Score=22.19 Aligned_cols=28 Identities=18% Similarity=0.318 Sum_probs=20.8
Q ss_pred CcccHHHHHHHHHHHHHHHHHH-HHhHHH
Q psy4355 31 NLQSVANYLIVSLAVADLMVAC-LVMPLG 58 (71)
Q Consensus 31 ~l~~~~~~~l~nLa~aDll~~~-~~~p~~ 58 (71)
+..+|.+..+.|||+++.+... -++|..
T Consensus 6 ~r~kp~dlIl~hLa~aN~lvLl~rGip~~ 34 (265)
T PF03402_consen 6 HRLKPIDLILIHLALANILVLLSRGIPQT 34 (265)
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 4467899999999999998632 355643
No 21
>PF00002 7tm_2: 7 transmembrane receptor (Secretin family); InterPro: IPR000832 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The secretin-like GPCRs include secretin [], calcitonin [], parathyroid hormone/parathyroid hormone-related peptides [] and vasoactive intestinal peptide [], all of which activate adenylyl cyclase and the phosphatidyl-inositol-calcium pathway. These receptors contain seven transmembrane regions, in a manner reminiscent of the rhodopsins and other receptors believed to interact with G-proteins (however there is no significant sequence identity between these families, the secretin-like receptors thus bear their own unique '7TM' signature). Their N terminus is probably located on the extracellular side of the membrane and potentially glycosylated. This N-terminal region contains a long conserved region which allow the binding of large peptidic ligand such as glucagon, secretin, VIP and PACAP; this region contains five conserved cysteines residues which could be involved in disulphide bond. The C-terminal region of these receptor is probably cytoplasmic. Every receptor gene in this family is encoded on multiple exons, and several of these genes are alternatively spliced to yield functionally distinct products. ; GO: 0004930 G-protein coupled receptor activity, 0007186 G-protein coupled receptor protein signaling pathway, 0016021 integral to membrane; PDB: 3L2J_A 1BL1_A.
Probab=67.63 E-value=3.1 Score=24.75 Aligned_cols=37 Identities=22% Similarity=0.240 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhhcCcccHHHHHHHHHHHHHHHHHH
Q psy4355 16 NYRNVFVIAAILLEKNLQSVANYLIVSLAVADLMVAC 52 (71)
Q Consensus 16 ~~gN~~vi~~~~~~~~l~~~~~~~l~nLa~aDll~~~ 52 (71)
+.+-.+++......|++|+..+....|+++++++...
T Consensus 15 i~~ll~~i~~~~~~r~lr~~~~~i~~~l~~sll~~~~ 51 (242)
T PF00002_consen 15 IICLLLTIITYLLFRKLRSFRNKIHLNLCLSLLLANL 51 (242)
T ss_dssp -------------------------------------
T ss_pred HHHHHHHHHHHHHHHhhcccchhhhhhhHHHHHHHHH
Confidence 4444444444445577777778888899999887644
No 22
>PF11446 DUF2897: Protein of unknown function (DUF2897); InterPro: IPR021550 This is a bacterial family of uncharacterised proteins.
Probab=62.62 E-value=16 Score=17.46 Aligned_cols=11 Identities=9% Similarity=0.018 Sum_probs=7.9
Q ss_pred HHHHHHHHHHH
Q psy4355 15 FNYRNVFVIAA 25 (71)
Q Consensus 15 ~~~gN~~vi~~ 25 (71)
.++||+.++--
T Consensus 15 vIigNia~LK~ 25 (55)
T PF11446_consen 15 VIIGNIAALKY 25 (55)
T ss_pred HHHhHHHHHHH
Confidence 37899887743
No 23
>PF08114 PMP1_2: ATPase proteolipid family; InterPro: IPR012589 This family consists of small proteolipids associated with the plasma membrane H+ ATPase. Two proteolipids (PMP1 and PMP2) are associated with the ATPase and both genes are similarly expressed in the wild-type strain of yeast. No modification of the level of transcription of one PMP gene is detected in a strain deleted of the other. Though both proteolipids show similarity with other small proteolipids associated with other cation -transporting ATPases, their functions remain unclear [].
Probab=59.95 E-value=6.1 Score=17.83 Aligned_cols=23 Identities=17% Similarity=-0.164 Sum_probs=15.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhh
Q psy4355 7 DIPNYKLYFNYRNVFVIAAILLE 29 (71)
Q Consensus 7 ~~~~~~l~~~~gN~~vi~~~~~~ 29 (71)
++.+++++++.|-.++.....|+
T Consensus 10 VIlVF~lVglv~i~iva~~iYRK 32 (43)
T PF08114_consen 10 VILVFCLVGLVGIGIVALFIYRK 32 (43)
T ss_pred eeeehHHHHHHHHHHHHHHHHHH
Confidence 45567778888877776665554
No 24
>PF10329 DUF2417: Region of unknown function (DUF2417); InterPro: IPR019431 This entry represents a family of fungal proteins with no known function. In some cases these proteins also contain an alpha/beta hydrolase fold (IPR000073 from INTERPRO).
Probab=55.82 E-value=37 Score=21.04 Aligned_cols=46 Identities=22% Similarity=0.356 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHHHHhhcCcccHHHHHHHHHHHHHHHHHHHHhHH
Q psy4355 11 YKLYFNYRNVFVIAAILLEKNLQSVANYLIVSLAVADLMVACLVMPL 57 (71)
Q Consensus 11 ~~l~~~~gN~~vi~~~~~~~~l~~~~~~~l~nLa~aDll~~~~~~p~ 57 (71)
|..+++..|...++.+.-..+.-...++.+.-|-..|++. ....|.
T Consensus 79 l~~lsl~~~~~~L~Ff~vpS~~~r~l~~vl~~Lllvdlil-il~V~~ 124 (232)
T PF10329_consen 79 LTLLSLITNLFNLWFFGVPSKLERILNIVLAGLLLVDLIL-ILAVPY 124 (232)
T ss_pred HHHHHHHHHHHHHHheecCcHHHHHHHHHHHHHHHHHHHH-HHhhHh
Confidence 5555677777777765555555556778888888888887 445553
No 25
>COG1230 CzcD Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism]
Probab=46.00 E-value=79 Score=20.33 Aligned_cols=61 Identities=10% Similarity=-0.039 Sum_probs=36.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhcCcccHHHHHHHHH-HHHHHHHHHHHhHHHHHHHhhcccCC
Q psy4355 7 DIPNYKLYFNYRNVFVIAAILLEKNLQSVANYLIVSL-AVADLMVACLVMPLGAVYELNAKCFS 69 (71)
Q Consensus 7 ~~~~~~l~~~~gN~~vi~~~~~~~~l~~~~~~~l~nL-a~aDll~~~~~~p~~~~~~~~~~~~~ 69 (71)
......++|++-|.+..+...+.++ .-.|.=-..| +++|.+.++..+--.+.-..++|.|.
T Consensus 126 ~ml~va~~GL~vN~~~a~ll~~~~~--~~lN~r~a~LHvl~D~Lgsv~vIia~i~i~~~~w~~~ 187 (296)
T COG1230 126 GMLVVAIIGLVVNLVSALLLHKGHE--ENLNMRGAYLHVLGDALGSVGVIIAAIVIRFTGWSWL 187 (296)
T ss_pred chHHHHHHHHHHHHHHHHHhhCCCc--ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcc
Confidence 3445667788899998888766522 1122222222 35799987666655555555665443
No 26
>PF10323 7TM_GPCR_Srv: Serpentine type 7TM GPCR chemoreceptor Srv; InterPro: IPR019426 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class v (Srv) from the Srg superfamily [, ]. Srg receptors contain seven hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures.
Probab=45.82 E-value=73 Score=19.83 Aligned_cols=22 Identities=18% Similarity=0.356 Sum_probs=18.5
Q ss_pred cccHHHHHHHHHHHHHHHHHHH
Q psy4355 32 LQSVANYLIVSLAVADLMVACL 53 (71)
Q Consensus 32 l~~~~~~~l~nLa~aDll~~~~ 53 (71)
.+++-+-.+.+-+++|++....
T Consensus 29 ~~~~Fy~l~~~~~iaDi~~~~~ 50 (283)
T PF10323_consen 29 FKSTFYTLLIQHCIADILSMLF 50 (283)
T ss_pred cCCHHHHHHHHHHHHHHHHHHH
Confidence 5688899999999999987553
No 27
>PF10319 7TM_GPCR_Srj: Serpentine type 7TM GPCR chemoreceptor Srj; InterPro: IPR019423 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class j (Srj) from the Str superfamily [, ]. The Srj family is designated as the out-group based on its location in preliminary phylogenetic analyses of the entire superfamily [].
Probab=38.45 E-value=64 Score=20.93 Aligned_cols=43 Identities=23% Similarity=0.281 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHHHHHhhcCcccH-HHHHHHHHHHHHHHHHHH
Q psy4355 11 YKLYFNYRNVFVIAAILLEKNLQSV-ANYLIVSLAVADLMVACL 53 (71)
Q Consensus 11 ~~l~~~~gN~~vi~~~~~~~~l~~~-~~~~l~nLa~aDll~~~~ 53 (71)
++..+.+-|.+.++.+..+|+.+-- -.+++.-.|+-|++.++.
T Consensus 14 ~~~lsf~~Np~fiyli~~~~~~~~G~Yr~LL~~Fa~fn~~~S~~ 57 (310)
T PF10319_consen 14 FGILSFIVNPIFIYLIFTEKKSQFGNYRYLLLFFAIFNLIYSVV 57 (310)
T ss_pred HHHHHHHHhhhhheeEEcccccccccHHHHHHHHHHHHHHHHHH
Confidence 5667788899999888877766533 346777889999987663
No 28
>PF10327 7TM_GPCR_Sri: Serpentine type 7TM GPCR chemoreceptor Sri; InterPro: IPR019429 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents Sri, which is part of the Str superfamily of chemoreceptors.
Probab=34.77 E-value=30 Score=21.84 Aligned_cols=53 Identities=19% Similarity=0.224 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHHHH-hhcCcccHHHHHH---HHHHHHHHHHHHHHhHHHHHHHhh
Q psy4355 12 KLYFNYRNVFVIAAIL-LEKNLQSVANYLI---VSLAVADLMVACLVMPLGAVYELN 64 (71)
Q Consensus 12 ~l~~~~gN~~vi~~~~-~~~~l~~~~~~~l---~nLa~aDll~~~~~~p~~~~~~~~ 64 (71)
+.+++.-|.+.+..+. +.+++++..++++ ....++|+-.+...-|....-...
T Consensus 19 g~iS~~~n~~~iyLi~fks~k~~~fry~ll~~Qi~~~l~di~~t~L~qpipLfP~~a 75 (303)
T PF10327_consen 19 GVISFILNSLGIYLIIFKSPKLDNFRYYLLYFQISCTLTDIHLTFLMQPIPLFPIPA 75 (303)
T ss_pred HHHHHHHHHHHheeEEEecCCccchhhHHHHHHHHHHHhhhhhhhhccchhhcceeE
Confidence 3444778998887654 4455666555544 334568999888888876655443
No 29
>PF09882 DUF2109: Predicted membrane protein (DUF2109); InterPro: IPR019214 This entry is found in various hypothetical archaeal proteins and has no known function.
Probab=33.54 E-value=74 Score=16.36 Aligned_cols=38 Identities=21% Similarity=0.399 Sum_probs=25.3
Q ss_pred HHHHHHhhcCcccHHHHHHHHHHHHHHHHHHHHhHHHH
Q psy4355 22 VIAAILLEKNLQSVANYLIVSLAVADLMVACLVMPLGA 59 (71)
Q Consensus 22 vi~~~~~~~~l~~~~~~~l~nLa~aDll~~~~~~p~~~ 59 (71)
.+-++..+.+.++-.|.-..|.+++.++....--|+..
T Consensus 14 ~iR~~~~~~r~~KL~yLnv~~F~iaalIaL~i~~P~g~ 51 (78)
T PF09882_consen 14 AIRIFLTKSRARKLLYLNVINFAIAALIALYIKSPMGA 51 (78)
T ss_pred HHHHHHhHhHHHhhhHHHHHHHHHHHHHHHHhCCcHHH
Confidence 33334444555666788888999998887666666543
No 30
>PF02116 STE2: Fungal pheromone mating factor STE2 GPCR; InterPro: IPR000366 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). Little is known about the structure and function of the mating factor receptors, STE2 and STE3. It is believed, however, that they are integral membrane proteins that may be involved in the response to mating factors on the cell membrane [, , ]. The amino acid sequences of both receptors contain high proportions of hydrophobic residues grouped into 7 domains, in a manner reminiscent of the rhodopsins and other receptors believed to interact with G-proteins. However, while a similar 3D framework has been proposed to account for this, there is no significant sequence similarity either between STE2 and STE3, or between these and the rhodopsin-type family: the receptors thus bear their own unique '7TM' signatures.; GO: 0004932 mating-type factor pheromone receptor activity, 0016020 membrane; PDB: 2K9P_A.
Probab=32.71 E-value=1.3e+02 Score=19.12 Aligned_cols=20 Identities=10% Similarity=0.125 Sum_probs=6.1
Q ss_pred HHHHHhhcCcccHHHHHHHHHH
Q psy4355 23 IAAILLEKNLQSVANYLIVSLA 44 (71)
Q Consensus 23 i~~~~~~~~l~~~~~~~l~nLa 44 (71)
++...+++|+|+| .|+.|.+
T Consensus 53 L~llt~~~Krktp--iFilN~~ 72 (284)
T PF02116_consen 53 LWLLTKSEKRKTP--IFILNQA 72 (284)
T ss_dssp HHHHT--S-------HHHHHHH
T ss_pred HHHhcCcccccCh--HHHHHHH
Confidence 3444455555555 4455544
No 31
>PF10326 7TM_GPCR_Str: Serpentine type 7TM GPCR chemoreceptor Str; InterPro: IPR019428 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class r (Str) from the Str superfamily [, ]. Almost a quarter (22.5%) of str and srj family genes and pseudogenes in C. elegans appear to have been newly formed by gene duplications since the species split [].
Probab=31.81 E-value=45 Score=20.66 Aligned_cols=44 Identities=16% Similarity=0.222 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHHHhhcCcccHH-HHHHHHHHHHHHHHHHHH
Q psy4355 11 YKLYFNYRNVFVIAAILLEKNLQSVA-NYLIVSLAVADLMVACLV 54 (71)
Q Consensus 11 ~~l~~~~gN~~vi~~~~~~~~l~~~~-~~~l~nLa~aDll~~~~~ 54 (71)
-...++..|.+.+..+.++.+.+... .+++...|+.|+.++..-
T Consensus 8 ~~~~s~~~N~~Li~Li~~~s~k~~G~Yk~Lm~~fs~~~i~fs~~~ 52 (307)
T PF10326_consen 8 GFVLSLFLNSLLIYLILTKSPKSLGSYKYLMIYFSIFEIIFSILD 52 (307)
T ss_pred HHHHHHHHHHHHHHHHHhccCCCCCCEEEEEehhHHHHHHHHHHH
Confidence 34456788999988876544333322 245556778888876543
No 32
>PHA03164 hypothetical protein; Provisional
Probab=29.32 E-value=89 Score=16.10 Aligned_cols=23 Identities=13% Similarity=0.251 Sum_probs=15.9
Q ss_pred cCcccHHHHHHHHHHHHHHHHHH
Q psy4355 30 KNLQSVANYLIVSLAVADLMVAC 52 (71)
Q Consensus 30 ~~l~~~~~~~l~nLa~aDll~~~ 52 (71)
++.|+.+.+-+..||+|-+++..
T Consensus 53 nrRktftFlvLtgLaIamILfii 75 (88)
T PHA03164 53 NRRKTFTFLVLTGLAIAMILFII 75 (88)
T ss_pred hhhheeehHHHHHHHHHHHHHHH
Confidence 33456677788888888777643
No 33
>PF02118 Srg: Srg family chemoreceptor; InterPro: IPR000609 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class g (Srg) from the Srg superfamily [, ]. Srg receptors contain seven hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures. ; GO: 0004888 transmembrane signaling receptor activity, 0007606 sensory perception of chemical stimulus, 0016020 membrane
Probab=26.01 E-value=1.6e+02 Score=17.77 Aligned_cols=42 Identities=14% Similarity=0.142 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcC--c-ccHHHHHHHHHHHHHHHH
Q psy4355 9 PNYKLYFNYRNVFVIAAILLEKN--L-QSVANYLIVSLAVADLMV 50 (71)
Q Consensus 9 ~~~~l~~~~gN~~vi~~~~~~~~--l-~~~~~~~l~nLa~aDll~ 50 (71)
..|++.+++-+..++.++.++|+ . +++-+-+...=++.+++.
T Consensus 5 ~~Ygi~s~~l~~~~~~~i~~~~~~~~~~~sFy~l~~~d~~~ni~~ 49 (275)
T PF02118_consen 5 LIYGIPSLILYIFILYVIWKSKKKSYFKSSFYRLYIMDLIMNILT 49 (275)
T ss_pred hhHHHHHHHHHHHHHHHHHHhccccccCCccHHHHHHHhHHHHHH
Confidence 45888888888888888877766 3 555555544445555554
No 34
>PF14364 DUF4408: Domain of unknown function (DUF4408)
Probab=24.06 E-value=73 Score=13.61 Aligned_cols=12 Identities=17% Similarity=0.293 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHH
Q psy4355 16 NYRNVFVIAAIL 27 (71)
Q Consensus 16 ~~gN~~vi~~~~ 27 (71)
+++|.+++....
T Consensus 19 v~~N~IIi~i~~ 30 (34)
T PF14364_consen 19 VIVNLIIITIVA 30 (34)
T ss_pred hhhhhHHHHhhh
Confidence 578888776554
No 35
>TIGR01477 RIFIN variant surface antigen, rifin family. This model represents the rifin branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of rifin sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 20 bits.
Probab=23.75 E-value=1.6e+02 Score=19.57 Aligned_cols=17 Identities=18% Similarity=0.096 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHhhcCcc
Q psy4355 17 YRNVFVIAAILLEKNLQ 33 (71)
Q Consensus 17 ~gN~~vi~~~~~~~~l~ 33 (71)
+--.++++.+.|+||.+
T Consensus 323 VLIMvIIYLILRYRRKK 339 (353)
T TIGR01477 323 VLIMVIIYLILRYRRKK 339 (353)
T ss_pred HHHHHHHHHHHHhhhcc
Confidence 33445667777777654
No 36
>PRK03557 zinc transporter ZitB; Provisional
Probab=22.78 E-value=2.1e+02 Score=18.13 Aligned_cols=23 Identities=4% Similarity=-0.094 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHhhcCccc
Q psy4355 12 KLYFNYRNVFVIAAILLEKNLQS 34 (71)
Q Consensus 12 ~l~~~~gN~~vi~~~~~~~~l~~ 34 (71)
.+.+++.|....+...+.++.++
T Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~s 150 (312)
T PRK03557 128 AVAGLLANILSFWLLHHGSEEKN 150 (312)
T ss_pred HHHHHHHHHHHHHHHhcccccCC
Confidence 34456677665554444333333
No 37
>PTZ00046 rifin; Provisional
Probab=21.63 E-value=1.9e+02 Score=19.29 Aligned_cols=17 Identities=18% Similarity=0.096 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHhhcCcc
Q psy4355 17 YRNVFVIAAILLEKNLQ 33 (71)
Q Consensus 17 ~gN~~vi~~~~~~~~l~ 33 (71)
+--.++++.+.|+||.+
T Consensus 328 VLIMvIIYLILRYRRKK 344 (358)
T PTZ00046 328 VLIMVIIYLILRYRRKK 344 (358)
T ss_pred HHHHHHHHHHHHhhhcc
Confidence 33345667777777654
No 38
>PF10873 DUF2668: Protein of unknown function (DUF2668); InterPro: IPR022640 Members in this family of proteins are annotated as cysteine and tyrosine-rich protein 1, however currently no function is known [].
Probab=21.52 E-value=1.6e+02 Score=17.12 Aligned_cols=27 Identities=4% Similarity=-0.028 Sum_probs=14.0
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHhhc
Q psy4355 4 SGPDIPNYKLYFNYRNVFVIAAILLEK 30 (71)
Q Consensus 4 ~~~~~~~~~l~~~~gN~~vi~~~~~~~ 30 (71)
.+.++.+.++.++++-+.+..-.+.++
T Consensus 64 aGIVfgiVfimgvva~i~icvCmc~kn 90 (155)
T PF10873_consen 64 AGIVFGIVFIMGVVAGIAICVCMCMKN 90 (155)
T ss_pred eeeehhhHHHHHHHHHHHHHHhhhhhc
Confidence 344555566666666555544444333
No 39
>PF08727 P3A: Poliovirus 3A protein like; InterPro: IPR014838 The 3A protein is found in positive-strand RNA viruses. It is a critical component of the poliovirus replication complex, and is also an inhibitor of host cell ER to Golgi transport. ; GO: 0003968 RNA-directed RNA polymerase activity, 0004197 cysteine-type endopeptidase activity, 0017111 nucleoside-triphosphatase activity; PDB: 1NG7_A.
Probab=21.40 E-value=1.1e+02 Score=14.78 Aligned_cols=24 Identities=25% Similarity=0.218 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHhHHHHHHHhhcccC
Q psy4355 44 AVADLMVACLVMPLGAVYELNAKCF 68 (71)
Q Consensus 44 a~aDll~~~~~~p~~~~~~~~~~~~ 68 (71)
|++||+- ++--|-...|.-.++|.
T Consensus 19 ~I~DLL~-SV~~~eV~~YC~~~GWI 42 (57)
T PF08727_consen 19 AIADLLR-SVDSPEVREYCEEQGWI 42 (57)
T ss_dssp TTHHHHH-HH--HHHHHHHHHHT--
T ss_pred HHHHHHH-hcCCHHHHHHHHHCCcc
Confidence 5789997 45667766666666664
Done!