RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy4359
         (220 letters)



>d2hgka1 a.29.17.1 (A:1-109) Hypothetical protein YqcC {Escherichia
           coli [TaxId: 562]}
          Length = 109

 Score = 26.7 bits (59), Expect = 1.0
 Identities = 9/31 (29%), Positives = 15/31 (48%)

Query: 73  EARNSSFLLCTDSLSALQSLQDIFSPNLHTL 103
              NS+     D++  L+ LQ +  P +H L
Sbjct: 32  HQFNSTQPFFMDTMEPLEWLQWVLIPRMHDL 62


>d2fzia1 c.71.1.1 (A:1-206) Dihydrofolate reductases, eukaryotic
           type {Fungus (Pneumocystis carinii) [TaxId: 4754]}
          Length = 206

 Score = 26.0 bits (56), Expect = 3.0
 Identities = 12/48 (25%), Positives = 16/48 (33%), Gaps = 6/48 (12%)

Query: 115 NYLIGNKLRLIKEENKPWHPPQTFSRRDQVTLTRLRIGHTNLTHVHLM 162
           +Y IG    L      PW   +  S   +VT            +V LM
Sbjct: 16  SYGIGRSNSL------PWKLKKEISYFKRVTSFVPTFDSFESMNVVLM 57


>d3b8oa1 d.58.60.1 (A:55-319) Lipopolysaccharide biosynthesis
           protein WzzE {Escherichia coli [TaxId: 562]}
          Length = 265

 Score = 24.6 bits (53), Expect = 10.0
 Identities = 9/35 (25%), Positives = 15/35 (42%), Gaps = 4/35 (11%)

Query: 79  FLLCTDSLSA----LQSLQDIFSPNLHTLRQIMSL 109
           FLL    L A    LQ++   F  +    R +++ 
Sbjct: 204 FLLGRPMLQARLENLQAVGPAFDLDYDQNRAMLNT 238


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.321    0.134    0.414 

Gapped
Lambda     K      H
   0.267   0.0567    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 806,839
Number of extensions: 36196
Number of successful extensions: 74
Number of sequences better than 10.0: 1
Number of HSP's gapped: 74
Number of HSP's successfully gapped: 6
Length of query: 220
Length of database: 2,407,596
Length adjustment: 82
Effective length of query: 138
Effective length of database: 1,281,736
Effective search space: 176879568
Effective search space used: 176879568
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (23.8 bits)