RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy4355
(71 letters)
>2rh1_A Beta-2-adrenergic receptor/T4-lysozyme chimera; GPCR, 7TM, fusion,
lipidic cubic phase, lipidic, mesophase, cholesterol,
membrane protein; HET: MAL CAU CLR PLM 12P; 2.40A {Homo
sapiens} PDB: 3p0g_A* 3d4s_A* 3ny8_A* 3ny9_A* 3nya_A*
3pds_A*
Length = 500
Score = 85.1 bits (210), Expect = 1e-21
Identities = 23/45 (51%), Positives = 29/45 (64%)
Query: 19 NVFVIAAILLEKNLQSVANYLIVSLAVADLMVACLVMPLGAVYEL 63
NV VI AI + LQ+V NY I SLA ADL++ V+P GA + L
Sbjct: 58 NVLVITAIAKFERLQTVTNYFITSLACADLVMGLAVVPFGAAHIL 102
>3pbl_A D(3) dopamine receptor, lysozyme chimera; structural genomics,
PSI-2, protein structure initiative, AC technologies
center for gene to 3D structure; HET: ETQ MAL; 2.89A
{Homo sapiens}
Length = 481
Score = 84.4 bits (208), Expect = 2e-21
Identities = 25/46 (54%), Positives = 31/46 (67%)
Query: 19 NVFVIAAILLEKNLQSVANYLIVSLAVADLMVACLVMPLGAVYELN 64
N V A+L E+ LQ+ NYL+VSLAVADL+VA LVMP E+
Sbjct: 56 NGLVCMAVLKERALQTTTNYLVVSLAVADLLVATLVMPWVVYLEVT 101
>3rze_A Histamine H1 receptor, lysozyme chimera; structural genomics,
PSI-biology, membrane protein, GPCR NET GPCR,
hydrolase; HET: 5EH D7V OLC; 3.10A {Homo sapiens}
Length = 452
Score = 83.2 bits (205), Expect = 5e-21
Identities = 21/46 (45%), Positives = 31/46 (67%)
Query: 19 NVFVIAAILLEKNLQSVANYLIVSLAVADLMVACLVMPLGAVYELN 64
N+ V+ A+ E+ L +V N IVSL+VADL+V +VMP+ +Y L
Sbjct: 26 NLLVLYAVRSERKLHTVGNLYIVSLSVADLIVGAVVMPMNILYLLM 71
>3uon_A Human M2 muscarinic acetylcholine, receptor T4 LY fusion protein;
G protein-coupled receptor, GPCR, SI protein-antagonist
complex; HET: QNB BGC; 3.00A {Homo sapiens} PDB:
4daj_A*
Length = 467
Score = 82.8 bits (204), Expect = 8e-21
Identities = 17/45 (37%), Positives = 29/45 (64%)
Query: 19 NVFVIAAILLEKNLQSVANYLIVSLAVADLMVACLVMPLGAVYEL 63
N+ V+ +I + ++LQ+V NY + SLA ADL++ M L +Y +
Sbjct: 41 NILVMVSIKVNRHLQTVNNYFLFSLACADLIIGVFSMNLYTLYTV 85
>4eiy_A Adenosine receptor A2A/soluble cytochrome B562 CH; novel protein
engineering, GPCR network, PSI-biology, struct
genomics, membrane protein, GPCR; HET: ZMA CLR OLA OLC
OLB; 1.80A {Homo sapiens} PDB: 3vg9_A* 3vga_A* 2ydv_A*
2ydo_A* 3uza_A* 3rey_A* 3rfm_A* 3pwh_A* 3uzc_A* 4er9_A
Length = 447
Score = 78.9 bits (194), Expect = 2e-19
Identities = 20/46 (43%), Positives = 25/46 (54%)
Query: 19 NVFVIAAILLEKNLQSVANYLIVSLAVADLMVACLVMPLGAVYELN 64
NV V A+ L NLQ+V NY +VSLA AD+ V L +P
Sbjct: 49 NVLVCWAVWLNSNLQNVTNYFVVSLAAADIAVGVLAIPFAITISTG 94
>3sn6_R Lysozyme, beta-2 adrenergic receptor; seven transmembrane receptor,
nanobody, G protein-coupled RE GPCR, signal
transduction, G protein signaling; HET: P0G; 3.20A
{Enterobacteria phage T4} PDB: 3kj6_A 2r4s_A 2r4r_A
Length = 514
Score = 78.4 bits (193), Expect = 3e-19
Identities = 23/45 (51%), Positives = 29/45 (64%)
Query: 19 NVFVIAAILLEKNLQSVANYLIVSLAVADLMVACLVMPLGAVYEL 63
NV VI AI + LQ+V NY I SLA ADL++ V+P GA + L
Sbjct: 200 NVLVITAIAKFERLQTVTNYFITSLACADLVMGLAVVPFGAAHIL 244
>3eml_A Human adenosine A2A receptor/T4 lysozyme chimera; caffeine, GPCR,
membrane protein, LCP, mesophase, structural genomics,
PSI-2; HET: ZMA STE; 2.60A {Homo sapiens} PDB: 3qak_A*
Length = 488
Score = 78.6 bits (193), Expect = 3e-19
Identities = 20/44 (45%), Positives = 25/44 (56%)
Query: 19 NVFVIAAILLEKNLQSVANYLIVSLAVADLMVACLVMPLGAVYE 62
NV V A+ L NLQ+V NY +VSLA AD+ V L +P
Sbjct: 39 NVLVCWAVWLNSNLQNVTNYFVVSLAAADIAVGVLAIPFAITIS 82
>4amj_A Beta-1 adrenergic receptor; membrane protein, 7TMR
BETA1-adrenoceptor, stabilising mutat biased agonist;
HET: CVD 2CV; 2.30A {Meleagris gallopavo} PDB: 2y01_A*
2y02_A* 2y03_A* 2y04_A* 4ami_A* 2y00_A* 2vt4_A* 2ycw_A*
2ycx_A* 2ycy_A* 2ycz_A*
Length = 315
Score = 74.4 bits (183), Expect = 5e-18
Identities = 23/45 (51%), Positives = 29/45 (64%)
Query: 19 NVFVIAAILLEKNLQSVANYLIVSLAVADLMVACLVMPLGAVYEL 63
NV VIAAI + LQ++ N I SLA ADL+V LV+P GA +
Sbjct: 29 NVLVIAAIGSTQRLQTLTNLFITSLACADLVVGLLVVPFGATLVV 73
>3v2y_A Sphingosine 1-phosphate receptor 1, lysozyme CHIM; EDG receptor,
lipid receptor, multiple sclerosi autoimmunity,
structural genomics, PSI-biology; HET: ML5 NAG; 2.80A
{Homo sapiens} PDB: 3v2w_A*
Length = 520
Score = 69.9 bits (170), Expect = 3e-16
Identities = 11/51 (21%), Positives = 19/51 (37%)
Query: 19 NVFVIAAILLEKNLQSVANYLIVSLAVADLMVACLVMPLGAVYELNAKCFS 69
N+FV+ I K Y I +LA++DL+ + +
Sbjct: 81 NIFVLLTIWKTKKFHRPMYYFIGNLALSDLLAGVAYTANLLLSGATTYKLT 131
>2ks9_A Substance-P receptor; water, autodock, NK1, neuropeptide
receptor-NEU complex; NMR {Homo sapiens} PDB: 2ksa_A
2ksb_A
Length = 364
Score = 50.4 bits (121), Expect = 2e-09
Identities = 15/46 (32%), Positives = 26/46 (56%)
Query: 19 NVFVIAAILLEKNLQSVANYLIVSLAVADLMVACLVMPLGAVYELN 64
NV V+ IL K +++V NY +V+LA A+ +A + Y ++
Sbjct: 50 NVVVMWIILAHKRMRTVTNYFLVNLAFAEASMAAFNTVVNFTYAVH 95
>1u19_A Rhodopsin; G protein-coupled receptor, membrane protein, retinal
protei photoreceptor, signaling protein; HET: MAN NAG
BMA RET PLM HTO HTG; 2.20A {Bos taurus} SCOP: f.13.1.2
PDB: 1hzx_A* 1gzm_A* 1l9h_A* 2g87_A* 2hpy_A* 2i35_A*
2i36_A* 2i37_A* 2ped_A* 3oax_A* 3c9l_A* 1jfp_A* 1ln6_A*
1f88_A* 3cap_A* 3dqb_A* 3pqr_A* 3pxo_A* 3c9m_A* 2x72_A*
...
Length = 349
Score = 47.0 bits (112), Expect = 4e-08
Identities = 12/46 (26%), Positives = 22/46 (47%)
Query: 19 NVFVIAAILLEKNLQSVANYLIVSLAVADLMVACLVMPLGAVYELN 64
N + + K L++ NY++++LAVADL + L+
Sbjct: 56 NFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLH 101
>4ea3_A Fusion protein of nociceptin receptor and cytochr; PSI-biology GPCR
network, structural genomics, GPCR membrane 7TM NOP ORL1
cytochrome B562; HET: 0NN OLB OLA OLC; 3.01A {Homo
sapiens}
Length = 434
Score = 43.3 bits (102), Expect = 9e-07
Identities = 13/43 (30%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
Query: 19 NVFVIAAILLEKNLQSVANYLIVSLAVADLMVACLVMPLGAVY 61
N V+ IL +++ N I +LA+AD +V L +P
Sbjct: 143 NCLVMYVILRHTKMKTATNIYIFNLALADTLV-LLTLPFQGTD 184
>2z73_A Rhodopsin; visual pigment, GQ-type, G-protein coupled receptor,
chromophore, glycoprotein, lipoprotein, membrane,
palmitate phosphorylation; HET: BOG RET PLM TWT PC1;
2.50A {Todarodes pacificus} PDB: 3aym_A* 3ayn_A*
2ziy_A*
Length = 448
Score = 41.4 bits (97), Expect = 4e-06
Identities = 12/37 (32%), Positives = 19/37 (51%)
Query: 19 NVFVIAAILLEKNLQSVANYLIVSLAVADLMVACLVM 55
N VI K+LQ+ AN I++LA +D + +
Sbjct: 52 NGIVIYLFTKTKSLQTPANMFIINLAFSDFTFSLVNG 88
>4dkl_A MU-type opioid receptor, lysozyme chimera; G-protein coupled
receptor, 7 transmembrane receptor, signal
protein-antagonist complex; HET: BF0 CLR MPG 1PE; 2.80A
{Mus musculus} PDB: 4ej4_A* 4djh_A*
Length = 464
Score = 40.8 bits (95), Expect = 5e-06
Identities = 11/43 (25%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
Query: 19 NVFVIAAILLEKNLQSVANYLIVSLAVADLMVACLVMPLGAVY 61
N V+ I+ +++ N I +LA+AD + +P +V
Sbjct: 35 NFLVMYVIVRYTKMKTATNIYIFNLALADALA-TSTLPFQSVN 76
>3odu_A C-X-C chemokine receptor type 4, lysozyme chimera; structural
genomics, PSI-2, protein structure initiative; HET: ITD
OLC OLA; 2.50A {Homo sapiens} PDB: 3oe8_A* 3oe6_A*
3oe0_A* 3oe9_A* 2k03_B* 2k04_B 2k05_B*
Length = 502
Score = 40.7 bits (95), Expect = 7e-06
Identities = 14/46 (30%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Query: 19 NVFVIAAILLEKNLQSVANYLIVSLAVADLMVACLVMPLGAVYELN 64
N VI + +K L+S+ + + L+VADL+ + +P AV +
Sbjct: 66 NGLVILVMGYQKKLRSMTDKYRLHLSVADLLF-VITLPFWAVDAVA 110
>4fix_A UDP-galactofuranosyl transferase GLFT2; CAZY GT-2 family,
glycosyltrans carbohydrate binding, membrane; 2.45A
{Mycobacterium tuberculosis} PDB: 4fiy_A*
Length = 657
Score = 26.1 bits (57), Expect = 1.1
Identities = 11/44 (25%), Positives = 19/44 (43%)
Query: 3 SSGPDIPNYKLYFNYRNVFVIAAILLEKNLQSVANYLIVSLAVA 46
S D +++ YF+ RN V+AA+ + V + L
Sbjct: 420 SDKDDAIDWQAYFHLRNRLVVAAMHWDGPKAQVIGLVRSHLKAT 463
>3edf_A FSPCMD, cyclomaltodextrinase; alpha-cyclodextrin complex,
glycosidase, hydrolase; HET: CE6 ACX; 1.65A
{Flavobacterium SP} PDB: 3edj_A* 3edk_A* 3ede_A 3edd_A*
1h3g_A
Length = 601
Score = 25.6 bits (56), Expect = 1.6
Identities = 10/47 (21%), Positives = 17/47 (36%), Gaps = 5/47 (10%)
Query: 5 GPDIPNYKLYFNYRNVFVIAAILLEKNLQSVANYLIVSLAVADLMVA 51
G DI + +Y V +++ + NYL V L +
Sbjct: 29 GRDIGRMEAALDYPGVRLVSPTRVPNA-----NYLFVDLEIGPEAQP 70
>2qik_A UPF0131 protein YKQA; NESG, SR631, structural genomics, PSI-2,
protein structure initiative, northeast structural
genomics consortium; HET: CIT; 1.35A {Bacillus subtilis}
Length = 285
Score = 24.6 bits (53), Expect = 3.5
Identities = 5/24 (20%), Positives = 8/24 (33%)
Query: 8 IPNYKLYFNYRNVFVIAAILLEKN 31
+ Y F + A +LE
Sbjct: 160 LKGYTTRFTLKREDGSRADMLEDG 183
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.324 0.137 0.392
Gapped
Lambda K H
0.267 0.0548 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,016,660
Number of extensions: 45060
Number of successful extensions: 107
Number of sequences better than 10.0: 1
Number of HSP's gapped: 107
Number of HSP's successfully gapped: 18
Length of query: 71
Length of database: 6,701,793
Length adjustment: 41
Effective length of query: 30
Effective length of database: 5,557,032
Effective search space: 166710960
Effective search space used: 166710960
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 51 (23.8 bits)