Query psy4361
Match_columns 122
No_of_seqs 76 out of 78
Neff 2.4
Searched_HMMs 46136
Date Fri Aug 16 23:34:31 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4361.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/4361hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF01085 HH_signal: Hedgehog a 100.0 8E-55 1.7E-59 335.8 2.8 87 33-122 1-88 (160)
2 KOG3638|consensus 97.9 9.2E-06 2E-10 69.1 3.1 90 25-122 32-123 (414)
3 PF05032 Spo12: Spo12 family; 77.8 0.66 1.4E-05 28.7 -0.1 15 105-119 4-18 (35)
4 KOG3340|consensus 49.9 6.8 0.00015 35.3 0.6 25 82-106 200-224 (454)
5 PHA00725 hypothetical protein 40.6 13 0.00027 26.9 0.7 14 72-85 9-22 (81)
6 PF15086 UPF0542: Uncharacteri 37.0 22 0.00047 25.3 1.4 17 2-18 49-65 (74)
7 KOG2756|consensus 36.3 14 0.00029 32.6 0.4 14 87-100 125-138 (349)
8 KOG2422|consensus 35.6 11 0.00023 35.7 -0.4 15 2-16 88-102 (665)
9 PF07359 LEAP-2: Liver-express 34.1 14 0.0003 26.5 0.0 31 35-73 26-56 (77)
10 PF00739 X: Trans-activation p 33.4 14 0.0003 29.0 0.0 41 65-116 96-141 (142)
11 PF14582 Metallophos_3: Metall 29.9 16 0.00034 31.1 -0.3 38 52-98 175-212 (255)
12 smart00812 Alpha_L_fucos Alpha 29.5 20 0.00043 30.6 0.3 20 82-101 183-202 (384)
13 COG0587 DnaE DNA polymerase II 29.0 22 0.00047 35.2 0.5 14 29-42 353-366 (1139)
14 PF01120 Alpha_L_fucos: Alpha- 28.1 16 0.00036 30.1 -0.4 22 82-103 196-217 (346)
15 KOG2403|consensus 27.3 50 0.0011 31.3 2.5 74 22-101 340-421 (642)
16 PF10184 DUF2358: Uncharacteri 26.7 40 0.00086 23.6 1.4 19 90-108 23-43 (113)
17 PTZ00459 mucin-associated surf 25.9 40 0.00086 28.0 1.4 16 18-33 10-26 (291)
18 PF13837 Myb_DNA-bind_4: Myb/S 24.8 29 0.00063 22.2 0.4 16 104-119 48-63 (90)
19 KOG3190|consensus 24.8 19 0.00042 30.6 -0.6 18 79-96 112-129 (256)
20 PF03343 SART-1: SART-1 family 24.6 25 0.00054 31.1 0.0 31 77-111 549-581 (613)
21 PF14330 DUF4387: Domain of un 23.8 22 0.00048 26.1 -0.4 9 94-102 21-29 (99)
22 COG1222 RPT1 ATP-dependent 26S 23.5 59 0.0013 29.3 2.1 24 87-110 239-272 (406)
23 cd01143 YvrC Periplasmic bindi 23.2 26 0.00057 24.6 -0.1 12 86-97 183-194 (195)
24 cd01834 SGNH_hydrolase_like_2 22.4 56 0.0012 22.4 1.4 35 61-98 33-67 (191)
25 KOG0727|consensus 22.3 61 0.0013 28.9 2.0 31 87-117 243-284 (408)
26 cd04502 SGNH_hydrolase_like_7 21.6 39 0.00085 23.5 0.5 41 55-98 16-56 (171)
27 PLN02161 beta-amylase 21.4 53 0.0011 30.4 1.4 15 89-103 199-213 (531)
28 PLN02803 beta-amylase 21.3 53 0.0011 30.5 1.4 14 90-103 190-203 (548)
29 cd05778 DNA_polB_zeta_exo inac 20.8 26 0.00055 27.4 -0.6 16 83-98 87-102 (231)
30 PF11337 DUF3139: Protein of u 20.5 37 0.0008 22.9 0.2 34 70-103 47-80 (85)
No 1
>PF01085 HH_signal: Hedgehog amino-terminal signalling domain; InterPro: IPR000320 This domain identifies a group of sequences which belong to the MEROPS peptidase family C46 (clan CH). The type example is the hedgehog protein from Drosophila melanogaster (Fruit fly) which self-processes by a one-time cysteine dependent self cleavage. Hedgehog is a family of secreted signal molecules required for embryonic cell differentiation. members of this family are composed of two domains. These proteins are autocatalytically cleaved by the C-terminal domain IPR001767 from INTERPRO. This family is the N-terminal domain that is responsible for both local and long-range signalling activities. The structure of this domain is known [] and reveals a tetrahedrally coordinated zinc ion that appears to be structurally analogous to the zinc coordination sites of zinc hydrolases, such as thermolysin and carboxypeptidase A. This putative catalytic site represents a distinct activity from the autoprocessing activity that resides in the carboxy-terminal domain.; GO: 0007267 cell-cell signaling, 0007275 multicellular organismal development; PDB: 2WFR_A 3N1Q_B 3N1G_B 2WFQ_A 2WG3_A 3MXW_A 3M1N_B 3HO5_H 3K7H_B 3N1O_B ....
Probab=100.00 E-value=8e-55 Score=335.83 Aligned_cols=87 Identities=71% Similarity=1.134 Sum_probs=57.8
Q ss_pred cCCCCCCCCCCCCCCCccccccccccCCCCCccccCCCCCCCcccccCCccccccccCCCCCeEEecCCCCCchhhhHH-
Q psy4361 33 CGPGGKSGRRRYDRYKKITPLVYKQHVPNVSENTLTASGHSEGRISRDDKRFRDLIPNYNQDIIFKDDEGTGADRLMTQ- 111 (122)
Q Consensus 33 CGPGRg~Grrr~pr~~kltPLv~kQ~vPnvsE~TlGASG~~EGkI~R~s~rFkeLvpNyNpDIiFKDEE~TGADRlMTq- 111 (122)
||||||+|+|| || +|+||+||||||||||||+||||++||+|+|+|++|++|||||||||||+|||+|||||+|||
T Consensus 1 Cgpgrg~g~r~-~r--kl~Plv~kq~vPnvsEntlgASG~~eg~I~R~s~rFk~Lv~N~N~dIiFkDEE~tgadR~MTkR 77 (160)
T PF01085_consen 1 CGPGRGYGRRR-PR--KLTPLVFKQHVPNVSENTLGASGPSEGRITRNSPRFKELVPNYNPDIIFKDEEGTGADRLMTKR 77 (160)
T ss_dssp -SS-TTSSS-S-----------TT-EESSS-TTSTTTT--------TTSGGGGG-EE---TTEEE--TTSSSGGGEE-HH
T ss_pred CCCCCCCCCCC-CC--ccccceeeccCCCCcccccCCcCccCCcccCCCcccccCeecCCCceEeeccccCCCcccchHH
Confidence 99999999887 88 999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhccccCC
Q psy4361 112 LKNKMPHYADS 122 (122)
Q Consensus 112 CKdKLn~LAis 122 (122)
||||||+|||+
T Consensus 78 ckdkL~~La~~ 88 (160)
T PF01085_consen 78 CKDKLNTLAIS 88 (160)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999999984
No 2
>KOG3638|consensus
Probab=97.88 E-value=9.2e-06 Score=69.06 Aligned_cols=90 Identities=23% Similarity=0.162 Sum_probs=75.1
Q ss_pred HhhccccccCCCCCC-CCCCCCCCCccccccccccCCCCCccccCCCCCCCcccccCCccccccccCCCCCeEEecCCCC
Q psy4361 25 IVLRESMCCGPGGKS-GRRRYDRYKKITPLVYKQHVPNVSENTLTASGHSEGRISRDDKRFRDLIPNYNQDIIFKDDEGT 103 (122)
Q Consensus 25 l~~~~~~~CGPGRg~-Grrr~pr~~kltPLv~kQ~vPnvsE~TlGASG~~EGkI~R~s~rFkeLvpNyNpDIiFKDEE~T 103 (122)
.+......|.+.... +.++.. ...|+.|.+..++++|....+| .+.++.+.+..+....| |.|++|++.|..
T Consensus 32 ~~~~~~~~~~g~~~~~~~~~~~---~~~~~~~~~~~a~c~~e~~s~s--~~~~~~wvgg~~~~~~~--~~d~~~~cc~~~ 104 (414)
T KOG3638|consen 32 DFSRSAQKPDGFLRDKDIRRYS---PLGPPIYVQQLAECPEEFSSAS--CEKKNQWVGGIFPQDDP--NQDLILKCCEYE 104 (414)
T ss_pred ccccccccccceeecCCccccc---CCCCccccccccCCCcccCccc--ccccccccCcccccCCC--cchhhhhhhccc
Confidence 445567778887774 333332 4779999999999999999888 77778888888888888 999999999999
Q ss_pred CchhhhHH-HHhhhccccCC
Q psy4361 104 GADRLMTQ-LKNKMPHYADS 122 (122)
Q Consensus 104 GADRlMTq-CKdKLn~LAis 122 (122)
|++ +|++ |+.+++++||+
T Consensus 105 ~l~-~~~d~g~~~v~~ge~~ 123 (414)
T KOG3638|consen 105 GLR-FSTDRGVATVSAGEIV 123 (414)
T ss_pred cch-hhhhhhhccccCccEE
Confidence 999 9999 99999999975
No 3
>PF05032 Spo12: Spo12 family; InterPro: IPR007727 This family of proteins includes Spo12 from Saccharomyces cerevisiae P17123 from SWISSPROT. The Spo12 protein plays a regulatory role in two of the most fundamental processes of biology, mitosis and meiosis, and yet its biochemical function remains elusive []. Spo12 is a nuclear protein []. Spo12 is a component of the FEAR (Cdc fourteen early anaphase release) regulatory network, which promotes Cdc14 release from the nucleolus during early anaphase []. The FEAR network is comprised of the polo kinase Cdc5, the separase Esp1, the kinetochore-associated protein Slk19, and Spo12 [].
Probab=77.84 E-value=0.66 Score=28.71 Aligned_cols=15 Identities=20% Similarity=0.344 Sum_probs=13.2
Q ss_pred chhhhHHHHhhhccc
Q psy4361 105 ADRLMTQLKNKMPHY 119 (122)
Q Consensus 105 ADRlMTqCKdKLn~L 119 (122)
.|+||+.|-.|||..
T Consensus 4 TD~imSPct~KLn~~ 18 (35)
T PF05032_consen 4 TDNIMSPCTQKLNAH 18 (35)
T ss_pred cccccChHHHHHHHH
Confidence 599999999999863
No 4
>KOG3340|consensus
Probab=49.93 E-value=6.8 Score=35.28 Aligned_cols=25 Identities=28% Similarity=0.601 Sum_probs=21.4
Q ss_pred ccccccccCCCCCeEEecCCCCCch
Q psy4361 82 KRFRDLIPNYNQDIIFKDDEGTGAD 106 (122)
Q Consensus 82 ~rFkeLvpNyNpDIiFKDEE~TGAD 106 (122)
|+--|||.+|||+||.-|-|..-.|
T Consensus 200 pem~eLVtkY~PeviWSDGew~~pd 224 (454)
T KOG3340|consen 200 PEMYELVTKYNPEVIWSDGEWEAPD 224 (454)
T ss_pred HHHHHHHHhcCCceEeeCCCcCCch
Confidence 5667999999999999999987655
No 5
>PHA00725 hypothetical protein
Probab=40.58 E-value=13 Score=26.94 Aligned_cols=14 Identities=43% Similarity=0.657 Sum_probs=12.0
Q ss_pred CCCcccccCCcccc
Q psy4361 72 HSEGRISRDDKRFR 85 (122)
Q Consensus 72 ~~EGkI~R~s~rFk 85 (122)
.+-|+|.||+|||+
T Consensus 9 ~~~~~IrrnsprfR 22 (81)
T PHA00725 9 TSPKNIRRNSPRFR 22 (81)
T ss_pred CCccccccCCCccc
Confidence 35689999999997
No 6
>PF15086 UPF0542: Uncharacterised protein family UPF0542
Probab=36.97 E-value=22 Score=25.32 Aligned_cols=17 Identities=47% Similarity=0.774 Sum_probs=12.4
Q ss_pred hhHHHHHHHHhhhhhhh
Q psy4361 2 EKQEKKKKKKRKKKEKV 18 (122)
Q Consensus 2 ~~~~~~~~~~~~~~~~~ 18 (122)
|+||+.+|+|.|+.+.+
T Consensus 49 e~~ere~K~k~Kr~~~i 65 (74)
T PF15086_consen 49 EKEEREKKKKAKRQANI 65 (74)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 67888888887776653
No 7
>KOG2756|consensus
Probab=36.28 E-value=14 Score=32.56 Aligned_cols=14 Identities=29% Similarity=0.688 Sum_probs=12.1
Q ss_pred cccCCCCCeEEecC
Q psy4361 87 LIPNYNQDIIFKDD 100 (122)
Q Consensus 87 LvpNyNpDIiFKDE 100 (122)
++.||||||||--|
T Consensus 125 ~i~l~sPdiiflQE 138 (349)
T KOG2756|consen 125 YLALYSPDVIFLQE 138 (349)
T ss_pred HHHhcCCCEEEEee
Confidence 68999999999844
No 8
>KOG2422|consensus
Probab=35.57 E-value=11 Score=35.65 Aligned_cols=15 Identities=73% Similarity=0.888 Sum_probs=9.6
Q ss_pred hhHHHHHHHHhhhhh
Q psy4361 2 EKQEKKKKKKRKKKE 16 (122)
Q Consensus 2 ~~~~~~~~~~~~~~~ 16 (122)
.|+.+|||+|||||+
T Consensus 88 sk~k~KKK~krkkKk 102 (665)
T KOG2422|consen 88 SKNKKKKKKKRKKKK 102 (665)
T ss_pred hccccchhhhhcccc
Confidence 356667777776664
No 9
>PF07359 LEAP-2: Liver-expressed antimicrobial peptide 2 precursor (LEAP-2); InterPro: IPR009955 This family consists of several mammalian liver-expressed antimicrobial peptide 2 (LEAP-2) sequences. LEAP-2 is a cysteine-rich, and cationic protein. LEAP-2 contains a core structure with two disulphide bonds formed by cysteine residues in relative 1-3 and 2-4 positions. LEAP-2 is synthesised as a 77-residue precursor, which is predominantly expressed in the liver and highly conserved among mammals. The largest native LEAP-2 form of 40 amino acid residues is generated from the precursor at a putative cleavage site for a furin-like endoprotease. In contrast to smaller LEAP-2 variants, this peptide exhibits dose-dependent antimicrobial activity against selected microbial model organisms []. The exact function of this family is unclear.; GO: 0042742 defense response to bacterium; PDB: 2L1Q_A.
Probab=34.06 E-value=14 Score=26.51 Aligned_cols=31 Identities=35% Similarity=0.427 Sum_probs=8.6
Q ss_pred CCCCCCCCCCCCCCccccccccccCCCCCccccCCCCCC
Q psy4361 35 PGGKSGRRRYDRYKKITPLVYKQHVPNVSENTLTASGHS 73 (122)
Q Consensus 35 PGRg~Grrr~pr~~kltPLv~kQ~vPnvsE~TlGASG~~ 73 (122)
|-.....||..| +|||-- -||=.-+|||=+-
T Consensus 26 p~~~s~~rr~~R---MTP~WR-----~~s~kP~GAsCrd 56 (77)
T PF07359_consen 26 PELSSAKRRRAR---MTPFWR-----GVSLKPIGASCRD 56 (77)
T ss_dssp ------------------TTS-----S-SSB-TTSB-SS
T ss_pred CchhHHhHhhhc---cChHHH-----hhcCCcCcchhcc
Confidence 444445555444 999854 4677778887653
No 10
>PF00739 X: Trans-activation protein X; InterPro: IPR000236 The Hepatitis B virus (HBV) X gene shares sequences with both the polymerase and precore genes, carries several regulatory signals critical to the replicative cycle, and its product has a transactivating function []. The transactivating function is probably associated with a tumourigenic potential of HBx, since x gene sequences, encoding functional HBx, have been repeatedly found integrated into the genome of liver carcinoma cells [].; GO: 0019079 viral genome replication; PDB: 3I7H_B 3I7K_B.
Probab=33.37 E-value=14 Score=29.02 Aligned_cols=41 Identities=41% Similarity=0.541 Sum_probs=2.8
Q ss_pred cccCCCCCCCcccccCCccccccccCCCCCeEEecCCCCCch-hhhHH----HHhhh
Q psy4361 65 NTLTASGHSEGRISRDDKRFRDLIPNYNQDIIFKDDEGTGAD-RLMTQ----LKNKM 116 (122)
Q Consensus 65 ~TlGASG~~EGkI~R~s~rFkeLvpNyNpDIiFKDEE~TGAD-RlMTq----CKdKL 116 (122)
.|||-|+.+.- +| .-|=-|-+|||=|.-|.+ |||.- |+-||
T Consensus 96 RtLGls~mstt----------dl-eaYfKDcvfk~WEElGee~RL~iFVLGGCRHKl 141 (142)
T PF00739_consen 96 RTLGLSAMSTT----------DL-EAYFKDCVFKDWEELGEEIRLMIFVLGGCRHKL 141 (142)
T ss_dssp HHHS-----------------------------------------------------
T ss_pred ccccccccchH----------HH-HHHHHHHHHHHHhhhcccceEEEEEecCccccc
Confidence 47777777632 23 457779999997777765 99985 88876
No 11
>PF14582 Metallophos_3: Metallophosphoesterase, calcineurin superfamily; PDB: 1UF3_B 2YVT_A.
Probab=29.93 E-value=16 Score=31.06 Aligned_cols=38 Identities=32% Similarity=0.462 Sum_probs=28.4
Q ss_pred cccccccCCCCCccccCCCCCCCcccccCCccccccccCCCCCeEEe
Q psy4361 52 PLVYKQHVPNVSENTLTASGHSEGRISRDDKRFRDLIPNYNQDIIFK 98 (122)
Q Consensus 52 PLv~kQ~vPnvsE~TlGASG~~EGkI~R~s~rFkeLvpNyNpDIiFK 98 (122)
|+++-=|.|- . ..+|.+.-+|..+.+|+.+|||+|++-
T Consensus 175 r~IlLfhtpP-------d--~~kg~~h~GS~~V~dlIk~~~P~ivl~ 212 (255)
T PF14582_consen 175 RKILLFHTPP-------D--LHKGLIHVGSAAVRDLIKTYNPDIVLC 212 (255)
T ss_dssp EEEEEESS-B-------T--BCTCTBTTSBHHHHHHHHHH--SEEEE
T ss_pred cEEEEEecCC-------c--cCCCcccccHHHHHHHHHhcCCcEEEe
Confidence 5555566665 1 567889999999999999999999997
No 12
>smart00812 Alpha_L_fucos Alpha-L-fucosidase. O-Glycosyl hydrolases (EC 3.2.1.-) are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site PUBMED:. Because the fold of proteins is better conserved than their sequences, some of the families can be grouped in 'clans'. Family 29 encompasses alpha-L-fucosidases, which is a lysosomal enzyme responsible for hydrolyzing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Deficiency of alpha-L-fucosidase results in the lysosomal storage disease fucosidosis.
Probab=29.51 E-value=20 Score=30.63 Aligned_cols=20 Identities=25% Similarity=0.680 Sum_probs=17.1
Q ss_pred ccccccccCCCCCeEEecCC
Q psy4361 82 KRFRDLIPNYNQDIIFKDDE 101 (122)
Q Consensus 82 ~rFkeLvpNyNpDIiFKDEE 101 (122)
++.+||+.||.|||++-|=.
T Consensus 183 ~Ql~ELit~Ygpd~lWfD~~ 202 (384)
T smart00812 183 PQLRELVTRYKPDLLWFDGG 202 (384)
T ss_pred HHHHHHHhcCCCceEEEeCC
Confidence 45679999999999999954
No 13
>COG0587 DnaE DNA polymerase III, alpha subunit [DNA replication, recombination, and repair]
Probab=29.03 E-value=22 Score=35.21 Aligned_cols=14 Identities=29% Similarity=0.489 Sum_probs=10.9
Q ss_pred cccccCCCCCCCCC
Q psy4361 29 ESMCCGPGGKSGRR 42 (122)
Q Consensus 29 ~~~~CGPGRg~Grr 42 (122)
.+--||||||++..
T Consensus 353 ~gI~vGPGRGSaAG 366 (1139)
T COG0587 353 NGIPVGPGRGSAAG 366 (1139)
T ss_pred CCCccCCCCcchHH
Confidence 45569999999763
No 14
>PF01120 Alpha_L_fucos: Alpha-L-fucosidase; InterPro: IPR000933 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Family 29 (GH29 from CAZY) encompasses alpha-L-fucosidases (3.2.1.51 from EC) [], which is a lysosomal enzyme responsible for hydrolyzing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Alpha-L-fucosidase is responsible for hydrolysing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Fucosylated glycoconjugates are involved in numerous biological events, making alpha-l-fucosidases, the enzymes responsible for their processing, critically important. Deficiency in alpha-l-fucosidase activity is associated with fucosidosis, a lysosomal storage disorder characterised by rapid neurodegeneration, resulting in severe mental and motor deterioration []. The enzyme is a hexamer and displays a two-domain fold, composed of a catalytic (beta/alpha)(8)-like domain and a C-terminal beta-sandwich domain []. Drosophila melanogaster spermatozoa contains an alpha-l-fucosidase that might be involved in fertilisation by interacting with alpha-l-fucose residues on the micropyle of the eggshell []. In human sperm, membrane-associated alpha-l-fucosidase is stable for extended periods of time, which is made possible by membrane domains and compartmentalisation. These help preserve protein integrity []. ; GO: 0004560 alpha-L-fucosidase activity, 0005975 carbohydrate metabolic process; PDB: 3EYP_B 2ZX6_A 2ZWY_B 2ZX8_B 2WSP_A 2ZXA_A 2ZWZ_B 1ODU_B 1HL9_A 2ZX5_B ....
Probab=28.09 E-value=16 Score=30.08 Aligned_cols=22 Identities=27% Similarity=0.576 Sum_probs=18.5
Q ss_pred ccccccccCCCCCeEEecCCCC
Q psy4361 82 KRFRDLIPNYNQDIIFKDDEGT 103 (122)
Q Consensus 82 ~rFkeLvpNyNpDIiFKDEE~T 103 (122)
+..+||+.||.||+|+-|--..
T Consensus 196 ~ql~EL~~~Y~~d~lWfDg~~~ 217 (346)
T PF01120_consen 196 AQLRELLTRYKPDILWFDGGWP 217 (346)
T ss_dssp HHHHHHHHCSTESEEEEESTTS
T ss_pred HHHHHHHhCCCcceEEecCCCC
Confidence 4567999999999999997654
No 15
>KOG2403|consensus
Probab=27.29 E-value=50 Score=31.28 Aligned_cols=74 Identities=18% Similarity=0.314 Sum_probs=44.7
Q ss_pred HHHHhhccccccCCCCCCCCCCCCCCCccccccccccCCCCCccccCCCCCCCcccccCCcccccccc--------CCCC
Q psy4361 22 VMCIVLRESMCCGPGGKSGRRRYDRYKKITPLVYKQHVPNVSENTLTASGHSEGRISRDDKRFRDLIP--------NYNQ 93 (122)
Q Consensus 22 ~~~l~~~~~~~CGPGRg~Grrr~pr~~kltPLv~kQ~vPnvsE~TlGASG~~EGkI~R~s~rFkeLvp--------NyNp 93 (122)
.+.+-...+.+||||++..-=.- .-+.|.+.+|+.|++||.. +++--. -|++.-.--...|+ |||-
T Consensus 340 s~tmei~~grg~g~~kd~~~l~l---~h~p~e~~~~~~p~is~ta-~i~agv--dVt~epiPv~ptvhy~~ggi~t~~~g 413 (642)
T KOG2403|consen 340 SMTMEIREGRGVGPNKDHVYLQL---SHLPPEPLKERLPGISETA-AIFAGV--DVTKEPIPVLPTVHYNMGGIPTNYNG 413 (642)
T ss_pred hhhhhhHhhcccCCCCCccchhh---ccCChhhhcccCCCcchhh-hhHhhc--CccccccccCCCcccccCccccCCcc
Confidence 34455567889999998762111 3477889999999999941 222111 35554444344332 5566
Q ss_pred CeEEecCC
Q psy4361 94 DIIFKDDE 101 (122)
Q Consensus 94 DIiFKDEE 101 (122)
-.+..|++
T Consensus 414 ~~~~~~~~ 421 (642)
T KOG2403|consen 414 EVLTIREV 421 (642)
T ss_pred ceeeeccc
Confidence 66677776
No 16
>PF10184 DUF2358: Uncharacterized conserved protein (DUF2358); InterPro: IPR018790 This entry represents a family of conserved proteins. The function is unknown.
Probab=26.75 E-value=40 Score=23.60 Aligned_cols=19 Identities=37% Similarity=0.660 Sum_probs=13.1
Q ss_pred CCCCCeEEecCCC--CCchhh
Q psy4361 90 NYNQDIIFKDDEG--TGADRL 108 (122)
Q Consensus 90 NyNpDIiFKDEE~--TGADRl 108 (122)
=|.+||+|.|.=. +|-|+.
T Consensus 23 iY~~dv~F~Dp~~~f~g~~~Y 43 (113)
T PF10184_consen 23 IYDEDVVFIDPIVSFKGLDRY 43 (113)
T ss_pred hcCCCeEEECCCCceecHHHH
Confidence 4899999999743 344443
No 17
>PTZ00459 mucin-associated surface protein (MASP); Provisional
Probab=25.86 E-value=40 Score=27.97 Aligned_cols=16 Identities=19% Similarity=0.723 Sum_probs=8.9
Q ss_pred hhhhHHH-Hhhcccccc
Q psy4361 18 VYICVMC-IVLRESMCC 33 (122)
Q Consensus 18 ~~~~~~~-l~~~~~~~C 33 (122)
.++|.|| ||...+.+|
T Consensus 10 LLVCALCVLWCg~gG~~ 26 (291)
T PTZ00459 10 LLVCALCVLWCGAGGRC 26 (291)
T ss_pred HHHHHHHHHhcCCCCCc
Confidence 4567777 443334556
No 18
>PF13837 Myb_DNA-bind_4: Myb/SANT-like DNA-binding domain; PDB: 2EBI_A 2JMW_A.
Probab=24.79 E-value=29 Score=22.18 Aligned_cols=16 Identities=31% Similarity=0.376 Sum_probs=10.0
Q ss_pred CchhhhHHHHhhhccc
Q psy4361 104 GADRLMTQLKNKMPHY 119 (122)
Q Consensus 104 GADRlMTqCKdKLn~L 119 (122)
|-+|--+||++|.++|
T Consensus 48 G~~rt~~qc~~Kw~~L 63 (90)
T PF13837_consen 48 GYNRTPEQCRNKWKNL 63 (90)
T ss_dssp C----HHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHH
Confidence 6677777899998877
No 19
>KOG3190|consensus
Probab=24.75 E-value=19 Score=30.55 Aligned_cols=18 Identities=22% Similarity=0.499 Sum_probs=15.9
Q ss_pred cCCccccccccCCCCCeE
Q psy4361 79 RDDKRFRDLIPNYNQDII 96 (122)
Q Consensus 79 R~s~rFkeLvpNyNpDIi 96 (122)
--||||..|.-++|++++
T Consensus 112 ~rDPRFD~lsG~l~~~~~ 129 (256)
T KOG3190|consen 112 KRDPRFDALSGDLDEECF 129 (256)
T ss_pred ccCcchhhccCccCHHHH
Confidence 358999999999999986
No 20
>PF03343 SART-1: SART-1 family; InterPro: IPR005011 This family of proteins appear to contain a leucine zipper [] and may therefore be a family of transcription factors.; PDB: 3PLV_C 3PLU_D.
Probab=24.62 E-value=25 Score=31.10 Aligned_cols=31 Identities=35% Similarity=0.632 Sum_probs=0.0
Q ss_pred cccCCccccccccCCCCCe--EEecCCCCCchhhhHH
Q psy4361 77 ISRDDKRFRDLIPNYNQDI--IFKDDEGTGADRLMTQ 111 (122)
Q Consensus 77 I~R~s~rFkeLvpNyNpDI--iFKDEE~TGADRlMTq 111 (122)
+.+....|++-..+||||| .++||.| |.||+
T Consensus 549 ~~~~~~~~~~~~~~YkP~V~L~Y~De~G----r~Lt~ 581 (613)
T PF03343_consen 549 YSRPENDFREKEDDYKPDVKLEYKDEFG----RELTP 581 (613)
T ss_dssp -------------------------------------
T ss_pred ccccccchhhhhcccCCceeEEEeCCCC----CCCCH
Confidence 3445566777666999975 6899988 77775
No 21
>PF14330 DUF4387: Domain of unknown function (DUF4387)
Probab=23.79 E-value=22 Score=26.07 Aligned_cols=9 Identities=78% Similarity=1.191 Sum_probs=7.9
Q ss_pred CeEEecCCC
Q psy4361 94 DIIFKDDEG 102 (122)
Q Consensus 94 DIiFKDEE~ 102 (122)
||+|+|+|.
T Consensus 21 DI~F~~~e~ 29 (99)
T PF14330_consen 21 DIIFKDKEA 29 (99)
T ss_pred EEEECCHHH
Confidence 999999884
No 22
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=23.50 E-value=59 Score=29.30 Aligned_cols=24 Identities=38% Similarity=0.554 Sum_probs=18.8
Q ss_pred cccCCCCCeEEecC----------CCCCchhhhH
Q psy4361 87 LIPNYNQDIIFKDD----------EGTGADRLMT 110 (122)
Q Consensus 87 LvpNyNpDIiFKDE----------E~TGADRlMT 110 (122)
|-...-|.|||-|| ++||+||=..
T Consensus 239 lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQ 272 (406)
T COG1222 239 LAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQ 272 (406)
T ss_pred HHhhcCCeEEEEechhhhhcccccCCCCchHHHH
Confidence 45567899999997 8999998443
No 23
>cd01143 YvrC Periplasmic binding protein YvrC. These proteins are predicted to function as initial receptors in ABC transport of metal ions in eubacteria and archaea. They belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains.
Probab=23.20 E-value=26 Score=24.60 Aligned_cols=12 Identities=33% Similarity=0.462 Sum_probs=9.7
Q ss_pred ccccCCCCCeEE
Q psy4361 86 DLIPNYNQDIIF 97 (122)
Q Consensus 86 eLvpNyNpDIiF 97 (122)
|-+-.+||||||
T Consensus 183 E~l~~~~PDvIi 194 (195)
T cd01143 183 EEILKANPDVII 194 (195)
T ss_pred HHHHHhCcCEEe
Confidence 456789999998
No 24
>cd01834 SGNH_hydrolase_like_2 SGNH_hydrolase subfamily. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=22.37 E-value=56 Score=22.43 Aligned_cols=35 Identities=14% Similarity=0.134 Sum_probs=25.0
Q ss_pred CCCccccCCCCCCCcccccCCccccccccCCCCCeEEe
Q psy4361 61 NVSENTLTASGHSEGRISRDDKRFRDLIPNYNQDIIFK 98 (122)
Q Consensus 61 nvsE~TlGASG~~EGkI~R~s~rFkeLvpNyNpDIiFK 98 (122)
++.=..+|-||..-..+. .++...+..++||+|+=
T Consensus 33 ~~~v~n~g~~G~t~~~~~---~~~~~~~~~~~~d~v~l 67 (191)
T cd01834 33 KLTFRNLGWSGDTVSDLA---ARRDRDVLPAKPDVVSI 67 (191)
T ss_pred CcEEEEcccCccchhhhh---hhhhcccccCCCCEEEE
Confidence 455567788887654443 46767777899999986
No 25
>KOG0727|consensus
Probab=22.31 E-value=61 Score=28.87 Aligned_cols=31 Identities=35% Similarity=0.458 Sum_probs=23.4
Q ss_pred cccCCCCCeEEecCC----------CCCchhhhHH-HHhhhc
Q psy4361 87 LIPNYNQDIIFKDDE----------GTGADRLMTQ-LKNKMP 117 (122)
Q Consensus 87 LvpNyNpDIiFKDEE----------~TGADRlMTq-CKdKLn 117 (122)
|....-|.|||-||= -|||||=... .-|-||
T Consensus 243 lakenapsiifideidaiatkrfdaqtgadrevqril~elln 284 (408)
T KOG0727|consen 243 LAKENAPSIIFIDEIDAIATKRFDAQTGADREVQRILIELLN 284 (408)
T ss_pred HHhccCCcEEEeehhhhHhhhhccccccccHHHHHHHHHHHH
Confidence 556678999999984 6899997765 555555
No 26
>cd04502 SGNH_hydrolase_like_7 Members of the SGNH-hydrolase superfamily, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad from other serine hydrolases, but may lack the carboxlic acid.
Probab=21.61 E-value=39 Score=23.55 Aligned_cols=41 Identities=10% Similarity=0.096 Sum_probs=30.5
Q ss_pred ccccCCCCCccccCCCCCCCcccccCCccccccccCCCCCeEEe
Q psy4361 55 YKQHVPNVSENTLTASGHSEGRISRDDKRFRDLIPNYNQDIIFK 98 (122)
Q Consensus 55 ~kQ~vPnvsE~TlGASG~~EGkI~R~s~rFkeLvpNyNpDIiFK 98 (122)
+.+..|.+.-..+|.||..-.-+ -.++.+++..++||+|+=
T Consensus 16 ~~~~~~~~~v~N~Gi~G~~~~~~---~~~~~~~~~~~~p~~vvi 56 (171)
T cd04502 16 LADDLAPLPVVNRGFGGSTLADC---LHYFDRLVLPYQPRRVVL 56 (171)
T ss_pred HHHhCCCCceeecCcccchHHHH---HHHHHhhhccCCCCEEEE
Confidence 45567888889999999864332 245667778889999986
No 27
>PLN02161 beta-amylase
Probab=21.36 E-value=53 Score=30.45 Aligned_cols=15 Identities=33% Similarity=0.691 Sum_probs=12.7
Q ss_pred cCCCCCeEEecCCCC
Q psy4361 89 PNYNQDIIFKDDEGT 103 (122)
Q Consensus 89 pNyNpDIiFKDEE~T 103 (122)
-.-||||.|+|++|.
T Consensus 199 g~~~pDi~ftDr~G~ 213 (531)
T PLN02161 199 GDVNKDIYYRDKNGF 213 (531)
T ss_pred hccCCCceEEcCCCC
Confidence 456999999999985
No 28
>PLN02803 beta-amylase
Probab=21.28 E-value=53 Score=30.54 Aligned_cols=14 Identities=29% Similarity=0.695 Sum_probs=11.6
Q ss_pred CCCCCeEEecCCCC
Q psy4361 90 NYNQDIIFKDDEGT 103 (122)
Q Consensus 90 NyNpDIiFKDEE~T 103 (122)
.-||||.|+|++|.
T Consensus 190 ~~~pDi~ftDr~G~ 203 (548)
T PLN02803 190 SKNPDLVYTDRSGR 203 (548)
T ss_pred hcCCCceEecCCCC
Confidence 45899999999886
No 29
>cd05778 DNA_polB_zeta_exo inactive DEDDy 3'-5' exonuclease domain of eukaryotic DNA polymerase zeta, a family-B DNA polymerase. The 3'-5' exonuclease domain of eukaryotic DNA polymerase zeta. DNA polymerase zeta is a family-B DNA polymerase which is distantly related to DNA polymerase delta. It plays a major role in translesion replication and the production of either spontaneous or induced mutations. In addition, DNA polymerase zeta also appears to be involved in somatic hypermutability in B lymphocytes, an important element for the production of high affinity antibodies in response to an antigen. The catalytic subunit contains both polymerase and 3'-5' exonuclease domains, but only exhibits polymerase activity. The DnaQ-like 3'-5' exonuclease domain contains three sequence motifs termed ExoI, ExoII and ExoIII, without the four conserved acidic residues that are crucial for metal binding and catalysis.
Probab=20.84 E-value=26 Score=27.41 Aligned_cols=16 Identities=25% Similarity=0.540 Sum_probs=14.1
Q ss_pred cccccccCCCCCeEEe
Q psy4361 83 RFRDLIPNYNQDIIFK 98 (122)
Q Consensus 83 rFkeLvpNyNpDIiFK 98 (122)
.|-+++..+|||||.-
T Consensus 87 ~f~~~i~~~DPDii~G 102 (231)
T cd05778 87 ELIDLVRRFDPDILSG 102 (231)
T ss_pred HHHHHHHHhCCCEEEE
Confidence 5889999999999964
No 30
>PF11337 DUF3139: Protein of unknown function (DUF3139); InterPro: IPR021486 This family of proteins with unknown function appears to be restricted to Firmicutes.
Probab=20.51 E-value=37 Score=22.87 Aligned_cols=34 Identities=21% Similarity=0.380 Sum_probs=24.1
Q ss_pred CCCCCcccccCCccccccccCCCCCeEEecCCCC
Q psy4361 70 SGHSEGRISRDDKRFRDLIPNYNQDIIFKDDEGT 103 (122)
Q Consensus 70 SG~~EGkI~R~s~rFkeLvpNyNpDIiFKDEE~T 103 (122)
-|-.|-.|..-...|.-....|-..++||||-+.
T Consensus 47 ~gy~e~~I~~i~~~~~~k~g~yy~~V~fKDeP~~ 80 (85)
T PF11337_consen 47 QGYKESDIKSIKIKYDYKKGGYYKEVVFKDEPNY 80 (85)
T ss_pred cCCcHHHhhhhhheeecccCceEEEEEEecCCCc
Confidence 3555567766665565555678889999999774
Done!