BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy4361
         (122 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3M1N|A Chain A, Crystal Structure Of Human Sonic Hedgehog N-Terminal
           Domain
 pdb|3M1N|B Chain B, Crystal Structure Of Human Sonic Hedgehog N-Terminal
           Domain
          Length = 175

 Score =  106 bits (265), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 51/78 (65%), Positives = 62/78 (79%), Gaps = 2/78 (2%)

Query: 34  GPGGKSGRRRYDRYKKITPLVYKQHVPNVSENTLTASGHSEGRISRDDKRFRDLIPNYNQ 93
           GPG   G+RR+   KK+TPL YKQ +PNV+E TL ASG  EG+ISR+ +RF++L PNYN 
Sbjct: 3   GPGRGFGKRRHP--KKLTPLAYKQFIPNVAEKTLGASGRYEGKISRNSERFKELTPNYNP 60

Query: 94  DIIFKDDEGTGADRLMTQ 111
           DIIFKD+E TGADRLMTQ
Sbjct: 61  DIIFKDEENTGADRLMTQ 78


>pdb|3D1M|A Chain A, Crystal Structure Of Sonic Hedgehog Bound To The Third
           Fniii Domain Of Cdo
 pdb|3D1M|B Chain B, Crystal Structure Of Sonic Hedgehog Bound To The Third
           Fniii Domain Of Cdo
          Length = 168

 Score =  105 bits (261), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 50/79 (63%), Positives = 62/79 (78%), Gaps = 2/79 (2%)

Query: 33  CGPGGKSGRRRYDRYKKITPLVYKQHVPNVSENTLTASGHSEGRISRDDKRFRDLIPNYN 92
            GPG   G+RR+   KK+TPL YKQ +PNV+E TL ASG  EG+I+R+ +RF++L PNYN
Sbjct: 4   SGPGRGFGKRRHP--KKLTPLAYKQFIPNVAEKTLGASGRYEGKITRNSERFKELTPNYN 61

Query: 93  QDIIFKDDEGTGADRLMTQ 111
            DIIFKD+E TGADRLMTQ
Sbjct: 62  PDIIFKDEENTGADRLMTQ 80


>pdb|3HO5|H Chain H, Crystal Structure Of Hedgehog-interacting Protein (hhip)
           And Sonic Hedgehog (shh) Complex
 pdb|3MXW|A Chain A, Crystal Structure Sonic Hedgehog Bound To The 5e1 Fab
           Fragment
          Length = 169

 Score =  102 bits (253), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 48/72 (66%), Positives = 59/72 (81%), Gaps = 2/72 (2%)

Query: 40  GRRRYDRYKKITPLVYKQHVPNVSENTLTASGHSEGRISRDDKRFRDLIPNYNQDIIFKD 99
           G+RR+   KK+TPL YKQ +PNV+E TL ASG  EG+ISR+ +RF++L PNYN DIIFKD
Sbjct: 3   GKRRHP--KKLTPLAYKQFIPNVAEKTLGASGRYEGKISRNSERFKELTPNYNPDIIFKD 60

Query: 100 DEGTGADRLMTQ 111
           +E TGADRLMTQ
Sbjct: 61  EENTGADRLMTQ 72


>pdb|1VHH|A Chain A, A Potential Catalytic Site Within The Amino-Terminal
           Signalling Domain Of Sonic Hedgehog
          Length = 162

 Score = 99.4 bits (246), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 44/64 (68%), Positives = 54/64 (84%)

Query: 48  KKITPLVYKQHVPNVSENTLTASGHSEGRISRDDKRFRDLIPNYNQDIIFKDDEGTGADR 107
           KK+TPL YKQ +PNV+E TL ASG  EG+I+R+ +RF++L PNYN DIIFKD+E TGADR
Sbjct: 5   KKLTPLAYKQFIPNVAEKTLGASGRYEGKITRNSERFKELTPNYNPDIIFKDEENTGADR 64

Query: 108 LMTQ 111
           LMTQ
Sbjct: 65  LMTQ 68


>pdb|3K7I|B Chain B, Crystal Structure Of The E131k Mutant Of The Indian
           Hedgehog N- Terminal Signalling Domain
          Length = 187

 Score = 99.0 bits (245), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 49/80 (61%), Positives = 57/80 (71%), Gaps = 1/80 (1%)

Query: 32  CCGPGGKSGRRRYDRYKKITPLVYKQHVPNVSENTLTASGHSEGRISRDDKRFRDLIPNY 91
            CGPG   G RR    +K+ PL YKQ  PNV E TL ASG  EG+I+R  +RF++L PNY
Sbjct: 12  SCGPGRVVGSRRRPP-RKLVPLAYKQFSPNVPEKTLGASGRYEGKIARSSERFKELTPNY 70

Query: 92  NQDIIFKDDEGTGADRLMTQ 111
           N DIIFKD+E TGADRLMTQ
Sbjct: 71  NPDIIFKDEENTGADRLMTQ 90


>pdb|3K7G|B Chain B, Crystal Structure Of The Indian Hedgehog N-Terminal
           Signalling Domain
          Length = 187

 Score = 99.0 bits (245), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 49/80 (61%), Positives = 57/80 (71%), Gaps = 1/80 (1%)

Query: 32  CCGPGGKSGRRRYDRYKKITPLVYKQHVPNVSENTLTASGHSEGRISRDDKRFRDLIPNY 91
            CGPG   G RR    +K+ PL YKQ  PNV E TL ASG  EG+I+R  +RF++L PNY
Sbjct: 12  SCGPGRVVGSRRRPP-RKLVPLAYKQFSPNVPEKTLGASGRYEGKIARSSERFKELTPNY 70

Query: 92  NQDIIFKDDEGTGADRLMTQ 111
           N DIIFKD+E TGADRLMTQ
Sbjct: 71  NPDIIFKDEENTGADRLMTQ 90


>pdb|3K7J|B Chain B, Crystal Structure Of The D100e Mutant Of The Indian
           Hedgehog N- Terminal Signalling Domain
          Length = 187

 Score = 97.8 bits (242), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 48/80 (60%), Positives = 57/80 (71%), Gaps = 1/80 (1%)

Query: 32  CCGPGGKSGRRRYDRYKKITPLVYKQHVPNVSENTLTASGHSEGRISRDDKRFRDLIPNY 91
            CGPG   G RR    +K+ PL YKQ  PNV E TL ASG  EG+I+R  +RF++L PNY
Sbjct: 12  SCGPGRVVGSRRRPP-RKLVPLAYKQFSPNVPEKTLGASGRYEGKIARSSERFKELTPNY 70

Query: 92  NQDIIFKDDEGTGADRLMTQ 111
           N DIIFKD+E TGA+RLMTQ
Sbjct: 71  NPDIIFKDEENTGAERLMTQ 90


>pdb|3K7H|B Chain B, Crystal Structure Of The E95k Mutant Of The Indian
           Hedgehog N-Terminal Signalling Domain
          Length = 187

 Score = 97.4 bits (241), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 48/80 (60%), Positives = 57/80 (71%), Gaps = 1/80 (1%)

Query: 32  CCGPGGKSGRRRYDRYKKITPLVYKQHVPNVSENTLTASGHSEGRISRDDKRFRDLIPNY 91
            CGPG   G RR    +K+ PL YKQ  PNV E TL ASG  EG+I+R  +RF++L PNY
Sbjct: 12  SCGPGRVVGSRRRPP-RKLVPLAYKQFSPNVPEKTLGASGRYEGKIARSSERFKELTPNY 70

Query: 92  NQDIIFKDDEGTGADRLMTQ 111
           N DIIFKD++ TGADRLMTQ
Sbjct: 71  NPDIIFKDEKNTGADRLMTQ 90


>pdb|2WG4|A Chain A, Crystal Structure Of The Complex Between Human Hedgehog-
           Interacting Protein Hip And Sonic Hedgehog Without
           Calcium
          Length = 155

 Score = 96.3 bits (238), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 42/62 (67%), Positives = 52/62 (83%)

Query: 50  ITPLVYKQHVPNVSENTLTASGHSEGRISRDDKRFRDLIPNYNQDIIFKDDEGTGADRLM 109
           +TPL YKQ +PNV+E TL ASG  EG+I+R+ +RF++L PNYN DIIFKD+E TGADRLM
Sbjct: 1   LTPLAYKQFIPNVAEKTLGASGRYEGKITRNSERFKELTPNYNPDIIFKDEENTGADRLM 60

Query: 110 TQ 111
           TQ
Sbjct: 61  TQ 62


>pdb|3N1R|A Chain A, Crystal Structure Of Shhn
          Length = 160

 Score = 95.9 bits (237), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 42/62 (67%), Positives = 52/62 (83%)

Query: 50  ITPLVYKQHVPNVSENTLTASGHSEGRISRDDKRFRDLIPNYNQDIIFKDDEGTGADRLM 109
           +TPL YKQ +PNV+E TL ASG  EG+I+R+ +RF++L PNYN DIIFKD+E TGADRLM
Sbjct: 5   LTPLAYKQFIPNVAEKTLGASGRYEGKITRNSERFKELTPNYNPDIIFKDEENTGADRLM 64

Query: 110 TQ 111
           TQ
Sbjct: 65  TQ 66


>pdb|2WFX|A Chain A, Crystal Structure Of The Complex Between Human Hedgehog-
           Interacting Protein Hip And Sonic Hedgehog In The
           Presence Of Calcium
          Length = 152

 Score = 95.9 bits (237), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 42/62 (67%), Positives = 52/62 (83%)

Query: 50  ITPLVYKQHVPNVSENTLTASGHSEGRISRDDKRFRDLIPNYNQDIIFKDDEGTGADRLM 109
           +TPL YKQ +PNV+E TL ASG  EG+I+R+ +RF++L PNYN DIIFKD+E TGADRLM
Sbjct: 1   LTPLAYKQFIPNVAEKTLGASGRYEGKITRNSERFKELTPNYNPDIIFKDEENTGADRLM 60

Query: 110 TQ 111
           TQ
Sbjct: 61  TQ 62


>pdb|3N1F|A Chain A, Crystal Structure Of Ihhn Bound To Cdofn3
 pdb|3N1F|B Chain B, Crystal Structure Of Ihhn Bound To Cdofn3
 pdb|3N1M|B Chain B, Crystal Structure Of Ihhn Bound To Bocfn3
 pdb|3N1O|A Chain A, Crystal Structure Of Ihhn
 pdb|3N1O|B Chain B, Crystal Structure Of Ihhn
 pdb|3N1O|C Chain C, Crystal Structure Of Ihhn
 pdb|3N1P|B Chain B, Crystal Structure Of Ihhn Bound To Bocfn3
          Length = 169

 Score = 95.5 bits (236), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 48/78 (61%), Positives = 56/78 (71%), Gaps = 1/78 (1%)

Query: 34  GPGGKSGRRRYDRYKKITPLVYKQHVPNVSENTLTASGHSEGRISRDDKRFRDLIPNYNQ 93
           GPG   G RR    +K+ PL YKQ  PNV E TL ASG  EG+I+R  +RF++L PNYN 
Sbjct: 5   GPGRVVGSRRRPP-RKLVPLAYKQFSPNVPEKTLGASGRYEGKIARSSERFKELTPNYNP 63

Query: 94  DIIFKDDEGTGADRLMTQ 111
           DIIFKD+E TGADRLMTQ
Sbjct: 64  DIIFKDEENTGADRLMTQ 81


>pdb|3N1G|B Chain B, Crystal Structure Of Dhhn Bound To Bocfn3
 pdb|3N1G|A Chain A, Crystal Structure Of Dhhn Bound To Bocfn3
 pdb|3N1Q|B Chain B, Crystal Structure Of Dhhn Bound To Cdofn3
 pdb|3N1Q|A Chain A, Crystal Structure Of Dhhn Bound To Cdofn3
 pdb|3N1Q|E Chain E, Crystal Structure Of Dhhn Bound To Cdofn3
          Length = 170

 Score = 95.5 bits (236), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 42/64 (65%), Positives = 53/64 (82%)

Query: 48  KKITPLVYKQHVPNVSENTLTASGHSEGRISRDDKRFRDLIPNYNQDIIFKDDEGTGADR 107
           K++ PL+YKQ VP V E TL ASG +EGR++R  +RFRDL+PNYN DIIFKD+E +GADR
Sbjct: 19  KQLVPLLYKQFVPGVPERTLGASGPAEGRVARGSERFRDLVPNYNPDIIFKDEENSGADR 78

Query: 108 LMTQ 111
           LMT+
Sbjct: 79  LMTE 82


>pdb|2WFQ|A Chain A, Crystal Structure Of The N-terminal Signalling Domain Of
           Human Dhh Without Calcium
 pdb|2WFR|A Chain A, Crystal Structure Of The N-Terminal Signalling Domain Of
           Human Dhh With Calcium
          Length = 165

 Score = 93.6 bits (231), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 41/63 (65%), Positives = 52/63 (82%)

Query: 49  KITPLVYKQHVPNVSENTLTASGHSEGRISRDDKRFRDLIPNYNQDIIFKDDEGTGADRL 108
           ++ PL+YKQ VP V E TL ASG +EGR++R  +RFRDL+PNYN DIIFKD+E +GADRL
Sbjct: 1   QLVPLLYKQFVPGVPERTLGASGPAEGRVARGSERFRDLVPNYNPDIIFKDEENSGADRL 60

Query: 109 MTQ 111
           MT+
Sbjct: 61  MTE 63


>pdb|2WG3|A Chain A, Crystal Structure Of The Complex Between Human Hedgehog-
           Interacting Protein Hip And Desert Hedgehog Without
           Calcium
 pdb|2WG3|B Chain B, Crystal Structure Of The Complex Between Human Hedgehog-
           Interacting Protein Hip And Desert Hedgehog Without
           Calcium
          Length = 164

 Score = 93.2 bits (230), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 41/62 (66%), Positives = 51/62 (82%)

Query: 50  ITPLVYKQHVPNVSENTLTASGHSEGRISRDDKRFRDLIPNYNQDIIFKDDEGTGADRLM 109
           + PL+YKQ VP V E TL ASG +EGR++R  +RFRDL+PNYN DIIFKD+E +GADRLM
Sbjct: 2   LVPLLYKQFVPGVPERTLGASGPAEGRVARGSERFRDLVPNYNPDIIFKDEENSGADRLM 61

Query: 110 TQ 111
           T+
Sbjct: 62  TE 63


>pdb|2IBG|E Chain E, Crystal Structure Of Hedgehog Bound To The Fniii Domains
           Of Ihog
 pdb|2IBG|F Chain F, Crystal Structure Of Hedgehog Bound To The Fniii Domains
           Of Ihog
 pdb|2IBG|G Chain G, Crystal Structure Of Hedgehog Bound To The Fniii Domains
           Of Ihog
 pdb|2IBG|H Chain H, Crystal Structure Of Hedgehog Bound To The Fniii Domains
           Of Ihog
          Length = 150

 Score = 85.9 bits (211), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 38/62 (61%), Positives = 51/62 (82%)

Query: 50  ITPLVYKQHVPNVSENTLTASGHSEGRISRDDKRFRDLIPNYNQDIIFKDDEGTGADRLM 109
           + PLV KQ +PN+SE T +ASG  EG I RD  +F+DL+PNYN+DI+F+D+EGTGADRLM
Sbjct: 1   LYPLVLKQTIPNLSEYTNSASGPLEGVIRRDSPKFKDLVPNYNRDILFRDEEGTGADRLM 60

Query: 110 TQ 111
           ++
Sbjct: 61  SK 62


>pdb|3ED6|A Chain A, 1.7 Angstrom Resolution Crystal Structure Of Betaine
           Aldehyde Dehydrogenase (Betb) From Staphylococcus Aureus
 pdb|3ED6|B Chain B, 1.7 Angstrom Resolution Crystal Structure Of Betaine
           Aldehyde Dehydrogenase (Betb) From Staphylococcus Aureus
 pdb|3FG0|A Chain A, 1.85 Angstrom Resolution Crystal Structure Of Betaine
           Aldehyde Dehydrogenase (Betb) From Staphylococcus Aureus
           (Idp00699) In Complex With Nad+
 pdb|3FG0|B Chain B, 1.85 Angstrom Resolution Crystal Structure Of Betaine
           Aldehyde Dehydrogenase (Betb) From Staphylococcus Aureus
           (Idp00699) In Complex With Nad+
 pdb|3FG0|C Chain C, 1.85 Angstrom Resolution Crystal Structure Of Betaine
           Aldehyde Dehydrogenase (Betb) From Staphylococcus Aureus
           (Idp00699) In Complex With Nad+
 pdb|3FG0|D Chain D, 1.85 Angstrom Resolution Crystal Structure Of Betaine
           Aldehyde Dehydrogenase (Betb) From Staphylococcus Aureus
           (Idp00699) In Complex With Nad+
 pdb|3FG0|E Chain E, 1.85 Angstrom Resolution Crystal Structure Of Betaine
           Aldehyde Dehydrogenase (Betb) From Staphylococcus Aureus
           (Idp00699) In Complex With Nad+
 pdb|3FG0|F Chain F, 1.85 Angstrom Resolution Crystal Structure Of Betaine
           Aldehyde Dehydrogenase (Betb) From Staphylococcus Aureus
           (Idp00699) In Complex With Nad+
 pdb|3FG0|G Chain G, 1.85 Angstrom Resolution Crystal Structure Of Betaine
           Aldehyde Dehydrogenase (Betb) From Staphylococcus Aureus
           (Idp00699) In Complex With Nad+
 pdb|3FG0|H Chain H, 1.85 Angstrom Resolution Crystal Structure Of Betaine
           Aldehyde Dehydrogenase (Betb) From Staphylococcus Aureus
           (Idp00699) In Complex With Nad+
          Length = 520

 Score = 30.8 bits (68), Expect = 0.22,   Method: Composition-based stats.
 Identities = 13/26 (50%), Positives = 17/26 (65%)

Query: 81  DKRFRDLIPNYNQDIIFKDDEGTGAD 106
           +K  RD+I  YNQ++IF   EGT  D
Sbjct: 46  NKNTRDIINPYNQEVIFTVSEGTKED 71


>pdb|2ZZQ|A Chain A, Crystal Structure Analysis Of The Hev Capsid Protein,
           Porf2
          Length = 552

 Score = 28.5 bits (62), Expect = 1.0,   Method: Composition-based stats.
 Identities = 13/41 (31%), Positives = 23/41 (56%)

Query: 50  ITPLVYKQHVPNVSENTLTASGHSEGRISRDDKRFRDLIPN 90
           ++PL+  Q   N       AS +++ R++R   R+R L+PN
Sbjct: 104 LSPLLPLQDGTNTHIMATEASNYAQYRVARATIRYRPLVPN 144


>pdb|3IYO|A Chain A, Cryo-Em Model Of Virion-Sized Hev Virion-Sized Capsid
 pdb|3IYO|B Chain B, Cryo-Em Model Of Virion-Sized Hev Virion-Sized Capsid
 pdb|3IYO|D Chain D, Cryo-Em Model Of Virion-Sized Hev Virion-Sized Capsid
          Length = 660

 Score = 28.1 bits (61), Expect = 1.1,   Method: Composition-based stats.
 Identities = 13/41 (31%), Positives = 23/41 (56%)

Query: 50  ITPLVYKQHVPNVSENTLTASGHSEGRISRDDKRFRDLIPN 90
           ++PL+  Q   N       AS +++ R++R   R+R L+PN
Sbjct: 160 LSPLLPLQDGTNTHIMATEASNYAQYRVARATIRYRPLVPN 200


>pdb|2ZTN|A Chain A, Hepatitis E Virus Orf2 (Genotype 3)
          Length = 478

 Score = 26.6 bits (57), Expect = 3.5,   Method: Composition-based stats.
 Identities = 13/41 (31%), Positives = 21/41 (51%)

Query: 50 ITPLVYKQHVPNVSENTLTASGHSEGRISRDDKRFRDLIPN 90
          + PL+  Q   N       AS +++ R+ R   R+R L+PN
Sbjct: 32 LNPLLPLQDGTNTHIMATEASNYAQYRVVRATIRYRPLVPN 72


>pdb|1A7K|A Chain A, Glycosomal Glyceraldehyde-3-Phosphate Dehydrogenase In A
           Monoclinic Crystal Form
 pdb|1A7K|B Chain B, Glycosomal Glyceraldehyde-3-Phosphate Dehydrogenase In A
           Monoclinic Crystal Form
 pdb|1A7K|C Chain C, Glycosomal Glyceraldehyde-3-Phosphate Dehydrogenase In A
           Monoclinic Crystal Form
 pdb|1A7K|D Chain D, Glycosomal Glyceraldehyde-3-Phosphate Dehydrogenase In A
           Monoclinic Crystal Form
 pdb|1I32|A Chain A, Leishmania Mexicana Glyceraldehyde-3-Phosphate
           Dehydrogenase In Complex With Inhibitors
 pdb|1I32|B Chain B, Leishmania Mexicana Glyceraldehyde-3-Phosphate
           Dehydrogenase In Complex With Inhibitors
 pdb|1I32|C Chain C, Leishmania Mexicana Glyceraldehyde-3-Phosphate
           Dehydrogenase In Complex With Inhibitors
 pdb|1I32|D Chain D, Leishmania Mexicana Glyceraldehyde-3-Phosphate
           Dehydrogenase In Complex With Inhibitors
 pdb|1I32|E Chain E, Leishmania Mexicana Glyceraldehyde-3-Phosphate
           Dehydrogenase In Complex With Inhibitors
 pdb|1I32|F Chain F, Leishmania Mexicana Glyceraldehyde-3-Phosphate
           Dehydrogenase In Complex With Inhibitors
 pdb|1I33|A Chain A, Leishmania Mexicana Glyceraldehyde-3-Phosphate
           Dehydrogenase In Complex With Inhibitors
 pdb|1I33|B Chain B, Leishmania Mexicana Glyceraldehyde-3-Phosphate
           Dehydrogenase In Complex With Inhibitors
 pdb|1I33|C Chain C, Leishmania Mexicana Glyceraldehyde-3-Phosphate
           Dehydrogenase In Complex With Inhibitors
 pdb|1I33|D Chain D, Leishmania Mexicana Glyceraldehyde-3-Phosphate
           Dehydrogenase In Complex With Inhibitors
 pdb|1I33|E Chain E, Leishmania Mexicana Glyceraldehyde-3-Phosphate
           Dehydrogenase In Complex With Inhibitors
 pdb|1I33|F Chain F, Leishmania Mexicana Glyceraldehyde-3-Phosphate
           Dehydrogenase In Complex With Inhibitors
          Length = 360

 Score = 25.4 bits (54), Expect = 9.3,   Method: Compositional matrix adjust.
 Identities = 17/61 (27%), Positives = 28/61 (45%), Gaps = 1/61 (1%)

Query: 49  KITPLVYKQHVPNVSENTLTASGHSEGRISRDDKRFRDLIPNYNQDII-FKDDEGTGADR 107
           K+T + ++   P+VS   LT     +  I   DK  +     Y + I+ F D+E   AD 
Sbjct: 242 KLTGMSFRVPTPDVSVVDLTFRATRDTSIQEIDKAIKKAAQTYMKGILGFTDEELVSADF 301

Query: 108 L 108
           +
Sbjct: 302 I 302


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.321    0.138    0.423 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,476,672
Number of Sequences: 62578
Number of extensions: 135391
Number of successful extensions: 235
Number of sequences better than 100.0: 22
Number of HSP's better than 100.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 215
Number of HSP's gapped (non-prelim): 22
length of query: 122
length of database: 14,973,337
effective HSP length: 84
effective length of query: 38
effective length of database: 9,716,785
effective search space: 369237830
effective search space used: 369237830
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 45 (21.9 bits)