BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy4359
         (220 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3UNV|A Chain A, Pantoea Agglomerans Phenylalanine Aminomutase
 pdb|3UNV|B Chain B, Pantoea Agglomerans Phenylalanine Aminomutase
          Length = 547

 Score = 31.6 bits (70), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 21/62 (33%), Positives = 28/62 (45%)

Query: 45  LNPLLSICNAELMAILYAVYFILANCLSEARNSSFLLCTDSLSALQSLQDIFSPNLHTLR 104
           L P L   NA L   L    F+ A+  +E+R S   +   SLS     QDI S  L   R
Sbjct: 406 LPPFLCAENAGLRLGLMGGQFMTASITAESRASCMPMSIQSLSTTGDFQDIVSFGLVAAR 465

Query: 105 QI 106
           ++
Sbjct: 466 RV 467


>pdb|2LP4|A Chain A, Solution Structure Of P1-CheyP2 COMPLEX IN BACTERIAL
           CHEMOTAXIS
          Length = 225

 Score = 29.6 bits (65), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 31/120 (25%), Positives = 43/120 (35%), Gaps = 18/120 (15%)

Query: 59  ILYAVYFILANCLSEARNSSFLLCTDSLSALQSLQDIFSPNLHTLRQIMSLWHEDWNYLI 118
           IL     ++ N L EAR     L TD ++     +DI    L   +         + Y I
Sbjct: 61  ILQETTHLMENLLDEARRGEMQLNTDIINLFLETKDIMQEQLDAYKNSEEPDAASFEY-I 119

Query: 119 GNKLRLIKEENKPWHP-------------PQTFSRRDQ----VTLTRLRIGHTNLTHVHL 161
            N LR +  E K   P             PQ    R Q    + L+RL+ G  +L    L
Sbjct: 120 CNALRQLALEAKGETPSAVTRLSVVAKSEPQDEQSRSQSPRRIILSRLKAGEVDLLEEEL 179


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.321    0.134    0.414 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,274,443
Number of Sequences: 62578
Number of extensions: 233567
Number of successful extensions: 408
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 407
Number of HSP's gapped (non-prelim): 4
length of query: 220
length of database: 14,973,337
effective HSP length: 95
effective length of query: 125
effective length of database: 9,028,427
effective search space: 1128553375
effective search space used: 1128553375
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 49 (23.5 bits)