Query psy4361
Match_columns 122
No_of_seqs 76 out of 78
Neff 2.4
Searched_HMMs 29240
Date Fri Aug 16 23:35:00 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4361.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/4361hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3k7i_B IHH, HHG-2, indian hedg 100.0 2.7E-50 9.1E-55 315.5 3.7 91 30-122 10-102 (187)
2 3n1g_B Desert hedgehog protein 100.0 4E-46 1.4E-50 286.2 2.5 90 30-121 1-93 (170)
3 2ibg_E Protein hedgehog, GH039 100.0 3E-41 1E-45 256.2 2.2 73 50-122 1-74 (150)
4 3dtp_E RLC, myosin regulatory 73.3 2 6.8E-05 29.4 2.3 16 2-17 5-20 (196)
5 3hd7_B Syntaxin-1A; membrane p 45.8 8.5 0.00029 26.3 1.5 29 6-34 77-105 (109)
6 2zxd_A Alpha-L-fucosidase, put 30.2 7.1 0.00024 32.7 -1.1 20 83-102 208-227 (455)
7 4b8y_A FHUD2; transport protei 27.9 32 0.0011 24.8 2.2 25 86-110 206-230 (277)
8 4fcu_A 3-deoxy-manno-octuloson 22.7 9.7 0.00033 28.6 -1.5 73 35-110 7-81 (253)
9 2wvv_A Alpha-L-fucosidase; alp 22.0 15 0.00052 30.4 -0.6 21 82-102 177-198 (450)
10 1qjw_A CEL6A (Y169F), cellobio 19.5 70 0.0024 26.7 2.9 61 32-96 285-365 (365)
No 1
>3k7i_B IHH, HHG-2, indian hedgehog protein; alpha+beta sandwich, autocatalytic cleavage, cell membrane, developmental protein, disease mutation; 1.44A {Homo sapiens} PDB: 3k7g_B 3k7j_B 3k7h_B 3n1f_A 3n1m_B 3n1o_A 3n1p_B 3m1n_A 3mxw_A 3ho5_H 1vhh_A 3d1m_A 3n1r_A 2wg4_A 2wfx_A 2wfq_A 2wfr_A 2wg3_A*
Probab=100.00 E-value=2.7e-50 Score=315.53 Aligned_cols=91 Identities=59% Similarity=0.944 Sum_probs=74.6
Q ss_pred ccccCCCCCCC-CCCCCCCCccccccccccCCCCCccccCCCCCCCcccccCCccccccccCCCCCeEEecCCCCCchhh
Q psy4361 30 SMCCGPGGKSG-RRRYDRYKKITPLVYKQHVPNVSENTLTASGHSEGRISRDDKRFRDLIPNYNQDIIFKDDEGTGADRL 108 (122)
Q Consensus 30 ~~~CGPGRg~G-rrr~pr~~kltPLv~kQ~vPnvsE~TlGASG~~EGkI~R~s~rFkeLvpNyNpDIiFKDEE~TGADRl 108 (122)
-.+|||||..| +||+|| +||||||||||||+|||||||||++||+|+|+|++|++|||||||||||+|||||||||+
T Consensus 10 ~~~~~~~~~~g~~~~~~r--~~tplv~kq~vPn~sE~tlgASG~~eg~I~r~~~~Fk~Lv~n~n~dIvF~deE~tgadR~ 87 (187)
T 3k7i_B 10 HGSCGPGRVVGSRRRPPR--KLVPLAYKQFSPNVPEKTLGASGRYEGKIARSSERFKELTPNYNPDIIFKDEENTGADRL 87 (187)
T ss_dssp ----------------CC--CCCCCCTTCEESSSCTTSTTTTCCCCCCCCTTSGGGGGCEECCCTTEEECCTTSSSGGGE
T ss_pred CCCCCCccccCCCCCCCC--cccceeecccCCCCCccccCCcCcccCcccCCCcccccccccCCCceEecCccCCCcchh
Confidence 45799999886 555677 999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHH-HHhhhccccCC
Q psy4361 109 MTQ-LKNKMPHYADS 122 (122)
Q Consensus 109 MTq-CKdKLn~LAis 122 (122)
||| |++|||+||++
T Consensus 88 Mt~Rc~~kL~~La~~ 102 (187)
T 3k7i_B 88 MTQRCKDRLNSLAIS 102 (187)
T ss_dssp ECHHHHHHHHHHHHH
T ss_pred hCHHHHHHHHHHHHH
Confidence 999 99999999974
No 2
>3n1g_B Desert hedgehog protein; binding sites, calcium, cell adhesion molecules, cell cycle cell LINE, conserved sequence, fibronectins; 1.90A {Homo sapiens} SCOP: d.65.1.2 PDB: 3n1q_B
Probab=100.00 E-value=4e-46 Score=286.18 Aligned_cols=90 Identities=59% Similarity=0.969 Sum_probs=71.1
Q ss_pred ccccCCCCCC-CCCCCCCCCc-cccccccccCCCCCccccCCCCCCCcccccCCccccccccCCCCCeEEecCCCCCchh
Q psy4361 30 SMCCGPGGKS-GRRRYDRYKK-ITPLVYKQHVPNVSENTLTASGHSEGRISRDDKRFRDLIPNYNQDIIFKDDEGTGADR 107 (122)
Q Consensus 30 ~~~CGPGRg~-Grrr~pr~~k-ltPLv~kQ~vPnvsE~TlGASG~~EGkI~R~s~rFkeLvpNyNpDIiFKDEE~TGADR 107 (122)
+.+||||||+ |+||.|| | ||||+|||||||+||+|+||||++||+|+|+|++|++||+||||||||+||||||+||
T Consensus 1 ~~~c~~g~~~~~~~~~~~--~~~~pl~~~~~~P~~~E~t~~asG~~~~~I~r~~~~f~~Lv~~~n~divFrDee~tg~~~ 78 (170)
T 3n1g_B 1 GSGPGPGRGPVGRRRYAR--KQLVPLLYKQFVPGVPERTLGASGPAEGRVARGSERFRDLVPNYNPDIIFKDEENSGADR 78 (170)
T ss_dssp ---------------------CCCCCCTTCEESSSCTTSTTTTCCCCCCCCTTSHHHHTCEECCCTTEEECCTTSSSGGG
T ss_pred CCCCCCCCCCCCCCCCCc--cccccccccccCCCCCcccccCcCCccccccCCCHhhhhccccCCCCcEEecccccCCcc
Confidence 4689999999 9999999 8 9999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHH-HHhhhccccC
Q psy4361 108 LMTQ-LKNKMPHYAD 121 (122)
Q Consensus 108 lMTq-CKdKLn~LAi 121 (122)
.||+ |.|+|+.||+
T Consensus 79 ~Md~rl~d~L~~L~~ 93 (170)
T 3n1g_B 79 LMTERCKERVNALAI 93 (170)
T ss_dssp EECHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHH
Confidence 9999 9999999985
No 3
>2ibg_E Protein hedgehog, GH03927P; IHOG, fibronectin type III, protein binding; 2.20A {Drosophila melanogaster} SCOP: d.65.1.2
Probab=100.00 E-value=3e-41 Score=256.19 Aligned_cols=73 Identities=58% Similarity=0.911 Sum_probs=63.8
Q ss_pred cccccccccCCCCCccccCCCCCCCcccccCCccccccccCCCCCeEEecCCCCCchhhhHH-HHhhhccccCC
Q psy4361 50 ITPLVYKQHVPNVSENTLTASGHSEGRISRDDKRFRDLIPNYNQDIIFKDDEGTGADRLMTQ-LKNKMPHYADS 122 (122)
Q Consensus 50 ltPLv~kQ~vPnvsE~TlGASG~~EGkI~R~s~rFkeLvpNyNpDIiFKDEE~TGADRlMTq-CKdKLn~LAis 122 (122)
++||+|||||||+||+||||||++||+|+|+|++|++||+||||||||+|||||||||+||| ||+|||+||++
T Consensus 1 ~~pl~~~q~~P~~~E~t~~AsG~~~~~I~r~~~~fk~Lv~n~n~dIvF~dEe~~g~dR~MT~R~k~kL~~La~~ 74 (150)
T 2ibg_E 1 LYPLVLKQTIPNLSEYTNSASGPLEGVIRRDSPKFKDLVPNYNRDILFRDEEGTGADRLMSKRCKEKLNVLAYS 74 (150)
T ss_dssp -CCCCTTCEESSSCTTSTTTTCCCCCCCCTTSGGGGGCEECCCTTEEECC-------CEECHHHHHHHHHHHHH
T ss_pred CCcccccccCCCCCcccccCcCcccccccCCChhhhcccccCCCCcEecCCCCCCcchHHHHHHHHHHHHHHHH
Confidence 68999999999999999999999999999999999999999999999999999999999999 99999999974
No 4
>3dtp_E RLC, myosin regulatory light chain; muscle protein, smooth muscle, myosin subfragment 2, heavy meromyosin, essential light chain; 20.00A {Avicularia avicularia}
Probab=73.27 E-value=2 Score=29.43 Aligned_cols=16 Identities=63% Similarity=0.823 Sum_probs=9.8
Q ss_pred hhHHHHHHHHhhhhhh
Q psy4361 2 EKQEKKKKKKRKKKEK 17 (122)
Q Consensus 2 ~~~~~~~~~~~~~~~~ 17 (122)
||+|+|+|+|.+.|+-
T Consensus 5 ~~~~~~~k~~~~~k~e 20 (196)
T 3dtp_E 5 EKKEKKKKSKKKAEEE 20 (196)
T ss_dssp HHHHTTSHHHHSSHHH
T ss_pred ccccccccchhhhhcc
Confidence 5777776665555543
No 5
>3hd7_B Syntaxin-1A; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_B 3ipd_B
Probab=45.75 E-value=8.5 Score=26.31 Aligned_cols=29 Identities=28% Similarity=0.409 Sum_probs=11.8
Q ss_pred HHHHHHhhhhhhhhhhHHHHhhccccccC
Q psy4361 6 KKKKKKRKKKEKVYICVMCIVLRESMCCG 34 (122)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~l~~~~~~~CG 34 (122)
+-+|+.|||+--.++|++++++..+..+|
T Consensus 77 ~yqk~~rkk~~i~l~~~~i~~~i~~~~~~ 105 (109)
T 3hd7_B 77 KYQSKARRKKIMIIICCVILGIIIASTIG 105 (109)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHhccCcceehHHHHHHHHHHHHHHhc
Confidence 34445555543333333333332334444
No 6
>2zxd_A Alpha-L-fucosidase, putative; TIM barrel, hydrolase; HET: ZXD; 2.15A {Thermotoga maritima} PDB: 2zwy_A* 2zx5_A* 2zx6_A* 2zx7_A* 2zwz_A* 2zx9_A* 2zxa_A* 2zxb_A* 2zx8_A* 1hl9_A* 1hl8_A* 1odu_A* 2wsp_A*
Probab=30.24 E-value=7.1 Score=32.68 Aligned_cols=20 Identities=20% Similarity=0.376 Sum_probs=17.1
Q ss_pred cccccccCCCCCeEEecCCC
Q psy4361 83 RFRDLIPNYNQDIIFKDDEG 102 (122)
Q Consensus 83 rFkeLvpNyNpDIiFKDEE~ 102 (122)
+.+||+.||.|||||-|-+.
T Consensus 208 Ql~ELlt~Y~pd~lWfDg~~ 227 (455)
T 2zxd_A 208 QVMELVDLYLPDVLWNDMGW 227 (455)
T ss_dssp HHHHHHHHHCCSEEEEESCC
T ss_pred HHHHHHhhcCCcEEEECCCC
Confidence 45899999999999999654
No 7
>4b8y_A FHUD2; transport protein-siderophore complex, transport protein, VA siderophore, class III solute binding, inhibitor protein (S; HET: AHO; 1.90A {Staphylococcus aureus subsp}
Probab=27.86 E-value=32 Score=24.79 Aligned_cols=25 Identities=24% Similarity=0.355 Sum_probs=16.5
Q ss_pred ccccCCCCCeEEecCCCCCchhhhH
Q psy4361 86 DLIPNYNQDIIFKDDEGTGADRLMT 110 (122)
Q Consensus 86 eLvpNyNpDIiFKDEE~TGADRlMT 110 (122)
|-+..+|||+||-...+...+.+++
T Consensus 206 E~l~~~~pDvI~~~~~~~~~~~l~~ 230 (277)
T 4b8y_A 206 EEIEKYAGDYIVSTSEGKPTPGYES 230 (277)
T ss_dssp GGGGGGCCSEEEESBTTSCCCGGGS
T ss_pred HHHHHhcCCEEEEeCCCcchhhhhc
Confidence 3445579999998765544555554
No 8
>4fcu_A 3-deoxy-manno-octulosonate cytidylyltransferase; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.90A {Acinetobacter baumannii} PDB: 3pol_A
Probab=22.68 E-value=9.7 Score=28.56 Aligned_cols=73 Identities=19% Similarity=0.324 Sum_probs=42.6
Q ss_pred CCCCCCCCCCCCCCccccccccccCCCCC-ccccCCCCCCCcccccCCccccccccCCCCCeEEe-cCCCCCchhhhH
Q psy4361 35 PGGKSGRRRYDRYKKITPLVYKQHVPNVS-ENTLTASGHSEGRISRDDKRFRDLIPNYNQDIIFK-DDEGTGADRLMT 110 (122)
Q Consensus 35 PGRg~Grrr~pr~~kltPLv~kQ~vPnvs-E~TlGASG~~EGkI~R~s~rFkeLvpNyNpDIiFK-DEE~TGADRlMT 110 (122)
|-+|.|+|=+++ -|.|+-=|-.+=.+- |.- -++|..+=-|.-++++..+.+..++.++++. .++-+|.||+..
T Consensus 7 lA~G~stR~~~K--~L~~i~GkPli~~~i~~~~-~~~~~~~vvVvt~~~~i~~~~~~~g~~v~~~~~~~~~Gt~~i~~ 81 (253)
T 4fcu_A 7 PARFSSSRLPGK--PLLLIHDRPMILRVVDQAK-KVEGFDDLCVATDDERIAEICRAEGVDVVLTSADHPSGTDRLSE 81 (253)
T ss_dssp ECCSCCTTSTTG--GGSEETTEEHHHHHHHHHH-TCTTCCEEEEEESCHHHHHHHHTTTCCEEECCTTCCCHHHHHHH
T ss_pred EeCCCCCCCCCC--ceeeECCeEhHHHHHHHHH-HhcCCCEEEEECCHHHHHHHHHHcCCeEEEeCCCCCChHHHHHH
Confidence 346666554333 566654332222222 332 2345434345567888888888899999885 456678888765
No 9
>2wvv_A Alpha-L-fucosidase; alpha-L-fucose, hydrolase, glycoside hydrolase family 29; 1.73A {Bacteroides thetaiotaomicron} PDB: 2xii_A* 2xib_A* 2wvv_B 2wvt_A* 2wvu_A* 2wvs_A*
Probab=21.98 E-value=15 Score=30.43 Aligned_cols=21 Identities=14% Similarity=0.300 Sum_probs=17.3
Q ss_pred ccccccccCC-CCCeEEecCCC
Q psy4361 82 KRFRDLIPNY-NQDIIFKDDEG 102 (122)
Q Consensus 82 ~rFkeLvpNy-NpDIiFKDEE~ 102 (122)
++.+||+.|| .||||+-|-..
T Consensus 177 ~Ql~ELlt~YG~~d~lWfDg~~ 198 (450)
T 2wvv_A 177 NQLKELATRYPTVKDFWFDGTW 198 (450)
T ss_dssp HHHHHHHHHCTTCCEEEEESCC
T ss_pred HHHHHHHHcCCCcCEEEEcCCC
Confidence 3468999999 99999999643
No 10
>1qjw_A CEL6A (Y169F), cellobiohydrolase CEL6A (formerly called CBH II); glycosidase, glycoprotein; HET: NAG MAN MGL SGC GLC; 1.90A {Trichoderma reesei} SCOP: c.6.1.1 PDB: 1cb2_A* 3cbh_A 1hgy_A* 1hgw_A* 1qk2_A* 1qk0_A*
Probab=19.48 E-value=70 Score=26.73 Aligned_cols=61 Identities=20% Similarity=0.192 Sum_probs=34.4
Q ss_pred ccC-CCCCCCCCCCCCCCcccccc---ccccCCCCCccccCCCC----------------CCCcccccCCccccccccCC
Q psy4361 32 CCG-PGGKSGRRRYDRYKKITPLV---YKQHVPNVSENTLTASG----------------HSEGRISRDDKRFRDLIPNY 91 (122)
Q Consensus 32 ~CG-PGRg~Grrr~pr~~kltPLv---~kQ~vPnvsE~TlGASG----------------~~EGkI~R~s~rFkeLvpNy 91 (122)
=|- ||||.|.|.... -=-|++ +==-.|--|--|-+.+| |.-|. =-.+-|.+|+.|-
T Consensus 285 WCN~~GaglG~rPt~~--tg~~~vDA~lWVKpPGESDG~c~~~g~~~D~~c~~~~a~~~aP~AG~--Wf~~yf~~L~~NA 360 (365)
T 1qjw_A 285 WCNVIGTGFGIRPSAN--TGDSLLDSFVWVKPGGECDGTSDSSAPRFDSHCALPDALQPAPQAGA--WFQAYFVQLLTNA 360 (365)
T ss_dssp CSSBSSCCCCSCCBSC--CCCTTEEEEECCSCTTBCSCCCCTTSTTCCGGGGSTTBCSSCCSTTS--BCHHHHHHHHHTC
T ss_pred CcCCCCCcCCCCCCCC--CCCCceeEEEEecCCccCCCccccCCCCCCccccccccCCCCCCCCc--cHHHHHHHHHHhc
Confidence 477 699999876543 112333 11112666665554333 22221 1234589999999
Q ss_pred CCCeE
Q psy4361 92 NQDII 96 (122)
Q Consensus 92 NpDIi 96 (122)
||.|+
T Consensus 361 ~P~~~ 365 (365)
T 1qjw_A 361 NPSFL 365 (365)
T ss_dssp SSCCC
T ss_pred CCCCC
Confidence 99874
Done!