BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy4365
(1023 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3P4G|A Chain A, X-Ray Crystal Structure Of A Hyperactive, Ca2+-Dependent,
Beta-Helical Antifreeze Protein From An Antarctic
Bacterium
pdb|3P4G|B Chain B, X-Ray Crystal Structure Of A Hyperactive, Ca2+-Dependent,
Beta-Helical Antifreeze Protein From An Antarctic
Bacterium
pdb|3P4G|C Chain C, X-Ray Crystal Structure Of A Hyperactive, Ca2+-Dependent,
Beta-Helical Antifreeze Protein From An Antarctic
Bacterium
pdb|3P4G|D Chain D, X-Ray Crystal Structure Of A Hyperactive, Ca2+-Dependent,
Beta-Helical Antifreeze Protein From An Antarctic
Bacterium
Length = 323
Score = 34.7 bits (78), Expect = 0.25, Method: Composition-based stats.
Identities = 40/159 (25%), Positives = 72/159 (45%), Gaps = 2/159 (1%)
Query: 174 INKGTLSSTRINKGTLSSRINKGTLSSTRINKGTLSSRINKGTLSSTRINKGTLSSRINK 233
++ GT + G + +I+ GT + KG +S+ ++ GT + G LS ++
Sbjct: 77 LDMGTGNDQLYVAGDVLGKIDAGTGNDEIYIKGDVSAAVDAGTGNDEVYIGGNLSGDLDA 136
Query: 234 GTLSSTRINKGTLSSRINKGTLSSTRINKGTLSSRINKGTLSSTRINKGTL--SSRINKG 291
GT + G +++ +N GT + I +S +N GT + T T+ S ++
Sbjct: 137 GTDNDNIQIGGDVNAALNAGTGNDNLIIGHDVSGIVNMGTDNDTVEVGRTINASGKVLLD 196
Query: 292 TLSSTRINKGTLSSRINKGTLSSTRINKGTLSSRINKGT 330
T + + G L ++ GT + T I G +S I GT
Sbjct: 197 TGDDSLLVSGDLFGEVDGGTGNDTIIIAGKVSGNIQGGT 235
Score = 34.7 bits (78), Expect = 0.25, Method: Composition-based stats.
Identities = 40/159 (25%), Positives = 72/159 (45%), Gaps = 2/159 (1%)
Query: 231 INKGTLSSTRINKGTLSSRINKGTLSSTRINKGTLSSRINKGTLSSTRINKGTLSSRINK 290
++ GT + G + +I+ GT + KG +S+ ++ GT + G LS ++
Sbjct: 77 LDMGTGNDQLYVAGDVLGKIDAGTGNDEIYIKGDVSAAVDAGTGNDEVYIGGNLSGDLDA 136
Query: 291 GTLSSTRINKGTLSSRINKGTLSSTRINKGTLSSRINKGTLSSTRINKGTL--SSRINKG 348
GT + G +++ +N GT + I +S +N GT + T T+ S ++
Sbjct: 137 GTDNDNIQIGGDVNAALNAGTGNDNLIIGHDVSGIVNMGTDNDTVEVGRTINASGKVLLD 196
Query: 349 TLSSTRINKGTLSSRINKGTLSSTRINKGTLSSRINKGT 387
T + + G L ++ GT + T I G +S I GT
Sbjct: 197 TGDDSLLVSGDLFGEVDGGTGNDTIIIAGKVSGNIQGGT 235
Score = 34.7 bits (78), Expect = 0.25, Method: Composition-based stats.
Identities = 40/159 (25%), Positives = 72/159 (45%), Gaps = 2/159 (1%)
Query: 288 INKGTLSSTRINKGTLSSRINKGTLSSTRINKGTLSSRINKGTLSSTRINKGTLSSRINK 347
++ GT + G + +I+ GT + KG +S+ ++ GT + G LS ++
Sbjct: 77 LDMGTGNDQLYVAGDVLGKIDAGTGNDEIYIKGDVSAAVDAGTGNDEVYIGGNLSGDLDA 136
Query: 348 GTLSSTRINKGTLSSRINKGTLSSTRINKGTLSSRINKGTLSSTRINKGTL--SSRINKG 405
GT + G +++ +N GT + I +S +N GT + T T+ S ++
Sbjct: 137 GTDNDNIQIGGDVNAALNAGTGNDNLIIGHDVSGIVNMGTDNDTVEVGRTINASGKVLLD 196
Query: 406 TLSSTRINKGTLSSRINKGTLSSTRINKGTLSSRINKGT 444
T + + G L ++ GT + T I G +S I GT
Sbjct: 197 TGDDSLLVSGDLFGEVDGGTGNDTIIIAGKVSGNIQGGT 235
Score = 34.7 bits (78), Expect = 0.25, Method: Composition-based stats.
Identities = 40/159 (25%), Positives = 72/159 (45%), Gaps = 2/159 (1%)
Query: 345 INKGTLSSTRINKGTLSSRINKGTLSSTRINKGTLSSRINKGTLSSTRINKGTLSSRINK 404
++ GT + G + +I+ GT + KG +S+ ++ GT + G LS ++
Sbjct: 77 LDMGTGNDQLYVAGDVLGKIDAGTGNDEIYIKGDVSAAVDAGTGNDEVYIGGNLSGDLDA 136
Query: 405 GTLSSTRINKGTLSSRINKGTLSSTRINKGTLSSRINKGTLSSTRINKGTL--SSRINKG 462
GT + G +++ +N GT + I +S +N GT + T T+ S ++
Sbjct: 137 GTDNDNIQIGGDVNAALNAGTGNDNLIIGHDVSGIVNMGTDNDTVEVGRTINASGKVLLD 196
Query: 463 TLSSTRINKGTLSSRINKGTLSSTRINKGTLSSRINKGT 501
T + + G L ++ GT + T I G +S I GT
Sbjct: 197 TGDDSLLVSGDLFGEVDGGTGNDTIIIAGKVSGNIQGGT 235
Score = 34.7 bits (78), Expect = 0.25, Method: Composition-based stats.
Identities = 40/159 (25%), Positives = 72/159 (45%), Gaps = 2/159 (1%)
Query: 402 INKGTLSSTRINKGTLSSRINKGTLSSTRINKGTLSSRINKGTLSSTRINKGTLSSRINK 461
++ GT + G + +I+ GT + KG +S+ ++ GT + G LS ++
Sbjct: 77 LDMGTGNDQLYVAGDVLGKIDAGTGNDEIYIKGDVSAAVDAGTGNDEVYIGGNLSGDLDA 136
Query: 462 GTLSSTRINKGTLSSRINKGTLSSTRINKGTLSSRINKGTLSSTRINKGTL--SSRINKG 519
GT + G +++ +N GT + I +S +N GT + T T+ S ++
Sbjct: 137 GTDNDNIQIGGDVNAALNAGTGNDNLIIGHDVSGIVNMGTDNDTVEVGRTINASGKVLLD 196
Query: 520 TLSSTRINKGTLSSRINKGTLSSTRINKGTLSSRINKGT 558
T + + G L ++ GT + T I G +S I GT
Sbjct: 197 TGDDSLLVSGDLFGEVDGGTGNDTIIIAGKVSGNIQGGT 235
Score = 34.7 bits (78), Expect = 0.25, Method: Composition-based stats.
Identities = 40/159 (25%), Positives = 72/159 (45%), Gaps = 2/159 (1%)
Query: 459 INKGTLSSTRINKGTLSSRINKGTLSSTRINKGTLSSRINKGTLSSTRINKGTLSSRINK 518
++ GT + G + +I+ GT + KG +S+ ++ GT + G LS ++
Sbjct: 77 LDMGTGNDQLYVAGDVLGKIDAGTGNDEIYIKGDVSAAVDAGTGNDEVYIGGNLSGDLDA 136
Query: 519 GTLSSTRINKGTLSSRINKGTLSSTRINKGTLSSRINKGTLSSTRINKGTL--SSRINKG 576
GT + G +++ +N GT + I +S +N GT + T T+ S ++
Sbjct: 137 GTDNDNIQIGGDVNAALNAGTGNDNLIIGHDVSGIVNMGTDNDTVEVGRTINASGKVLLD 196
Query: 577 TLSSTRINKGTLSSRINKGTLSSTRINKGTLSSRINKGT 615
T + + G L ++ GT + T I G +S I GT
Sbjct: 197 TGDDSLLVSGDLFGEVDGGTGNDTIIIAGKVSGNIQGGT 235
Score = 34.7 bits (78), Expect = 0.25, Method: Composition-based stats.
Identities = 40/159 (25%), Positives = 72/159 (45%), Gaps = 2/159 (1%)
Query: 516 INKGTLSSTRINKGTLSSRINKGTLSSTRINKGTLSSRINKGTLSSTRINKGTLSSRINK 575
++ GT + G + +I+ GT + KG +S+ ++ GT + G LS ++
Sbjct: 77 LDMGTGNDQLYVAGDVLGKIDAGTGNDEIYIKGDVSAAVDAGTGNDEVYIGGNLSGDLDA 136
Query: 576 GTLSSTRINKGTLSSRINKGTLSSTRINKGTLSSRINKGTLSSTRINKGTL--SSRINKG 633
GT + G +++ +N GT + I +S +N GT + T T+ S ++
Sbjct: 137 GTDNDNIQIGGDVNAALNAGTGNDNLIIGHDVSGIVNMGTDNDTVEVGRTINASGKVLLD 196
Query: 634 TLSSTRINKGTLSSRINKGTLSSTRINKGTLSSRINKGT 672
T + + G L ++ GT + T I G +S I GT
Sbjct: 197 TGDDSLLVSGDLFGEVDGGTGNDTIIIAGKVSGNIQGGT 235
Score = 34.7 bits (78), Expect = 0.25, Method: Composition-based stats.
Identities = 40/159 (25%), Positives = 72/159 (45%), Gaps = 2/159 (1%)
Query: 573 INKGTLSSTRINKGTLSSRINKGTLSSTRINKGTLSSRINKGTLSSTRINKGTLSSRINK 632
++ GT + G + +I+ GT + KG +S+ ++ GT + G LS ++
Sbjct: 77 LDMGTGNDQLYVAGDVLGKIDAGTGNDEIYIKGDVSAAVDAGTGNDEVYIGGNLSGDLDA 136
Query: 633 GTLSSTRINKGTLSSRINKGTLSSTRINKGTLSSRINKGTLSSTRINKGTL--SSRINKG 690
GT + G +++ +N GT + I +S +N GT + T T+ S ++
Sbjct: 137 GTDNDNIQIGGDVNAALNAGTGNDNLIIGHDVSGIVNMGTDNDTVEVGRTINASGKVLLD 196
Query: 691 TLSSTRINKGTLSSRINKGTLSSTRINKGTLSSRINKGT 729
T + + G L ++ GT + T I G +S I GT
Sbjct: 197 TGDDSLLVSGDLFGEVDGGTGNDTIIIAGKVSGNIQGGT 235
Score = 34.7 bits (78), Expect = 0.25, Method: Composition-based stats.
Identities = 40/159 (25%), Positives = 72/159 (45%), Gaps = 2/159 (1%)
Query: 630 INKGTLSSTRINKGTLSSRINKGTLSSTRINKGTLSSRINKGTLSSTRINKGTLSSRINK 689
++ GT + G + +I+ GT + KG +S+ ++ GT + G LS ++
Sbjct: 77 LDMGTGNDQLYVAGDVLGKIDAGTGNDEIYIKGDVSAAVDAGTGNDEVYIGGNLSGDLDA 136
Query: 690 GTLSSTRINKGTLSSRINKGTLSSTRINKGTLSSRINKGTLSSTRINKGTL--SSRINKG 747
GT + G +++ +N GT + I +S +N GT + T T+ S ++
Sbjct: 137 GTDNDNIQIGGDVNAALNAGTGNDNLIIGHDVSGIVNMGTDNDTVEVGRTINASGKVLLD 196
Query: 748 TLSSTRINKGTLSSRINKGTLSSTRINKGTLSSRINKGT 786
T + + G L ++ GT + T I G +S I GT
Sbjct: 197 TGDDSLLVSGDLFGEVDGGTGNDTIIIAGKVSGNIQGGT 235
Score = 34.7 bits (78), Expect = 0.25, Method: Composition-based stats.
Identities = 40/159 (25%), Positives = 72/159 (45%), Gaps = 2/159 (1%)
Query: 687 INKGTLSSTRINKGTLSSRINKGTLSSTRINKGTLSSRINKGTLSSTRINKGTLSSRINK 746
++ GT + G + +I+ GT + KG +S+ ++ GT + G LS ++
Sbjct: 77 LDMGTGNDQLYVAGDVLGKIDAGTGNDEIYIKGDVSAAVDAGTGNDEVYIGGNLSGDLDA 136
Query: 747 GTLSSTRINKGTLSSRINKGTLSSTRINKGTLSSRINKGTLSSTRINKGTL--SSRINKG 804
GT + G +++ +N GT + I +S +N GT + T T+ S ++
Sbjct: 137 GTDNDNIQIGGDVNAALNAGTGNDNLIIGHDVSGIVNMGTDNDTVEVGRTINASGKVLLD 196
Query: 805 TLSSTRINKGTLSSRINKGTLSSTRINKGTLSSRINKGT 843
T + + G L ++ GT + T I G +S I GT
Sbjct: 197 TGDDSLLVSGDLFGEVDGGTGNDTIIIAGKVSGNIQGGT 235
Score = 34.7 bits (78), Expect = 0.28, Method: Composition-based stats.
Identities = 38/146 (26%), Positives = 67/146 (45%), Gaps = 2/146 (1%)
Query: 168 GTLSSRINKGTLSSTRINKGTLSSRINKGTLSSTRINKGTLSSRINKGTLSSTRINKGTL 227
G + +I+ GT + KG +S+ ++ GT + G LS ++ GT + G +
Sbjct: 90 GDVLGKIDAGTGNDEIYIKGDVSAAVDAGTGNDEVYIGGNLSGDLDAGTDNDNIQIGGDV 149
Query: 228 SSRINKGTLSSTRINKGTLSSRINKGTLSSTRINKGTL--SSRINKGTLSSTRINKGTLS 285
++ +N GT + I +S +N GT + T T+ S ++ T + + G L
Sbjct: 150 NAALNAGTGNDNLIIGHDVSGIVNMGTDNDTVEVGRTINASGKVLLDTGDDSLLVSGDLF 209
Query: 286 SRINKGTLSSTRINKGTLSSRINKGT 311
++ GT + T I G +S I GT
Sbjct: 210 GEVDGGTGNDTIIIAGKVSGNIQGGT 235
Score = 32.0 bits (71), Expect = 2.0, Method: Composition-based stats.
Identities = 34/128 (26%), Positives = 59/128 (46%), Gaps = 2/128 (1%)
Query: 167 KGTLSSRINKGTLSSTRINKGTLSSRINKGTLSSTRINKGTLSSRINKGTLSSTRINKGT 226
KG +S+ ++ GT + G LS ++ GT + G +++ +N GT + I
Sbjct: 108 KGDVSAAVDAGTGNDEVYIGGNLSGDLDAGTDNDNIQIGGDVNAALNAGTGNDNLIIGHD 167
Query: 227 LSSRINKGTLSSTRINKGTL--SSRINKGTLSSTRINKGTLSSRINKGTLSSTRINKGTL 284
+S +N GT + T T+ S ++ T + + G L ++ GT + T I G +
Sbjct: 168 VSGIVNMGTDNDTVEVGRTINASGKVLLDTGDDSLLVSGDLFGEVDGGTGNDTIIIAGKV 227
Query: 285 SSRINKGT 292
S I GT
Sbjct: 228 SGNIQGGT 235
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.309 0.125 0.331
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 22,612,986
Number of Sequences: 62578
Number of extensions: 868088
Number of successful extensions: 1438
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 1244
Number of HSP's gapped (non-prelim): 95
length of query: 1023
length of database: 14,973,337
effective HSP length: 109
effective length of query: 914
effective length of database: 8,152,335
effective search space: 7451234190
effective search space used: 7451234190
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 56 (26.2 bits)