Query psy4365
Match_columns 1023
No_of_seqs 33 out of 35
Neff 1.1
Searched_HMMs 13730
Date Fri Aug 16 23:41:03 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4365.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/4365hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2owpa1 d.17.4.18 (A:1-128) Hy 42.2 3.7 0.00027 31.8 1.1 30 869-898 1-30 (128)
2 d1igtb3 b.1.1.2 (B:236-361) Im 27.6 17 0.0013 28.6 2.8 39 34-74 2-42 (119)
3 d1krha3 d.15.4.2 (A:2-105) Ben 23.4 7.7 0.00056 30.9 -0.1 41 31-72 42-83 (104)
4 d1wj5a_ a.4.5.59 (A:) OB fold- 21.6 12 0.00085 32.6 0.7 30 948-977 81-110 (120)
5 d2qwxa1 c.23.5.3 (A:1-230) Qui 20.3 17 0.0013 30.4 1.5 71 57-129 87-163 (230)
6 d1ntha_ c.1.25.1 (A:) Monometh 17.9 11 0.00078 37.8 -0.5 72 874-946 84-159 (457)
7 d1xkta_ c.69.1.22 (A:) Fatty a 17.2 17 0.0012 27.5 0.7 37 26-63 244-280 (286)
8 d1idra_ a.1.1.1 (A:) Protozoan 14.8 14 0.001 29.3 -0.3 36 76-122 37-72 (127)
9 d1dlya_ a.1.1.1 (A:) Protozoan 14.7 15 0.0011 28.1 -0.3 36 76-122 25-60 (121)
10 d3b7ca1 d.17.4.16 (A:1-121) Un 14.5 36 0.0027 24.8 2.0 24 875-898 1-24 (121)
No 1
>d2owpa1 d.17.4.18 (A:1-128) Hypothetical protein BxeB1374 {Burkholderia xenovorans [TaxId: 36873]}
Probab=42.20 E-value=3.7 Score=31.82 Aligned_cols=30 Identities=13% Similarity=0.208 Sum_probs=25.1
Q ss_pred eccccccCHHHHHHHHHHhhhhhccchhhh
Q psy4365 869 ANNERNLDKAEIRTALQNWQMGIIMNEDET 898 (1023)
Q Consensus 869 ~n~eRnLDKAEIRtALQNWQMsLLmnE~k~ 898 (1023)
|.++++-.+|||+.+++.|+-++..+|-+.
T Consensus 1 ~~~~~p~~~a~I~a~~~~~~~A~~~~D~~~ 30 (128)
T d2owpa1 1 MEVNQPDIVAQVQAAFVEYERALVENDIEA 30 (128)
T ss_dssp CCBSCHHHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred CCCCcccHHHHHHHHHHHHHHHHHcCCHHH
Confidence 456677789999999999999998887743
No 2
>d1igtb3 b.1.1.2 (B:236-361) Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma {Mouse (Mus musculus), gamma2 [TaxId: 10090]}
Probab=27.57 E-value=17 Score=28.62 Aligned_cols=39 Identities=21% Similarity=0.421 Sum_probs=20.3
Q ss_pred CCCCceecccCCCCCCcccc--CccccccccccceeEEEEEEe
Q psy4365 34 CSDCSVQCTPFTSPHYPVLE--RPRLAKSAEWADSVVLCCLVE 74 (1023)
Q Consensus 34 csdcsvqctpftsphypvle--rprlaksaewadsvvlcclve 74 (1023)
|+.|. |.+-..+..|-+. .|.......-.+.+.|+|+|.
T Consensus 2 c~~~~--c~~~~~~~~PsV~i~pPs~~e~~~~~~~~~L~C~v~ 42 (119)
T d1igtb3 2 CPPCK--CPAPNLLGGPSVFIFPPKIKDVLMISLSPIVTCVVV 42 (119)
T ss_dssp CCCCS--CCCSCCCCCCEEEEECCCHHHHHCTTSCCEEEEEEE
T ss_pred CCCCc--CCCCcCCcCCEEEEECCChHHhcccCCceEEEEEee
Confidence 66663 4443333434322 233333223357889999986
No 3
>d1krha3 d.15.4.2 (A:2-105) Benzoate dioxygenase reductase, N-terminal domain {Acinetobacter sp. [TaxId: 472]}
Probab=23.44 E-value=7.7 Score=30.94 Aligned_cols=41 Identities=22% Similarity=0.335 Sum_probs=23.4
Q ss_pred cccCCCCceecccCCCCCCcc-ccCccccccccccceeEEEEE
Q psy4365 31 GGLCSDCSVQCTPFTSPHYPV-LERPRLAKSAEWADSVVLCCL 72 (1023)
Q Consensus 31 gglcsdcsvqctpftsphypv-lerprlaksaewadsvvlccl 72 (1023)
+|.|.-|.++..-= ..+++. -+.+......|.+.-.+|.|.
T Consensus 42 ~G~CgtC~v~v~~G-~~~~~~~~~~~~~l~~~e~~~g~~LaCq 83 (104)
T d1krha3 42 EGECGTCRAFCESG-NYDMPEDNYIEDALTPEEAQQGYVLACQ 83 (104)
T ss_dssp SSSSCTTEEEEEEC-CEECCGGGSCTTTCCHHHHHHTEEETTT
T ss_pred CcccCCCEEEeeeC-cccccccccccccCCHHHHhcCcEEeee
Confidence 58999999988653 223322 112222334566666677775
No 4
>d1wj5a_ a.4.5.59 (A:) OB fold-containing protein 1, Obfc1 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=21.59 E-value=12 Score=32.64 Aligned_cols=30 Identities=23% Similarity=0.125 Sum_probs=26.7
Q ss_pred hhhhhhccccceeeccceeeeeeEEEeccc
Q psy4365 948 YNMVRLDFRFNFVPCSRVMFSDVFVVTEKD 977 (1023)
Q Consensus 948 YNMLKRMKELnfvpcsrvmfsdvfvvtekd 977 (1023)
-+.++.|.|.|+|-|----|-|||.||++|
T Consensus 81 KeAi~~Lqe~G~VFqK~~~~D~lYyVT~qD 110 (120)
T d1wj5a_ 81 KNALQLLQEKGLVFQRDSGSDKLYYVTTKD 110 (120)
T ss_dssp HHHHHHHHHHTSEECSSCSSSCCBEECSSS
T ss_pred HHHHHHHHHCCEEEecCCCccceEEeeccc
Confidence 467899999999999888888899999987
No 5
>d2qwxa1 c.23.5.3 (A:1-230) Quinone reductase type 2 (menadione reductase) {Human (Homo sapiens) [TaxId: 9606]}
Probab=20.31 E-value=17 Score=30.35 Aligned_cols=71 Identities=18% Similarity=0.186 Sum_probs=42.7
Q ss_pred ccccccccceeEEEEEEee-chh-hhhhhhcccchh----hhccccccchhhccccccccceeecCCcCcCCCCCCCCC
Q psy4365 57 LAKSAEWADSVVLCCLVEF-EIP-LLRSYFREVDIG----EYLNKGHWRLSEALNISNYLNYVFGGGRTPYPSDGRSPS 129 (1023)
Q Consensus 57 laksaewadsvvlcclvef-eip-llrsyfrevdig----eylnkghwrlsealnisnylnyvfgggrtpypsdgrsps 129 (1023)
+.+--+|||.||+.|-+-+ -+| .|..||..|-.- .|-..+++.+. .+-.-++-...||...+|...|..+.
T Consensus 87 ~~~~l~~AD~iv~~~P~y~~~~pa~lK~~iDrV~~~g~af~~~~~~~~g~l--~~kk~~~i~t~g~~~~~~~~~g~~~~ 163 (230)
T d2qwxa1 87 EQKKVREADLVIFQFPLYWFSVPAILKGWMDRVLCQGFAFDIPGFYDSGLL--QGKLALLSVTTGGTAEMYTKTGVNGD 163 (230)
T ss_dssp HHHHHHHCSEEEEEEECBTTBCCHHHHHHHHHHSCBTTTBCSSCCGGGCTT--TTCEEEEEEECSSCTGGGSTTSTTCC
T ss_pred HHHHHHhCCEEEEEeCcccccCCHHHHHHHHHhcccCcccccCCCCCcccc--cCCeEEEEeccCCchhhccccccccc
Confidence 3455689999999886653 444 688888876321 12122333322 33444555667777778887776543
No 6
>d1ntha_ c.1.25.1 (A:) Monomethylamine methyltransferase MtmB {Archaeon Methanosarcina barkeri [TaxId: 2208]}
Probab=17.86 E-value=11 Score=37.76 Aligned_cols=72 Identities=21% Similarity=0.230 Sum_probs=49.4
Q ss_pred ccCHHHHHHHHHHhhhhhccchhhhhhhhhcccccCCCCc--cccccccc--cccccccccccccCCCcccccccCc
Q psy4365 874 NLDKAEIRTALQNWQMGIIMNEDETKRAMARQRSVGDGCN--DQTVLQQQ--QAQQVFKKPANKRREPRRHTLQNGI 946 (1023)
Q Consensus 874 nLDKAEIRtALQNWQMsLLmnE~k~Kr~lR~~RGSADG~s--ssSss~~~--~laL~pKR~~rkRrEpRRHTLqNGV 946 (1023)
-+..+||+.|+.|=|.-++.++.++.+.+| .|+.+|--- .+--+.-. +..+.-.-+.+--.|||-.||-||+
T Consensus 84 kyTEeEv~~ai~napre~~~G~GkDav~lr-~Rs~gD~~~pivqGGptG~P~sed~F~~~h~SYA~ep~VDtiv~Gv 159 (457)
T d1ntha_ 84 KYTEDEIWDAINNVQKEFVLGTGRDAVNVR-KRSVGDKAKPIVQGGPTGSPISEDVFMPVHMSYALEKEVDTIVNGV 159 (457)
T ss_dssp CCCHHHHHHHHTTCCCEEEESCGGGCEEEE-CCCTTCSSCCEEEESCTTCEECGGGHHHHHHHHHTCTTCCEEECCE
T ss_pred hhhHHHHHHHHhcCCceEEeccCccceeee-ccCCCCCCCceeecCCCCCCCcHHHHHHHHHhhhcccchhhhhhcc
Confidence 578899999999999999999997766565 888888652 22222111 1222222234455799999999997
No 7
>d1xkta_ c.69.1.22 (A:) Fatty acid synthase {Human (Homo sapiens) [TaxId: 9606]}
Probab=17.25 E-value=17 Score=27.48 Aligned_cols=37 Identities=19% Similarity=0.268 Sum_probs=25.2
Q ss_pred eccCccccCCCCceecccCCCCCCccccCccccccccc
Q psy4365 26 RDQGWGGLCSDCSVQCTPFTSPHYPVLERPRLAKSAEW 63 (1023)
Q Consensus 26 rdqgwgglcsdcsvqctpftsphypvlerprlaksaew 63 (1023)
.+++|...|.. .+++.....-||.++|.|.+++-|++
T Consensus 244 ~~~~~~~~~~~-~~~~~~i~g~H~~~le~p~~~~va~~ 280 (286)
T d1xkta_ 244 ADYNLSQVCDG-KVSVHVIEGDHRTLLEGSGLESIISI 280 (286)
T ss_dssp SSTTGGGTBCS-CEEEEEESSCTTTTTC-CHHHHHHHH
T ss_pred HHHHHHHhCCC-CCEEEEEcCCCccccCCccHHHHHHH
Confidence 34578888753 35565556789999999987766554
No 8
>d1idra_ a.1.1.1 (A:) Protozoan/bacterial hemoglobin {Mycobacterium tuberculosis, HbN [TaxId: 1773]}
Probab=14.83 E-value=14 Score=29.31 Aligned_cols=36 Identities=17% Similarity=0.433 Sum_probs=25.1
Q ss_pred chhhhhhhhcccchhhhccccccchhhccccccccceeecCCcCcCC
Q psy4365 76 EIPLLRSYFREVDIGEYLNKGHWRLSEALNISNYLNYVFGGGRTPYP 122 (1023)
Q Consensus 76 eipllrsyfrevdigeylnkghwrlsealnisnylnyvfgggrtpyp 122 (1023)
.-|.|+.||..+|+.+.-. .+..|+.++|||-. .|+
T Consensus 37 ~d~~l~~~F~~~d~~~~~~----------~~~~fl~~~~GGp~-~Y~ 72 (127)
T d1idra_ 37 ADDQLSAFFSGTNMSRLKG----------KQVEFFAAALGGPE-PYT 72 (127)
T ss_dssp HCTTTGGGGTTCCHHHHHH----------HHHHHHHHHTTCSC-CCC
T ss_pred cChHHHHhcCCCCHHHHHH----------HHHHHHHHHhCcCC-CCC
Confidence 4488888888777654332 25789999998753 575
No 9
>d1dlya_ a.1.1.1 (A:) Protozoan/bacterial hemoglobin {Green alga (Chlamydomonas eugametos) [TaxId: 3054]}
Probab=14.67 E-value=15 Score=28.12 Aligned_cols=36 Identities=22% Similarity=0.500 Sum_probs=25.0
Q ss_pred chhhhhhhhcccchhhhccccccchhhccccccccceeecCCcCcCC
Q psy4365 76 EIPLLRSYFREVDIGEYLNKGHWRLSEALNISNYLNYVFGGGRTPYP 122 (1023)
Q Consensus 76 eipllrsyfrevdigeylnkghwrlsealnisnylnyvfgggrtpyp 122 (1023)
.-|.|+.||.++|+.+... .+.+|+.++||| ...|+
T Consensus 25 ~d~~l~~~F~~~d~~~~~~----------~~~~f~~~~~GG-p~~Y~ 60 (121)
T d1dlya_ 25 ADPTVSTYFSNTDMKVQRS----------KQFAFLAYALGG-ASEWK 60 (121)
T ss_dssp TCTTTGGGGTTSCHHHHHH----------HHHHHHHHHTTS-SSCCC
T ss_pred cCHHHHHhCCCCCHHHHHH----------HHHHHHHHHhCC-Ccccc
Confidence 4478888898888766532 245789999986 45564
No 10
>d3b7ca1 d.17.4.16 (A:1-121) Uncharacterized protein SO0125 {Shewanella oneidensis [TaxId: 70863]}
Probab=14.50 E-value=36 Score=24.77 Aligned_cols=24 Identities=8% Similarity=0.071 Sum_probs=19.6
Q ss_pred cCHHHHHHHHHHhhhhhccchhhh
Q psy4365 875 LDKAEIRTALQNWQMGIIMNEDET 898 (1023)
Q Consensus 875 LDKAEIRtALQNWQMsLLmnE~k~ 898 (1023)
|..+||+.+|+.|..++--+|-+.
T Consensus 1 m~~~eI~~~i~~~~~A~~~gD~d~ 24 (121)
T d3b7ca1 1 MPTDDIVQLLKGQEEAWNRGDLDA 24 (121)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred CCHHHHHHHHHHHHHHHHcCCHHH
Confidence 346899999999999998777643
Done!