RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy4361
         (122 letters)



>d3d1ma1 d.65.1.2 (A:41-188) Sonic hedgehog {Mouse (Mus musculus)
           [TaxId: 10090]}
          Length = 148

 Score =  113 bits (284), Expect = 4e-34
 Identities = 44/67 (65%), Positives = 55/67 (82%), Gaps = 1/67 (1%)

Query: 51  TPLVYKQHVPNVSENTLTASGHSEGRISRDDKRFRDLIPNYNQDIIFKDDEGTGADRLMT 110
           TPL YKQ +PNV+E TL ASG  EG+I+R+ +RF++L PNYN DIIFKD+E TGADRLMT
Sbjct: 1   TPLAYKQFIPNVAEKTLGASGRYEGKITRNSERFKELTPNYNPDIIFKDEENTGADRLMT 60

Query: 111 Q-LKNKM 116
           Q  K+K+
Sbjct: 61  QRCKDKL 67


>d1iu4a_ d.3.1.8 (A:) Microbial transglutaminase
           {Streptoverticillium mobaraense [TaxId: 35621]}
          Length = 331

 Score = 29.3 bits (65), Expect = 0.096
 Identities = 14/68 (20%), Positives = 27/68 (39%), Gaps = 7/68 (10%)

Query: 55  YKQHVPNVSENTLTASGHSEGRISRDD-------KRFRDLIPNYNQDIIFKDDEGTGADR 107
           +K  + N    +       EGR++++        +R R++    N+ +    DE    D 
Sbjct: 90  FKNELKNGRPRSGETRAEFEGRVAKESFDEEKGFQRAREVASVMNRALENAHDESAYLDN 149

Query: 108 LMTQLKNK 115
           L  +L N 
Sbjct: 150 LKKELANG 157


>d1d02a_ c.52.1.8 (A:) Restriction endonuclease MunI {Mycoplasma,
           unidentified species [TaxId: 2093]}
          Length = 197

 Score = 23.8 bits (51), Expect = 6.8
 Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 2/50 (4%)

Query: 74  EGRISRDDKRFRDLIPNYN--QDIIFKDDEGTGADRLMTQLKNKMPHYAD 121
           EG I+RD KR R++   Y+  QD  F        ++L+     K+  Y D
Sbjct: 148 EGDITRDPKRVREITFWYDHYQDNYFMWRPNESGEKLVQHFNEKLKKYLD 197


>d1oisa_ e.15.1.1 (A:) Eukaryotic DNA topoisomerase I, N-terminal
           DNA-binding fragment {Baker's yeast (Saccharomyces
           cerevisiae) [TaxId: 4932]}
          Length = 223

 Score = 23.5 bits (51), Expect = 9.6
 Identities = 7/25 (28%), Positives = 13/25 (52%), Gaps = 2/25 (8%)

Query: 1   MEKQEKK--KKKKRKKKEKVYICVM 23
           +  QEKK  + ++ K +E    C +
Sbjct: 111 LTSQEKKQIRLEREKFEEDYKFCEL 135


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.317    0.135    0.397 

Gapped
Lambda     K      H
   0.267   0.0656    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 471,998
Number of extensions: 21319
Number of successful extensions: 95
Number of sequences better than 10.0: 1
Number of HSP's gapped: 92
Number of HSP's successfully gapped: 20
Length of query: 122
Length of database: 2,407,596
Length adjustment: 75
Effective length of query: 47
Effective length of database: 1,377,846
Effective search space: 64758762
Effective search space used: 64758762
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 47 (22.0 bits)