BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy4361
(122 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q91035|SHH_CHICK Sonic hedgehog protein OS=Gallus gallus GN=SHH PE=1 SV=1
Length = 425
Score = 117 bits (292), Expect = 3e-26, Method: Composition-based stats.
Identities = 53/93 (56%), Positives = 70/93 (75%), Gaps = 4/93 (4%)
Query: 19 YICVMCIVLRESMCCGPGGKSGRRRYDRYKKITPLVYKQHVPNVSENTLTASGHSEGRIS 78
+IC + ++ + CGPG G+RR+ KK+TPL YKQ +PNV+E TL ASG EG+I+
Sbjct: 15 FICAL--LVSSGLTCGPGRGIGKRRHP--KKLTPLAYKQFIPNVAEKTLGASGRYEGKIT 70
Query: 79 RDDKRFRDLIPNYNQDIIFKDDEGTGADRLMTQ 111
R+ +RF++L PNYN DIIFKD+E TGADRLMTQ
Sbjct: 71 RNSERFKELTPNYNPDIIFKDEENTGADRLMTQ 103
>sp|Q91610|DHHA_XENLA Desert hedgehog protein A OS=Xenopus laevis GN=dhh-a PE=2 SV=1
Length = 396
Score = 115 bits (288), Expect = 8e-26, Method: Composition-based stats.
Identities = 58/98 (59%), Positives = 70/98 (71%), Gaps = 5/98 (5%)
Query: 17 KVYICVMC--IVLRESMCCGPG-GKSGRRRYDRYKKITPLVYKQHVPNVSENTLTASGHS 73
++ I +C ++L CCGPG G GRRRY R K+ PL YKQ VPNV E TL ASG S
Sbjct: 5 RIVILAICCGLLLVPVRCCGPGRGPVGRRRYMR--KLVPLHYKQFVPNVPEKTLGASGKS 62
Query: 74 EGRISRDDKRFRDLIPNYNQDIIFKDDEGTGADRLMTQ 111
EG+I R +RF +L+PNYN DIIFKD+E TGADRLMT+
Sbjct: 63 EGKIHRGSERFIELVPNYNPDIIFKDEEKTGADRLMTE 100
>sp|O43323|DHH_HUMAN Desert hedgehog protein OS=Homo sapiens GN=DHH PE=1 SV=1
Length = 396
Score = 115 bits (287), Expect = 1e-25, Method: Composition-based stats.
Identities = 53/80 (66%), Positives = 64/80 (80%), Gaps = 2/80 (2%)
Query: 33 CGPG-GKSGRRRYDRYKKITPLVYKQHVPNVSENTLTASGHSEGRISRDDKRFRDLIPNY 91
CGPG G GRRRY R K++ PL+YKQ VP V E TL ASG +EGR++R +RFRDL+PNY
Sbjct: 23 CGPGRGPVGRRRYAR-KQLVPLLYKQFVPGVPERTLGASGPAEGRVARGSERFRDLVPNY 81
Query: 92 NQDIIFKDDEGTGADRLMTQ 111
N DIIFKD+E +GADRLMT+
Sbjct: 82 NPDIIFKDEENSGADRLMTE 101
>sp|Q90385|SHH_CYNPY Sonic hedgehog protein OS=Cynops pyrrhogaster GN=SHH PE=2 SV=1
Length = 432
Score = 114 bits (285), Expect = 2e-25, Method: Composition-based stats.
Identities = 53/93 (56%), Positives = 68/93 (73%), Gaps = 4/93 (4%)
Query: 19 YICVMCIVLRESMCCGPGGKSGRRRYDRYKKITPLVYKQHVPNVSENTLTASGHSEGRIS 78
+IC + ++ + CGPG G R+ R+KK+TPL YKQ PNV E TL ASG EG+I+
Sbjct: 15 FICAL--LVPSGLSCGPGRGIGTRK--RFKKLTPLAYKQFTPNVPEKTLGASGRYEGKIT 70
Query: 79 RDDKRFRDLIPNYNQDIIFKDDEGTGADRLMTQ 111
R+ +RF++L PNYN DIIFKD+E TGADRLMTQ
Sbjct: 71 RNSERFKELTPNYNPDIIFKDEENTGADRLMTQ 103
>sp|Q90419|TWHH_DANRE Tiggy-winkle hedgehog protein OS=Danio rerio GN=shhb PE=1 SV=1
Length = 416
Score = 114 bits (284), Expect = 2e-25, Method: Composition-based stats.
Identities = 57/110 (51%), Positives = 78/110 (70%), Gaps = 4/110 (3%)
Query: 15 KEKVYICVMCIVLRE-SMCCGPGGKSGRRRYDRYKKITPLVYKQHVPNVSENTLTASGHS 73
K+ +C + ++L + CGPG G+RR+ KK+TPL YKQ +PNV+E TL ASG
Sbjct: 8 KQFALLCFISLLLTPCGLACGPGRGYGKRRHP--KKLTPLAYKQFIPNVAEKTLGASGKY 65
Query: 74 EGRISRDDKRFRDLIPNYNQDIIFKDDEGTGADRLMTQ-LKNKMPHYADS 122
EG+I+R+ +RF++LIPNYN DIIFKD+E T ADRLMT+ K+K+ A S
Sbjct: 66 EGKITRNSERFKELIPNYNPDIIFKDEENTNADRLMTKRCKDKLNSLAIS 115
>sp|Q61488|DHH_MOUSE Desert hedgehog protein OS=Mus musculus GN=Dhh PE=1 SV=1
Length = 396
Score = 114 bits (284), Expect = 2e-25, Method: Composition-based stats.
Identities = 52/80 (65%), Positives = 65/80 (81%), Gaps = 2/80 (2%)
Query: 33 CGPG-GKSGRRRYDRYKKITPLVYKQHVPNVSENTLTASGHSEGRISRDDKRFRDLIPNY 91
CGPG G GRRRY R K++ PL+YKQ VP++ E TL ASG +EGR++R +RFRDL+PNY
Sbjct: 23 CGPGRGPVGRRRYVR-KQLVPLLYKQFVPSMPERTLGASGPAEGRVTRGSERFRDLVPNY 81
Query: 92 NQDIIFKDDEGTGADRLMTQ 111
N DIIFKD+E +GADRLMT+
Sbjct: 82 NPDIIFKDEENSGADRLMTE 101
>sp|Q62226|SHH_MOUSE Sonic hedgehog protein OS=Mus musculus GN=Shh PE=1 SV=2
Length = 437
Score = 113 bits (283), Expect = 3e-25, Method: Composition-based stats.
Identities = 51/81 (62%), Positives = 64/81 (79%), Gaps = 2/81 (2%)
Query: 31 MCCGPGGKSGRRRYDRYKKITPLVYKQHVPNVSENTLTASGHSEGRISRDDKRFRDLIPN 90
+ CGPG G+RR+ KK+TPL YKQ +PNV+E TL ASG EG+I+R+ +RF++L PN
Sbjct: 23 LACGPGRGFGKRRHP--KKLTPLAYKQFIPNVAEKTLGASGRYEGKITRNSERFKELTPN 80
Query: 91 YNQDIIFKDDEGTGADRLMTQ 111
YN DIIFKD+E TGADRLMTQ
Sbjct: 81 YNPDIIFKDEENTGADRLMTQ 101
>sp|Q15465|SHH_HUMAN Sonic hedgehog protein OS=Homo sapiens GN=SHH PE=1 SV=1
Length = 462
Score = 113 bits (283), Expect = 3e-25, Method: Composition-based stats.
Identities = 52/81 (64%), Positives = 64/81 (79%), Gaps = 2/81 (2%)
Query: 31 MCCGPGGKSGRRRYDRYKKITPLVYKQHVPNVSENTLTASGHSEGRISRDDKRFRDLIPN 90
+ CGPG G+RR+ KK+TPL YKQ +PNV+E TL ASG EG+ISR+ +RF++L PN
Sbjct: 22 LACGPGRGFGKRRHP--KKLTPLAYKQFIPNVAEKTLGASGRYEGKISRNSERFKELTPN 79
Query: 91 YNQDIIFKDDEGTGADRLMTQ 111
YN DIIFKD+E TGADRLMTQ
Sbjct: 80 YNPDIIFKDEENTGADRLMTQ 100
>sp|Q63673|SHH_RAT Sonic hedgehog protein OS=Rattus norvegicus GN=Shh PE=1 SV=1
Length = 437
Score = 111 bits (278), Expect = 1e-24, Method: Composition-based stats.
Identities = 50/81 (61%), Positives = 64/81 (79%), Gaps = 2/81 (2%)
Query: 31 MCCGPGGKSGRRRYDRYKKITPLVYKQHVPNVSENTLTASGHSEGRISRDDKRFRDLIPN 90
+ CGPG G+R++ KK+TPL YKQ +PNV+E TL ASG EG+I+R+ +RF++L PN
Sbjct: 23 LACGPGRGFGKRQHP--KKLTPLAYKQFIPNVAEKTLGASGRYEGKITRNSERFKELTPN 80
Query: 91 YNQDIIFKDDEGTGADRLMTQ 111
YN DIIFKD+E TGADRLMTQ
Sbjct: 81 YNPDIIFKDEENTGADRLMTQ 101
>sp|Q92000|SHH_XENLA Sonic hedgehog protein OS=Xenopus laevis GN=shh PE=2 SV=1
Length = 444
Score = 108 bits (271), Expect = 7e-24, Method: Composition-based stats.
Identities = 52/93 (55%), Positives = 67/93 (72%), Gaps = 4/93 (4%)
Query: 19 YICVMCIVLRESMCCGPGGKSGRRRYDRYKKITPLVYKQHVPNVSENTLTASGHSEGRIS 78
+IC + V + CGPG G+RR+ KK+TPL YKQ +PNV+E TL ASG EG+I+
Sbjct: 13 FICTL--VTPPGLACGPGRGIGKRRHP--KKLTPLAYKQFIPNVAEKTLGASGRYEGKIT 68
Query: 79 RDDKRFRDLIPNYNQDIIFKDDEGTGADRLMTQ 111
R+ F++L PNYN DI+FKD+E TGADRLMTQ
Sbjct: 69 RNSDCFKELTPNYNPDIMFKDEESTGADRLMTQ 101
>sp|Q98938|IHH_CHICK Indian hedgehog protein OS=Gallus gallus GN=IHH PE=2 SV=1
Length = 408
Score = 107 bits (267), Expect = 2e-23, Method: Composition-based stats.
Identities = 50/80 (62%), Positives = 59/80 (73%), Gaps = 1/80 (1%)
Query: 32 CCGPGGKSGRRRYDRYKKITPLVYKQHVPNVSENTLTASGHSEGRISRDDKRFRDLIPNY 91
CCGPG G RR +K+ PL YKQ PNV E TL ASG EG+I+R+ +RF++L PNY
Sbjct: 23 CCGPGRVVGSRRRPP-RKLIPLAYKQFSPNVPEKTLGASGRYEGKIARNSERFKELTPNY 81
Query: 92 NQDIIFKDDEGTGADRLMTQ 111
N DIIFKD+E TGADRLMTQ
Sbjct: 82 NPDIIFKDEENTGADRLMTQ 101
>sp|Q98862|IHH_DANRE Indian hedgehog B protein OS=Danio rerio GN=ihhb PE=2 SV=1
Length = 412
Score = 104 bits (260), Expect = 1e-22, Method: Composition-based stats.
Identities = 52/91 (57%), Positives = 65/91 (71%), Gaps = 3/91 (3%)
Query: 33 CGPGGKSGRRRYDRYKKITPLVYKQHVPNVSENTLTASGHSEGRISRDDKRFRDLIPNYN 92
CGPG G+RR R K+TPL YKQ PNV+E TL ASG EG+++ +RF++L PNYN
Sbjct: 24 CGPGRGYGKRRTPR--KLTPLAYKQFSPNVAEKTLGASGRYEGKVTPSSERFKELTPNYN 81
Query: 93 QDIIFKDDEGTGADRLMTQ-LKNKMPHYADS 122
DIIFKD+E TGADR+MTQ K+K+ A S
Sbjct: 82 PDIIFKDEENTGADRMMTQRCKDKLNSLAIS 112
>sp|P97812|IHH_MOUSE Indian hedgehog protein OS=Mus musculus GN=Ihh PE=1 SV=2
Length = 411
Score = 104 bits (260), Expect = 2e-22, Method: Composition-based stats.
Identities = 49/79 (62%), Positives = 57/79 (72%), Gaps = 1/79 (1%)
Query: 33 CGPGGKSGRRRYDRYKKITPLVYKQHVPNVSENTLTASGHSEGRISRDDKRFRDLIPNYN 92
CGPG G RR +K+ PL YKQ PNV E TL ASG EG+I+R +RF++L PNYN
Sbjct: 28 CGPGRVVGSRRRPP-RKLVPLAYKQFSPNVPEKTLGASGRYEGKIARSSERFKELTPNYN 86
Query: 93 QDIIFKDDEGTGADRLMTQ 111
DIIFKD+E TGADRLMTQ
Sbjct: 87 PDIIFKDEENTGADRLMTQ 105
>sp|Q14623|IHH_HUMAN Indian hedgehog protein OS=Homo sapiens GN=IHH PE=1 SV=4
Length = 411
Score = 104 bits (260), Expect = 2e-22, Method: Composition-based stats.
Identities = 49/79 (62%), Positives = 57/79 (72%), Gaps = 1/79 (1%)
Query: 33 CGPGGKSGRRRYDRYKKITPLVYKQHVPNVSENTLTASGHSEGRISRDDKRFRDLIPNYN 92
CGPG G RR +K+ PL YKQ PNV E TL ASG EG+I+R +RF++L PNYN
Sbjct: 28 CGPGRVVGSRRRPP-RKLVPLAYKQFSPNVPEKTLGASGRYEGKIARSSERFKELTPNYN 86
Query: 93 QDIIFKDDEGTGADRLMTQ 111
DIIFKD+E TGADRLMTQ
Sbjct: 87 PDIIFKDEENTGADRLMTQ 105
>sp|Q92008|SHH_DANRE Sonic hedgehog protein A OS=Danio rerio GN=shha PE=1 SV=1
Length = 418
Score = 101 bits (251), Expect = 1e-21, Method: Composition-based stats.
Identities = 48/76 (63%), Positives = 60/76 (78%), Gaps = 1/76 (1%)
Query: 48 KKITPLVYKQHVPNVSENTLTASGHSEGRISRDDKRFRDLIPNYNQDIIFKDDEGTGADR 107
KK+TPL YKQ +PNV+E TL ASG EG+I+R+ +RF++L PNYN DIIFKD+E TGADR
Sbjct: 37 KKLTPLAYKQFIPNVAEKTLGASGRYEGKITRNSERFKELTPNYNPDIIFKDEENTGADR 96
Query: 108 LMTQ-LKNKMPHYADS 122
LMTQ K+K+ A S
Sbjct: 97 LMTQRCKDKLNSLAIS 112
>sp|Q02936|HH_DROME Protein hedgehog OS=Drosophila melanogaster GN=hh PE=1 SV=4
Length = 471
Score = 100 bits (250), Expect = 2e-21, Method: Composition-based stats.
Identities = 47/92 (51%), Positives = 65/92 (70%), Gaps = 3/92 (3%)
Query: 20 ICVMCIVLRESMCCGPGGKSGRRRYDRYKKITPLVYKQHVPNVSENTLTASGHSEGRISR 79
+ V+ +V + CGPG GR R + + PLV KQ +PN+SE T +ASG EG I R
Sbjct: 72 LIVLPMVFSPAHSCGPGRGLGRHRA---RNLYPLVLKQTIPNLSEYTNSASGPLEGVIRR 128
Query: 80 DDKRFRDLIPNYNQDIIFKDDEGTGADRLMTQ 111
D +F+DL+PNYN+DI+F+D+EGTGADRLM++
Sbjct: 129 DSPKFKDLVPNYNRDILFRDEEGTGADRLMSK 160
>sp|B4HFB7|HH_DROSE Protein hedgehog OS=Drosophila sechellia GN=hh PE=3 SV=1
Length = 465
Score = 99.8 bits (247), Expect = 4e-21, Method: Composition-based stats.
Identities = 46/92 (50%), Positives = 65/92 (70%), Gaps = 3/92 (3%)
Query: 20 ICVMCIVLRESMCCGPGGKSGRRRYDRYKKITPLVYKQHVPNVSENTLTASGHSEGRISR 79
+ V+ ++ + CGPG GR R + + PLV KQ +PN+SE T +ASG EG I R
Sbjct: 66 LIVLPMMFSPAHSCGPGRGLGRHRA---RNLYPLVLKQTIPNLSEYTNSASGPLEGVIRR 122
Query: 80 DDKRFRDLIPNYNQDIIFKDDEGTGADRLMTQ 111
D +F+DL+PNYN+DI+F+D+EGTGADRLM++
Sbjct: 123 DSPKFKDLVPNYNRDILFRDEEGTGADRLMSK 154
>sp|B3P7F8|HH_DROER Protein hedgehog OS=Drosophila erecta GN=hh PE=3 SV=1
Length = 465
Score = 99.8 bits (247), Expect = 5e-21, Method: Composition-based stats.
Identities = 46/92 (50%), Positives = 64/92 (69%), Gaps = 3/92 (3%)
Query: 20 ICVMCIVLRESMCCGPGGKSGRRRYDRYKKITPLVYKQHVPNVSENTLTASGHSEGRISR 79
+ V+ + + CGPG GR R + + PLV KQ +PN+SE T +ASG EG I R
Sbjct: 66 LIVLPMTFSPAHSCGPGRGLGRHRA---RNLYPLVLKQTIPNLSEYTNSASGPLEGVIRR 122
Query: 80 DDKRFRDLIPNYNQDIIFKDDEGTGADRLMTQ 111
D +F+DL+PNYN+DI+F+D+EGTGADRLM++
Sbjct: 123 DSPKFKDLVPNYNRDILFRDEEGTGADRLMSK 154
>sp|B4R1D8|HH_DROSI Protein hedgehog OS=Drosophila simulans GN=hh PE=3 SV=1
Length = 395
Score = 99.4 bits (246), Expect = 6e-21, Method: Composition-based stats.
Identities = 46/92 (50%), Positives = 65/92 (70%), Gaps = 3/92 (3%)
Query: 20 ICVMCIVLRESMCCGPGGKSGRRRYDRYKKITPLVYKQHVPNVSENTLTASGHSEGRISR 79
+ V+ ++ + CGPG GR R + + PLV KQ +PN+SE T +ASG EG I R
Sbjct: 70 LIVLPMMFSPAHSCGPGRGLGRHRA---RNLYPLVLKQTIPNLSEYTNSASGPLEGVIRR 126
Query: 80 DDKRFRDLIPNYNQDIIFKDDEGTGADRLMTQ 111
D +F+DL+PNYN+DI+F+D+EGTGADRLM++
Sbjct: 127 DSPKFKDLVPNYNRDILFRDEEGTGADRLMSK 158
>sp|B4PN49|HH_DROYA Protein hedgehog OS=Drosophila yakuba GN=hh PE=3 SV=1
Length = 465
Score = 99.0 bits (245), Expect = 8e-21, Method: Composition-based stats.
Identities = 45/79 (56%), Positives = 59/79 (74%), Gaps = 3/79 (3%)
Query: 33 CGPGGKSGRRRYDRYKKITPLVYKQHVPNVSENTLTASGHSEGRISRDDKRFRDLIPNYN 92
CGPG GR R + + PLV KQ +PN+SE T +ASG EG I RD +F+DL+PNYN
Sbjct: 79 CGPGRGLGRHRA---RNLYPLVLKQTIPNLSEYTNSASGPLEGVIRRDSPKFKDLVPNYN 135
Query: 93 QDIIFKDDEGTGADRLMTQ 111
+DI+F+D+EGTGADRLM++
Sbjct: 136 RDILFRDEEGTGADRLMSK 154
>sp|Q91611|DHHB_XENLA Desert hedgehog protein B OS=Xenopus laevis GN=dhh-b PE=2 SV=1
Length = 398
Score = 97.1 bits (240), Expect = 3e-20, Method: Composition-based stats.
Identities = 50/91 (54%), Positives = 61/91 (67%)
Query: 21 CVMCIVLRESMCCGPGGKSGRRRYDRYKKITPLVYKQHVPNVSENTLTASGHSEGRISRD 80
C ++L CCGPG R +++ PL+YKQ VPNV E TL ASG SEG+I R
Sbjct: 12 CCCWLLLLPVRCCGPGRGPVGGRRRYMRRLVPLLYKQFVPNVPEKTLGASGKSEGKIRRG 71
Query: 81 DKRFRDLIPNYNQDIIFKDDEGTGADRLMTQ 111
+RF L+PNYN DIIFKD+E TGADRLMT+
Sbjct: 72 SERFIKLVPNYNPDIIFKDEENTGADRLMTE 102
>sp|Q91612|IHH_XENLA Indian hedgehog protein OS=Xenopus laevis GN=ihh PE=2 SV=1
Length = 409
Score = 94.7 bits (234), Expect = 1e-19, Method: Composition-based stats.
Identities = 43/63 (68%), Positives = 51/63 (80%)
Query: 49 KITPLVYKQHVPNVSENTLTASGHSEGRISRDDKRFRDLIPNYNQDIIFKDDEGTGADRL 108
K++PL YKQ PNV E TL ASG EG+ISR+ +RF++L PNYN DIIFKD+E TGADRL
Sbjct: 38 KLSPLSYKQFSPNVPEKTLGASGRYEGKISRNSERFKELTPNYNPDIIFKDEEITGADRL 97
Query: 109 MTQ 111
MTQ
Sbjct: 98 MTQ 100
>sp|B4NJP3|HH_DROWI Protein hedgehog OS=Drosophila willistoni GN=hh PE=3 SV=1
Length = 469
Score = 93.2 bits (230), Expect = 4e-19, Method: Composition-based stats.
Identities = 41/64 (64%), Positives = 52/64 (81%)
Query: 48 KKITPLVYKQHVPNVSENTLTASGHSEGRISRDDKRFRDLIPNYNQDIIFKDDEGTGADR 107
+ + PLV KQ VPN+SE+ L ASG EG I RD +F+DL+PNYN+DI+FKD+EGTGADR
Sbjct: 89 QNLYPLVLKQTVPNLSEHQLGASGPLEGEIPRDSPKFKDLVPNYNRDIVFKDEEGTGADR 148
Query: 108 LMTQ 111
LMT+
Sbjct: 149 LMTK 152
>sp|Q29AA9|HH_DROPS Protein hedgehog OS=Drosophila pseudoobscura pseudoobscura GN=hh-1
PE=3 SV=2
Length = 481
Score = 87.4 bits (215), Expect = 2e-17, Method: Composition-based stats.
Identities = 38/60 (63%), Positives = 48/60 (80%)
Query: 52 PLVYKQHVPNVSENTLTASGHSEGRISRDDKRFRDLIPNYNQDIIFKDDEGTGADRLMTQ 111
PLV KQ +PN+SE ASG EG I RD +F+DL+PNYN+DI+F+D+EGTGADRLMT+
Sbjct: 109 PLVLKQTIPNLSEYQTGASGPLEGEIKRDSPKFKDLVPNYNRDILFRDEEGTGADRLMTK 168
>sp|B3LV44|HH_DROAN Protein hedgehog OS=Drosophila ananassae GN=hh PE=3 SV=1
Length = 472
Score = 87.4 bits (215), Expect = 3e-17, Method: Composition-based stats.
Identities = 39/60 (65%), Positives = 49/60 (81%)
Query: 52 PLVYKQHVPNVSENTLTASGHSEGRISRDDKRFRDLIPNYNQDIIFKDDEGTGADRLMTQ 111
PLV KQ +PN+SE T ASG EG I RD +F+DL+PNYN+DI+F+DDEGTGADRLM++
Sbjct: 100 PLVLKQTIPNLSEYTSGASGPLEGPIRRDSPKFKDLVPNYNRDILFRDDEGTGADRLMSK 159
>sp|B4G2I8|HH_DROPE Protein hedgehog OS=Drosophila persimilis GN=hh PE=3 SV=1
Length = 481
Score = 87.0 bits (214), Expect = 3e-17, Method: Composition-based stats.
Identities = 38/60 (63%), Positives = 48/60 (80%)
Query: 52 PLVYKQHVPNVSENTLTASGHSEGRISRDDKRFRDLIPNYNQDIIFKDDEGTGADRLMTQ 111
PLV KQ +PN+SE ASG EG I RD +F+DL+PNYN+DI+F+D+EGTGADRLMT+
Sbjct: 109 PLVLKQTIPNLSEYQSGASGPLEGEIKRDSPKFKDLVPNYNRDILFRDEEGTGADRLMTK 168
>sp|B4LZT9|HH_DROVI Protein hedgehog OS=Drosophila virilis GN=hh PE=3 SV=1
Length = 483
Score = 85.5 bits (210), Expect = 9e-17, Method: Composition-based stats.
Identities = 39/60 (65%), Positives = 47/60 (78%)
Query: 52 PLVYKQHVPNVSENTLTASGHSEGRISRDDKRFRDLIPNYNQDIIFKDDEGTGADRLMTQ 111
PLV KQ VPN+SE ASG EG I RD F+DL+PNYN+DIIF+D+EGTGADRLM++
Sbjct: 109 PLVLKQTVPNLSEYMSGASGPIEGVIQRDSPNFKDLVPNYNRDIIFRDEEGTGADRLMSK 168
>sp|P79850|SHH_PUNTE Sonic hedgehog protein (Fragments) OS=Puntius tetrazona GN=shh PE=3
SV=2
Length = 121
Score = 85.5 bits (210), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 40/64 (62%), Positives = 51/64 (79%), Gaps = 2/64 (3%)
Query: 40 GRRRYDRYKKITPLVYKQHVPNVSENTLTASGHSEGRISRDDKRFRDLIPNYNQDIIFKD 99
GRRR+ KK+TPL YKQ +PNV+E TL ASG EG+I+R+ +RF++L PNYN DIIFKD
Sbjct: 2 GRRRHP--KKLTPLAYKQFIPNVAEKTLGASGRYEGKITRNSERFKELTPNYNPDIIFKD 59
Query: 100 DEGT 103
+E T
Sbjct: 60 EENT 63
>sp|P79691|SHH_CARAU Sonic hedgehog protein (Fragments) OS=Carassius auratus GN=shh PE=3
SV=2
Length = 121
Score = 85.5 bits (210), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 40/64 (62%), Positives = 51/64 (79%), Gaps = 2/64 (3%)
Query: 40 GRRRYDRYKKITPLVYKQHVPNVSENTLTASGHSEGRISRDDKRFRDLIPNYNQDIIFKD 99
GRRR+ KK+TPL YKQ +PNV+E TL ASG EG+I+R+ +RF++L PNYN DIIFKD
Sbjct: 2 GRRRHP--KKLTPLAYKQFIPNVAEKTLGASGRYEGKITRNSERFKELTPNYNPDIIFKD 59
Query: 100 DEGT 103
+E T
Sbjct: 60 EENT 63
>sp|P79838|SHH_PUNCO Sonic hedgehog protein (Fragments) OS=Puntius conchonius GN=shh
PE=3 SV=2
Length = 121
Score = 85.1 bits (209), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 40/64 (62%), Positives = 51/64 (79%), Gaps = 2/64 (3%)
Query: 40 GRRRYDRYKKITPLVYKQHVPNVSENTLTASGHSEGRISRDDKRFRDLIPNYNQDIIFKD 99
GRRR+ KK+TPL YKQ +PNV+E TL ASG EG+I+R+ +RF++L PNYN DIIFKD
Sbjct: 2 GRRRHP--KKLTPLAYKQFIPNVAEKTLGASGRYEGKITRNSERFKELTPNYNPDIIFKD 59
Query: 100 DEGT 103
+E T
Sbjct: 60 EENT 63
>sp|P79915|SHH_TANAL Sonic hedgehog protein (Fragments) OS=Tanichthys albonubes GN=shh
PE=3 SV=2
Length = 121
Score = 85.1 bits (209), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 40/64 (62%), Positives = 51/64 (79%), Gaps = 2/64 (3%)
Query: 40 GRRRYDRYKKITPLVYKQHVPNVSENTLTASGHSEGRISRDDKRFRDLIPNYNQDIIFKD 99
GRRR+ KK+TPL YKQ +PNV+E TL ASG EG+I+R+ +RF++L PNYN DIIFKD
Sbjct: 2 GRRRHP--KKLTPLAYKQFIPNVAEKTLGASGRYEGKITRNSERFKELTPNYNPDIIFKD 59
Query: 100 DEGT 103
+E T
Sbjct: 60 EENT 63
>sp|O13250|SHH_DEVPA Sonic hedgehog protein (Fragments) OS=Devario pathirana GN=shh PE=3
SV=2
Length = 121
Score = 85.1 bits (209), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 40/64 (62%), Positives = 51/64 (79%), Gaps = 2/64 (3%)
Query: 40 GRRRYDRYKKITPLVYKQHVPNVSENTLTASGHSEGRISRDDKRFRDLIPNYNQDIIFKD 99
GRRR+ KK+TPL YKQ +PNV+E TL ASG EG+I+R+ +RF++L PNYN DIIFKD
Sbjct: 2 GRRRHP--KKLTPLAYKQFIPNVAEKTLGASGRYEGKITRNSERFKELTPNYNPDIIFKD 59
Query: 100 DEGT 103
+E T
Sbjct: 60 EENT 63
>sp|O13247|SHH_DEVMA Sonic hedgehog protein (Fragments) OS=Devario malabaricus GN=shh
PE=3 SV=2
Length = 121
Score = 85.1 bits (209), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 40/64 (62%), Positives = 51/64 (79%), Gaps = 2/64 (3%)
Query: 40 GRRRYDRYKKITPLVYKQHVPNVSENTLTASGHSEGRISRDDKRFRDLIPNYNQDIIFKD 99
GRRR+ KK+TPL YKQ +PNV+E TL ASG EG+I+R+ +RF++L PNYN DIIFKD
Sbjct: 2 GRRRHP--KKLTPLAYKQFIPNVAEKTLGASGRYEGKITRNSERFKELTPNYNPDIIFKD 59
Query: 100 DEGT 103
+E T
Sbjct: 60 EENT 63
>sp|O13241|SHH_DEVDE Sonic hedgehog protein (Fragments) OS=Devario devario GN=shh PE=3
SV=2
Length = 121
Score = 85.1 bits (209), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 40/64 (62%), Positives = 51/64 (79%), Gaps = 2/64 (3%)
Query: 40 GRRRYDRYKKITPLVYKQHVPNVSENTLTASGHSEGRISRDDKRFRDLIPNYNQDIIFKD 99
GRRR+ KK+TPL YKQ +PNV+E TL ASG EG+I+R+ +RF++L PNYN DIIFKD
Sbjct: 2 GRRRHP--KKLTPLAYKQFIPNVAEKTLGASGRYEGKITRNSERFKELTPNYNPDIIFKD 59
Query: 100 DEGT 103
+E T
Sbjct: 60 EENT 63
>sp|O13234|SHH_DEVAE Sonic hedgehog protein (Fragments) OS=Devario aequipinnatus GN=shh
PE=3 SV=2
Length = 121
Score = 85.1 bits (209), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 40/64 (62%), Positives = 51/64 (79%), Gaps = 2/64 (3%)
Query: 40 GRRRYDRYKKITPLVYKQHVPNVSENTLTASGHSEGRISRDDKRFRDLIPNYNQDIIFKD 99
GRRR+ KK+TPL YKQ +PNV+E TL ASG EG+I+R+ +RF++L PNYN DIIFKD
Sbjct: 2 GRRRHP--KKLTPLAYKQFIPNVAEKTLGASGRYEGKITRNSERFKELTPNYNPDIIFKD 59
Query: 100 DEGT 103
+E T
Sbjct: 60 EENT 63
>sp|P79709|SHH_DANKE Sonic hedgehog protein (Fragments) OS=Danio kerri GN=shh PE=3 SV=2
Length = 121
Score = 85.1 bits (209), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 40/64 (62%), Positives = 51/64 (79%), Gaps = 2/64 (3%)
Query: 40 GRRRYDRYKKITPLVYKQHVPNVSENTLTASGHSEGRISRDDKRFRDLIPNYNQDIIFKD 99
GRRR+ KK+TPL YKQ +PNV+E TL ASG EG+I+R+ +RF++L PNYN DIIFKD
Sbjct: 2 GRRRHP--KKLTPLAYKQFIPNVAEKTLGASGRYEGKITRNSERFKELTPNYNPDIIFKD 59
Query: 100 DEGT 103
+E T
Sbjct: 60 EENT 63
>sp|O13238|SHH_DANAT Sonic hedgehog protein (Fragments) OS=Danio aff. tweediei GN=shh
PE=3 SV=2
Length = 121
Score = 85.1 bits (209), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 40/64 (62%), Positives = 51/64 (79%), Gaps = 2/64 (3%)
Query: 40 GRRRYDRYKKITPLVYKQHVPNVSENTLTASGHSEGRISRDDKRFRDLIPNYNQDIIFKD 99
GRRR+ KK+TPL YKQ +PNV+E TL ASG EG+I+R+ +RF++L PNYN DIIFKD
Sbjct: 2 GRRRHP--KKLTPLAYKQFIPNVAEKTLGASGRYEGKITRNSERFKELTPNYNPDIIFKD 59
Query: 100 DEGT 103
+E T
Sbjct: 60 EENT 63
>sp|P79717|SHH_DANAP Sonic hedgehog protein (Fragments) OS=Danio albolineatus pulcher
GN=shh PE=3 SV=2
Length = 121
Score = 85.1 bits (209), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 40/64 (62%), Positives = 51/64 (79%), Gaps = 2/64 (3%)
Query: 40 GRRRYDRYKKITPLVYKQHVPNVSENTLTASGHSEGRISRDDKRFRDLIPNYNQDIIFKD 99
GRRR+ KK+TPL YKQ +PNV+E TL ASG EG+I+R+ +RF++L PNYN DIIFKD
Sbjct: 2 GRRRHP--KKLTPLAYKQFIPNVAEKTLGASGRYEGKITRNSERFKELTPNYNPDIIFKD 59
Query: 100 DEGT 103
+E T
Sbjct: 60 EENT 63
>sp|O13235|SHH_DANAA Sonic hedgehog protein (Fragments) OS=Danio aff. albolineatus
GN=shh PE=3 SV=2
Length = 121
Score = 85.1 bits (209), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 40/64 (62%), Positives = 51/64 (79%), Gaps = 2/64 (3%)
Query: 40 GRRRYDRYKKITPLVYKQHVPNVSENTLTASGHSEGRISRDDKRFRDLIPNYNQDIIFKD 99
GRRR+ KK+TPL YKQ +PNV+E TL ASG EG+I+R+ +RF++L PNYN DIIFKD
Sbjct: 2 GRRRHP--KKLTPLAYKQFIPNVAEKTLGASGRYEGKITRNSERFKELTPNYNPDIIFKD 59
Query: 100 DEGT 103
+E T
Sbjct: 60 EENT 63
>sp|P79864|SHH_TRIHE Sonic hedgehog protein (Fragments) OS=Trigonostigma heteromorpha
GN=shh PE=3 SV=2
Length = 121
Score = 84.3 bits (207), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 39/64 (60%), Positives = 51/64 (79%), Gaps = 2/64 (3%)
Query: 40 GRRRYDRYKKITPLVYKQHVPNVSENTLTASGHSEGRISRDDKRFRDLIPNYNQDIIFKD 99
G+RR+ KK+TPL YKQ +PNV+E TL ASG EG+I+R+ +RF++L PNYN DIIFKD
Sbjct: 2 GKRRHP--KKLTPLAYKQFIPNVAEKTLGASGRYEGKITRNSERFKELTPNYNPDIIFKD 59
Query: 100 DEGT 103
+E T
Sbjct: 60 EENT 63
>sp|P79858|SHH_RASEL Sonic hedgehog protein (Fragments) OS=Rasbora elegans GN=shh PE=3
SV=2
Length = 121
Score = 84.0 bits (206), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 39/64 (60%), Positives = 51/64 (79%), Gaps = 2/64 (3%)
Query: 40 GRRRYDRYKKITPLVYKQHVPNVSENTLTASGHSEGRISRDDKRFRDLIPNYNQDIIFKD 99
G+RR+ KK+TPL YKQ +PNV+E TL ASG EG+I+R+ +RF++L PNYN DIIFKD
Sbjct: 2 GKRRHP--KKLTPLAYKQFIPNVAEKTLGASGRYEGKITRNSERFKELTPNYNPDIIFKD 59
Query: 100 DEGT 103
+E T
Sbjct: 60 EENT 63
>sp|P79869|SHH_RASPA Sonic hedgehog protein (Fragments) OS=Rasbora paviana GN=shh PE=3
SV=2
Length = 121
Score = 83.6 bits (205), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 39/64 (60%), Positives = 51/64 (79%), Gaps = 2/64 (3%)
Query: 40 GRRRYDRYKKITPLVYKQHVPNVSENTLTASGHSEGRISRDDKRFRDLIPNYNQDIIFKD 99
G+RR+ KK+TPL YKQ +PNV+E TL ASG EG+I+R+ +RF++L PNYN DIIFKD
Sbjct: 2 GQRRHP--KKLTPLAYKQFIPNVAEKTLGASGRYEGKITRNSERFKELTPNYNPDIIFKD 59
Query: 100 DEGT 103
+E T
Sbjct: 60 EENT 63
>sp|P79682|SHH_AMBCH Sonic hedgehog protein (Fragments) OS=Amblypharyngodon chulabhornae
GN=shh PE=3 SV=2
Length = 121
Score = 82.4 bits (202), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 36/56 (64%), Positives = 46/56 (82%)
Query: 48 KKITPLVYKQHVPNVSENTLTASGHSEGRISRDDKRFRDLIPNYNQDIIFKDDEGT 103
KK+TPL YKQ +PNV+E TL ASG EG+I+R+ +RF++L PNYN DIIFKD+E T
Sbjct: 8 KKLTPLAYKQFIPNVAEKTLGASGRYEGKITRNSERFKELTPNYNPDIIFKDEENT 63
>sp|B4JTF5|HH_DROGR Protein hedgehog OS=Drosophila grimshawi GN=hh PE=3 SV=1
Length = 479
Score = 79.0 bits (193), Expect = 8e-15, Method: Composition-based stats.
Identities = 40/72 (55%), Positives = 50/72 (69%), Gaps = 1/72 (1%)
Query: 52 PLVYKQHVPNVSENTLTASGHSEGRISRDDKRFRDLIPNYNQDIIFKDDEGTGADRLMTQ 111
PLV KQ VPN+SE ASG EG I R +F+DL+P YN DI+F+D+EGTGADR+MT+
Sbjct: 100 PLVLKQTVPNLSEYQSGASGPLEGVIDRKSPKFKDLVPLYNSDILFRDEEGTGADRMMTK 159
Query: 112 -LKNKMPHYADS 122
K K+ A S
Sbjct: 160 RCKEKLVMLATS 171
>sp|B4K4M0|HH_DROMO Protein hedgehog OS=Drosophila mojavensis GN=hh PE=3 SV=1
Length = 476
Score = 77.4 bits (189), Expect = 2e-14, Method: Composition-based stats.
Identities = 35/60 (58%), Positives = 47/60 (78%)
Query: 52 PLVYKQHVPNVSENTLTASGHSEGRISRDDKRFRDLIPNYNQDIIFKDDEGTGADRLMTQ 111
PLV KQ VPN+SE ASG EG I RD +F++L+ NYN+DI+F+D+EGTGADR+M++
Sbjct: 102 PLVLKQTVPNLSEYHNGASGPLEGVIHRDSPKFKNLVLNYNKDILFRDEEGTGADRVMSK 161
>sp|P56674|HH_DROHY Protein hedgehog OS=Drosophila hydei GN=hh PE=3 SV=4
Length = 481
Score = 76.6 bits (187), Expect = 4e-14, Method: Composition-based stats.
Identities = 35/60 (58%), Positives = 47/60 (78%)
Query: 52 PLVYKQHVPNVSENTLTASGHSEGRISRDDKRFRDLIPNYNQDIIFKDDEGTGADRLMTQ 111
PLV KQ VPN+SE +ASG EG I RD +F++L+ NYN+DI F+D+EGTGADR+M++
Sbjct: 107 PLVLKQTVPNLSEYHNSASGPLEGAIQRDSPKFKNLVLNYNRDIEFRDEEGTGADRVMSK 166
>sp|B3EAK6|KDSB_GEOLS 3-deoxy-manno-octulosonate cytidylyltransferase OS=Geobacter
lovleyi (strain ATCC BAA-1151 / DSM 17278 / SZ) GN=kdsB
PE=3 SV=1
Length = 252
Score = 32.3 bits (72), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
Query: 48 KKITPLVYKQHVPNVSENTLTASGHSEGRISRDDKRFRDLIPNY-NQDIIFKDDEGTGAD 106
K + L K + +V E T+ AS S ++ DD+R D+I + I+ D TG D
Sbjct: 19 KALADLAGKPMIQHVYEQTIRASLVSRAIVATDDRRIADVIHQIGGEAIMTSTDHETGTD 78
Query: 107 RL 108
RL
Sbjct: 79 RL 80
>sp|Q6MD00|KDSB_PARUW 3-deoxy-manno-octulosonate cytidylyltransferase OS=Protochlamydia
amoebophila (strain UWE25) GN=kdsB PE=3 SV=1
Length = 259
Score = 30.8 bits (68), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
Query: 64 ENTLTASGHSEGRISRDDKRFRDLIPNYNQDIIFKDDE-GTGADRLMTQLK 113
EN+L AS S+ ++ DD+R + + ++N ++ ++ TG DRL L
Sbjct: 42 ENSLRASALSDLIVATDDERIFEHVRSFNGKVVMTSEQCPTGTDRLAEVLS 92
>sp|B1AYB6|MBD5_MOUSE Methyl-CpG-binding domain protein 5 OS=Mus musculus GN=Mbd5 PE=2 SV=1
Length = 1498
Score = 30.0 bits (66), Expect = 4.0, Method: Composition-based stats.
Identities = 19/77 (24%), Positives = 36/77 (46%), Gaps = 5/77 (6%)
Query: 43 RYDRYKKITPLVYKQHVPNVSENTLTASGHSEGRISRDDKRFRDLIPNYNQDIIFKDDEG 102
RY+ YK+ T + +K+ + E+T+ H G R + F +L+ QD++ +
Sbjct: 1269 RYNNYKR-TMMSFKERL----ESTVERCTHINGNRPRQSRGFGELLGTAKQDLVLEGQSP 1323
Query: 103 TGADRLMTQLKNKMPHY 119
++ L + L HY
Sbjct: 1324 GSSNSLESSLVKDYIHY 1340
>sp|Q9P267|MBD5_HUMAN Methyl-CpG-binding domain protein 5 OS=Homo sapiens GN=MBD5 PE=1 SV=3
Length = 1494
Score = 30.0 bits (66), Expect = 4.7, Method: Composition-based stats.
Identities = 16/57 (28%), Positives = 30/57 (52%), Gaps = 5/57 (8%)
Query: 43 RYDRYKKITPLVYKQHVPNVSENTLTASGHSEGRISRDDKRFRDLIPNYNQDIIFKD 99
RY+ YK+ T + +K+ + ENT+ H G R + F +L+ QD++ ++
Sbjct: 1265 RYNNYKR-TMMSFKERL----ENTVERCAHINGNRPRQSRGFGELLSTAKQDLVLEE 1316
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.135 0.397
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 50,666,865
Number of Sequences: 539616
Number of extensions: 2150958
Number of successful extensions: 14454
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 53
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 14302
Number of HSP's gapped (non-prelim): 127
length of query: 122
length of database: 191,569,459
effective HSP length: 89
effective length of query: 33
effective length of database: 143,543,635
effective search space: 4736939955
effective search space used: 4736939955
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)