RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy4355
         (71 letters)



>d1u19a_ f.13.1.2 (A:) Rhodopsin {Cow (Bos taurus) [TaxId: 9913]}
          Length = 348

 Score = 46.9 bits (110), Expect = 1e-08
 Identities = 11/39 (28%), Positives = 20/39 (51%)

Query: 19 NVFVIAAILLEKNLQSVANYLIVSLAVADLMVACLVMPL 57
          N   +   +  K L++  NY++++LAVADL +       
Sbjct: 55 NFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTT 93


>d1urja_ e.58.1.1 (A:) Infected cell protein 8, ICP8 {Herpes simplex
           virus 1 [TaxId: 10298]}
          Length = 1122

 Score = 24.8 bits (54), Expect = 1.2
 Identities = 7/43 (16%), Positives = 13/43 (30%)

Query: 28  LEKNLQSVANYLIVSLAVADLMVACLVMPLGAVYELNAKCFSE 70
             K         + S+   D  +A   +   AV++      S 
Sbjct: 294 GGKGAAGGFEQRLASVMAGDAALALESIVSMAVFDEPPTDISA 336


>d2sqca1 a.102.4.2 (A:8-36,A:308-630) Squalene-hopene cyclase
           {Alicyclobacillus acidocaldarius [TaxId: 405212]}
          Length = 352

 Score = 24.3 bits (52), Expect = 1.5
 Identities = 9/27 (33%), Positives = 12/27 (44%), Gaps = 2/27 (7%)

Query: 2   ESSGPDIPN--YKLYFNYRNVFVIAAI 26
             +G   P   Y  Y  YR+VF   A+
Sbjct: 317 YYTGTGFPGDFYLGYTMYRHVFPTLAL 343


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.324    0.137    0.392 

Gapped
Lambda     K      H
   0.267   0.0503    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 236,574
Number of extensions: 7595
Number of successful extensions: 17
Number of sequences better than 10.0: 1
Number of HSP's gapped: 17
Number of HSP's successfully gapped: 4
Length of query: 71
Length of database: 2,407,596
Length adjustment: 39
Effective length of query: 32
Effective length of database: 1,872,126
Effective search space: 59908032
Effective search space used: 59908032
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 47 (22.4 bits)