Query psy4365
Match_columns 1023
No_of_seqs 33 out of 35
Neff 1.1
Searched_HMMs 46136
Date Fri Aug 16 23:40:00 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4365.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/4365hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF11414 Suppressor_APC: Adeno 80.5 0.43 9.4E-06 42.4 -0.5 13 946-958 1-13 (84)
2 COG2816 NPY1 NTP pyrophosphohy 52.9 8.4 0.00018 40.7 1.9 91 25-116 123-228 (279)
3 COG3878 Uncharacterized protei 45.4 15 0.00032 38.9 2.3 95 20-124 83-203 (261)
4 COG2315 MmcQ Uncharacterized p 42.3 14 0.00029 34.8 1.4 59 38-98 16-78 (118)
5 PLN02406 ethanolamine-phosphat 40.2 9.2 0.0002 41.9 -0.1 53 47-99 100-152 (418)
6 cd04925 ACT_ACR_2 ACT domain-c 30.6 70 0.0015 26.2 3.6 13 965-977 38-50 (74)
7 KOG2803|consensus 30.0 20 0.00043 39.2 0.4 90 46-136 54-202 (358)
8 PRK05464 Na(+)-translocating N 25.7 53 0.0011 34.3 2.6 39 32-72 75-113 (409)
9 PF07354 Sp38: Zona-pellucida- 24.9 42 0.00091 35.7 1.7 37 9-60 146-182 (271)
10 cd00207 fer2 2Fe-2S iron-sulfu 24.4 68 0.0015 25.5 2.5 44 28-75 34-77 (84)
11 cd08802 Death_UNC5B Death doma 24.1 17 0.00037 32.7 -1.1 35 89-134 9-49 (84)
12 COG0801 FolK 7,8-dihydro-6-hyd 23.8 39 0.00084 33.3 1.1 41 25-65 84-133 (160)
13 cd02174 CCT CTP:phosphocholine 23.6 22 0.00047 33.5 -0.6 67 20-99 33-99 (150)
14 cd06606 STKc_MAPKKK Catalytic 23.3 1.6E+02 0.0036 25.6 4.8 29 948-976 50-82 (260)
15 PRK15033 tricarballylate utili 21.8 25 0.00054 38.7 -0.6 38 33-74 37-76 (389)
16 KOG1572|consensus 21.6 25 0.00055 37.0 -0.6 31 857-896 154-184 (249)
17 PLN02413 choline-phosphate cyt 21.5 27 0.00058 37.4 -0.4 27 47-73 76-102 (294)
18 KOG2732|consensus 20.7 1.2E+02 0.0026 34.2 4.2 35 12-46 313-371 (435)
No 1
>PF11414 Suppressor_APC: Adenomatous polyposis coli tumour suppressor protein; PDB: 1M5I_A.
Probab=80.50 E-value=0.43 Score=42.39 Aligned_cols=13 Identities=31% Similarity=0.590 Sum_probs=6.2
Q ss_pred cchhhhhhccccc
Q psy4365 946 IDYNMVRLDFRFN 958 (1023)
Q Consensus 946 VDYNMLKRMKELn 958 (1023)
|||+|||+||||-
T Consensus 1 ~~~~~lk~mkeLE 13 (84)
T PF11414_consen 1 VDYNMLKRMKELE 13 (84)
T ss_dssp ------HHHHHHH
T ss_pred CHhhHHHHHHHHH
Confidence 8999999999984
No 2
>COG2816 NPY1 NTP pyrophosphohydrolases containing a Zn-finger, probably nucleic-acid-binding [DNA replication, recombination, and repair]
Probab=52.94 E-value=8.4 Score=40.66 Aligned_cols=91 Identities=24% Similarity=0.422 Sum_probs=69.7
Q ss_pred eeccCccccCCCCceecccCCCCCCccccC----ccccccccccceeEEEEEEe-------echhhhhhhhcccchh---
Q psy4365 25 VRDQGWGGLCSDCSVQCTPFTSPHYPVLER----PRLAKSAEWADSVVLCCLVE-------FEIPLLRSYFREVDIG--- 90 (1023)
Q Consensus 25 vrdqgwgglcsdcsvqctpftsphypvler----prlaksaewadsvvlcclve-------feipllrsyfrevdig--- 90 (1023)
.+++||.-.|++|...|-|-+.|--=|+-+ --||....|. -.+.-||.- +|--.-|.-|.|+-|-
T Consensus 123 ~~~~g~~~~C~~cg~~~fPR~dP~vIv~v~~~~~ilLa~~~~h~-~g~yS~LAGFVE~GETlE~AV~REv~EE~Gi~V~~ 201 (279)
T COG2816 123 PREGGWARVCPKCGHEHFPRIDPCVIVAVIRGDEILLARHPRHF-PGMYSLLAGFVEPGETLEQAVAREVFEEVGIKVKN 201 (279)
T ss_pred cccCceeeeCCCCCCccCCCCCCeEEEEEecCCceeecCCCCCC-CcceeeeeecccCCccHHHHHHHHHHHhhCeEEee
Confidence 478999999999999999999997766533 2367776666 445555544 4667889999998764
Q ss_pred -hhccccccchhhccccccccceeecC
Q psy4365 91 -EYLNKGHWRLSEALNISNYLNYVFGG 116 (1023)
Q Consensus 91 -eylnkghwrlsealnisnylnyvfgg 116 (1023)
+|+..--|-+..-|=|--+-.|..|-
T Consensus 202 vrY~~SQPWPfP~SLMigf~aey~sge 228 (279)
T COG2816 202 VRYVGSQPWPFPHSLMLGFMAEYDSGE 228 (279)
T ss_pred eeEEeccCCCCchhhhhhheeeecccc
Confidence 68888889888888888777777665
No 3
>COG3878 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=45.41 E-value=15 Score=38.92 Aligned_cols=95 Identities=21% Similarity=0.398 Sum_probs=55.9
Q ss_pred EEEEEeeccCcccc----CC----------------CCceecccCC----CCCCccccCccccccccccceeEEEEEEee
Q psy4365 20 FLFIGVRDQGWGGL----CS----------------DCSVQCTPFT----SPHYPVLERPRLAKSAEWADSVVLCCLVEF 75 (1023)
Q Consensus 20 flfigvrdqgwggl----cs----------------dcsvqctpft----sphypvlerprlaksaewadsvvlcclvef 75 (1023)
..||+++||=||-- |. +--||-.+|. +|. ||++ .-+-...-.+-.++-|+|||
T Consensus 83 qFyi~~~DdlYGl~f~~~~~~~~F~v~~f~~~~e~~~~~~~~~~f~~~~~~~~-~~~~--e~~~~~~~~~~~~~~~~~eF 159 (261)
T COG3878 83 QFYISSEDDLYGLSFDDFTEQTGFRVIYFEKIEENYKILEEDVNFKGNNINPR-PVVD--EFKMKGQLSKEKLMPDLVEF 159 (261)
T ss_pred EEEEeccccccccccccccCcCceEEEeccchhhhhhccccccCcccCCcCcc-cchh--hhhhcceeccccccchhhHh
Confidence 56899999999942 11 1112333442 233 6655 11111122234578999999
Q ss_pred chhhhhhhhcccchhhhccccccchhhccccccccceeec--CCcCcCCCC
Q psy4365 76 EIPLLRSYFREVDIGEYLNKGHWRLSEALNISNYLNYVFG--GGRTPYPSD 124 (1023)
Q Consensus 76 eipllrsyfrevdigeylnkghwrlsealnisnylnyvfg--ggrtpypsd 124 (1023)
|=++--.|..-+| +|..-+.|.+-|.... +.|| +|--||+..
T Consensus 160 En~~g~~~~ei~~--q~~~~~ed~~~e~~e~-----~~~g~q~GGyp~Ftq 203 (261)
T COG3878 160 ENKIGDEFLEIIQ--QFVHLKEDKLDELFEA-----ATFGNQGGGYPYFTQ 203 (261)
T ss_pred hhhhhHHHHHHHh--hhccchhhhhhhhhhc-----cccccccCCcccccc
Confidence 9998877766554 6777777877665443 3344 666677643
No 4
>COG2315 MmcQ Uncharacterized protein conserved in bacteria [Function unknown]
Probab=42.33 E-value=14 Score=34.84 Aligned_cols=59 Identities=27% Similarity=0.338 Sum_probs=37.5
Q ss_pred ceecccCCCCCCccccCcc----ccccccccceeEEEEEEeechhhhhhhhcccchhhhcccccc
Q psy4365 38 SVQCTPFTSPHYPVLERPR----LAKSAEWADSVVLCCLVEFEIPLLRSYFREVDIGEYLNKGHW 98 (1023)
Q Consensus 38 svqctpftsphypvlerpr----laksaewadsvvlcclvefeipllrsyfrevdigeylnkghw 98 (1023)
..+|.||. |++-|+-.-. +-...++--.|.|=|--| ....||+.+..+--|.||||-||
T Consensus 16 a~~~~pf~-~~~~v~kv~~K~fal~~~~~~~~~i~lK~~pe-~~~~Lr~~~~~I~PayhmnK~hW 78 (118)
T COG2315 16 AELDYPFG-PKAAVFKVGGKMFALIGEVEGRPLINLKCSPE-KFELLRQQQPGIRPAYHMNKKHW 78 (118)
T ss_pred CCcccccC-CCceEEEEccEEEEEeeecCCCceeEEecCHH-HHHHHHHhCCCcCccccccccee
Confidence 35788888 7666654322 111122222344555433 35689998999999999999999
No 5
>PLN02406 ethanolamine-phosphate cytidylyltransferase
Probab=40.16 E-value=9.2 Score=41.95 Aligned_cols=53 Identities=19% Similarity=0.305 Sum_probs=43.5
Q ss_pred CCCccccCccccccccccceeEEEEEEeechhhhhhhhcccchhhhccccccc
Q psy4365 47 PHYPVLERPRLAKSAEWADSVVLCCLVEFEIPLLRSYFREVDIGEYLNKGHWR 99 (1023)
Q Consensus 47 phypvlerprlaksaewadsvvlcclvefeipllrsyfrevdigeylnkghwr 99 (1023)
|.+|.-||-.+.++.+|.|-||..+-.+++.+++...|+++++.-++.-+.|.
T Consensus 100 PV~~~eER~~~v~alk~VD~Vv~~apy~~~~d~~~~li~~~~~D~vVhGdD~~ 152 (418)
T PLN02406 100 PVTPMHERMIMVSGVKWVDEVIPDAPYAITEEFMNKLFNEYNIDYIIHGDDPC 152 (418)
T ss_pred CcCCHHHHHHHHHhcCCCceEEeCCccccchHHHHHHHHHhCCCEEEECCCcc
Confidence 89999999999999999999999888888888888888888875444444565
No 6
>cd04925 ACT_ACR_2 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=30.61 E-value=70 Score=26.24 Aligned_cols=13 Identities=15% Similarity=0.207 Sum_probs=10.4
Q ss_pred eeeeeeEEEeccc
Q psy4365 965 VMFSDVFVVTEKD 977 (1023)
Q Consensus 965 vmfsdvfvvtekd 977 (1023)
-+|.|+|.|++.+
T Consensus 38 ~~~~d~f~V~d~~ 50 (74)
T cd04925 38 GRLACVIYVRDEE 50 (74)
T ss_pred CEEEEEEEEEcCc
Confidence 3688999998755
No 7
>KOG2803|consensus
Probab=29.96 E-value=20 Score=39.21 Aligned_cols=90 Identities=28% Similarity=0.461 Sum_probs=58.6
Q ss_pred CCCCccccCccccccccccceeEEEEEEeechhhhhhh-----------------------------hcccc--------
Q psy4365 46 SPHYPVLERPRLAKSAEWADSVVLCCLVEFEIPLLRSY-----------------------------FREVD-------- 88 (1023)
Q Consensus 46 sphypvlerprlaksaewadsvvlcclvefeipllrsy-----------------------------frevd-------- 88 (1023)
.|-++--||-+++++..|.|-||.-...-+....++.| |+||.
T Consensus 54 pPV~t~eERy~~v~~ikWVDEVV~~APyvtt~~~md~y~cd~vvHGdDit~~a~G~D~Y~~vK~agrykevKRT~GVSTT 133 (358)
T KOG2803|consen 54 PPVFTDEERYEMVKAIKWVDEVVEGAPYVTTLEWMDKYGCDYVVHGDDITLDADGLDCYRLVKAAGRYKEVKRTEGVSTT 133 (358)
T ss_pred CCcccHHHHHHHHhhcchhhhhhcCCCeeccHHHHHHhCCeEEEeCCcceecCCCccHHHHHHHhcchheeeeccCcchh
Confidence 47778889999999999999999876655555555444 34432
Q ss_pred --hhh--hcccccc---chhhccccccccceeecCCcCcCC---------------CCCCCCCCCccccc
Q psy4365 89 --IGE--YLNKGHW---RLSEALNISNYLNYVFGGGRTPYP---------------SDGRSPSPTSEVGY 136 (1023)
Q Consensus 89 --ige--ylnkghw---rlsealnisnylnyvfgggrtpyp---------------sdgrspsptsevgy 136 (1023)
+|. .++++|| -.++...++-+.-+-= .|.+|+- +.|+.|-|+..|=|
T Consensus 134 elvgRmll~~~~~~~~~~~~~~~e~~~~~g~~~-~~~sp~t~~s~F~~tt~~i~~~~~G~~p~p~~kvVY 202 (358)
T KOG2803|consen 134 ELVGRMLLKKRNHHSDEVSSSQRELSFSSGTDD-DGLSPWTRVSVFLPTTQKIIQFSNGREPKPTDKVVY 202 (358)
T ss_pred hhhhHhhhhccCCCccccchhhhhhhhccccCC-cccCCccceeeeeecCccceEeecCCCCCCCCcEEE
Confidence 222 2467899 4444444444443332 2366664 78888888887766
No 8
>PRK05464 Na(+)-translocating NADH-quinone reductase subunit F; Provisional
Probab=25.66 E-value=53 Score=34.32 Aligned_cols=39 Identities=23% Similarity=0.348 Sum_probs=20.4
Q ss_pred ccCCCCceecccCCCCCCccccCccccccccccceeEEEEE
Q psy4365 32 GLCSDCSVQCTPFTSPHYPVLERPRLAKSAEWADSVVLCCL 72 (1023)
Q Consensus 32 glcsdcsvqctpftsphypvlerprlaksaewadsvvlccl 72 (1023)
|.|.-|.|++..=. ..+.-.|.+.|.. .|-++..+|.|.
T Consensus 75 G~CgtC~v~v~~G~-~~~~~~e~~~l~~-~e~~~g~rLaCq 113 (409)
T PRK05464 75 GSCGQCRVKVKEGG-GDILPTELSHISK-REAKEGWRLSCQ 113 (409)
T ss_pred cEeCCCEEEEecCC-cCCChhhhhhcCH-hhccCCcEEEee
Confidence 89999999986322 1111223344543 344444444443
No 9
>PF07354 Sp38: Zona-pellucida-binding protein (Sp38); InterPro: IPR010857 This family contains a number of zona-pellucida-binding proteins that seem to be restricted to mammals. These are sperm proteins that bind to the 90 kDa family of zona pellucida glycoproteins in a calcium-dependent manner []. These represent some of the specific molecules that mediate the first steps of gamete interaction, allowing fertilisation to occur [].; GO: 0007339 binding of sperm to zona pellucida, 0005576 extracellular region
Probab=24.85 E-value=42 Score=35.74 Aligned_cols=37 Identities=38% Similarity=0.777 Sum_probs=28.0
Q ss_pred cccceeEEEeEEEEEEeeccCccccCCCCceecccCCCCCCccccCcccccc
Q psy4365 9 KAKFFSFEINFFLFIGVRDQGWGGLCSDCSVQCTPFTSPHYPVLERPRLAKS 60 (1023)
Q Consensus 9 kakffsfeinfflfigvrdqgwgglcsdcsvqctpftsphypvlerprlaks 60 (1023)
..-||.|.+|.| |.||+..|.. ++.|...+ +-+|+|+
T Consensus 146 ~eLFitF~V~~~------~~~~~~~c~~-~~~Ce~~t--------n~~l~kA 182 (271)
T PF07354_consen 146 NELFITFQVNPF------APGWKPACCQ-SVDCEDST--------NSRLQKA 182 (271)
T ss_pred eeeEEEEEeecc------cCCCCCCCCC-CCcCchhH--------HHHHHHH
Confidence 344888888887 7899999999 88898443 4456663
No 10
>cd00207 fer2 2Fe-2S iron-sulfur cluster binding domain. Iron-sulfur proteins play an important role in electron transfer processes and in various enzymatic reactions. The family includes plant and algal ferredoxins, which act as electron carriers in photosynthesis and ferredoxins, which participate in redox chains (from bacteria to mammals). Fold is ismilar to thioredoxin.
Probab=24.44 E-value=68 Score=25.46 Aligned_cols=44 Identities=23% Similarity=0.386 Sum_probs=28.4
Q ss_pred cCccccCCCCceecccCCCCCCccccCccccccccccceeEEEEEEee
Q psy4365 28 QGWGGLCSDCSVQCTPFTSPHYPVLERPRLAKSAEWADSVVLCCLVEF 75 (1023)
Q Consensus 28 qgwgglcsdcsvqctpftsphypvlerprlaksaewadsvvlcclvef 75 (1023)
.=++|.|..|.|.-..-.-.+.| +.+....++.+-.+|.|....
T Consensus 34 ~C~~g~Cg~C~v~v~~G~~~~~~----~~~~~~~~~~~~~~LaC~~~~ 77 (84)
T cd00207 34 SCRAGACGTCKVEVVEGEVDQSD----PSLLDEEEAEGGYVLACQTRV 77 (84)
T ss_pred CCCCcCCcCCEEEEeeCccccCc----ccCCCHHHHhCCeEEEEeCee
Confidence 33567999999987543333322 255566677777888887654
No 11
>cd08802 Death_UNC5B Death domain found in Uncoordinated-5B. Death Domain (DD) found in Uncoordinated-5B (UNC5B). UNC5B is part of the UNC-5 homolog family. It is a receptor for the secreted netrin-1 and plays a role in axonal guidance, angiogenesis, and apoptosis. UNC5B signaling is involved in the netrin-1-induced proliferation and migration of renal proximal tubular cells. It is also required for vascular patterning during embryonic development, and its activation inhibits sprouting angiogenesis. UNC5 proteins are transmembrane proteins with an extracellular domain consisting of two immunoglobulin repeats, two thrombospondin type-I modules and an intracellular region containing a ZU-5 domain, UPA domain and a DD. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activatio
Probab=24.08 E-value=17 Score=32.66 Aligned_cols=35 Identities=43% Similarity=0.908 Sum_probs=23.7
Q ss_pred hhhhcc----cc-ccc-hhhccccccccceeecCCcCcCCCCCCCCCCCccc
Q psy4365 89 IGEYLN----KG-HWR-LSEALNISNYLNYVFGGGRTPYPSDGRSPSPTSEV 134 (1023)
Q Consensus 89 igeyln----kg-hwr-lsealnisnylnyvfgggrtpypsdgrspsptsev 134 (1023)
+..||| .| .|+ |+|.|++..|++| | ...||||..+
T Consensus 9 Lc~~Ld~p~~~g~DW~~LAekL~ld~yl~~-f----------~~~psPT~~L 49 (84)
T cd08802 9 ICNSLDAPNSRGNDWRLLAQKLSMDRYLNY-F----------ATKASPTGVI 49 (84)
T ss_pred HHHHhCCCCCCCCcHHHHHHHcCchhHHHH-H----------HcCCCcHHHH
Confidence 345555 23 497 7999999999995 3 2466777643
No 12
>COG0801 FolK 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase [Coenzyme metabolism]
Probab=23.75 E-value=39 Score=33.25 Aligned_cols=41 Identities=37% Similarity=0.524 Sum_probs=32.0
Q ss_pred eeccCccc--------cCCCCceecccCCCCCCccccCcccccc-ccccc
Q psy4365 25 VRDQGWGG--------LCSDCSVQCTPFTSPHYPVLERPRLAKS-AEWAD 65 (1023)
Q Consensus 25 vrdqgwgg--------lcsdcsvqctpftsphypvlerprlaks-aewad 65 (1023)
||.+-||. +|.||..++...+-||+-++||+-+-.- +|-|.
T Consensus 84 ~R~~rwgPRtlDlDIllygd~~~~~~~LtiPHp~~~eR~FVL~PL~ei~p 133 (160)
T COG0801 84 VRSERWGPRTLDLDILLYGDEVIETPRLTLPHPRMLERAFVLIPLAEIAP 133 (160)
T ss_pred cccccCCCcceeeEEEEEcceeccCCCccccCcchhhCchhHHhhhhhCc
Confidence 67888997 5778988888889999999999865443 44333
No 13
>cd02174 CCT CTP:phosphocholine cytidylyltransferase. CTP:phosphocholine cytidylyltransferase (CCT) catalyzes the condensation of CTP and phosphocholine to form CDP-choline as the rate-limiting and regulatory step in the CDP-choline pathway. CCT is unique in that its enzymatic activity is regulated by the extent of its association with membrane structures. A current model posts that the elastic stress of the bilayer curvature is sensed by CCT and this governs the degree of membrane association, thus providing a mechanism for both positive and negative regulation of activity.
Probab=23.64 E-value=22 Score=33.47 Aligned_cols=67 Identities=16% Similarity=0.215 Sum_probs=40.4
Q ss_pred EEEEEeeccCccccCCCCceecccCCCCCCccccCccccccccccceeEEEEEEeechhhhhhhhcccchhhhccccccc
Q psy4365 20 FLFIGVRDQGWGGLCSDCSVQCTPFTSPHYPVLERPRLAKSAEWADSVVLCCLVEFEIPLLRSYFREVDIGEYLNKGHWR 99 (1023)
Q Consensus 20 flfigvrdqgwgglcsdcsvqctpftsphypvlerprlaksaewadsvvlcclvefeipllrsyfrevdigeylnkghwr 99 (1023)
+|.+||.. |=.++.-.=. |.+|.-||-.+.++..|.|.|++.+-. .+...+++++++.-++--..|.
T Consensus 33 ~LiVgV~s--------D~~~~~~k~~-pi~~~~eR~~~l~~~~~Vd~Vi~~~~~----~~~~~~i~~~~~d~vv~G~d~~ 99 (150)
T cd02174 33 YLIVGVHS--------DEEIHKHKGP-PVMTEEERYEAVRHCKWVDEVVEGAPY----VTTPEFLDKYKCDYVAHGDDIY 99 (150)
T ss_pred EEEEEEec--------CHHHhhcCCC-CcCCHHHHHHHHHhcCCCCeEEECCCC----CChHHHHHHhCCCEEEECCCCC
Confidence 68888843 3233222112 889999999999999999999875422 2234445555543333333353
No 14
>cd06606 STKc_MAPKKK Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-Activated Protein Kinase Kinase Kinase. Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKKKs (MKKKs or MAP3Ks) are also called MAP/ERK kinase kinases (MEKKs) in some cases. They phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. This subfamily is composed of the Apoptosis Signal-regulating Kinases ASK1 (or MAPKK
Probab=23.34 E-value=1.6e+02 Score=25.56 Aligned_cols=29 Identities=10% Similarity=-0.057 Sum_probs=22.5
Q ss_pred hhhhhhccccceeeccceeeee----eEEEecc
Q psy4365 948 YNMVRLDFRFNFVPCSRVMFSD----VFVVTEK 976 (1023)
Q Consensus 948 YNMLKRMKELnfvpcsrvmfsd----vfvvtek 976 (1023)
+.+|+++..-|+++|.-+.+.+ +++|+|-
T Consensus 50 ~~~l~~l~~~~i~~~~~~~~~~~~~~~~lv~e~ 82 (260)
T cd06606 50 IRILSSLQHPNIVRYYGSERDEEKNTLNIFLEY 82 (260)
T ss_pred HHHHHHcCCCCEeeEEEEEecCCCCeEEEEEEe
Confidence 5678888889999998887766 6677763
No 15
>PRK15033 tricarballylate utilization protein B; Provisional
Probab=21.82 E-value=25 Score=38.65 Aligned_cols=38 Identities=24% Similarity=0.407 Sum_probs=22.7
Q ss_pred cCCCCceecccCCCCCCccccCccccccccc--cceeEEEEEEe
Q psy4365 33 LCSDCSVQCTPFTSPHYPVLERPRLAKSAEW--ADSVVLCCLVE 74 (1023)
Q Consensus 33 lcsdcsvqctpftsphypvlerprlaksaew--adsvvlcclve 74 (1023)
-|..|.+.|.-| |.++ +|.++.+..-| ||.-.-|-..|
T Consensus 37 ~Cr~C~~~Cpvf--P~l~--~r~~~~~~d~~~~a~~C~~Cg~C~ 76 (389)
T PRK15033 37 ACRYCEGFCAVF--PAMT--RRLEFGKADIHYLANLCHNCGACL 76 (389)
T ss_pred CCCCccccCCCc--hhhh--hhhcCChhhhHHHHHhCcCccccc
Confidence 488899999877 5555 45545444433 44555553333
No 16
>KOG1572|consensus
Probab=21.59 E-value=25 Score=37.00 Aligned_cols=31 Identities=32% Similarity=0.664 Sum_probs=26.4
Q ss_pred eeccceeEEEEEeccccccCHHHHHHHHHHhhhhhccchh
Q psy4365 857 RINKGTLRIGLIANNERNLDKAEIRTALQNWQMGIIMNED 896 (1023)
Q Consensus 857 rinkgtlrigli~n~eRnLDKAEIRtALQNWQMsLLmnE~ 896 (1023)
+-+.|..|+|.+++- || +|||||.+-..+|.
T Consensus 154 hc~rGkhRtg~lVgc--------lR-klq~W~lssil~Ey 184 (249)
T KOG1572|consen 154 HCKRGKHRTGCLVGC--------LR-KLQNWSLSSILDEY 184 (249)
T ss_pred ecCCCCcchhhhHHH--------HH-HHhccchhHHHHHH
Confidence 457889999998874 77 99999999888887
No 17
>PLN02413 choline-phosphate cytidylyltransferase
Probab=21.53 E-value=27 Score=37.40 Aligned_cols=27 Identities=19% Similarity=0.180 Sum_probs=24.0
Q ss_pred CCCccccCccccccccccceeEEEEEE
Q psy4365 47 PHYPVLERPRLAKSAEWADSVVLCCLV 73 (1023)
Q Consensus 47 phypvlerprlaksaewadsvvlcclv 73 (1023)
|.+|..||-....+-.|.|-||+.|-.
T Consensus 76 PIm~~~ER~e~V~acKyVDeVV~~aP~ 102 (294)
T PLN02413 76 TVMTEDERYESLRHCKWVDEVIPDAPW 102 (294)
T ss_pred CCCCHHHHHHHHHhcccccEEeeCCCc
Confidence 889999999999999999999986643
No 18
>KOG2732|consensus
Probab=20.70 E-value=1.2e+02 Score=34.15 Aligned_cols=35 Identities=26% Similarity=0.610 Sum_probs=27.9
Q ss_pred ceeEEEeEEEEEEeecc----------------------CccccCCCCc--eecccCCC
Q psy4365 12 FFSFEINFFLFIGVRDQ----------------------GWGGLCSDCS--VQCTPFTS 46 (1023)
Q Consensus 12 ffsfeinfflfigvrdq----------------------gwgglcsdcs--vqctpfts 46 (1023)
-++|++|-..|.|+.-| -||-.|+.|. -+|-||+-
T Consensus 313 Py~~~ld~~~vl~tSGqNvsDl~ry~~~~s~ld~le~tlkw~HvaPTaPDTL~cyPfte 371 (435)
T KOG2732|consen 313 PYEFSLDGARVLGTSGQNVSDLLRYSSKKSGLDALENTLKWGHVAPTAPDTLWCYPFTE 371 (435)
T ss_pred ceEEEEcCEEEEecCCccHHHHhhhcchhhHHHHHhhhheeccccCCCCCccccccccc
Confidence 37888998888887665 3999999987 47988873
Done!