RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy4365
         (1023 letters)



>gnl|CDD|220964 pfam11068, DUF2869, Protein of unknown function (DUF2869).  This
           bacterial family of proteins has no known function.
          Length = 131

 Score = 35.3 bits (82), Expect = 0.043
 Identities = 17/73 (23%), Positives = 30/73 (41%), Gaps = 13/73 (17%)

Query: 877 KAEIRTALQNWQMGIIMNE-----DETKRAMARQRSVGDGCNDQTVLQQQQAQQVFKKPA 931
           K E++  LQ  Q+  +  E      + ++A+   R        Q+  Q +Q QQ  ++  
Sbjct: 18  KEELQAELQE-QLTQLEQELQQLEFQGQKAIKEIRK-------QSAQQIEQIQQQVEQER 69

Query: 932 NKRREPRRHTLQN 944
            KR E +   L  
Sbjct: 70  AKRLEQKNQLLFQ 82


>gnl|CDD|226039 COG3508, HmgA, Homogentisate 1,2-dioxygenase [Secondary metabolites
           biosynthesis, transport, and catabolism].
          Length = 427

 Score = 33.6 bits (77), Expect = 0.50
 Identities = 27/87 (31%), Positives = 38/87 (43%), Gaps = 5/87 (5%)

Query: 74  EFEIPLLRSYFREVDIGEYLNKGHWRLSEALNISNYLNYV-FGGGRTPYPSDGRSPSPTS 132
           +F+ P+ R    E    + + K H  L       + L+ V + G   PY  D R  +P  
Sbjct: 221 DFKTPVARYEDSEGPT-QLVVKTHGGLWAVELDHSPLDVVAWHGNLAPYKYDLRDFNP-- 277

Query: 133 EVGYGSYRSTTPSIFTLDNATSDNEGT 159
            +G  SY    PSIFT+  A SD  G 
Sbjct: 278 -IGTISYDHPDPSIFTVLTAPSDTPGF 303


>gnl|CDD|223872 COG0801, FolK, 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase
           [Coenzyme metabolism].
          Length = 160

 Score = 30.3 bits (69), Expect = 2.8
 Identities = 12/39 (30%), Positives = 16/39 (41%), Gaps = 8/39 (20%)

Query: 25  VRDQGWGG--------LCSDCSVQCTPFTSPHYPVLERP 55
           VR + WG         L  D  ++    T PH  +LER 
Sbjct: 84  VRSERWGPRTLDLDILLYGDEVIETPRLTLPHPRMLERA 122


>gnl|CDD|240436 PTZ00486, PTZ00486, apyrase Superfamily; Provisional.
          Length = 352

 Score = 30.8 bits (70), Expect = 3.5
 Identities = 19/83 (22%), Positives = 32/83 (38%), Gaps = 5/83 (6%)

Query: 120 PYPSDGRSPSPTSEVGYGSYRSTTPS-----IFTLDNATSDNEGTLSSTRINKGTLSSRI 174
              +  R         Y SY   +P      +  LD A+ D EG    +++ KGT+  + 
Sbjct: 30  SIQNTPRYNGVLKMSNYRSYNKKSPLFRVALVADLDKASKDKEGKKWRSKVIKGTIFRQG 89

Query: 175 NKGTLSSTRINKGTLSSRINKGT 197
           N  +   +      L S +N+G 
Sbjct: 90  NGWSFRESEDESFELQSGLNEGG 112


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.310    0.125    0.331 

Gapped
Lambda     K      H
   0.267   0.0779    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 45,176,762
Number of extensions: 4191750
Number of successful extensions: 2225
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2220
Number of HSP's successfully gapped: 38
Length of query: 1023
Length of database: 10,937,602
Length adjustment: 107
Effective length of query: 916
Effective length of database: 6,191,724
Effective search space: 5671619184
Effective search space used: 5671619184
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 64 (28.3 bits)