BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy4359
(220 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q52KB5|ZBT24_DANRE Zinc finger and BTB domain-containing protein 24 OS=Danio rerio
GN=zbtb24 PE=2 SV=1
Length = 672
Score = 36.2 bits (82), Expect = 0.18, Method: Composition-based stats.
Identities = 18/49 (36%), Positives = 26/49 (53%), Gaps = 3/49 (6%)
Query: 153 HTNLTHVHLMKKEQPPECEICSCNLTVKHLLKYCLKYQNIRDPNDLYAC 201
HT L H + E+P C +CS L+ KH L L++ N+ N L+ C
Sbjct: 278 HTLLVHQRMHTGEKPYICTVCSKALSTKHSL---LEHMNLHTENKLFTC 323
>sp|Q03277|PO11_SCICO Retrovirus-related Pol polyprotein from type-1 retrotransposable
element R1 (Fragment) OS=Sciara coprophila PE=4 SV=1
Length = 1004
Score = 34.3 bits (77), Expect = 0.61, Method: Composition-based stats.
Identities = 26/100 (26%), Positives = 45/100 (45%), Gaps = 12/100 (12%)
Query: 103 LRQIMSLWHEDWNYLIGNKLRLIKEENKPWHPPQTFSRRDQ-----VTLTRLRIGHTNLT 157
+ +++ +W W+ + K RL E + P F R ++ + L + GH ++
Sbjct: 863 MERLLDVWQGRWD--VSEKGRLTHE----FIPSVRFVRENEWMAFGLCLGYVLTGHGSMN 916
Query: 158 -HVHLMKKEQPPECEICSCNLTVKHLLKYCLKYQNIRDPN 196
+H P C + N VKHLL C Y+++RD N
Sbjct: 917 GFLHKRGLSNTPVCMCGAPNEDVKHLLGECPLYEDLRDLN 956
>sp|Q00472|PNPP_SCHPO 4-nitrophenylphosphatase OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=pho2 PE=4 SV=2
Length = 298
Score = 32.0 bits (71), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 19/73 (26%), Positives = 33/73 (45%), Gaps = 12/73 (16%)
Query: 146 LTRLRIGHTNLTHVHLMKKEQPPECE-----------ICSCNLTVKHLLKYCLKYQNIRD 194
L R+ + H T L + + E +C ++ V +L KYC+ +Q ++D
Sbjct: 118 LDRVGVAHIGGTDPSLRRALASEDVEKIGPDPSVGAVLCGMDMHVTYL-KYCMAFQYLQD 176
Query: 195 PNDLYACLNDDTT 207
PN + N D+T
Sbjct: 177 PNCAFLLTNQDST 189
>sp|O14345|PFA3_SCHPO Palmitoyltransferase pfa3 OS=Schizosaccharomyces pombe (strain 972
/ ATCC 24843) GN=pfa3 PE=3 SV=1
Length = 329
Score = 31.6 bits (70), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 24/111 (21%), Positives = 49/111 (44%), Gaps = 22/111 (19%)
Query: 9 IVSKYPQSTKIYTDASKNDSSVSAAFWSPDFSFKVKLNPLLSICNAELMAILYAVYFILA 68
+ S + TK +T N S++ FW F+F V ++ +++ + Y
Sbjct: 157 LYSTFVAITKTFTAEGANISAIYLVFWGFLFAFAVGMSIVMTA---------FTFY---- 203
Query: 69 NCLSEARNSSFLLCTDSLSALQSLQDIFSPNLHTLRQIMSLWHEDWNYLIG 119
++S L+ +LS L+S+ +S H+ + W+E+W ++G
Sbjct: 204 -------HTSLLI--HNLSTLESMSSSWSRYTHSTQPFNVGWYENWCQIMG 245
>sp|Q67724|RDRP_HASV Methyltransferase/helicase/RNA-directed RNA polymerase OS=Helicoverpa
armigera stunt virus PE=2 SV=1
Length = 1704
Score = 31.6 bits (70), Expect = 4.9, Method: Composition-based stats.
Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 5/51 (9%)
Query: 9 IVSKYPQSTKIYTDASKNDS-----SVSAAFWSPDFSFKVKLNPLLSICNA 54
I +YPQ TK+ +DASK S S S +F +P ++ + + +C A
Sbjct: 1613 ISGRYPQKTKLSSDASKGYSRTKGCSQSTSFPAPSADYQARDCQTVRVCRA 1663
>sp|O67109|Y983_AQUAE Uncharacterized protein aq_983 OS=Aquifex aeolicus (strain VF5)
GN=aq_983 PE=4 SV=1
Length = 292
Score = 31.2 bits (69), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 28/50 (56%), Gaps = 2/50 (4%)
Query: 155 NLTHVHLMKKEQPPECE--ICSCNLTVKHLLKYCLKYQNIRDPNDLYACL 202
NL H L+K+E P+ E + L + L KY KY+ + +D+YAC+
Sbjct: 187 NLNHTILIKEEDIPQKEPSTKAQELYFEILKKYLRKYRKEKSLHDVYACI 236
>sp|Q9P225|DYH2_HUMAN Dynein heavy chain 2, axonemal OS=Homo sapiens GN=DNAH2 PE=2 SV=3
Length = 4427
Score = 31.2 bits (69), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 8/35 (22%)
Query: 89 LQSLQDIFSPNLHTLRQIM--------SLWHEDWN 115
L ++DIF NLHTLR + + WHED+N
Sbjct: 424 LLEIEDIFHKNLHTLRAVRGGILDVKNTCWHEDYN 458
>sp|P47485|Y243_MYCGE Uncharacterized protein MG243 OS=Mycoplasma genitalium (strain
ATCC 33530 / G-37 / NCTC 10195) GN=MG243 PE=4 SV=2
Length = 226
Score = 30.8 bits (68), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 31/57 (54%)
Query: 42 KVKLNPLLSICNAELMAILYAVYFILANCLSEARNSSFLLCTDSLSALQSLQDIFSP 98
KVK L +C+ L+AI+ V F++ S+ R FL+ + S + L ++ IF P
Sbjct: 20 KVKHRALAWLCDVFLLAIVLVVIFLITQAFSDNRFLLFLVLSCSQTILWTVYFIFLP 76
>sp|P10716|CLC4F_RAT C-type lectin domain family 4 member F OS=Rattus norvegicus
GN=Clec4f PE=1 SV=1
Length = 550
Score = 30.4 bits (67), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 22/53 (41%), Gaps = 1/53 (1%)
Query: 86 LSALQSLQDIFSPNLHTLRQIMSLWHEDWNYLIGNKLRLIKEENKPWHPPQTF 138
L ALQ + T Q++ L +DW Y G K + K WH + F
Sbjct: 388 LEALQKAVAAHTQGQKTQNQVLQLIMQDWKYFNG-KFYYFSRDKKSWHEAENF 439
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.134 0.414
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 78,310,142
Number of Sequences: 539616
Number of extensions: 2985863
Number of successful extensions: 6829
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 6819
Number of HSP's gapped (non-prelim): 24
length of query: 220
length of database: 191,569,459
effective HSP length: 113
effective length of query: 107
effective length of database: 130,592,851
effective search space: 13973435057
effective search space used: 13973435057
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 59 (27.3 bits)