Query psy4365
Match_columns 1023
No_of_seqs 33 out of 35
Neff 1.1
Searched_HMMs 29240
Date Fri Aug 16 23:40:45 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4365.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/4365hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2a1v_A Conserved hypothetical 42.5 8.7 0.0003 34.5 1.5 61 37-99 22-91 (144)
2 2kfp_A Pspto_3016 protein; alp 37.3 15 0.00051 32.1 2.1 60 38-99 16-92 (125)
3 1brv_A Protein G, BRSV-G regio 34.9 9 0.00031 29.1 0.2 10 955-964 9-18 (32)
4 2bt6_A Adrenodoxin 1; rutheniu 31.1 10 0.00036 31.3 0.0 43 31-73 49-94 (108)
5 2gzm_A Glutamate racemase; enz 23.2 14 0.00047 35.0 -0.7 63 22-84 5-88 (267)
6 2jfz_A Glutamate racemase; cel 21.2 40 0.0014 31.5 2.0 62 22-84 2-85 (255)
7 2k1h_A Uncharacterized protein 20.4 77 0.0026 27.5 3.5 50 947-1000 38-87 (94)
8 3kh7_A Thiol:disulfide interch 19.3 18 0.00063 30.7 -0.7 45 30-88 66-110 (176)
9 3hcz_A Possible thiol-disulfid 18.3 28 0.00096 27.2 0.3 11 30-40 39-49 (148)
10 1wj5_A Hypothetical protein (r 17.4 35 0.0012 31.7 0.7 29 949-977 82-110 (120)
No 1
>2a1v_A Conserved hypothetical protein; structural genomics, PSI, protein structure initiative; 2.15A {Deinococcus radiodurans} SCOP: d.198.3.1
Probab=42.52 E-value=8.7 Score=34.47 Aligned_cols=61 Identities=25% Similarity=0.191 Sum_probs=36.0
Q ss_pred CceecccCCCCCCccccCc----c--ccc--cccccceeEEEEEEeechhhhhhhhc-ccchhhhccccccc
Q psy4365 37 CSVQCTPFTSPHYPVLERP----R--LAK--SAEWADSVVLCCLVEFEIPLLRSYFR-EVDIGEYLNKGHWR 99 (1023)
Q Consensus 37 csvqctpftsphypvlerp----r--lak--saewadsvvlcclvefeipllrsyfr-evdigeylnkghwr 99 (1023)
....+.||. |.+||+.-. . .|- ..+..+.|.|-|--| +...|+.-+. .+--+-|+||-||-
T Consensus 22 ga~e~~p~g-~~~~vfkV~~~~~gK~FA~~~~~~~~~~v~lK~~pe-~~~~L~~~~~~~i~PayhmnK~hWv 91 (144)
T 2a1v_A 22 HSLETFPFD-DETLVFKVGYLSKSRMYALTDITQDPLRLSLKVDPE-RGEELRQAHPQSIAPGYHLNKKHWV 91 (144)
T ss_dssp TEEEECCSS-SSEEEEEEEETTEEEEEEEEETTSSSCEEEEECCHH-HHHHHHHHSTTTEEECTTSCTTTEE
T ss_pred CCEEECCCC-CCceEEEeccCCCCcEEEEEEecCCCcEEEEeCCHH-HHHHHHhcCCCeEecCCccCCCeEE
Confidence 345667775 666666543 0 011 112223566666555 5667777665 56677899999994
No 2
>2kfp_A Pspto_3016 protein; alpha, beta, double-WING, structural genomics, PSI-2, protein structure initiative; NMR {Pseudomonas syringae} PDB: 3h9x_A
Probab=37.31 E-value=15 Score=32.12 Aligned_cols=60 Identities=23% Similarity=0.232 Sum_probs=35.5
Q ss_pred ceecccCC-CCCCccccCccccccc------ccc----------ceeEEEEEEeechhhhhhhhcccchhhhccccccc
Q psy4365 38 SVQCTPFT-SPHYPVLERPRLAKSA------EWA----------DSVVLCCLVEFEIPLLRSYFREVDIGEYLNKGHWR 99 (1023)
Q Consensus 38 svqctpft-sphypvlerprlaksa------ewa----------dsvvlcclvefeipllrsyfrevdigeylnkghwr 99 (1023)
...+.||. .|.|+|+-.+.-.|-- ++. +.|-|=|--| ++..||... .+-.|-|+||-||-
T Consensus 16 ~~~~~p~~~~~~~~v~rv~~~gK~FA~~~~~~~~~lg~~~~~~v~~vnlK~~Pe-~~~~Lr~~~-~i~PayhmnK~hWi 92 (125)
T 2kfp_A 16 TKPDHPWEKFPDYAVFRHSDNDKWYALLMDIPAEKIGINGDKRVDVIDLKVQPE-LVGSLRKKP-GIYPAYHMNKEHWI 92 (125)
T ss_dssp CCCBCSCTTCTTCEECCCTTTCCCCCEEEEEEGGGTTCSCCSEEEEEEEECCTT-THHHHHHST-TEEECSSSCSSSEE
T ss_pred CEeECCcCCCCCceEEEEcCCCeEEEEEEecCcccccccccCcccEEEEecCHH-HHHHHHhCC-CCCccccCCCCCeE
Confidence 45677886 7888887665211111 111 2344445433 355677764 57778889999993
No 3
>1brv_A Protein G, BRSV-G region; attachment protein G of bovine respiratory syncytial virus, immunoglobulin-binding protein; NMR {Bovine respiratory syncytial virus} SCOP: j.33.1.1
Probab=34.90 E-value=9 Score=29.10 Aligned_cols=10 Identities=40% Similarity=0.929 Sum_probs=8.2
Q ss_pred cccceeeccc
Q psy4365 955 FRFNFVPCSR 964 (1023)
Q Consensus 955 KELnfvpcsr 964 (1023)
.-|+|||||-
T Consensus 9 q~l~~VPCsi 18 (32)
T 1brv_A 9 QTLPYVPCST 18 (32)
T ss_pred cccccccccc
Confidence 5689999984
No 4
>2bt6_A Adrenodoxin 1; ruthenium(II) bipyridyl complex, intramolecular electron TRA electron transport, metal-binding; HET: RUA; 1.50A {Bos taurus} SCOP: d.15.4.1 PDB: 1ayf_A 3n9y_C* 2jqr_B* 3na0_C*
Probab=31.05 E-value=10 Score=31.32 Aligned_cols=43 Identities=19% Similarity=0.194 Sum_probs=25.9
Q ss_pred cccCCCCceecccC--C-CCCCccccCccccccccccceeEEEEEE
Q psy4365 31 GGLCSDCSVQCTPF--T-SPHYPVLERPRLAKSAEWADSVVLCCLV 73 (1023)
Q Consensus 31 gglcsdcsvqctpf--t-sphypvlerprlaksaewadsvvlcclv 73 (1023)
.|.|..|.|+...= . -|.....|...|....+.++-..|.|.+
T Consensus 49 ~G~CgtC~v~v~~g~~~~l~~~~~~E~~~L~~~~~~~~g~rLaCq~ 94 (108)
T 2bt6_A 49 TLACSTCHLIFEQHIFEKLEAITDEENDMLDLAYGLTDRSRLGCQI 94 (108)
T ss_dssp SSSBSTTEEECCHHHHTTSCCCCHHHHHHHTTCTTCCTTEEEGGGC
T ss_pred CcCcCCCEEEECccccccCCCCCHHHHHHHhCcccCCCCcEeeEEE
Confidence 38999999998742 1 1222223445555556667777777754
No 5
>2gzm_A Glutamate racemase; enzyme, isomerase; HET: DGL; 1.99A {Bacillus anthracis}
Probab=23.19 E-value=14 Score=35.00 Aligned_cols=63 Identities=22% Similarity=0.267 Sum_probs=34.7
Q ss_pred EEEeeccCccccCCCC-ceecccCC-------CCCCccccCc------ccccccc-----ccceeEEEEEEee--chhhh
Q psy4365 22 FIGVRDQGWGGLCSDC-SVQCTPFT-------SPHYPVLERP------RLAKSAE-----WADSVVLCCLVEF--EIPLL 80 (1023)
Q Consensus 22 figvrdqgwgglcsdc-svqctpft-------sphypvlerp------rlaksae-----wadsvvlcclvef--eipll 80 (1023)
-|||-|-|-|||--.- -.+-.|.. +.|.|.-+++ ++.+.++ -+|.+|+||---- -++.|
T Consensus 5 ~IgvfDSGvGGltv~~~i~~~lP~~~~iy~~D~~~~Pyg~~s~~~i~~~~~~~~~~L~~~g~d~iviaCNTas~~~l~~l 84 (267)
T 2gzm_A 5 AIGVIDSGVGGLTVAKELIRQLPKERIIYLGDTARCPYGPRSREEVRQFTWEMTEHLLDLNIKMLVIACNTATAVVLEEM 84 (267)
T ss_dssp CEEEEESSSTTHHHHHHHHHHCTTSCEEEEECTTTCCCTTSCHHHHHHHHHHHHHHHHTTTCSEEEECCHHHHHHHHHHH
T ss_pred cEEEEeCCccHHHHHHHHHHHCCCCCEEEecCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEeCchhhHHHHHHH
Confidence 3899999999984211 11122322 4566655442 2333333 4899999995432 24555
Q ss_pred hhhh
Q psy4365 81 RSYF 84 (1023)
Q Consensus 81 rsyf 84 (1023)
|..+
T Consensus 85 r~~~ 88 (267)
T 2gzm_A 85 QKQL 88 (267)
T ss_dssp HHHC
T ss_pred HHhC
Confidence 5443
No 6
>2jfz_A Glutamate racemase; cell WALL, isomerase, cell shape, peptidoglycan synthesis, peptidoglycan biosynthesis; HET: 003 DGL; 1.86A {Helicobacter pylori} PDB: 2jfx_A* 2jfy_A* 2w4i_A*
Probab=21.23 E-value=40 Score=31.53 Aligned_cols=62 Identities=18% Similarity=0.213 Sum_probs=34.8
Q ss_pred EEEeeccCccccC---------CCCceecccCCCCCCccccC------cccccccc-----ccceeEEEEEEe--echhh
Q psy4365 22 FIGVRDQGWGGLC---------SDCSVQCTPFTSPHYPVLER------PRLAKSAE-----WADSVVLCCLVE--FEIPL 79 (1023)
Q Consensus 22 figvrdqgwgglc---------sdcsvqctpftsphypvler------prlaksae-----wadsvvlcclve--feipl 79 (1023)
-|||-|.|-|||- ++...-+- ..++|.|.-++ +++.+.++ -+|.+|+||--- +-++.
T Consensus 2 ~igvfDSG~GGltv~~~l~~~lP~~~~iy~-~D~~~~Pyg~~s~~~i~~~~~~~~~~L~~~g~d~iviaCNTa~~~~~~~ 80 (255)
T 2jfz_A 2 KIGVFDSGVGGFSVLKSLLKARLFDEIIYY-GDSARVPYGTKDPTTIKQFGLEALDFFKPHEIELLIVACNTASALALEE 80 (255)
T ss_dssp EEEEEESSSTTHHHHHHHHHTTCCSEEEEE-ECTTTCCCTTSCHHHHHHHHHHHHHHHGGGCCSCEEECCHHHHHHTHHH
T ss_pred cEEEEECCccHHHHHHHHHHHCCCCCEEEE-eCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEeCchhhHHHHHH
Confidence 4899999999974 34433331 13455564433 22223332 489999999432 13455
Q ss_pred hhhhh
Q psy4365 80 LRSYF 84 (1023)
Q Consensus 80 lrsyf 84 (1023)
||..+
T Consensus 81 lr~~~ 85 (255)
T 2jfz_A 81 MQKYS 85 (255)
T ss_dssp HHHHC
T ss_pred HHHhC
Confidence 55444
No 7
>2k1h_A Uncharacterized protein Ser13; structural genomics, unknown function, PSI-2, protein struct initiative; NMR {Staphylococcus epidermidis}
Probab=20.45 E-value=77 Score=27.49 Aligned_cols=50 Identities=10% Similarity=0.213 Sum_probs=37.8
Q ss_pred chhhhhhccccceeeccceeeeeeEEEecccccccchhhHHHHHHHHHHHHHhh
Q psy4365 947 DYNMVRLDFRFNFVPCSRVMFSDVFVVTEKDLVTEKDLGHVLSNLMEGLMQVLT 1000 (1023)
Q Consensus 947 DYNMLKRMKELnfvpcsrvmfsdvfvvtekdlvtekdlghvlsnlmeglmqvlt 1000 (1023)
+--+-++|.++.+| .+|+|.+=||--+|+ .+-|..++.-.+.+-+|+.|.
T Consensus 38 ~SPLA~~LF~i~gV--k~Vf~g~dFITVtK~--~~~dW~~ikp~I~~~I~~~~~ 87 (94)
T 2k1h_A 38 QPEFINRLFEIEGV--KSIFYVLDFISIDKE--DNANWNELLPQIENTFAKSNL 87 (94)
T ss_dssp SCHHHHHHHTSTTE--EEEEEETTEEEEEEC--TTCCHHHHHHHHHHHHHHHC-
T ss_pred CCHHHHHhhCCCCe--eEEEEeCCEEEEecC--CCCCHHHHHHHHHHHHHHHHH
Confidence 44578899999998 589988777766664 256788888888888888764
No 8
>3kh7_A Thiol:disulfide interchange protein DSBE; TRX-like, thiol-disulfide exchange, cell inner membrane, CYT C-type biogenesis, disulfide bond; 1.75A {Pseudomonas aeruginosa} PDB: 3kh9_A
Probab=19.27 E-value=18 Score=30.70 Aligned_cols=45 Identities=24% Similarity=0.502 Sum_probs=23.2
Q ss_pred ccccCCCCceecccCCCCCCccccCccccccccccceeEEEEEEeechhhhhhhhcccc
Q psy4365 30 WGGLCSDCSVQCTPFTSPHYPVLERPRLAKSAEWADSVVLCCLVEFEIPLLRSYFREVD 88 (1023)
Q Consensus 30 wgglcsdcsvqctpftsphypvlerprlaksaewadsvvlcclvefeipllrsyfrevd 88 (1023)
|+.-|..|..+ -|.|.+-++- +..|+..-++-+...++.|..+.+
T Consensus 66 ~a~~C~~C~~~-------------~~~l~~l~~~-~v~vv~vs~~d~~~~~~~~~~~~~ 110 (176)
T 3kh7_A 66 WGTWCPSCRVE-------------HPELTRLAEQ-GVVIYGINYKDDNAAAIKWLNELH 110 (176)
T ss_dssp ECTTCHHHHHH-------------HHHHHHHHHT-TCEEEEEEESCCHHHHHHHHHHTT
T ss_pred ECCcCHHHHHH-------------HHHHHHHHHC-CCEEEEEeCCCCHHHHHHHHHHcC
Confidence 45567777654 2334333332 555555444545555666665544
No 9
>3hcz_A Possible thiol-disulfide isomerase; APC61559.2, cytophaga hutchinsoni structural genomics, PSI-2, protein structure initiative; 1.88A {Cytophaga hutchinsonii}
Probab=18.32 E-value=28 Score=27.16 Aligned_cols=11 Identities=27% Similarity=1.129 Sum_probs=7.5
Q ss_pred ccccCCCCcee
Q psy4365 30 WGGLCSDCSVQ 40 (1023)
Q Consensus 30 wgglcsdcsvq 40 (1023)
|+.-|..|..+
T Consensus 39 ~~~~C~~C~~~ 49 (148)
T 3hcz_A 39 WDSQCGHCQQE 49 (148)
T ss_dssp ECGGGCTTCSH
T ss_pred ECCCCccHHHH
Confidence 56678888643
No 10
>1wj5_A Hypothetical protein (riken cDNA 0610009H20); winged helix, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.4.5.59
Probab=17.42 E-value=35 Score=31.67 Aligned_cols=29 Identities=24% Similarity=0.154 Sum_probs=25.6
Q ss_pred hhhhhccccceeeccceeeeeeEEEeccc
Q psy4365 949 NMVRLDFRFNFVPCSRVMFSDVFVVTEKD 977 (1023)
Q Consensus 949 NMLKRMKELnfvpcsrvmfsdvfvvtekd 977 (1023)
+.++.|.|.|||-|----|-|||.||++|
T Consensus 82 eAi~~Lqe~G~VfqK~~~~d~lYyVT~qD 110 (120)
T 1wj5_A 82 NALQLLQEKGLVFQRDSGSDKLYYVTTKD 110 (120)
T ss_dssp HHHHHHHHHTSEECSSCSSSCCBEECSSS
T ss_pred HHHHHHHHCCEEEeccCCccceEEeeccc
Confidence 67899999999999877777899999887
Done!