Query psy4359
Match_columns 220
No_of_seqs 150 out of 389
Neff 7.0
Searched_HMMs 29240
Date Fri Aug 16 23:31:30 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4359.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/4359hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2qkb_A Ribonuclease H1, HS-RNA 99.4 1.9E-13 6.3E-18 108.3 7.9 87 15-117 6-101 (154)
2 3h08_A RNH (ribonuclease H); R 99.3 1.4E-12 4.9E-17 102.1 4.7 85 15-117 3-94 (146)
3 3u3g_D Ribonuclease H, RNAse H 99.3 2E-12 6.9E-17 99.3 5.5 84 15-103 2-96 (140)
4 3hst_B Protein RV2228C/MT2287; 99.3 3.2E-12 1.1E-16 98.7 6.4 83 16-103 3-93 (141)
5 2kq2_A Ribonuclease H-related 99.3 7.1E-12 2.4E-16 98.7 8.2 77 14-96 4-89 (147)
6 1jl1_A Ribonuclease HI; RNAse 99.2 4.4E-12 1.5E-16 100.6 5.0 86 15-118 3-94 (155)
7 2e4l_A Ribonuclease HI, RNAse 99.2 6.5E-12 2.2E-16 100.0 5.0 85 15-117 5-95 (158)
8 1ril_A Ribonuclease H; hydrola 99.2 7E-12 2.4E-16 100.7 4.6 85 15-117 7-98 (166)
9 3qio_A GAG-POL polyprotein; RN 99.2 2.2E-11 7.7E-16 96.3 6.9 85 12-117 8-96 (150)
10 2lsn_A Reverse transcriptase; 99.2 2.4E-11 8.3E-16 97.8 6.0 87 15-118 6-107 (165)
11 3p1g_A Xenotropic murine leuke 99.1 4.8E-11 1.6E-15 96.0 5.7 69 16-92 23-96 (165)
12 2ehg_A Ribonuclease HI; RNAse 99.1 1.1E-10 3.6E-15 91.5 6.6 76 17-97 2-89 (149)
13 4htu_A Ribonuclease H, RNAse H 99.1 1.5E-10 5.1E-15 90.1 5.8 76 14-95 3-83 (134)
14 1zbf_A Ribonuclease H-related 99.0 2.9E-10 1E-14 89.3 5.7 77 14-96 9-90 (142)
15 2zd1_A Reverse transcriptase/r 98.8 5.6E-09 1.9E-13 98.1 5.6 81 13-103 436-519 (557)
16 1mu2_A HIV-2 RT; HIV-2 reverse 98.7 9E-09 3.1E-13 96.7 5.8 73 13-96 433-509 (555)
17 1rw3_A POL polyprotein; RNA an 93.5 0.046 1.6E-06 49.5 3.5 75 14-95 344-428 (455)
18 2zd1_B P51 RT; P51/P66, hetero 90.3 0.26 8.9E-06 44.4 4.6 72 14-87 322-398 (428)
19 2fr5_A Cytidine deaminase; tet 62.2 6.4 0.00022 30.2 3.5 54 27-86 35-92 (146)
20 2zd1_A Reverse transcriptase/r 57.3 9 0.00031 35.3 4.1 70 15-87 325-400 (557)
21 3dmo_A Cytidine deaminase; str 53.5 10 0.00035 28.9 3.2 54 29-86 33-90 (138)
22 1di2_A XLRBPA, double stranded 51.9 21 0.00073 23.1 4.3 64 1-67 1-68 (69)
23 3adj_A F21M12.9 protein; HYL1, 50.5 41 0.0014 22.2 5.7 65 2-68 6-74 (76)
24 3r2n_A Cytidine deaminase; str 49.3 13 0.00045 28.2 3.2 51 29-85 32-86 (138)
25 3mpz_A Cytidine deaminase; ssg 46.7 15 0.00051 28.3 3.2 51 29-85 47-101 (150)
26 2nx8_A TRNA-specific adenosine 46.4 23 0.00079 27.8 4.4 52 27-83 35-90 (179)
27 2a8n_A Cytidine and deoxycytid 45.9 23 0.00077 26.6 4.1 52 27-83 23-78 (144)
28 1wkq_A Guanine deaminase; doma 44.7 26 0.0009 27.1 4.4 52 27-83 31-86 (164)
29 1wwr_A TRNA adenosine deaminas 44.1 26 0.00089 27.3 4.4 52 27-83 42-97 (171)
30 2d30_A Cytidine deaminase; pur 42.5 14 0.00049 28.1 2.5 52 29-86 34-89 (141)
31 2b3j_A TRNA adenosine deaminas 38.0 36 0.0012 26.0 4.2 52 27-83 26-81 (159)
32 1uwz_A Cytidine deaminase; CDD 36.8 35 0.0012 25.5 3.9 52 29-86 25-80 (136)
33 3adl_A RISC-loading complex su 35.6 85 0.0029 21.5 5.5 65 2-69 17-85 (88)
34 2z3g_A Blasticidin-S deaminase 33.8 35 0.0012 25.3 3.4 53 28-86 27-81 (130)
35 1z3a_A TRNA-specific adenosine 33.4 40 0.0014 26.1 3.9 52 27-83 28-83 (168)
36 1uhz_A Staufen (RNA binding pr 33.2 98 0.0034 21.1 5.5 64 2-68 8-75 (89)
37 3oj6_A Blasticidin-S deaminase 31.8 38 0.0013 26.2 3.4 36 29-64 52-89 (158)
38 3dh1_A TRNA-specific adenosine 31.1 75 0.0026 25.1 5.2 42 27-68 45-90 (189)
39 3b8f_A Putative blasticidin S 30.7 32 0.0011 26.0 2.7 56 20-85 19-78 (142)
40 2cpn_A TAR RNA-binding protein 28.7 93 0.0032 21.3 4.8 64 2-68 18-85 (89)
41 1ekz_A DSRBDIII, maternal effe 26.2 1E+02 0.0035 20.1 4.5 62 2-67 9-74 (76)
42 1x48_A Interferon-induced, dou 25.3 1.6E+02 0.0055 19.9 6.4 65 2-69 8-75 (88)
43 2khx_A Ribonuclease 3; drosha, 24.8 1.1E+02 0.0039 20.6 4.6 64 2-67 3-75 (85)
44 1l8d_A DNA double-strand break 24.0 20 0.00068 25.5 0.5 15 167-181 47-61 (112)
45 1r5t_A Cytidine deaminase; zin 23.9 74 0.0025 23.9 3.8 54 27-86 31-89 (142)
46 2dix_A Interferon-inducible do 23.3 1.7E+02 0.0059 19.5 6.0 64 2-69 10-77 (84)
47 2f6m_B Vacuolar protein sortin 23.2 51 0.0018 24.0 2.6 18 52-69 30-47 (109)
48 1p6o_A Cytosine deaminase; hyd 23.1 82 0.0028 24.0 3.9 39 27-65 33-77 (161)
49 2p22_B Vacuolar protein sortin 22.9 52 0.0018 24.3 2.6 18 52-69 39-56 (118)
50 3adg_A F21M12.9 protein; HYL1, 21.6 1.7E+02 0.0057 18.8 6.1 63 2-66 5-71 (73)
51 1x47_A DGCR8 protein; structur 21.2 1.9E+02 0.0065 20.0 5.3 65 2-68 18-84 (98)
52 2qgp_A HNH endonuclease; Q39X4 21.2 7.8 0.00027 28.1 -2.3 19 165-183 33-56 (112)
53 3j20_M 30S ribosomal protein S 20.4 1.6E+02 0.0056 22.1 5.0 75 9-95 19-108 (137)
54 2caz_B Vacuolar protein sortin 20.2 61 0.0021 25.1 2.6 18 52-69 47-64 (155)
No 1
>2qkb_A Ribonuclease H1, HS-RNAse HC, RNAse H1; RNA/DNA hybrid; 2.40A {Homo sapiens} PDB: 2qk9_A 2qkk_A*
Probab=99.44 E-value=1.9e-13 Score=108.29 Aligned_cols=87 Identities=15% Similarity=0.227 Sum_probs=68.7
Q ss_pred CceeeeecCCCCCCc-----ceeeeeCCC--c-ceeeecchhhhhhhHHHHHHHHHHHHHHHhhhhhhccCceEEeccch
Q psy4359 15 QSTKIYTDASKNDSS-----VSAAFWSPD--F-SFKVKLNPLLSICNAELMAILYAVYFILANCLSEARNSSFLLCTDSL 86 (220)
Q Consensus 15 ~~~~IyTDgSk~~~~-----~G~ai~~~~--~-~~~~~l~~~~si~~AEl~AI~~AL~~~~~~~~~~~~~~~~~I~sDS~ 86 (220)
+.+.||||||...++ .|+|++..+ . .....++..+|++.||+.|++.||+.+.+. ...++.|+|||+
T Consensus 6 ~~~~iytDGs~~~n~~~~~~aG~Gvv~~~~~~~~~~~~l~~~~tn~~aEl~A~~~aL~~~~~~-----~~~~v~i~tDS~ 80 (154)
T 2qkb_A 6 DFVVVYTDGCCSSNGRRRPRAGIGVYWGPGHPLNVGIRLPGRQTNQRAEIHAACKAIEQAKTQ-----NINKLVLYTNSM 80 (154)
T ss_dssp TEEEEEEEEEEETTTSSSCEEEEEEECSTTCTTCEEEECCSSCCHHHHHHHHHHHHHHHHHHT-----TCCEEEEEESCH
T ss_pred CeEEEEEccCcCCCCCCCCcEEEEEEEECCCceeEEeecCCCCchHHHHHHHHHHHHHHHHhC-----CCceEEEEECcH
Confidence 568999999987432 688876332 2 234556667899999999999999999875 568999999999
Q ss_pred HHHHhhhhhhCCChHhHHHHHHhhh-hccchh
Q psy4359 87 SALQSLQDIFSPNLHTLRQIMSLWH-EDWNYL 117 (220)
Q Consensus 87 sal~ai~~~~~P~~~Di~~I~~~Wq-~~W~~~ 117 (220)
+++++|..+ ...|+ +.|...
T Consensus 81 ~vi~~i~~~-----------~~~w~~~~w~~~ 101 (154)
T 2qkb_A 81 FTINGITNW-----------VQGWKKNGWKTS 101 (154)
T ss_dssp HHHHHHHTH-----------HHHHHTTTSBCT
T ss_pred HHHhhhhhh-----------HHHHHhcccccc
Confidence 999999988 77885 478753
No 2
>3h08_A RNH (ribonuclease H); RNAse H, 3D-structure, endonuclease, hydrolase, magnesium, metal-binding; 1.60A {Chlorobaculum tepidum}
Probab=99.30 E-value=1.4e-12 Score=102.11 Aligned_cols=85 Identities=16% Similarity=0.230 Sum_probs=62.9
Q ss_pred CceeeeecCCCCCC--cceeeee--CCCcce-eeecchhhhhhhHHHHHHHHHHHHHHHhhhhhhccCceEEeccchHHH
Q psy4359 15 QSTKIYTDASKNDS--SVSAAFW--SPDFSF-KVKLNPLLSICNAELMAILYAVYFILANCLSEARNSSFLLCTDSLSAL 89 (220)
Q Consensus 15 ~~~~IyTDgSk~~~--~~G~ai~--~~~~~~-~~~l~~~~si~~AEl~AI~~AL~~~~~~~~~~~~~~~~~I~sDS~sal 89 (220)
+.+.||||||...+ ..|+|++ .++... ..+..+.+|++.||+.|++.||+.+.+ ..++.|+|||++++
T Consensus 3 ~~i~iytDGs~~~n~g~~g~G~v~~~~~~~~~~~~~~~~~Tnn~aEl~A~~~AL~~~~~-------~~~v~I~tDS~~vi 75 (146)
T 3h08_A 3 KTITIYTDGAASGNPGKGGWGALLMYGSSRKEISGYDPATTNNRMELMAAIKGLEALKE-------PARVQLYSDSAYLV 75 (146)
T ss_dssp CEEEEEEEEEESSTTEEEEEEEEEEETTEEEEEEEEEEEECHHHHHHHHHHHHHHTCSS-------CCEEEEEESCHHHH
T ss_pred ceEEEEEecCCCCCCCceEEEEEEEECCeeEEeecCCCCCcHHHHHHHHHHHHHHhcCc-------cCcEEEEeChHHHH
Confidence 57899999998753 3777755 333222 233335788999999999999999753 57899999999999
Q ss_pred Hhhhh-hhCCChHhHHHHHHhhh-hccchh
Q psy4359 90 QSLQD-IFSPNLHTLRQIMSLWH-EDWNYL 117 (220)
Q Consensus 90 ~ai~~-~~~P~~~Di~~I~~~Wq-~~W~~~ 117 (220)
++|.. + ...|+ +.|..+
T Consensus 76 ~~i~~~w-----------~~~W~~~~w~~~ 94 (146)
T 3h08_A 76 NAMNEGW-----------LKRWVKNGWKTA 94 (146)
T ss_dssp HHHHSSH-----------HHHHHHTTCC--
T ss_pred HHHHHHH-----------HHHHHHCCCccC
Confidence 99998 6 66774 467653
No 3
>3u3g_D Ribonuclease H, RNAse H1; hydrolase, cleave the RNA strand of RNA/DNA hybrid; 1.40A {Uncultured organism}
Probab=99.30 E-value=2e-12 Score=99.33 Aligned_cols=84 Identities=15% Similarity=0.071 Sum_probs=62.6
Q ss_pred CceeeeecCCCCCC--cceeeee--CCCc-c--eeeecchhhhhhhHHHHHHHHHHHHHHHhhhhhhccC----ceEEec
Q psy4359 15 QSTKIYTDASKNDS--SVSAAFW--SPDF-S--FKVKLNPLLSICNAELMAILYAVYFILANCLSEARNS----SFLLCT 83 (220)
Q Consensus 15 ~~~~IyTDgSk~~~--~~G~ai~--~~~~-~--~~~~l~~~~si~~AEl~AI~~AL~~~~~~~~~~~~~~----~~~I~s 83 (220)
+.+.||||||...+ ..|+|++ .++. . ...+..+.+|++.||+.|++.||+++.+. ... ++.|+|
T Consensus 2 ~~~~iy~DGs~~~n~g~~G~G~v~~~~~g~~~~~~~~~~~~~tn~~aEl~A~~~aL~~a~~~-----~~~~~~~~v~i~t 76 (140)
T 3u3g_D 2 NKIIIYTDGGARGNPGPAGIGVVITDEKGNTLHESSAYIGETTNNVAEYEALIRALEDLQMF-----GDKLVDMEVEVRM 76 (140)
T ss_dssp CEEEEEEEEEESSTTEEEEEEEEEECTTSCEEEEEEEEEEEECHHHHHHHHHHHHHHHHGGG-----GGGGTTCEEEEEE
T ss_pred ceEEEEEecCCCCCCCCcEEEEEEEeCCCCEEEEEEeeCCCCchHHHHHHHHHHHHHHHHHc-----CCCCCCceEEEEe
Confidence 46899999998753 4777755 3222 1 22333345799999999999999999875 345 999999
Q ss_pred cchHHHHhhhhhhCCChHhH
Q psy4359 84 DSLSALQSLQDIFSPNLHTL 103 (220)
Q Consensus 84 DS~sal~ai~~~~~P~~~Di 103 (220)
||+++++.+++.+...+.++
T Consensus 77 DS~~vi~~i~~~~~~~~~~l 96 (140)
T 3u3g_D 77 DSELIVRQMQGVYKVKEPTL 96 (140)
T ss_dssp SCHHHHHHHTTSSCCCCGGG
T ss_pred ChHHHHHHhCCCcccCCHHH
Confidence 99999999998775554444
No 4
>3hst_B Protein RV2228C/MT2287; ribonuclease H1, RV2228C N-terminal domain, fusion protein, maltose binding protein, HYDR; HET: MLR TAR; 2.25A {Mycobacterium tuberculosis}
Probab=99.30 E-value=3.2e-12 Score=98.71 Aligned_cols=83 Identities=10% Similarity=-0.018 Sum_probs=63.9
Q ss_pred ceeeeecCCCCCC--cceeeee--CCC--cc--eeeecchhhhhhhHHHHHHHHHHHHHHHhhhhhhccCceEEeccchH
Q psy4359 16 STKIYTDASKNDS--SVSAAFW--SPD--FS--FKVKLNPLLSICNAELMAILYAVYFILANCLSEARNSSFLLCTDSLS 87 (220)
Q Consensus 16 ~~~IyTDgSk~~~--~~G~ai~--~~~--~~--~~~~l~~~~si~~AEl~AI~~AL~~~~~~~~~~~~~~~~~I~sDS~s 87 (220)
.+.||||||...+ ..|+|++ .++ .. ...+..+.+|++.||+.|++.||+++.+. ...++.|+|||+.
T Consensus 3 ~~~iy~DGs~~~~~g~~g~G~v~~~~~~~~~~~~~~~~~~~~tn~~aEl~A~~~aL~~a~~~-----~~~~v~i~tDS~~ 77 (141)
T 3hst_B 3 KVVIEADGGSRGNPGPAGYGAVVWTADHSTVLAESKQAIGRATNNVAEYRGLIAGLDDAVKL-----GATEAAVLMDSKL 77 (141)
T ss_dssp EEEEEEEEEESSSSEEEEEEEEEEETTSCSEEEEEEEEEEEECHHHHHHHHHHHHHHHHHHH-----TCSEEEEEESCHH
T ss_pred EEEEEEecCCCCCCCCcEEEEEEEeCCCCcEEEeeeccCCCCchHHHHHHHHHHHHHHHHHC-----CCceEEEEeChHH
Confidence 5789999998743 4677754 332 11 22333347899999999999999999886 5789999999999
Q ss_pred HHHhhhhhhCCChHhH
Q psy4359 88 ALQSLQDIFSPNLHTL 103 (220)
Q Consensus 88 al~ai~~~~~P~~~Di 103 (220)
+++.++..|.+.+.++
T Consensus 78 vv~~i~~~~~~~~~~l 93 (141)
T 3hst_B 78 VVEQMSGRWKVKHPDL 93 (141)
T ss_dssp HHHHHTTSSCCCSHHH
T ss_pred HHHHHhCCcccCCHHH
Confidence 9999998776666666
No 5
>2kq2_A Ribonuclease H-related protein; PSI, NESG, protein structure, APO enzyme, structural genomics, protein structure initiative; NMR {Desulfitobacterium hafniense dcb-2} PDB: 2kw4_A
Probab=99.29 E-value=7.1e-12 Score=98.70 Aligned_cols=77 Identities=16% Similarity=0.042 Sum_probs=56.4
Q ss_pred CCceeeeecCCCCCCcceeeee--CCCcce--ee-ec--ch--hhhhhhHHHHHHHHHHHHHHHhhhhhhccCceEEecc
Q psy4359 14 PQSTKIYTDASKNDSSVSAAFW--SPDFSF--KV-KL--NP--LLSICNAELMAILYAVYFILANCLSEARNSSFLLCTD 84 (220)
Q Consensus 14 ~~~~~IyTDgSk~~~~~G~ai~--~~~~~~--~~-~l--~~--~~si~~AEl~AI~~AL~~~~~~~~~~~~~~~~~I~sD 84 (220)
++.+.||||||+..+..|+|++ ..+... .. +. +. ..|++.||+.|++.||+++.+. +. ++.|+||
T Consensus 4 ~~~i~iytDGs~~~g~~G~G~vi~~~g~~~~~~~~~~~~~~~~~~tNn~aEl~A~~~AL~~a~~~-----~~-~v~I~tD 77 (147)
T 2kq2_A 4 RTEYDVYTDGSYVNGQYAWAYAFVKDGKVHYEDADVGKNPAAATMRNVAGEIAAALYAVKKASQL-----GV-KIRILHD 77 (147)
T ss_dssp TSCCEEECCCCCBTTBCEEEEEEEETTEEEEEEEEECCCGGGGGTCTTHHHHHHHHHHHHHHHHH-----TC-CCCBSSC
T ss_pred CCeEEEEECCCCCCCCcEEEEEEEECCEEEEEEeccccccccccccHHHHHHHHHHHHHHHHHHC-----CC-eEEEEEC
Confidence 3568999999999877888855 333222 22 22 32 3689999999999999998776 34 9999999
Q ss_pred chHHHHhhhhhh
Q psy4359 85 SLSALQSLQDIF 96 (220)
Q Consensus 85 S~sal~ai~~~~ 96 (220)
|+.+.+-+.+.|
T Consensus 78 S~~i~~w~~~~w 89 (147)
T 2kq2_A 78 YAGIAFWATGEW 89 (147)
T ss_dssp CSTHHHHTTSSS
T ss_pred cHHHHHHHhCCC
Confidence 987766555443
No 6
>1jl1_A Ribonuclease HI; RNAse HI, protein stability, thermostability, hydrogen exchange, cooperativity, hydrolase; 1.30A {Escherichia coli} SCOP: c.55.3.1 PDB: 1f21_A 1jxb_A 1g15_A 1rch_A 1rdd_A 1rnh_A* 2rn2_A 1rda_A 1law_A 1rdb_A 1lav_A 3aa4_A 1rbu_A 1gob_A 1rdc_A 1kvc_A 3aa3_A 3aa2_A 3aa5_X 1rbv_A ...
Probab=99.25 E-value=4.4e-12 Score=100.60 Aligned_cols=86 Identities=17% Similarity=0.144 Sum_probs=63.8
Q ss_pred CceeeeecCCCCCC--cceeeee--CCCcce-eeecchhhhhhhHHHHHHHHHHHHHHHhhhhhhccCceEEeccchHHH
Q psy4359 15 QSTKIYTDASKNDS--SVSAAFW--SPDFSF-KVKLNPLLSICNAELMAILYAVYFILANCLSEARNSSFLLCTDSLSAL 89 (220)
Q Consensus 15 ~~~~IyTDgSk~~~--~~G~ai~--~~~~~~-~~~l~~~~si~~AEl~AI~~AL~~~~~~~~~~~~~~~~~I~sDS~sal 89 (220)
..+.||||||...+ ..|+|++ .++... ..+..+.+|++.||+.|++.||+.+.+ ..++.|+|||++++
T Consensus 3 ~~~~iytDGs~~~n~~~~G~G~v~~~~~~~~~~~~~~~~~tn~~aEl~A~~~aL~~~~~-------~~~v~I~tDS~~vi 75 (155)
T 1jl1_A 3 KQVEIFTAGSALGNPGPGGYGAILRYRGREKTFSAGYTRTTNNRMELMAAIVALEALKE-------HAEVILSTDSQYVR 75 (155)
T ss_dssp CCEEEEEEEEESSTTEEEEEEEEEEETTEEEEEEEEEEEECHHHHHHHHHHHHHHTCCS-------CCEEEEEECCHHHH
T ss_pred ceEEEEEccccCCCCCceEEEEEEEECCeEEEEecCCCCCcHHHHHHHHHHHHHHHhCc-------CCcEEEEeCHHHHH
Confidence 46889999999753 3677755 333221 222225678999999999999998753 37899999999999
Q ss_pred HhhhhhhCCChHhHHHHHHhhhh-ccchhh
Q psy4359 90 QSLQDIFSPNLHTLRQIMSLWHE-DWNYLI 118 (220)
Q Consensus 90 ~ai~~~~~P~~~Di~~I~~~Wq~-~W~~~~ 118 (220)
++|..+ ...|+. .|..+.
T Consensus 76 ~~i~~w-----------~~~W~~n~~~~~~ 94 (155)
T 1jl1_A 76 QGITQW-----------IHNWKKRGWKTAD 94 (155)
T ss_dssp HHHHTT-----------HHHHHHTTTBCTT
T ss_pred HHHHHH-----------HHHHhhccccccc
Confidence 999997 667854 787643
No 7
>2e4l_A Ribonuclease HI, RNAse HI; hydrolase, endoribonuclease; 2.00A {Shewanella oneidensis} PDB: 2zqb_A
Probab=99.23 E-value=6.5e-12 Score=100.01 Aligned_cols=85 Identities=18% Similarity=0.156 Sum_probs=62.8
Q ss_pred CceeeeecCCCCCC--cceeeee--CCCcce-eeecchhhhhhhHHHHHHHHHHHHHHHhhhhhhccCceEEeccchHHH
Q psy4359 15 QSTKIYTDASKNDS--SVSAAFW--SPDFSF-KVKLNPLLSICNAELMAILYAVYFILANCLSEARNSSFLLCTDSLSAL 89 (220)
Q Consensus 15 ~~~~IyTDgSk~~~--~~G~ai~--~~~~~~-~~~l~~~~si~~AEl~AI~~AL~~~~~~~~~~~~~~~~~I~sDS~sal 89 (220)
..+.||||||...+ ..|+|++ .++... ..+..+.+|++.||+.|++.||+.+.+ ..++.|+|||++++
T Consensus 5 ~~i~iytDGs~~~n~g~~G~G~v~~~~~~~~~~~~~~~~~tn~~aEl~A~~~AL~~~~~-------~~~v~I~tDS~~vi 77 (158)
T 2e4l_A 5 KLIHIFTDGSCLGNPGPGGYGIVMNYKGHTKEMSDGFSLTTNNRMELLAPIVALEALKE-------PCKIILTSDSQYMR 77 (158)
T ss_dssp CEEEEEEEEEESSSSEEEEEEEEEEETTEEEEEEEEEEEECHHHHHHHHHHHHHHTCSS-------CCEEEEEECCHHHH
T ss_pred CeEEEEEcccccCCCCcEEEEEEEEECCEEEEEecCcCCCccHHHHHHHHHHHHHHhcc-------CCeEEEEeCHHHHH
Confidence 56899999999743 3677755 333221 222224688999999999999998632 37899999999999
Q ss_pred HhhhhhhCCChHhHHHHHHhhhh-ccchh
Q psy4359 90 QSLQDIFSPNLHTLRQIMSLWHE-DWNYL 117 (220)
Q Consensus 90 ~ai~~~~~P~~~Di~~I~~~Wq~-~W~~~ 117 (220)
++|..+ ...|+. .|..+
T Consensus 78 ~~i~~w-----------~~~W~~n~~~~~ 95 (158)
T 2e4l_A 78 QGIMTW-----------IHGWKKKGWMTS 95 (158)
T ss_dssp HHHHTH-----------HHHHHHTTTBCT
T ss_pred HHHHHH-----------HHHHHHcccccc
Confidence 999987 666854 78653
No 8
>1ril_A Ribonuclease H; hydrolase(endoribonuclease); 2.80A {Thermus thermophilus} SCOP: c.55.3.1 PDB: 2rpi_A
Probab=99.21 E-value=7e-12 Score=100.70 Aligned_cols=85 Identities=14% Similarity=0.098 Sum_probs=62.9
Q ss_pred CceeeeecCCCCCC--cceeeee--CCCcce-eeecchhhhhhhHHHHHHHHHHHHHHHhhhhhhccCceEEeccchHHH
Q psy4359 15 QSTKIYTDASKNDS--SVSAAFW--SPDFSF-KVKLNPLLSICNAELMAILYAVYFILANCLSEARNSSFLLCTDSLSAL 89 (220)
Q Consensus 15 ~~~~IyTDgSk~~~--~~G~ai~--~~~~~~-~~~l~~~~si~~AEl~AI~~AL~~~~~~~~~~~~~~~~~I~sDS~sal 89 (220)
..+.||||||+..+ ..|+|++ ..+... ..+..+.+|++.||+.|++.||+.+.+ ..++.|+|||++++
T Consensus 7 ~~i~iytDGs~~~n~g~~G~G~v~~~~~~~~~~~~~~~~~Tnn~aEl~Ai~~AL~~~~~-------~~~v~I~tDS~~vi 79 (166)
T 1ril_A 7 KRVALFTDGACLGNPGPGGWAALLRFHAHEKLLSGGEACTTNNRMELKAAIEGLKALKE-------PCEVDLYTDSHYLK 79 (166)
T ss_dssp CCCCEEEEEEESSTTEEEEEEEEECBTTBCCEECCEEEEECHHHHHHHHHHHHHHSCCS-------CCEEEEECCCHHHH
T ss_pred ccEEEEECccccCCCCCEEEEEEEEECCEEEEEecCCCCCcHHHHHHHHHHHHHHHhcc-------CCeEEEEeChHHHH
Confidence 46899999999753 3677755 333221 222234688999999999999998643 35899999999999
Q ss_pred Hhhhh-hhCCChHhHHHHHHhhhh-ccchh
Q psy4359 90 QSLQD-IFSPNLHTLRQIMSLWHE-DWNYL 117 (220)
Q Consensus 90 ~ai~~-~~~P~~~Di~~I~~~Wq~-~W~~~ 117 (220)
++|.. + ...|+. .|..+
T Consensus 80 ~~i~~~w-----------~~~W~~~~w~~~ 98 (166)
T 1ril_A 80 KAFTEGW-----------LEGWRKRGWRTA 98 (166)
T ss_dssp HHHHSSH-----------HHHHHHTTSBCT
T ss_pred HHHhhhH-----------HHHHHhcccccc
Confidence 99998 7 667854 68753
No 9
>3qio_A GAG-POL polyprotein; RNAse H, inhibitor, nuclease, transferase, hydrolase- complex; HET: QID; 1.40A {Hiv-1 M} SCOP: c.55.3.1 PDB: 3qin_A* 3hyf_A* 1o1w_A 3lp3_A* 1hrh_A 3k2p_A* 1rdh_A
Probab=99.20 E-value=2.2e-11 Score=96.33 Aligned_cols=85 Identities=21% Similarity=0.210 Sum_probs=59.8
Q ss_pred hCCCceeeeecCCCCCC--cceeeee-CCCcceeeecchhhhhhhHHHHHHHHHHHHHHHhhhhhhccCceEEeccchHH
Q psy4359 12 KYPQSTKIYTDASKNDS--SVSAAFW-SPDFSFKVKLNPLLSICNAELMAILYAVYFILANCLSEARNSSFLLCTDSLSA 88 (220)
Q Consensus 12 ~~~~~~~IyTDgSk~~~--~~G~ai~-~~~~~~~~~l~~~~si~~AEl~AI~~AL~~~~~~~~~~~~~~~~~I~sDS~sa 88 (220)
..++.+.||||||+..+ ..|+|++ ..+....+.+ +.+|++.||+.|++.||+.+ ..++.|+|||+++
T Consensus 8 P~~~~~~iytDGs~~~n~g~~g~G~v~~~~~~~~~~~-~~~Tnn~aEl~A~i~AL~~~---------~~~v~i~tDS~~v 77 (150)
T 3qio_A 8 PIVGAETFYVDGAANRETKLGKAGYVTNRGRQKVVTL-TDTTNQKTELQAIYLALQDS---------GLEVNIVTDSQYA 77 (150)
T ss_dssp CCTTCEEEEEEEEECTTTCCEEEEEEETTSCEEEEEE-SSCCHHHHHHHHHHHHHHHS---------CSEEEEEESCHHH
T ss_pred CCCCCEEEEEccCCCCCCCCeEEEEEEEcCCEEEEeC-CCCCHHHHHHHHHHHHHHhC---------CCcEEEEeCcHHH
Confidence 44567999999998643 2566644 3333333444 57899999999999999973 3789999999999
Q ss_pred HHhhhhhhCCChHhHHHHHHhhh-hccchh
Q psy4359 89 LQSLQDIFSPNLHTLRQIMSLWH-EDWNYL 117 (220)
Q Consensus 89 l~ai~~~~~P~~~Di~~I~~~Wq-~~W~~~ 117 (220)
+++|+.+ ...|+ +.|..+
T Consensus 78 ~~~i~~w-----------~~~W~~~gw~~~ 96 (150)
T 3qio_A 78 LGIITQW-----------IHNWKKRGWKTA 96 (150)
T ss_dssp HHHHHHH-----------HHHHCC------
T ss_pred HHHHHHH-----------HHHHhhcCcCcC
Confidence 9999987 66784 478764
No 10
>2lsn_A Reverse transcriptase; RNAse H, viral protein; NMR {Simian foamy virus}
Probab=99.18 E-value=2.4e-11 Score=97.76 Aligned_cols=87 Identities=18% Similarity=0.142 Sum_probs=54.2
Q ss_pred CceeeeecCCCCCC-c------ceeeee--CC-Ccceeeecchh----hhhhhHHHHHHHHHHHHHHHhhhhhhccCceE
Q psy4359 15 QSTKIYTDASKNDS-S------VSAAFW--SP-DFSFKVKLNPL----LSICNAELMAILYAVYFILANCLSEARNSSFL 80 (220)
Q Consensus 15 ~~~~IyTDgSk~~~-~------~G~ai~--~~-~~~~~~~l~~~----~si~~AEl~AI~~AL~~~~~~~~~~~~~~~~~ 80 (220)
..++||||||+..+ + .|+||+ .. ......+-... .+...||+.|+..||+.+.+. ..++.
T Consensus 6 ~evviYTDGsc~gNpgp~~~~~aG~Gv~~~~~~~~~~~~~~~~~~tnn~te~~Aei~Al~~al~~al~~------~~~v~ 79 (165)
T 2lsn_A 6 YEGVFYTDGSAIKSPDPTKSNNAGMGIVHATYKPEYQVLNQWSIPLGNHTAQMAEIAAVEFACKKALKI------PGPVL 79 (165)
T ss_dssp CSEEEEEEEEEEECSSCTTCEEEEEEEEEECCSSSCCEEEEEEEEESSCCHHHHHHHHHHHHHHHHHHS------SSCEE
T ss_pred ceEEEEEcCCCCCCCCCCCCCcEEEEEEEEECCCccEEeccccCCchHHHHHHHHHHHHHHHHHHHhcC------CCeEE
Confidence 34789999998643 2 678865 22 22222221222 333445555555555544443 56899
Q ss_pred EeccchHHHHhhhhhhCCChHhHHHHHHhhh-hccchhh
Q psy4359 81 LCTDSLSALQSLQDIFSPNLHTLRQIMSLWH-EDWNYLI 118 (220)
Q Consensus 81 I~sDS~sal~ai~~~~~P~~~Di~~I~~~Wq-~~W~~~~ 118 (220)
|+|||++++++|..+ ...|+ +.|..+.
T Consensus 80 I~TDS~Yvi~~it~w-----------~~~Wk~ngw~~~~ 107 (165)
T 2lsn_A 80 VITDSFYVAESANKE-----------LPYWKSNGFVNNK 107 (165)
T ss_dssp EEESCHHHHHHHHTH-----------HHHHHHTTSCSCS
T ss_pred EEeChHHHHhhhhhh-----------hhhheeccccccC
Confidence 999999999999888 77785 4787643
No 11
>3p1g_A Xenotropic murine leukemia virus-related virus (X H domain; XMRV, RNAse H, reverse transcriptase, transcription; 1.50A {Xenotropic mulv-related virus} PDB: 3v1q_A 3v1o_A 3v1r_A* 2hb5_A 4e89_A
Probab=99.13 E-value=4.8e-11 Score=95.99 Aligned_cols=69 Identities=23% Similarity=0.128 Sum_probs=54.1
Q ss_pred ceeeeecCCCCC--Ccceee--eeCCCcce-eeecchhhhhhhHHHHHHHHHHHHHHHhhhhhhccCceEEeccchHHHH
Q psy4359 16 STKIYTDASKND--SSVSAA--FWSPDFSF-KVKLNPLLSICNAELMAILYAVYFILANCLSEARNSSFLLCTDSLSALQ 90 (220)
Q Consensus 16 ~~~IyTDgSk~~--~~~G~a--i~~~~~~~-~~~l~~~~si~~AEl~AI~~AL~~~~~~~~~~~~~~~~~I~sDS~sal~ 90 (220)
.+.||||||+.. |..|+| ++.++... ..+++..+|++.||+.|++.||+++ . ..++.|+|||+++++
T Consensus 23 ~i~iytDGs~~~npG~~g~G~vi~~~~~~~~~~~~~~~~Tnn~aEl~Ai~~AL~~~--~------~~~v~I~tDS~~vi~ 94 (165)
T 3p1g_A 23 DYTWYTDGSSFLQEGQRRAGAAVTTETEVIWARALPAGTSAQRAELIALTQALKMA--E------GKKLNVYTDSRYAFA 94 (165)
T ss_dssp SEEEEEEEEEEEETTEEEEEEEEECSSCEEEEEEECTTCCHHHHHHHHHHHHHHHT--B------TSEEEEEECCHHHHH
T ss_pred CEEEEEEcccCCCCCceEEEEEEEECCEEEEEecCCCCCcHHHHHHHHHHHHHHHc--c------CceEEEEEchHHHHh
Confidence 489999999973 435555 44444332 2356778899999999999999987 2 578999999999999
Q ss_pred hh
Q psy4359 91 SL 92 (220)
Q Consensus 91 ai 92 (220)
+|
T Consensus 95 ~i 96 (165)
T 3p1g_A 95 TA 96 (165)
T ss_dssp HH
T ss_pred hh
Confidence 88
No 12
>2ehg_A Ribonuclease HI; RNAse HI, hyperthermophilic archaeon, D stranded RNA-dependent RNAse, hydrolase; 1.60A {Sulfolobus tokodaii} PDB: 3aly_A
Probab=99.10 E-value=1.1e-10 Score=91.46 Aligned_cols=76 Identities=13% Similarity=0.056 Sum_probs=58.0
Q ss_pred eeeeecCCCC--C-Cccee-eee--CCCcce-eee--cc---hhhhhhhHHHHHHHHHHHHHHHhhhhhhccCceEEecc
Q psy4359 17 TKIYTDASKN--D-SSVSA-AFW--SPDFSF-KVK--LN---PLLSICNAELMAILYAVYFILANCLSEARNSSFLLCTD 84 (220)
Q Consensus 17 ~~IyTDgSk~--~-~~~G~-ai~--~~~~~~-~~~--l~---~~~si~~AEl~AI~~AL~~~~~~~~~~~~~~~~~I~sD 84 (220)
+.||||||.. + +..|+ |++ +.+... .++ .. +.+|++.||+.|++.||+.+.+. ...++.|+||
T Consensus 2 ~~iy~DGs~~~~n~g~~G~~G~vi~~~g~~~~~~~~~~~~~~~~~tnn~aEl~A~~~aL~~a~~~-----g~~~v~i~tD 76 (149)
T 2ehg_A 2 IIGYFDGLCEPKNPGGIATFGFVIYLDNRKIEGYGLAEKPFSINSTNNVAEYSGLICLMETMLRL-----GISSPIIKGD 76 (149)
T ss_dssp CEEEEEEEEESSSSSSEEEEEEEEECSSCEEEEEEECSCTTCTTCCHHHHHHHHHHHHHHHHHHH-----TCCSCEEEES
T ss_pred EEEEEeeccCCCCCChheEEEEEEEECCEEEEEeccccCCCCCCccHHHHHHHHHHHHHHHHHHc-----CCCEEEEEeC
Confidence 5799999987 2 45664 643 433222 222 22 37889999999999999999886 5689999999
Q ss_pred chHHHHhhhhhhC
Q psy4359 85 SLSALQSLQDIFS 97 (220)
Q Consensus 85 S~sal~ai~~~~~ 97 (220)
|+.+++.++++|.
T Consensus 77 S~~vi~~i~~~w~ 89 (149)
T 2ehg_A 77 SQLVIKQMNGEYK 89 (149)
T ss_dssp CHHHHHHHTTSSC
T ss_pred hHHHHHHHhCccc
Confidence 9999999999865
No 13
>4htu_A Ribonuclease H, RNAse H; 5-chloro-2'-deoxyuridine, W-C base PAIR, wobble base PAIR, D helix; HET: DNA UCL; 1.49A {Bacillus halodurans} PDB: 3d0p_A* 4hue_A* 4huf_A* 4hug_A* 1zbf_A 1zbi_A 2g8u_A 3uld_A* 3ey1_A* 3twh_A* 2g8f_A 2g8v_A 2g8w_A 2g8i_A 2g8h_A 2g8k_A 3i8d_A* 2r7y_A* 1zbl_A
Probab=99.06 E-value=1.5e-10 Score=90.07 Aligned_cols=76 Identities=16% Similarity=0.140 Sum_probs=56.2
Q ss_pred CCceeeeecCCCCCC--ccee-eee-CCCc-ceeeecchhhhhhhHHHHHHHHHHHHHHHhhhhhhccCceEEeccchHH
Q psy4359 14 PQSTKIYTDASKNDS--SVSA-AFW-SPDF-SFKVKLNPLLSICNAELMAILYAVYFILANCLSEARNSSFLLCTDSLSA 88 (220)
Q Consensus 14 ~~~~~IyTDgSk~~~--~~G~-ai~-~~~~-~~~~~l~~~~si~~AEl~AI~~AL~~~~~~~~~~~~~~~~~I~sDS~sa 88 (220)
+....||||||+..+ ..|+ ||+ ..+. ....+....+|++.||++|++.||+.+.+. ..++.|+|||+.+
T Consensus 3 p~~~~iytDGac~GNPGp~G~ggV~~~~g~~~~~~g~~~~tTNN~aEl~A~i~aL~~l~~~------~~~v~i~tDSqyV 76 (134)
T 4htu_A 3 IIWESLSVDVGSQGNPGIVEYKGVDTKTGEVLFEREPIPIGTNNMGEFLAIVHGLRYLKER------NSRKPIYSNSQTA 76 (134)
T ss_dssp CCSSSEEEEEEEETTTEEEEEEEEETTTCCEEEEEEEEEEECHHHHHHHHHHHHHHHHHHT------TCCCCEEESCHHH
T ss_pred ccceEEEEeeccCCCCCCeEEEEEEEECCEEEEEecCCCCCchHHHHHHHHHHHHHHHHhC------CCCEEEEcchHHH
Confidence 566789999998643 3667 455 3222 222333347899999999999999999775 3348999999999
Q ss_pred HHhhhhh
Q psy4359 89 LQSLQDI 95 (220)
Q Consensus 89 l~ai~~~ 95 (220)
++.|.+.
T Consensus 77 i~wi~~~ 83 (134)
T 4htu_A 77 IKWVKDK 83 (134)
T ss_dssp HHHHHHT
T ss_pred HHHHHcC
Confidence 9988875
No 14
>1zbf_A Ribonuclease H-related protein; RNAse H, RNA/DNA hybrid, DDE motif, hydrolase; 1.50A {Bacillus halodurans} SCOP: c.55.3.1 PDB: 1zbi_A 2g8u_A 2g8i_A 2g8h_A 2g8k_A 2g8f_A 2g8v_A 2g8w_A 3ey1_A* 1zbl_A 3d0p_A* 3i8d_A* 2r7y_A*
Probab=99.02 E-value=2.9e-10 Score=89.30 Aligned_cols=77 Identities=12% Similarity=0.075 Sum_probs=57.7
Q ss_pred CCceeeeecCCCCC--Ccceeeee-C-CCcce-eeecchhhhhhhHHHHHHHHHHHHHHHhhhhhhccCceEEeccchHH
Q psy4359 14 PQSTKIYTDASKND--SSVSAAFW-S-PDFSF-KVKLNPLLSICNAELMAILYAVYFILANCLSEARNSSFLLCTDSLSA 88 (220)
Q Consensus 14 ~~~~~IyTDgSk~~--~~~G~ai~-~-~~~~~-~~~l~~~~si~~AEl~AI~~AL~~~~~~~~~~~~~~~~~I~sDS~sa 88 (220)
+..+.||||||+.. +..|+|++ . .+... ..+....+|.+.||++|++.||+.+.+. .. ++.|+|||+.+
T Consensus 9 ~~~~~iy~DGa~~gNpG~~G~G~vl~~~g~~~~~~~~~~~~TNN~aEl~A~i~aL~~~~~~-----~~-~v~i~tDS~~v 82 (142)
T 1zbf_A 9 IIWESLSVDVGSQGNPGIVEYKGVDTKTGEVLFEREPIPIGTNNMGEFLAIVHGLRYLKER-----NS-RKPIYSNSQTA 82 (142)
T ss_dssp CCSSSEEEEEEECSSSEEEEEEEEETTTCCEEEECCCEEEECHHHHHHHHHHHHHHHHHHT-----TC-CCCEEESCHHH
T ss_pred CCeEEEEEeeccCCCCCCeEEEEEEEeCCEEEEEecccCCcCcHHHHHHHHHHHHHHHHhC-----CC-eEEEEEehHHH
Confidence 35679999999864 34677755 2 22222 1122236789999999999999999875 34 89999999999
Q ss_pred HHhhhhhh
Q psy4359 89 LQSLQDIF 96 (220)
Q Consensus 89 l~ai~~~~ 96 (220)
++.+++.+
T Consensus 83 i~w~~~~~ 90 (142)
T 1zbf_A 83 IKWVKDKK 90 (142)
T ss_dssp HHHHHHTC
T ss_pred HHHHHcCC
Confidence 99998876
No 15
>2zd1_A Reverse transcriptase/ribonuclease H; P51/P66, hetero dimer, NNRTI, nonnucleoside inhibitor, AIDS, HIV, rilpivirine, diarylpyrimidine, DAPY, DNA recombination; HET: T27; 1.80A {Human immunodeficiency virus 1} PDB: 3is9_A* 3irx_A* 2ze2_A* 3bgr_A* 3qlh_A* 3klf_A* 3qo9_A* 1dlo_A 1bqm_A 2be2_A* 1s6q_A* 1s6p_A* 1s9g_A* 1suq_A* 2b5j_A* 2b6a_A* 2ban_A* 1s9e_A* 1hni_A* 1hnv_A* ...
Probab=98.76 E-value=5.6e-09 Score=98.14 Aligned_cols=81 Identities=22% Similarity=0.123 Sum_probs=58.9
Q ss_pred CCCceeeeecCCCCCC-c-ceeeee-CCCcceeeecchhhhhhhHHHHHHHHHHHHHHHhhhhhhccCceEEeccchHHH
Q psy4359 13 YPQSTKIYTDASKNDS-S-VSAAFW-SPDFSFKVKLNPLLSICNAELMAILYAVYFILANCLSEARNSSFLLCTDSLSAL 89 (220)
Q Consensus 13 ~~~~~~IyTDgSk~~~-~-~G~ai~-~~~~~~~~~l~~~~si~~AEl~AI~~AL~~~~~~~~~~~~~~~~~I~sDS~sal 89 (220)
..+.+.||||||+..+ + .|+|++ ..+....++. ..+|++.||+.|++.||+.+ ..++.|+|||++++
T Consensus 436 ~~~~~~iytDGs~~~n~g~~g~g~v~~~~~~~~~~~-~~~TNn~aEl~Ai~~aL~~~---------~~~v~I~tDS~~vi 505 (557)
T 2zd1_A 436 IVGAETFYVDGAANRETKLGKAGYVTNKGRQKVVPL-TNTTNQKTELQAIYLALQDS---------GLEVNIVTDSQYAL 505 (557)
T ss_dssp CTTSCEEEEEEEECTTTCCEEEEEEETTSCEEEEEE-CSCCHHHHHHHHHHHHHHHS---------CSEEEEEECCHHHH
T ss_pred CCCCEEEEEccCCCCCCCceEEEEEEECCcEEEecC-CCCCHHHHHHHHHHHHHHhC---------CCcEEEEeChHHHH
Confidence 4556899999998643 3 566644 3333333443 46889999999999999987 35799999999999
Q ss_pred HhhhhhhCCChHhH
Q psy4359 90 QSLQDIFSPNLHTL 103 (220)
Q Consensus 90 ~ai~~~~~P~~~Di 103 (220)
++|+.+......++
T Consensus 506 ~~i~~~~~~~~~~l 519 (557)
T 2zd1_A 506 GIIQAQPDKSESEL 519 (557)
T ss_dssp HHHTTCCSEESSHH
T ss_pred HHHhcCCccCCHHH
Confidence 99988644323344
No 16
>1mu2_A HIV-2 RT; HIV-2 reverse transcriptase, AIDS, polymerase, drug design, transferase; 2.35A {Human immunodeficiency virus 2} SCOP: c.55.3.1 e.8.1.2 PDB: 1mu2_B
Probab=98.73 E-value=9e-09 Score=96.68 Aligned_cols=73 Identities=22% Similarity=0.119 Sum_probs=55.3
Q ss_pred CCCceeeeecCCCCCCc--ceeeee--CCCcceeeecchhhhhhhHHHHHHHHHHHHHHHhhhhhhccCceEEeccchHH
Q psy4359 13 YPQSTKIYTDASKNDSS--VSAAFW--SPDFSFKVKLNPLLSICNAELMAILYAVYFILANCLSEARNSSFLLCTDSLSA 88 (220)
Q Consensus 13 ~~~~~~IyTDgSk~~~~--~G~ai~--~~~~~~~~~l~~~~si~~AEl~AI~~AL~~~~~~~~~~~~~~~~~I~sDS~sa 88 (220)
.++.+.||||||+..++ .|+|++ .++ ..... ...+|++.||+.|++.||+. . ..++.|+|||+++
T Consensus 433 ~~~~~~iytDGs~~~n~g~~g~G~v~~~~~-~~~~~-~~~~TNn~aEl~A~i~aL~~---~------~~~v~I~tDS~~v 501 (555)
T 1mu2_A 433 IPGAETFYTDGSCNRQSKEGKAGYVTDRGK-DKVKK-LEQTTNQQAELEAFAMALTD---S------GPKVNIIVDSQYV 501 (555)
T ss_dssp CTTCEEEEEEEEECTTTCCEEEEEEETTSC-EEEEE-ESSCCHHHHHHHHHHHHHHT---S------CSEEEEEESCHHH
T ss_pred CCCceEEEEcccccCCCCCceEEEEEEeCC-Eeecc-CCCCCHHHHHHHHHHHHHHc---C------CCeEEEEEehHHH
Confidence 35568999999987432 566644 333 22333 34688999999999999997 2 5789999999999
Q ss_pred HHhhhhhh
Q psy4359 89 LQSLQDIF 96 (220)
Q Consensus 89 l~ai~~~~ 96 (220)
+++++++.
T Consensus 502 ~~~i~~~~ 509 (555)
T 1mu2_A 502 MGIVASQP 509 (555)
T ss_dssp HHHHHTCC
T ss_pred HHHHhccc
Confidence 99998753
No 17
>1rw3_A POL polyprotein; RNA and DNA dependent DNA polymerase, reverse transcriptase, transferase, replication; 3.00A {Moloney murine leukemia virus} SCOP: e.8.1.2
Probab=93.45 E-value=0.046 Score=49.50 Aligned_cols=75 Identities=5% Similarity=-0.054 Sum_probs=48.8
Q ss_pred CCceeeeecCCCCCCcceeeeeCCC---c-ce------eeecchhhhhhhHHHHHHHHHHHHHHHhhhhhhccCceEEec
Q psy4359 14 PQSTKIYTDASKNDSSVSAAFWSPD---F-SF------KVKLNPLLSICNAELMAILYAVYFILANCLSEARNSSFLLCT 83 (220)
Q Consensus 14 ~~~~~IyTDgSk~~~~~G~ai~~~~---~-~~------~~~l~~~~si~~AEl~AI~~AL~~~~~~~~~~~~~~~~~I~s 83 (220)
...+.+|||+|.. ++|+.....+ . .. .-......+++..|++||..|++....+- .+.+++|+|
T Consensus 344 ~~~~~l~~DAS~~--~~gavL~q~~~~~~~~i~y~Sk~l~~~e~~ys~~ekEllAi~~a~~~~~~yl----~g~~~~v~t 417 (455)
T 1rw3_A 344 TKPFELFVDEKQG--YAKGVLTQKLGPWRRPVAYLSKKLDPVAAGWPPCLRMVAAIAVLTKDAGKLT----MGQPLVIKA 417 (455)
T ss_dssp CCTTSCEEEEEEC--SSSBEECCBCTTTTCCCCCCCBCSCSSCSSSCCSSHHHHHHHHHHHHHHGGG----CSSCEEEEC
T ss_pred CCcEEEEEeccCC--cceeEEEEecCCcEEEEEEEcccCCccccccchHHHHHHHHHHHHHHHHHHc----CCCcEEEEe
Confidence 3456899999853 3343222221 1 01 11222356789999999999999987752 467999999
Q ss_pred cchHHHHhhhhh
Q psy4359 84 DSLSALQSLQDI 95 (220)
Q Consensus 84 DS~sal~ai~~~ 95 (220)
|+. ++.-+.++
T Consensus 418 Dh~-~~~~l~~~ 428 (455)
T 1rw3_A 418 PHA-VEALVKQP 428 (455)
T ss_dssp SSC-TTTTSSST
T ss_pred cCh-HHHHhCCC
Confidence 996 66666554
No 18
>2zd1_B P51 RT; P51/P66, hetero dimer, NNRTI, nonnucleoside inhibitor, AIDS, HIV, rilpivirine, diarylpyrimidine, DAPY, DNA recombination; HET: T27; 1.80A {Human immunodeficiency virus 1} SCOP: e.8.1.2 PDB: 2ykm_B* 2ykn_B* 2ze2_B* 3bgr_B* 3ig1_B* 3irx_B* 3is9_B* 3qo9_B* 3v4i_B* 3v6d_B* 3v81_B* 3klf_B* 3kk1_B* 3kjv_B* 3kk2_B* 3kk3_B* 2be2_B* 1n5y_B* 1bqm_B* 1n6q_B* ...
Probab=90.33 E-value=0.26 Score=44.39 Aligned_cols=72 Identities=4% Similarity=-0.148 Sum_probs=43.5
Q ss_pred CCceeeeecCCCCCCcceeeeeCCCc----ceeeecchhhhhhhHHHHH-HHHHHHHHHHhhhhhhccCceEEeccchH
Q psy4359 14 PQSTKIYTDASKNDSSVSAAFWSPDF----SFKVKLNPLLSICNAELMA-ILYAVYFILANCLSEARNSSFLLCTDSLS 87 (220)
Q Consensus 14 ~~~~~IyTDgSk~~~~~G~ai~~~~~----~~~~~l~~~~si~~AEl~A-I~~AL~~~~~~~~~~~~~~~~~I~sDS~s 87 (220)
...+.+|||+|.. |.+|+.+.+++. +..+......+.+.-|++| |+.||+....+- -......++++||.+.
T Consensus 322 ~~~~~l~~das~~-g~~g~vl~q~~~~~~~s~~~~~~~~y~~~~~e~la~vv~al~~~r~yl-~G~~~~~~i~~td~~~ 398 (428)
T 2zd1_B 322 SKDLIAEIQKQGQ-GQWTYQIYQEPFKNLKTGKYARMRGAHTNDVKQLTEAVQKITTESIVI-WGKTPKFKLPIQKETW 398 (428)
T ss_dssp TSCCEEEEEEEET-TEEEEEEESSTTCEEEEEEEECCSSCTTCHHHHHHHHHHHHHHHHHHH-HSSCCEEEESSCHHHH
T ss_pred CCCEEEEEecCCC-CcEEEEEecCCCceeeecccchhhhcccchHHHHHHHHHHhhccceEE-ECCCCcEECCccHHHH
Confidence 3447899999953 233433334331 1224444455567788888 999999876641 1112456788999974
No 19
>2fr5_A Cytidine deaminase; tetrahydrouridine, protein-inhibitor COM alternate conformation of Arg68, hydrolase; HET: TYU; 1.48A {Mus musculus} SCOP: c.97.1.1 PDB: 1zab_A* 2fr6_A* 1mq0_A*
Probab=62.19 E-value=6.4 Score=30.19 Aligned_cols=54 Identities=20% Similarity=-0.049 Sum_probs=34.1
Q ss_pred CCcceeeeeCCCcceeeecch----hhhhhhHHHHHHHHHHHHHHHhhhhhhccCceEEeccch
Q psy4359 27 DSSVSAAFWSPDFSFKVKLNP----LLSICNAELMAILYAVYFILANCLSEARNSSFLLCTDSL 86 (220)
Q Consensus 27 ~~~~G~ai~~~~~~~~~~l~~----~~si~~AEl~AI~~AL~~~~~~~~~~~~~~~~~I~sDS~ 86 (220)
+..||+|++..+..+..|-.- +..-..||..||..|+..- ......+.|.+|..
T Consensus 35 ~f~VGAal~~~dG~i~~G~NvEnas~~~t~cAE~~Ai~~A~~~G------~~~l~~i~v~~~~~ 92 (146)
T 2fr5_A 35 RFPVGAALLTGDGRIFSGCNIENACYPLGVCAERTAIQKAISEG------YKDFRAIAISSDLQ 92 (146)
T ss_dssp CCCEEEEEEETTSCEEEEECBCCSSGGGCBCHHHHHHHHHHHTT------CCCEEEEEEEESCS
T ss_pred CCCEEEEEEeCCCcEEEEEeccccCCCCCcCHHHHHHHHHHhCC------CCceEEEEEEeCCC
Confidence 447999988433333333222 2234679999999998651 12467888888754
No 20
>2zd1_A Reverse transcriptase/ribonuclease H; P51/P66, hetero dimer, NNRTI, nonnucleoside inhibitor, AIDS, HIV, rilpivirine, diarylpyrimidine, DAPY, DNA recombination; HET: T27; 1.80A {Human immunodeficiency virus 1} PDB: 3is9_A* 3irx_A* 2ze2_A* 3bgr_A* 3qlh_A* 3klf_A* 3qo9_A* 1dlo_A 1bqm_A 2be2_A* 1s6q_A* 1s6p_A* 1s9g_A* 1suq_A* 2b5j_A* 2b6a_A* 2ban_A* 1s9e_A* 1hni_A* 1hnv_A* ...
Probab=57.28 E-value=9 Score=35.32 Aligned_cols=70 Identities=6% Similarity=-0.066 Sum_probs=40.2
Q ss_pred CceeeeecCCCCCCcceeeeeCCCc----ceeeecchhhhhhhHHHHH-HHHHHHHHHHhhhhhhccCceEE-eccchH
Q psy4359 15 QSTKIYTDASKNDSSVSAAFWSPDF----SFKVKLNPLLSICNAELMA-ILYAVYFILANCLSEARNSSFLL-CTDSLS 87 (220)
Q Consensus 15 ~~~~IyTDgSk~~~~~G~ai~~~~~----~~~~~l~~~~si~~AEl~A-I~~AL~~~~~~~~~~~~~~~~~I-~sDS~s 87 (220)
..+.+|||+|.. |.+|+.+.+... ...+......+.+.-|++| ++.||+....+- ......++| ++|++.
T Consensus 325 ~~~~l~~das~~-g~~g~vl~q~~~~~~~~~~~~~~~~y~~~e~e~la~vv~~l~~~~~~l--~g~~p~~~vp~~~~~~ 400 (557)
T 2zd1_A 325 KDLIAEIQKQGQ-GQWTYQIYQEPFKNLKTGKYARMRGAHTNDVKQLTEAVQKITTESIVI--WGKTPKFKLPIQKETW 400 (557)
T ss_dssp SCCEEEEEEEET-TEEEEEEEEETTEEEEEEEEECCSCSEECHHHHHHHHHHHHHHHHHHH--HSSCCEEEESBCHHHH
T ss_pred CCEEEEEecCCC-CcEEEEEecCCCceeeeeecccccccCCChHHHHHHHHHHhhhhheEE--eCCCCCEECCCcHHHH
Confidence 346799999964 223444333221 1124444455667789999 999988754431 011225666 788764
No 21
>3dmo_A Cytidine deaminase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, hydrolase; 1.60A {Burkholderia pseudomallei}
Probab=53.55 E-value=10 Score=28.85 Aligned_cols=54 Identities=17% Similarity=-0.007 Sum_probs=34.1
Q ss_pred cceeeeeCCCcceeeecchhhh----hhhHHHHHHHHHHHHHHHhhhhhhccCceEEeccch
Q psy4359 29 SVSAAFWSPDFSFKVKLNPLLS----ICNAELMAILYAVYFILANCLSEARNSSFLLCTDSL 86 (220)
Q Consensus 29 ~~G~ai~~~~~~~~~~l~~~~s----i~~AEl~AI~~AL~~~~~~~~~~~~~~~~~I~sDS~ 86 (220)
.||+|+...+..+..|-.-+.. -..||..||..|+..-.. ......+.|.+|..
T Consensus 33 ~VGAAll~~dG~iytG~NVEnasy~~t~CAEr~Ai~~Avs~G~~----~~~i~aiavv~~~~ 90 (138)
T 3dmo_A 33 KVGAALVTNDGKVFHGCNVENASYGLCNCAERTALFSALAAGYR----PGEFAAIAVVGETH 90 (138)
T ss_dssp CEEEEEEETTSCEEEEECBCCSSGGGCBCHHHHHHHHHHHTTCC----TTCEEEEEEEESCS
T ss_pred CEEEEEEeCCCCEEEEEeecccccccccCHHHHHHHHHHHcCCC----cccEEEEEEEcCCC
Confidence 6999988655555544333332 358999999999853211 11356778887764
No 22
>1di2_A XLRBPA, double stranded RNA binding protein A; protein-RNA complex, protein-RNA interactions, RNA-bining protein; 1.90A {Xenopus laevis} SCOP: d.50.1.1
Probab=51.95 E-value=21 Score=23.10 Aligned_cols=64 Identities=16% Similarity=0.023 Sum_probs=39.4
Q ss_pred CcchhHHHHhhhCCCceeeee----cCCCCCCcceeeeeCCCcceeeecchhhhhhhHHHHHHHHHHHHHH
Q psy4359 1 MIKSSFLEIVSKYPQSTKIYT----DASKNDSSVSAAFWSPDFSFKVKLNPLLSICNAELMAILYAVYFIL 67 (220)
Q Consensus 1 ~~~~~f~~i~~~~~~~~~IyT----DgSk~~~~~G~ai~~~~~~~~~~l~~~~si~~AEl~AI~~AL~~~~ 67 (220)
|+++...|+.++..-....|. +|-......-+.|..++. ++.....|-=.||..|...||+.+.
T Consensus 1 ~p~s~LqE~~q~~~~~~p~Y~~~~~~Gp~h~~~F~~~v~v~~~---~~~G~G~sKK~Aeq~AA~~al~~L~ 68 (69)
T 1di2_A 1 MPVGSLQELAVQKGWRLPEYTVAQESGPPHKREFTITCRVETF---VETGSGTSKQVAKRVAAEKLLTKFK 68 (69)
T ss_dssp CHHHHHHHHHHHHTCCCCEEEEEEEESCGGGCEEEEEEEETTE---EEEEEESSHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHcCCCCCEEEEEEeECCCCCCeEEEEEEECCE---EEEeecCCHHHHHHHHHHHHHHHHh
Confidence 677888887664433333343 444333333344444442 4555667888999999999998763
No 23
>3adj_A F21M12.9 protein; HYL1, miRNA processing, RNA binding protein, gene regulation; 3.00A {Arabidopsis thaliana} PDB: 2l2m_A
Probab=50.53 E-value=41 Score=22.23 Aligned_cols=65 Identities=15% Similarity=0.056 Sum_probs=40.5
Q ss_pred cchhHHHHhhhCCCceeeee----cCCCCCCcceeeeeCCCcceeeecchhhhhhhHHHHHHHHHHHHHHH
Q psy4359 2 IKSSFLEIVSKYPQSTKIYT----DASKNDSSVSAAFWSPDFSFKVKLNPLLSICNAELMAILYAVYFILA 68 (220)
Q Consensus 2 ~~~~f~~i~~~~~~~~~IyT----DgSk~~~~~G~ai~~~~~~~~~~l~~~~si~~AEl~AI~~AL~~~~~ 68 (220)
|++.+.|+.++.......|. +|-......-+.|..++ ..++.....|-=.||..|...||+.+..
T Consensus 6 ~Kt~LqE~~q~~~~~~p~Y~~~~~~Gp~h~~~F~~~v~v~g--~~~~~G~G~sKK~Aeq~AA~~al~~L~~ 74 (76)
T 3adj_A 6 CKNLLQEYAQKMNYAIPLYQCQKVETLGRVTQFTCTVEIGG--IKYTGAATRTKKDAEISAGRTALLAIQS 74 (76)
T ss_dssp HHHHHHHHHHTTTCCCCEEEEEEEECSSSCEEEEEEEEETT--EEEECCCBSSHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhCCCCCeEEEeeccCCCCCCcEEEEEEECC--EEEEEeccCCHHHHHHHHHHHHHHHHhh
Confidence 56778887665544444453 34333333334444344 2355556788899999999999998753
No 24
>3r2n_A Cytidine deaminase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 2.30A {Mycobacterium leprae} SCOP: c.97.1.0
Probab=49.27 E-value=13 Score=28.18 Aligned_cols=51 Identities=16% Similarity=-0.118 Sum_probs=31.1
Q ss_pred cceeeeeCCCcceeeecchhh----hhhhHHHHHHHHHHHHHHHhhhhhhccCceEEeccc
Q psy4359 29 SVSAAFWSPDFSFKVKLNPLL----SICNAELMAILYAVYFILANCLSEARNSSFLLCTDS 85 (220)
Q Consensus 29 ~~G~ai~~~~~~~~~~l~~~~----si~~AEl~AI~~AL~~~~~~~~~~~~~~~~~I~sDS 85 (220)
.||+|+...+..+..|-.-+. .-..||..||..|+..-. .....+.|.+|.
T Consensus 32 ~VGAAll~~dG~i~~G~NvEnasy~~t~CAEr~Ai~~Av~~G~------~~i~aiav~~~~ 86 (138)
T 3r2n_A 32 PVGVAGFVNDGRLITGVNVENASYGLALCAECSMISALYATGG------GRLVAVYCVDGN 86 (138)
T ss_dssp CCEEEEEETTSCEEEEECBCCSSGGGCBCHHHHHHHHHHHTTC------CCEEEEEEECTT
T ss_pred cEEEEEEeCCCcEEEEEcccccCCCCCcCHHHHHHHHHHHcCC------CceEEEEEEcCC
Confidence 799998855544443332222 235799999999976421 134556676653
No 25
>3mpz_A Cytidine deaminase; ssgcid, structu genomics, seattle structural genomics center for infectious hydrolase; 1.70A {Mycobacterium smegmatis} PDB: 3ijf_X 4f3w_A
Probab=46.71 E-value=15 Score=28.33 Aligned_cols=51 Identities=16% Similarity=-0.213 Sum_probs=32.2
Q ss_pred cceeeeeCCCcceeeecchhh----hhhhHHHHHHHHHHHHHHHhhhhhhccCceEEeccc
Q psy4359 29 SVSAAFWSPDFSFKVKLNPLL----SICNAELMAILYAVYFILANCLSEARNSSFLLCTDS 85 (220)
Q Consensus 29 ~~G~ai~~~~~~~~~~l~~~~----si~~AEl~AI~~AL~~~~~~~~~~~~~~~~~I~sDS 85 (220)
.||+|+...+..+..|-.-+. .-..||..||..|+..-. .....+.|.+|.
T Consensus 47 ~VGAAll~~dG~i~tG~NvEnasy~~t~CAEr~Ai~~Avs~G~------~~i~aiavv~~~ 101 (150)
T 3mpz_A 47 PVGAAALVDDGRTVTGCNVENVSYGLGLCAECAVVCALHSGGG------GRLVALSCVGPD 101 (150)
T ss_dssp CCEEEEEETTSCEEEEECBCCSSGGGCBCHHHHHHHHHHHTTC------CCEEEEEEECTT
T ss_pred CEEEEEEeCCCCEEEEEecccccCCccccHHHHHHHHHHHcCC------CceEEEEEEcCC
Confidence 799998855544443333222 236899999999987421 245567777664
No 26
>2nx8_A TRNA-specific adenosine deaminase; TAD, hydrolase; 2.00A {Streptococcus pyogenes serotype M6}
Probab=46.44 E-value=23 Score=27.83 Aligned_cols=52 Identities=19% Similarity=-0.019 Sum_probs=31.3
Q ss_pred CCcceeeeeCCCcceeeecchhhh----hhhHHHHHHHHHHHHHHHhhhhhhccCceEEec
Q psy4359 27 DSSVSAAFWSPDFSFKVKLNPLLS----ICNAELMAILYAVYFILANCLSEARNSSFLLCT 83 (220)
Q Consensus 27 ~~~~G~ai~~~~~~~~~~l~~~~s----i~~AEl~AI~~AL~~~~~~~~~~~~~~~~~I~s 83 (220)
+..||+.|+..+.....+...... .--||..||..|.+..... .....++++
T Consensus 35 ~~pVGAVIV~~g~Ii~~G~N~~~~~~d~t~HAE~~AI~~a~~~~~~~-----~l~g~tlYv 90 (179)
T 2nx8_A 35 EIPIGCVIVKDGEIIGRGHNAREESNQAIMHAEMMAINEANAHEGNW-----RLLDTTLFV 90 (179)
T ss_dssp SCCCEEEEEETTEEEEEEECCHHHHTCTTCCHHHHHHHHHHHHHTSS-----CCTTEEEEE
T ss_pred CCCEEEEEEECCEEEEEEECCCCCcCCCccCHHHHHHHHHHHHcCCC-----cccceEEEE
Confidence 456899988655444434332222 5679999999987754322 234555555
No 27
>2a8n_A Cytidine and deoxycytidylate deaminase; RNA editing, RNA binding protein; 1.60A {Agrobacterium tumefaciens} SCOP: c.97.1.2
Probab=45.91 E-value=23 Score=26.62 Aligned_cols=52 Identities=15% Similarity=0.013 Sum_probs=31.6
Q ss_pred CCcceeeeeCCCcceeeecchhhh----hhhHHHHHHHHHHHHHHHhhhhhhccCceEEec
Q psy4359 27 DSSVSAAFWSPDFSFKVKLNPLLS----ICNAELMAILYAVYFILANCLSEARNSSFLLCT 83 (220)
Q Consensus 27 ~~~~G~ai~~~~~~~~~~l~~~~s----i~~AEl~AI~~AL~~~~~~~~~~~~~~~~~I~s 83 (220)
+..||+.++..+.....+...... .--||..||..|.+..... .....++++
T Consensus 23 ~~~VGAviv~~g~Ii~~G~N~~~~~~~~~~HAE~~Ai~~a~~~~~~~-----~~~~~tly~ 78 (144)
T 2a8n_A 23 EVPIGAVLVLDGRVIARSGNRTRELNDVTAHAEIAVIRMACEALGQE-----RLPGADLYV 78 (144)
T ss_dssp SCCCEEEEEETTEEEEEEECCHHHHTCTTCCHHHHHHHHHHHHHTCS-----CCTTCEEEE
T ss_pred CCCEEEEEEECCEEEEEEECCCCCCCCCcCCHHHHHHHHHHHHcCCC-----ccCCeEEEE
Confidence 456899988644443344333322 4679999999997753322 345566665
No 28
>1wkq_A Guanine deaminase; domain SWAP, the cytidine deaminase superfamily, substrate specificity, structural plasticity, hydrolase; 1.17A {Bacillus subtilis} SCOP: c.97.1.2 PDB: 1tiy_A
Probab=44.71 E-value=26 Score=27.13 Aligned_cols=52 Identities=19% Similarity=0.100 Sum_probs=32.2
Q ss_pred CCcceeeeeCCCcceeeecchhh----hhhhHHHHHHHHHHHHHHHhhhhhhccCceEEec
Q psy4359 27 DSSVSAAFWSPDFSFKVKLNPLL----SICNAELMAILYAVYFILANCLSEARNSSFLLCT 83 (220)
Q Consensus 27 ~~~~G~ai~~~~~~~~~~l~~~~----si~~AEl~AI~~AL~~~~~~~~~~~~~~~~~I~s 83 (220)
+..||+.|+..+..+..+..... ..--||..||..|-+..... .....++++
T Consensus 31 ~~pVGAVIV~~g~Ii~~G~N~~~~~~d~~~HAE~~AI~~a~~~~~~~-----~l~g~tlYv 86 (164)
T 1wkq_A 31 GGPFGAVIVKDGAIIAEGQNNVTTSNDPTAHAEVTAIRKACKVLGAY-----QLDDCILYT 86 (164)
T ss_dssp SSSCEEEEEETTEEEEEEECCHHHHTCTTCCHHHHHHHHHHHHHTSS-----SCTTEEEEE
T ss_pred CCCEEEEEEECCEEEEEEecCCcCCCCcccCHHHHHHHHHHHHcCCC-----CcCceEEEE
Confidence 55699998855444433333222 25679999999988754322 355667766
No 29
>1wwr_A TRNA adenosine deaminase TADA; homodimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, hydrolase; 1.80A {Aquifex aeolicus} SCOP: c.97.1.2
Probab=44.07 E-value=26 Score=27.33 Aligned_cols=52 Identities=17% Similarity=0.060 Sum_probs=31.9
Q ss_pred CCcceeeeeCCCcceeeecchhhh----hhhHHHHHHHHHHHHHHHhhhhhhccCceEEec
Q psy4359 27 DSSVSAAFWSPDFSFKVKLNPLLS----ICNAELMAILYAVYFILANCLSEARNSSFLLCT 83 (220)
Q Consensus 27 ~~~~G~ai~~~~~~~~~~l~~~~s----i~~AEl~AI~~AL~~~~~~~~~~~~~~~~~I~s 83 (220)
+..||+.++..+.....+...... .--||..||..|.+..... .....++++
T Consensus 42 ~~pVGAvIV~dg~Ii~~G~N~~~~~~d~t~HAE~~AI~~a~~~~g~~-----~l~~~tlYv 97 (171)
T 1wwr_A 42 EVPVGAIIVKEGEIISKAHNSVEELKDPTAHAEMLAIKEACRRLNTK-----YLEGCELYV 97 (171)
T ss_dssp SCCCEEEEEETTEEEEEEECCHHHHTCTTCCHHHHHHHHHHHHHTCS-----CCTTEEEEE
T ss_pred CCCEEEEEEECCEEEEEEECCCCccCCcccCHHHHHHHHHHHHcCCC-----ccCceEEEE
Confidence 456899988644443334332222 4679999999988754322 345667765
No 30
>2d30_A Cytidine deaminase; purines, pyrimidines, nucleosides, nucleotides, salvage of nucleosides and nucleotides, structural genomics; 2.40A {Bacillus anthracis} SCOP: c.97.1.1
Probab=42.51 E-value=14 Score=28.05 Aligned_cols=52 Identities=21% Similarity=0.055 Sum_probs=33.4
Q ss_pred cceeeeeCCCcceeeecc----hhhhhhhHHHHHHHHHHHHHHHhhhhhhccCceEEeccch
Q psy4359 29 SVSAAFWSPDFSFKVKLN----PLLSICNAELMAILYAVYFILANCLSEARNSSFLLCTDSL 86 (220)
Q Consensus 29 ~~G~ai~~~~~~~~~~l~----~~~si~~AEl~AI~~AL~~~~~~~~~~~~~~~~~I~sDS~ 86 (220)
.||+|++..+..+..|-. .+..--.||..||..|+..- ......+.|.+|..
T Consensus 34 ~VGAAll~~dG~i~~G~NvEnasy~~t~CAEr~Ai~~Avs~G------~~~~~aiav~~~~~ 89 (141)
T 2d30_A 34 QVGAALLTQDGKVYRGCNVENASYGLCNCAERTALFKAVSEG------DKEFVAIAIVADTK 89 (141)
T ss_dssp CEEEEEEETTCCEEEEECBCCSSGGGCBCHHHHHHHHHHHTT------CCCEEEEEEEESCS
T ss_pred cEEEEEEeCCCCEEEeeccccCCCCcccCHHHHHHHHHHHCC------CCceEEEEEEeCCC
Confidence 699998844434433322 23334789999999998642 12467788888764
No 31
>2b3j_A TRNA adenosine deaminase; mixed alpha-beta, protein-RNA complex, RNA stem-loop, hydrol complex; HET: P5P; 2.00A {Staphylococcus aureus subsp} SCOP: c.97.1.2
Probab=37.99 E-value=36 Score=26.02 Aligned_cols=52 Identities=19% Similarity=0.053 Sum_probs=31.8
Q ss_pred CCcceeeeeCCCcceeeecchh----hhhhhHHHHHHHHHHHHHHHhhhhhhccCceEEec
Q psy4359 27 DSSVSAAFWSPDFSFKVKLNPL----LSICNAELMAILYAVYFILANCLSEARNSSFLLCT 83 (220)
Q Consensus 27 ~~~~G~ai~~~~~~~~~~l~~~----~si~~AEl~AI~~AL~~~~~~~~~~~~~~~~~I~s 83 (220)
+..||+.++..+..+..+.... ...--||..||..|.+..... .....++++
T Consensus 26 ~~pVGAviv~~g~Ii~~G~N~~~~~~~~~~HAE~~Ai~~a~~~~~~~-----~l~~~tlyv 81 (159)
T 2b3j_A 26 EVPIGAIITKDDEVIARAHNLRETLQQPTAHAEHIAIERAAKVLGSW-----RLEGCTLYV 81 (159)
T ss_dssp SCCCEEEEEETTEEEEEEECCHHHHTCTTCCHHHHHHHHHHHHHTSS-----CCTTEEEEE
T ss_pred CCCEEEEEEECCEEEEEEECCCCCCCCCccCHHHHHHHHHHHHcCCC-----CcceeEEEE
Confidence 4568999886444433333322 234679999999987754322 345667765
No 32
>1uwz_A Cytidine deaminase; CDD, tetramer, zinc binding, pyrimidine metabolism, salvage, hydrolase; HET: THU; 1.99A {Bacillus subtilis} SCOP: c.97.1.1 PDB: 1ux0_A* 1jtk_A* 1ux1_A*
Probab=36.81 E-value=35 Score=25.51 Aligned_cols=52 Identities=19% Similarity=0.033 Sum_probs=32.9
Q ss_pred cceeeeeCCCcceeeec----chhhhhhhHHHHHHHHHHHHHHHhhhhhhccCceEEeccch
Q psy4359 29 SVSAAFWSPDFSFKVKL----NPLLSICNAELMAILYAVYFILANCLSEARNSSFLLCTDSL 86 (220)
Q Consensus 29 ~~G~ai~~~~~~~~~~l----~~~~si~~AEl~AI~~AL~~~~~~~~~~~~~~~~~I~sDS~ 86 (220)
.||++++..+..+..|- ..+.....||..||..|... -. .....+.|.+|..
T Consensus 25 ~VGAal~~~dG~i~~G~Nvena~~~~t~cAE~~Ai~~A~~~-G~-----~~~~~~~l~~~~~ 80 (136)
T 1uwz_A 25 QVGAALLTKDGKVYRGCNIENAAYSMCNCAEATALFKAVSE-GD-----TEFQMLAVAADTP 80 (136)
T ss_dssp CEEEEEEETTSCEEEEECBCCSSGGGCBCHHHHHHHHHHHH-TC-----CCEEEEEEEESCS
T ss_pred CEEEEEEeCCCeEEEEeCcccCCCCCccCHHHHHHHHHHHC-CC-----CCeEEEEEEeCCC
Confidence 69999874333333222 23334578999999999875 11 2467788887754
No 33
>3adl_A RISC-loading complex subunit tarbp2; TRBP2, miRNA processing, gene regulation-RNA complex; 2.20A {Homo sapiens}
Probab=35.60 E-value=85 Score=21.46 Aligned_cols=65 Identities=11% Similarity=0.014 Sum_probs=39.7
Q ss_pred cchhHHHHhhhCCCceeee----ecCCCCCCcceeeeeCCCcceeeecchhhhhhhHHHHHHHHHHHHHHHh
Q psy4359 2 IKSSFLEIVSKYPQSTKIY----TDASKNDSSVSAAFWSPDFSFKVKLNPLLSICNAELMAILYAVYFILAN 69 (220)
Q Consensus 2 ~~~~f~~i~~~~~~~~~Iy----TDgSk~~~~~G~ai~~~~~~~~~~l~~~~si~~AEl~AI~~AL~~~~~~ 69 (220)
|++.+.|+.++..-....| ..|-......-+.|+.++. ++.....|-=.||..|...||+.+...
T Consensus 17 ~Ks~LqE~~Q~~~~~~P~Y~~~~~~Gp~H~~~F~~~v~v~g~---~~~G~G~SKK~Aeq~AA~~AL~~L~~~ 85 (88)
T 3adl_A 17 EVGALQELVVQKGWRLPEYTVTQESGPAHRKEFTMTCRVERF---IEIGSGTSKKLAKRNAAAKMLLRVHTV 85 (88)
T ss_dssp HHHHHHHHHHHTTCCCCEEEEEEEESCTTSCEEEEEEEETTE---EEEEEESSHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHcCCCCCEEEEEEeECCCCCCeEEEEEEECCE---EEEEeeCCHHHHHHHHHHHHHHHHHcc
Confidence 5677788766444333334 3444333334444444442 455566778899999999999987653
No 34
>2z3g_A Blasticidin-S deaminase; hydrolase, cytidine deaminase family, zinc, tetramer; HET: TRE; 1.50A {Aspergillus terreus} SCOP: c.97.1.1 PDB: 1wn6_A* 1wn5_A* 2z3h_A* 2z3j_A 2z3i_A*
Probab=33.80 E-value=35 Score=25.31 Aligned_cols=53 Identities=19% Similarity=0.013 Sum_probs=33.2
Q ss_pred CcceeeeeCCCcceeee--cchhhhhhhHHHHHHHHHHHHHHHhhhhhhccCceEEeccch
Q psy4359 28 SSVSAAFWSPDFSFKVK--LNPLLSICNAELMAILYAVYFILANCLSEARNSSFLLCTDSL 86 (220)
Q Consensus 28 ~~~G~ai~~~~~~~~~~--l~~~~si~~AEl~AI~~AL~~~~~~~~~~~~~~~~~I~sDS~ 86 (220)
-.||+|++..+..+..+ ...+.....||..||..|+.. - ......+++.+|..
T Consensus 27 f~VGAal~~~dG~i~~G~NvE~~~~t~cAE~~Ai~~A~~~--G----~~~~~~i~vv~~~~ 81 (130)
T 2z3g_A 27 YSVASAALSSDGRIFTGVNVYHFTGGPCAELVVLGTAAAA--A----AGNLTCIVAIGNEN 81 (130)
T ss_dssp SCEEEEEEETTSCEEEEECCCCTTTCCCHHHHHHHHHHHT--T----CCCEEEEEEEETTT
T ss_pred CCEEEEEEecCCeEEEEeccccCCcccCHHHHHHHHHHHc--C----CCceEEEEEEECCC
Confidence 46999988443333322 222344578999999999874 1 12466777887643
No 35
>1z3a_A TRNA-specific adenosine deaminase; tRNA adenosine deaminase, dimer, zinc, metalloenzyme, structural genomics, PSI, protein structure initiative; 2.03A {Escherichia coli} SCOP: c.97.1.2 PDB: 3ocq_A
Probab=33.41 E-value=40 Score=26.07 Aligned_cols=52 Identities=17% Similarity=0.111 Sum_probs=30.4
Q ss_pred CCcceeeeeCCCcceeeecchhh----hhhhHHHHHHHHHHHHHHHhhhhhhccCceEEec
Q psy4359 27 DSSVSAAFWSPDFSFKVKLNPLL----SICNAELMAILYAVYFILANCLSEARNSSFLLCT 83 (220)
Q Consensus 27 ~~~~G~ai~~~~~~~~~~l~~~~----si~~AEl~AI~~AL~~~~~~~~~~~~~~~~~I~s 83 (220)
+..||+.|+..+..+..+..... ..--||..||..|.+..... .....++++
T Consensus 28 ~~pVGAviV~~g~Ii~~G~N~~~~~~d~t~HAE~~Ai~~a~~~~~~~-----~l~~~tlYv 83 (168)
T 1z3a_A 28 EVPVGAVLVHNNRVIGEGWNRPIGRHDPTAHAEIMALRQGGLVMQNY-----RLIDATLYV 83 (168)
T ss_dssp SCCCEEEEEETTEEEEEEECCHHHHTCTTCCHHHHHHHHHHHHHTSS-----CCTTCEEEE
T ss_pred CCcEEEEEEECCEEEEEEEcccccCCCcchhHHHHHHHHHHHHcCCC-----cccccEEEE
Confidence 34699998854444433333222 23679999999987764322 234455554
No 36
>1uhz_A Staufen (RNA binding protein) homolog 2; DSRM, staufen homolog 2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.50.1.1
Probab=33.18 E-value=98 Score=21.13 Aligned_cols=64 Identities=9% Similarity=-0.142 Sum_probs=39.6
Q ss_pred cchhHHHHhhhCCCceeeee----cCCCCCCcceeeeeCCCcceeeecchhhhhhhHHHHHHHHHHHHHHH
Q psy4359 2 IKSSFLEIVSKYPQSTKIYT----DASKNDSSVSAAFWSPDFSFKVKLNPLLSICNAELMAILYAVYFILA 68 (220)
Q Consensus 2 ~~~~f~~i~~~~~~~~~IyT----DgSk~~~~~G~ai~~~~~~~~~~l~~~~si~~AEl~AI~~AL~~~~~ 68 (220)
|++.+.|+.++.......|. .|-..+...-+.|+.++. ++.....|-=.||..|...||+.+..
T Consensus 8 ~Kt~LqE~~Q~~~~~~P~Y~~~~~~Gp~H~~~F~~~v~v~g~---~~~G~G~SKK~Aeq~AA~~AL~~L~~ 75 (89)
T 1uhz_A 8 PISRLAQIQQARKEKEPDYILLSERGMPRRREFVMQVKVGNE---VATGTGPNKKIAKKNAAEAMLLQLGY 75 (89)
T ss_dssp HHHHHHHHHHHTTSCCCEEEEEEEESCSTTCEEEEEEEETTE---EEEEEESSHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHhCCCCCeEEEEEeECCCCCCeEEEEEEECCE---EEEEeeCCHHHHHHHHHHHHHHHHhc
Confidence 56778887665444444443 444333334444443442 45555678889999999999998753
No 37
>3oj6_A Blasticidin-S deaminase; ssgcid, seattle structural genomics for infectious disease, hydrolase; 1.70A {Coccidioides immitis}
Probab=31.79 E-value=38 Score=26.24 Aligned_cols=36 Identities=25% Similarity=0.022 Sum_probs=23.3
Q ss_pred cceeeeeCCCcceee--ecchhhhhhhHHHHHHHHHHH
Q psy4359 29 SVSAAFWSPDFSFKV--KLNPLLSICNAELMAILYAVY 64 (220)
Q Consensus 29 ~~G~ai~~~~~~~~~--~l~~~~si~~AEl~AI~~AL~ 64 (220)
.||+|+...+..+.. ....+..-..||..||..|+.
T Consensus 52 ~VGAAll~~dG~i~tG~NVEn~~~~lCAEr~Ai~~Avs 89 (158)
T 3oj6_A 52 SVASAAISDDGRVFSGVNVYHFNGGPCAELVVLGVAAA 89 (158)
T ss_dssp CEEEEEEETTSCEEEEECCCCTTTCCCHHHHHHHHHHH
T ss_pred cEEEEEEeCCCCEEEEEccccCCccccHHHHHHHHHHH
Confidence 699998754443332 222233346899999999985
No 38
>3dh1_A TRNA-specific adenosine deaminase 2; zinc-binding protein, TRA tRNA processing, hydrolase, structural genomics, structural consortium, SGC; 2.80A {Homo sapiens}
Probab=31.10 E-value=75 Score=25.07 Aligned_cols=42 Identities=14% Similarity=0.008 Sum_probs=28.4
Q ss_pred CCcceeeeeCCCcceeeecch----hhhhhhHHHHHHHHHHHHHHH
Q psy4359 27 DSSVSAAFWSPDFSFKVKLNP----LLSICNAELMAILYAVYFILA 68 (220)
Q Consensus 27 ~~~~G~ai~~~~~~~~~~l~~----~~si~~AEl~AI~~AL~~~~~ 68 (220)
+..||+.|+..+..+..+... ....--||..||..|.+...+
T Consensus 45 ~~pVGAVIV~~g~IIa~G~N~~~~~~~~t~HAEi~AI~~a~~~~~~ 90 (189)
T 3dh1_A 45 EVPVGCLMVYNNEVVGKGRNEVNQTKNATRHAEMVAIDQVLDWCRQ 90 (189)
T ss_dssp SCCCEEEEEETTEEEEEEECCHHHHTCTTCCHHHHHHHHHHHHHHH
T ss_pred CCCEEEEEEECCEEEEEEeCCCCccCCCcCcHHHHHHHHHHHHHhh
Confidence 456998888655544444332 345577999999999886543
No 39
>3b8f_A Putative blasticidin S deaminase; cytidine deaminase, structural genomics, MCSG, protein structure initiative; 1.90A {Bacillus anthracis}
Probab=30.67 E-value=32 Score=25.96 Aligned_cols=56 Identities=21% Similarity=0.095 Sum_probs=33.3
Q ss_pred eecCCCCCCcceeeeeCCCcceeee----cchhhhhhhHHHHHHHHHHHHHHHhhhhhhccCceEEeccc
Q psy4359 20 YTDASKNDSSVSAAFWSPDFSFKVK----LNPLLSICNAELMAILYAVYFILANCLSEARNSSFLLCTDS 85 (220)
Q Consensus 20 yTDgSk~~~~~G~ai~~~~~~~~~~----l~~~~si~~AEl~AI~~AL~~~~~~~~~~~~~~~~~I~sDS 85 (220)
|.-+| .||+|++..+..+..| -..+.....||..||..|...- ......+++.+|.
T Consensus 19 yaPyS----~VGAAl~~~dG~i~~G~NvEnas~~~~lcAEr~Ai~~a~~~G------~~~~~~~~v~~~~ 78 (142)
T 3b8f_A 19 YPNDW----GGAAAIRVEDGTIYTSVAPDVINASTELCMETGAILEAHKFQ------KKVTHSICLAREN 78 (142)
T ss_dssp CSSSC----EEEEEEEETTSCEEEECCCCCSSGGGCCCTTHHHHHHHHHHT------CCEEEEEEEEESS
T ss_pred CCCCC----CEEEEEEeCCCcEEEEECcccccCCcccCHHHHHHHHHHHCC------CCcEEEEEEEecC
Confidence 55556 8999987433333322 2233345789999999998741 1134556666554
No 40
>2cpn_A TAR RNA-binding protein 2; double-stranded RNA binding domain, DSRBD, DSRM., structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.50.1.1
Probab=28.73 E-value=93 Score=21.25 Aligned_cols=64 Identities=11% Similarity=0.025 Sum_probs=39.1
Q ss_pred cchhHHHHhhhCCCceeee----ecCCCCCCcceeeeeCCCcceeeecchhhhhhhHHHHHHHHHHHHHHH
Q psy4359 2 IKSSFLEIVSKYPQSTKIY----TDASKNDSSVSAAFWSPDFSFKVKLNPLLSICNAELMAILYAVYFILA 68 (220)
Q Consensus 2 ~~~~f~~i~~~~~~~~~Iy----TDgSk~~~~~G~ai~~~~~~~~~~l~~~~si~~AEl~AI~~AL~~~~~ 68 (220)
|++.+.|+.++.......| .+|-......-+.|+.++. ++.....|-=.||..|...||+.+..
T Consensus 18 ~Kt~LqE~~Qk~~~~~P~Y~~~~~~Gp~h~~~F~~~v~i~g~---~~~G~G~SKK~Aeq~AA~~AL~~L~~ 85 (89)
T 2cpn_A 18 PVGALQELVVQKGWRLPEYTVTQESGPAHRKEFTMTCRVERF---IEIGSGTSKKLAKRNAAAKMLLRVSG 85 (89)
T ss_dssp HHHHHHHHHHHHTCCCCEEEEEEEECCSSSCEEEEEEEETTE---EEEEEESSHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHcCCCCCeEEEEeeECCCCCCeEEEEEEECCE---EEEeeeCCHHHHHHHHHHHHHHHHHh
Confidence 4667788755433333333 3454443334444444443 44555678889999999999998754
No 41
>1ekz_A DSRBDIII, maternal effect protein (staufen); structure, protein/RNA, protein DSRBD, RNA hairpin; NMR {Drosophila melanogaster} SCOP: d.50.1.1 PDB: 1stu_A
Probab=26.17 E-value=1e+02 Score=20.08 Aligned_cols=62 Identities=11% Similarity=-0.123 Sum_probs=37.2
Q ss_pred cchhHHHHhhhCCCceeeee----cCCCCCCcceeeeeCCCcceeeecchhhhhhhHHHHHHHHHHHHHH
Q psy4359 2 IKSSFLEIVSKYPQSTKIYT----DASKNDSSVSAAFWSPDFSFKVKLNPLLSICNAELMAILYAVYFIL 67 (220)
Q Consensus 2 ~~~~f~~i~~~~~~~~~IyT----DgSk~~~~~G~ai~~~~~~~~~~l~~~~si~~AEl~AI~~AL~~~~ 67 (220)
|++...|+.++.... ..|. .|-..+...-+.|+.++ .++.....|-=.||..|...||+.+.
T Consensus 9 ~ks~LqE~~q~~~~~-p~Y~~~~~~Gp~h~~~F~~~v~i~~---~~~~G~G~sKK~Aeq~AA~~aL~~L~ 74 (76)
T 1ekz_A 9 PISQVHEIGIKRNMT-VHFKVLREEGPAHMKNFITACIVGS---IVTEGEGNGKKVSKKRAAEKMLVELQ 74 (76)
T ss_dssp HHHHHHHHHHHTTCC-CEEEESSSCCSSSCSCSSEEEEETT---EEEEECCCSTTSSSHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCC-CEEEEEEeECCCCCCcEEEEEEECC---EEEEEeeCCHHHHHHHHHHHHHHHHh
Confidence 567778876644444 4554 33322223334444344 33445567888999999999998764
No 42
>1x48_A Interferon-induced, double-stranded RNA- activated protein kinase; structure genomics, DSRM domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.50.1.1
Probab=25.30 E-value=1.6e+02 Score=19.91 Aligned_cols=65 Identities=12% Similarity=-0.051 Sum_probs=40.5
Q ss_pred cchhHHHHhhhCCCceeeeecCCCCC-Cc--ceeeeeCCCcceeeecchhhhhhhHHHHHHHHHHHHHHHh
Q psy4359 2 IKSSFLEIVSKYPQSTKIYTDASKND-SS--VSAAFWSPDFSFKVKLNPLLSICNAELMAILYAVYFILAN 69 (220)
Q Consensus 2 ~~~~f~~i~~~~~~~~~IyTDgSk~~-~~--~G~ai~~~~~~~~~~l~~~~si~~AEl~AI~~AL~~~~~~ 69 (220)
|++.+.|+.++....+ .|.+-++-. .. .-+.|+.++. .++.....|-=.||..|...||+.+...
T Consensus 8 ~Kt~LqE~~Q~~~~~~-~Y~~~~Gp~H~~~~F~~~v~v~g~--~~~~G~G~SKK~Aeq~AA~~AL~~L~~~ 75 (88)
T 1x48_A 8 YIGLVNSFAQKKKLSV-NYEQCEPNSELPQRFICKCKIGQT--MYGTGSGVTKQEAKQLAAKEAYQKLLKS 75 (88)
T ss_dssp HHHHHHHHHHHTTCCE-EEEECCCSSSSSCCEEEEEEESSC--EEEEEEESSHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHcCCCC-eeEEeeCCCCCCceEEEEEEECCE--EEEEeecCCHHHHHHHHHHHHHHHHHhc
Confidence 5677888766655566 887222211 11 2233444442 3344456788899999999999998654
No 43
>2khx_A Ribonuclease 3; drosha, RNA binding domain, hydrolase, gene regulation, NUCL protein, gene regulation,nuclear protein; NMR {Homo sapiens}
Probab=24.80 E-value=1.1e+02 Score=20.59 Aligned_cols=64 Identities=16% Similarity=0.074 Sum_probs=37.7
Q ss_pred cchhHHHHhhhC-----CCceeeee----cCCCCCCcceeeeeCCCcceeeecchhhhhhhHHHHHHHHHHHHHH
Q psy4359 2 IKSSFLEIVSKY-----PQSTKIYT----DASKNDSSVSAAFWSPDFSFKVKLNPLLSICNAELMAILYAVYFIL 67 (220)
Q Consensus 2 ~~~~f~~i~~~~-----~~~~~IyT----DgSk~~~~~G~ai~~~~~~~~~~l~~~~si~~AEl~AI~~AL~~~~ 67 (220)
|++.+.|+.++. ......|. .|...+...-+.|+.++ ..++.....|-=.||..|...||+.+.
T Consensus 3 ~Kt~LQE~~Q~~~~~~~~~~~p~Y~~~~~~Gp~H~~~F~v~V~v~g--~~~~~G~G~SKK~AEq~AA~~AL~~L~ 75 (85)
T 2khx_A 3 PKSQLQQCCLTLRTEGKEPDIPLYKTLQTVGPSHARTYTVAVYFKG--ERIGCGKGPSIQQAEMGAAMDALEKYN 75 (85)
T ss_dssp SCHHHHHHHHHCCCSSSCCCCCCEEECCCCCSSSCCCEEEEEEETT--EECCCEEESSHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHhhhhhhcCCCCCceEEEEEeECCCCCCcEEEEEEECC--EEEEEEeeCCHHHHHHHHHHHHHHHHh
Confidence 577788876642 22233443 34333333444444444 234455567889999999999998653
No 44
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=23.98 E-value=20 Score=25.52 Aligned_cols=15 Identities=33% Similarity=0.767 Sum_probs=10.6
Q ss_pred CCccceecccccHHH
Q psy4359 167 PPECEICSCNLTVKH 181 (220)
Q Consensus 167 ~p~C~~Cg~~eTv~H 181 (220)
...||.||.+.+..|
T Consensus 47 g~~CPvCgs~l~~~~ 61 (112)
T 1l8d_A 47 KGKCPVCGRELTDEH 61 (112)
T ss_dssp SEECTTTCCEECHHH
T ss_pred CCCCCCCCCcCCHHH
Confidence 456999997766543
No 45
>1r5t_A Cytidine deaminase; zinc dependent deaminase, RNA editing, apobec-1 related protein, hydrolase; 2.00A {Saccharomyces cerevisiae} SCOP: c.97.1.1
Probab=23.92 E-value=74 Score=23.85 Aligned_cols=54 Identities=15% Similarity=0.081 Sum_probs=34.1
Q ss_pred CCcceeeeeCCCcceeeecc----hhhhhhhHHHHHHHHHHHHHHHhhhhhhc-cCceEEeccch
Q psy4359 27 DSSVSAAFWSPDFSFKVKLN----PLLSICNAELMAILYAVYFILANCLSEAR-NSSFLLCTDSL 86 (220)
Q Consensus 27 ~~~~G~ai~~~~~~~~~~l~----~~~si~~AEl~AI~~AL~~~~~~~~~~~~-~~~~~I~sDS~ 86 (220)
+-.||+|+...+..+..|-. .+..-..||..||..|+..-. .. ...+.|.+|..
T Consensus 31 ~f~VGAAl~~~dG~i~~G~NvEnasy~~t~cAEr~Ai~~a~~~G~------~~~i~~i~vv~~~~ 89 (142)
T 1r5t_A 31 HFRVGCSILTNNDVIFTGANVENASYSNCICAERSAMIQVLMAGH------RSGWKCMVICGDSE 89 (142)
T ss_dssp CCCEEEEEECTTSCEEEEECBCCSSGGGCBCHHHHHHHHHHHTTC------CSCCCEEEEEESCS
T ss_pred CCCEEEEEEeCCCCEEEEEeecccCCCCCcCHHHHHHHHHHHcCC------CCceEEEEEEeCCC
Confidence 34799998854444443322 233347899999999986421 13 66788888754
No 46
>2dix_A Interferon-inducible double stranded RNA- dependent protein kinase activator A; structure genomics, DSRM domain, hypothetical protein PRKRA; NMR {Homo sapiens} SCOP: d.50.1.1
Probab=23.33 E-value=1.7e+02 Score=19.51 Aligned_cols=64 Identities=17% Similarity=-0.021 Sum_probs=39.1
Q ss_pred cchhHHHHhhhCCCceeeee----cCCCCCCcceeeeeCCCcceeeecchhhhhhhHHHHHHHHHHHHHHHh
Q psy4359 2 IKSSFLEIVSKYPQSTKIYT----DASKNDSSVSAAFWSPDFSFKVKLNPLLSICNAELMAILYAVYFILAN 69 (220)
Q Consensus 2 ~~~~f~~i~~~~~~~~~IyT----DgSk~~~~~G~ai~~~~~~~~~~l~~~~si~~AEl~AI~~AL~~~~~~ 69 (220)
|++...|+.++.. ....|. .|-..+...-+.|+.++ .++.....|-=.||..|...||+.+...
T Consensus 10 ~Ks~LqE~~q~~~-~~p~Y~~~~~~Gp~h~~~F~~~v~v~~---~~~~G~G~SKK~Aeq~AA~~aL~~L~~~ 77 (84)
T 2dix_A 10 PIQVLHEYGMKTK-NIPVYECERSDVQIHVPTFTFRVTVGD---ITCTGEGTSKKLAKHRAAEAAINILKAN 77 (84)
T ss_dssp HHHHHHHHHHHTT-CCCEEEEEEEECSSSSCEEEEEEEETT---EEEEECSSCTTHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcC-CCCeEEEEEeECCCCCCeEEEEEEECC---EEEEeeeCCHHHHHHHHHHHHHHHHhcc
Confidence 4677788766444 234453 34333333334444344 2344456778899999999999998654
No 47
>2f6m_B Vacuolar protein sorting-associated protein VPS28; endosomes, trafficking complex, vacuole protei sorting, ESCRT protein complexes; HET: DDQ; 2.10A {Saccharomyces cerevisiae} SCOP: a.2.17.2 PDB: 2f66_B
Probab=23.21 E-value=51 Score=23.96 Aligned_cols=18 Identities=11% Similarity=0.170 Sum_probs=16.0
Q ss_pred hhHHHHHHHHHHHHHHHh
Q psy4359 52 CNAELMAILYAVYFILAN 69 (220)
Q Consensus 52 ~~AEl~AI~~AL~~~~~~ 69 (220)
.-||+.||+.||+.+.+.
T Consensus 30 ~LAelYSII~tle~LEkA 47 (109)
T 2f6m_B 30 TLSEIYSIVITLDHVEKA 47 (109)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHH
Confidence 469999999999999884
No 48
>1p6o_A Cytosine deaminase; hydrolase, dimer, inhibitor bound; 1.14A {Saccharomyces cerevisiae} SCOP: c.97.1.2 PDB: 1ox7_A 1rb7_A 1ysd_A 1ysb_A 2o3k_A 1uaq_A
Probab=23.14 E-value=82 Score=24.03 Aligned_cols=39 Identities=5% Similarity=-0.038 Sum_probs=24.2
Q ss_pred CCcceeeee--CCCcceeeecchh----hhhhhHHHHHHHHHHHH
Q psy4359 27 DSSVSAAFW--SPDFSFKVKLNPL----LSICNAELMAILYAVYF 65 (220)
Q Consensus 27 ~~~~G~ai~--~~~~~~~~~l~~~----~si~~AEl~AI~~AL~~ 65 (220)
+..||+.++ ..+..+..+.... ...--||..||..|.+.
T Consensus 33 ~~pVGAviVd~~~g~Ii~~G~N~~~~~~~~t~HAE~~Ai~~a~~~ 77 (161)
T 1p6o_A 33 GVPIGGCLINNKDGSVLGRGHNMRFQKGSATLHGEISTLENCGRL 77 (161)
T ss_dssp SCCCEEEEEETTTCCEEEEEECCHHHHTCSSCCHHHHHHHHHCSC
T ss_pred CCCEEEEEEEecCCEEEEEEECCCCCCCCcccCHHHHHHHHHHHh
Confidence 456999988 4444333333322 22356999999998653
No 49
>2p22_B Vacuolar protein sorting-associated protein 28; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae}
Probab=22.92 E-value=52 Score=24.30 Aligned_cols=18 Identities=11% Similarity=0.170 Sum_probs=16.1
Q ss_pred hhHHHHHHHHHHHHHHHh
Q psy4359 52 CNAELMAILYAVYFILAN 69 (220)
Q Consensus 52 ~~AEl~AI~~AL~~~~~~ 69 (220)
.-||+.||+.||+.+.+.
T Consensus 39 ~LAeLYSII~tle~LEKA 56 (118)
T 2p22_B 39 TLSEIYSIVITLDHVEKA 56 (118)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHH
Confidence 459999999999999885
No 50
>3adg_A F21M12.9 protein; HYL1, miRNA processing mechanism, RNA binding protein, gene regulation; 1.70A {Arabidopsis thaliana} PDB: 3adi_A
Probab=21.65 E-value=1.7e+02 Score=18.80 Aligned_cols=63 Identities=19% Similarity=0.131 Sum_probs=37.6
Q ss_pred cchhHHHHhhhCCCc---eeeeecCCCCCCcceeeeeCCCcceeeecchh-hhhhhHHHHHHHHHHHHH
Q psy4359 2 IKSSFLEIVSKYPQS---TKIYTDASKNDSSVSAAFWSPDFSFKVKLNPL-LSICNAELMAILYAVYFI 66 (220)
Q Consensus 2 ~~~~f~~i~~~~~~~---~~IyTDgSk~~~~~G~ai~~~~~~~~~~l~~~-~si~~AEl~AI~~AL~~~ 66 (220)
|++.+.|+.++.... +.+..+|-......-+.|..++ ..++.... .|-=.||-.|...||+.+
T Consensus 5 ~Kt~LqE~~q~~~~~~p~Y~~~~~Gp~h~~~F~~~v~v~g--~~~~~G~G~~sKK~Aeq~AA~~al~~L 71 (73)
T 3adg_A 5 FKSRLQEYAQKYKLPTPVYEIVKEGPSHKSLFQSTVILDG--VRYNSLPGFFNRKAAEQSAAEVALREL 71 (73)
T ss_dssp HHHHHHHHHHHTTCCCCEEEEEEESSTTSCEEEEEEEETT--EEEECCSCBSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCCEEEEEeECCCCCCeEEEEEEECC--EEEEeeeccCCHHHHHHHHHHHHHHHh
Confidence 567788875544333 3333344333333334444344 23555555 688899999999999876
No 51
>1x47_A DGCR8 protein; structural genomics, DSRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.50.1.1
Probab=21.25 E-value=1.9e+02 Score=20.00 Aligned_cols=65 Identities=9% Similarity=0.013 Sum_probs=36.9
Q ss_pred cchhHHHHhhhCCCceeeee--cCCCCCCcceeeeeCCCcceeeecchhhhhhhHHHHHHHHHHHHHHH
Q psy4359 2 IKSSFLEIVSKYPQSTKIYT--DASKNDSSVSAAFWSPDFSFKVKLNPLLSICNAELMAILYAVYFILA 68 (220)
Q Consensus 2 ~~~~f~~i~~~~~~~~~IyT--DgSk~~~~~G~ai~~~~~~~~~~l~~~~si~~AEl~AI~~AL~~~~~ 68 (220)
|++...|+.++.......|. +-++.....-+.|+.++. .++.....|-=.||..|...||+.+..
T Consensus 18 ~Kt~LqE~~Q~~~~~~P~Y~~~~~~Gp~~~F~~~V~v~g~--~~~~G~G~SKK~Aeq~AA~~AL~~L~~ 84 (98)
T 1x47_A 18 EVCILHEYMQRVLKVRPVYNFFECENPSEPFGASVTIDGV--TYGSGTASSKKLAKNKAARATLEILIP 84 (98)
T ss_dssp HHHHHHHHHHHHTCSCCEEEEEECSSSSCCEEEEEEETTE--EEEEEEESSHHHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHcCCCCCeEEEEEeECCCCcEEEEEEECCE--EEEEeeeCCHHHHHHHHHHHHHHHHHh
Confidence 45677776554333333342 222222223333443442 344455677889999999999998754
No 52
>2qgp_A HNH endonuclease; Q39X46, GMR87, X-RAY, NESG, structural genomics, PSI-2, protein structure initiative; 2.60A {Geobacter metallireducens gs-15}
Probab=21.20 E-value=7.8 Score=28.15 Aligned_cols=19 Identities=32% Similarity=0.520 Sum_probs=14.5
Q ss_pred CCCCccceeccc-----ccHHHHH
Q psy4359 165 EQPPECEICSCN-----LTVKHLL 183 (220)
Q Consensus 165 ~~~p~C~~Cg~~-----eTv~HiL 183 (220)
.+...|++||.. .+|+||+
T Consensus 33 r~~~~C~yCg~~~~~~~~~vDHIi 56 (112)
T 2qgp_A 33 IARGICHYCGEIFPPEELTMDHLV 56 (112)
T ss_dssp HHHTBCTTTCCBCCGGGEEEEESS
T ss_pred HcCCcCCCCCCcCCCCCcEEEEEe
Confidence 356799999954 4788887
No 53
>3j20_M 30S ribosomal protein S11P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=20.42 E-value=1.6e+02 Score=22.07 Aligned_cols=75 Identities=17% Similarity=0.038 Sum_probs=42.4
Q ss_pred HhhhCCCceeeeecCCCCCC--cceeeeeCCCcceeeecchhhhhhhHHHHHHHHHHHHHHHhhhhhhccCceEEecc--
Q psy4359 9 IVSKYPQSTKIYTDASKNDS--SVSAAFWSPDFSFKVKLNPLLSICNAELMAILYAVYFILANCLSEARNSSFLLCTD-- 84 (220)
Q Consensus 9 i~~~~~~~~~IyTDgSk~~~--~~G~ai~~~~~~~~~~l~~~~si~~AEl~AI~~AL~~~~~~~~~~~~~~~~~I~sD-- 84 (220)
|...+++.++-.||-++.+- .+.++.. .++-....|-|.|.+.|...|-+ +.+. ..+.+-|.--
T Consensus 19 I~asfNNTivtiTD~~G~~~i~~~S~G~~------gfkg~~ksTp~AA~~aa~~~~~~-a~e~-----Gi~~v~V~vkG~ 86 (137)
T 3j20_M 19 IYSSFNNTIIHITDITGAETISRWSGGMV------VKADRDEPSPYAAMLAARRAAEE-ALEK-----GIVGVHIRVRAP 86 (137)
T ss_dssp EEECSSCEEEEEEESSSCSEEEEEEGGGT------CSCTTTSSSHHHHHHHHHHHHHH-HHHH-----TEEEEEEEEECC
T ss_pred EEcCCCCEEEEEEcCCCCEEEEEEcccee------eecCCccCCHHHHHHHHHHHHHH-HHHc-----CCeEEEEEEECC
Confidence 45567777777888776421 1111111 23334567778888877544444 4443 4555555543
Q ss_pred -----------chHHHHhhhhh
Q psy4359 85 -----------SLSALQSLQDI 95 (220)
Q Consensus 85 -----------S~sal~ai~~~ 95 (220)
-++||++|+..
T Consensus 87 gg~~~~~pG~GresairaL~~~ 108 (137)
T 3j20_M 87 GGSKSKTPGPGAQAAIRALARA 108 (137)
T ss_dssp CSSSCCSCCTHHHHHHHHHHHH
T ss_pred CCCCCcCCCCcHHHHHHHHHhC
Confidence 37788888765
No 54
>2caz_B Vacuolar protein sorting-associated protein VPS28; protein transport, ESCRT, MVB, multivesicular bodies, endosome, lysosome, PH domain, protein sorting; 3.6A {Saccharomyces cerevisiae} SCOP: a.2.17.2
Probab=20.25 E-value=61 Score=25.05 Aligned_cols=18 Identities=11% Similarity=0.170 Sum_probs=16.0
Q ss_pred hhHHHHHHHHHHHHHHHh
Q psy4359 52 CNAELMAILYAVYFILAN 69 (220)
Q Consensus 52 ~~AEl~AI~~AL~~~~~~ 69 (220)
.-||++||+.||+.+.+.
T Consensus 47 ~LAeLYSII~tLE~LEKA 64 (155)
T 2caz_B 47 TLSEIYSIVITLDHVEKA 64 (155)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 459999999999999885
Done!