RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy4365
(1023 letters)
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 52.2 bits (124), Expect = 8e-07
Identities = 68/512 (13%), Positives = 150/512 (29%), Gaps = 165/512 (32%)
Query: 639 RINKGTLSSRINKGTLSSTRINKGTLSSRINKGTLSSTRINKGTLSSRINKGTLSSTRIN 698
RIN L S I + + + + R ++ + K +S R+ ++
Sbjct: 88 RINYKFLMSPIKTEQRQPSMMTRMYIEQR-DRLYNDNQVFAKYNVS-RLQP----YLKLR 141
Query: 699 KGTLSSRINKG-----------------TLSSTRINKGTLSSRI---NKGTLSSTR---I 735
+ L R K S ++ + + +I N +S
Sbjct: 142 QALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKV-QCKMDFKIFWLNLKNCNSPETVLE 200
Query: 736 NKGTLSSRINKGTLSSTRINKGTLSSRINKGTLSSTRINKGTLSSRINKGTL-------S 788
L +I+ S + + + RI+ R+ L S+ + L +
Sbjct: 201 MLQKLLYQIDPNWTSRSDHSS-NIKLRIHSIQAELRRL----LKSKPYENCLLVLLNVQN 255
Query: 789 STRINKGTLSSRINKGTLSSTRINKGTLSSRINKGTLSSTRINK--GTLSSRINKGTLSS 846
+ N LS +I L +TR K ++ ++ T + ++ TL+ K L
Sbjct: 256 AKAWNAFNLSCKI----LLTTR-FKQ-VTDFLSAATTTHISLDHHSMTLTPDEVKSLLLK 309
Query: 847 -TRINKGTLSSRINKGT-LRIGLIA----------------NNER----------NLDKA 878
L + R+ +IA N ++ L+ A
Sbjct: 310 YLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPA 369
Query: 879 EIRTALQN------------------WQ------MGIIMNEDETKRAMARQRSVGDGCND 914
E R W + +++N+ + +Q +
Sbjct: 370 EYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQP------KE 423
Query: 915 QTV----LQQQQAQQVFKKPA------NKRREPR---------------------RH--T 941
T+ + + ++ + A + P+ H
Sbjct: 424 STISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKN 483
Query: 942 LQNGIDYNMVR---LDFRF--------NFVPCSRVMFSDVFVVTE--KDLVTEKD--LGH 986
+++ + R LDFRF + + + + K + + D
Sbjct: 484 IEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYER 543
Query: 987 VLSNLMEGLMQVLTAVSSIEGNVSTTSTKHSS 1018
+++ +++ L + IE N+ +K++
Sbjct: 544 LVNAILDFLPK-------IEENL--ICSKYTD 566
Score = 42.9 bits (100), Expect = 6e-04
Identities = 33/194 (17%), Positives = 63/194 (32%), Gaps = 38/194 (19%)
Query: 841 KGTLSSTRINKGTLSSRINKGTLRI-GLIANNERNLDKAEIRTALQ---NWQMGIIMNED 896
K LS I+ +S GTLR+ + + + + + + L+ + M I E
Sbjct: 43 KSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQ 102
Query: 897 ETKRAMARQRSVGDGCNDQTVLQQQQAQQVFKKPANKRREPRRHTLQNGID--------- 947
RQ S+ + + QVF K N R L+ +
Sbjct: 103 -------RQPSMMTRMYIEQRDRLYNDNQVFAK-YNVSRLQPYLKLRQALLELRPAKNVL 154
Query: 948 -YNM-----------VRLDFRFNFVPCSRVMFSDVFVVTEKDLVTEKDLGHVLSNLMEGL 995
+ V L ++ M +F + K+ + + + +L L+ +
Sbjct: 155 IDGVLGSGKTWVALDVCLSYKV-----QCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQI 209
Query: 996 MQVLTAVSSIEGNV 1009
T+ S N+
Sbjct: 210 DPNWTSRSDHSSNI 223
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 48.1 bits (114), Expect = 2e-05
Identities = 58/297 (19%), Positives = 92/297 (30%), Gaps = 108/297 (36%)
Query: 14 SFEINF-----FLF-IGVRDQGWGGLCSDCSVQCTPFTSPHYPVLERPRLAKSAEWADSV 67
SF ++ LF IGVR + P TS P + + DS+
Sbjct: 291 SFFVSVRKAITVLFFIGVRCY-----------EAYPNTSL------PPSILE-----DSL 328
Query: 68 VLCCLVEFEI------PLL--RSYFREVDIGEYLNK--GHWRLSEALNIS--N-YLNYVF 114
E P+L + +E + +Y+NK H + + IS N N V
Sbjct: 329 --------ENNEGVPSPMLSISNLTQE-QVQDYVNKTNSHLPAGKQVEISLVNGAKNLVV 379
Query: 115 GGGRTPYPSD----------GRSPS-------PTSE---VGYGSY-RSTTPSIF---TLD 150
G P ++PS P SE + +P F L
Sbjct: 380 SG----PPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASP--FHSHLLV 433
Query: 151 NATSDNEGTLSSTRINKGTLSSRINKGTLS----ST------RINKGTLSSRINKGTLSS 200
A+ L ++ N + T R+ G++S RI +
Sbjct: 434 PASDLINKDLVKNNVS-------FNAKDIQIPVYDTFDGSDLRVLSGSISERIVD-CIIR 485
Query: 201 TRIN-KGTLSSRINK----GTLSSTRINKGTLSSRINKGTLSSTR-INKGTLSSRIN 251
+ + T + G ++ + G L+ R GT R I GTL +
Sbjct: 486 LPVKWETTTQFKATHILDFGPGGASGL--GVLTHRNKDGT--GVRVIVAGTLDINPD 538
Score = 42.3 bits (99), Expect = 0.001
Identities = 28/164 (17%), Positives = 43/164 (26%), Gaps = 69/164 (42%)
Query: 9 KAKFFSFEINFFLFIGVRDQGWGGLCSDCSVQCTPFTSPHYPVLERPRLAKSAEWADSVV 68
K KF N FL + PF S L +++ + +
Sbjct: 413 KLKF----SNRFLPVAS-----------------PFHSHL--------LVPASDLINKDL 443
Query: 69 LCCLVEFE-----IPL--------LRSYFREVDIGEYLNKG------HWRLSEALNISNY 109
+ V F IP+ LR I E + W + ++
Sbjct: 444 VKNNVSFNAKDIQIPVYDTFDGSDLRVL--SGSISERIVDCIIRLPVKWETTTQFKATHI 501
Query: 110 LNYVFG-------GGRTPYPSDGR----------SPSPTSEVGY 136
L FG G T DG +P + G+
Sbjct: 502 L--DFGPGGASGLGVLTHRNKDGTGVRVIVAGTLDINPDDDYGF 543
Score = 35.8 bits (82), Expect = 0.085
Identities = 20/71 (28%), Positives = 26/71 (36%), Gaps = 12/71 (16%)
Query: 65 DSVVLCCLVEFEIPLLRSYFREVDI----GEYLNKGHWRLSEALN-ISNYLNYVFGGGRT 119
D V+ CL EFE Y DI + L + L + I NY+ R
Sbjct: 81 DQVLNLCLTEFE----NCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKR- 135
Query: 120 PYPSDGRSPSP 130
P D +S S
Sbjct: 136 --PFDKKSNSA 144
>1wxr_A Haemoglobin protease; hemoglobine protease, autotransporter, beta
helix, heme uptake, spate, hydrolase; 2.20A {Escherichia
coli} PDB: 3ak5_A
Length = 1048
Score = 36.5 bits (83), Expect = 0.056
Identities = 58/596 (9%), Positives = 144/596 (24%), Gaps = 8/596 (1%)
Query: 203 INKGTLSSRINKGTLSSTRINKGTLSSRINKGTLSSTRINKGTLSSRINKGTLS-STRIN 261
+ KG +I +GTL+ ++ G + + + +
Sbjct: 344 WTGAGIVVDNGVSVNWQVNGVKGDNLHKIGEGTLTVQGTGINEGGLKVGDGKVVLNQQAD 403
Query: 262 KGTLSSRINKGTLSSTRINKGTLSSRINKGTLSSTRINKGTLSSRINKGTLSSTRINKGT 321
+ ++S R R S GTL +N +L+ ++
Sbjct: 404 NKGQVQAFSSVNIASGRPTVVLTDERQVNPDTVSWGYRGGTLD--VNGNSLTFHQLKAAD 461
Query: 322 LSSRINKGTLSSTRINKGTLSSRINKGTLSSTRINKGTLSSRINKGTLSSTRINKGTLSS 381
+ + I + KGT + + + L
Sbjct: 462 YGAVLANNVDKRATITLDYALRADKVALNGWSESGKGTAGNLYKYNNPYTNTTDYFILKQ 521
Query: 382 RINKGTLSSTRINKGTLSSRINKGTLSSTRINKGTLSSRINKGTLSSTRINKGTLSSRIN 441
+ N ++G ++ + + G L L +
Sbjct: 522 STYGYFPTDQSSNATWEFVGHSQGDAQKLVADRFNTAGYLFHGQLKGNLNVDNRLPEGVT 581
Query: 442 KGTLSSTRINKGTLSSRINKGTLSSTRINKGTLSSRINKGTLSSTR----INKGTLSSRI 497
+ + ++ N +++ L+++ + + T S+
Sbjct: 582 GALVMDGAADISGTFTQENGRLTLQGHPVIHAYNTQSVADKLAASGDHSVLTQPTSFSQE 641
Query: 498 NKGTLSSTRINKGTLSSRINKGTLSSTRINKGTLSSRINKGTLSSTRINKGTLSSRINKG 557
+ S T ++ G ++ +S + G +
Sbjct: 642 DWENRSFTFDRLSLKNTDFGLGRNATLNTTIQADNSSVTLGDSRVFIDKNDGQGTAFTLE 701
Query: 558 TLSSTRINKGTLSSRINKGTLSSTRINKGTLSSRINKGTLSSTRINKGTLSSRINKGTLS 617
+S S L + + +ST +N + S+ + TL+
Sbjct: 702 EGTSVATKDADKSVFNGTVNLDNQSVLNINDIFNGGIQANNST-VNISSDSAVLGNSTLT 760
Query: 618 STRINKGTLSSRINKGTLSSTRINKGTLSSRINKGTLSSTRINKGTLSSRINKGTLSSTR 677
ST +N ++ + + S + ++ + L
Sbjct: 761 STALNLNKGANALASQSFVSDGPVNISDATLSLNSRPDEVSHTLLPVYDYAGSWNLKGDD 820
Query: 678 INKGTLSSRINKGTLSSTRINKGTLSSRINKGTLSSTRINKGTLSSRINKGTLSSTRINK 737
+ G ++ TL + + + S +
Sbjct: 821 ARLNVGPYSMLSGNINVQDKGTVTLGGEGELSPDLTLQNQMLYSLFNGYRNIWSGSLNAP 880
Query: 738 GTLSSRINKGTLSSTRINKGTLSSRINKGTLSSTRINKGTLSSRINKGTLSSTRIN 793
S + + G + + TL++ S+ +
Sbjct: 881 DATVSMTDTQWSMNGNSTAGNMKLNRTIVGFNGGTSPFTTLTTDNLDAVQSAFVMR 936
Score = 36.2 bits (82), Expect = 0.078
Identities = 58/589 (9%), Positives = 144/589 (24%), Gaps = 8/589 (1%)
Query: 153 TSDNEGTLSSTRINKGTLSSRINKGTLSSTRINKGTLSSRINKGTLS-STRINKGTLSSR 211
+ KG +I +GTL+ ++ G + + + +
Sbjct: 351 VDNGVSVNWQVNGVKGDNLHKIGEGTLTVQGTGINEGGLKVGDGKVVLNQQADNKGQVQA 410
Query: 212 INKGTLSSTRINKGTLSSRINKGTLSSTRINKGTLSSRINKGTLSSTRINKGTLSSRINK 271
+ ++S R R S GTL +N +L+ ++ + +
Sbjct: 411 FSSVNIASGRPTVVLTDERQVNPDTVSWGYRGGTLD--VNGNSLTFHQLKAADYGAVLAN 468
Query: 272 GTLSSTRINKGTLSSRINKGTLSSTRINKGTLSSRINKGTLSSTRINKGTLSSRINKGTL 331
I + KGT + + + L
Sbjct: 469 NVDKRATITLDYALRADKVALNGWSESGKGTAGNLYKYNNPYTNTTDYFILKQSTYGYFP 528
Query: 332 SSTRINKGTLSSRINKGTLSSTRINKGTLSSRINKGTLSSTRINKGTLSSRINKGTLSST 391
+ N ++G ++ + + G L L + +
Sbjct: 529 TDQSSNATWEFVGHSQGDAQKLVADRFNTAGYLFHGQLKGNLNVDNRLPEGVTGALVMDG 588
Query: 392 RINKGTLSSRINKGTLSSTRINKGTLSSRINKGTLSSTR----INKGTLSSRINKGTLSS 447
+ ++ N +++ L+++ + + T S+ + S
Sbjct: 589 AADISGTFTQENGRLTLQGHPVIHAYNTQSVADKLAASGDHSVLTQPTSFSQEDWENRSF 648
Query: 448 TRINKGTLSSRINKGTLSSTRINKGTLSSRINKGTLSSTRINKGTLSSRINKGTLSSTRI 507
T ++ G ++ +S + G + +S
Sbjct: 649 TFDRLSLKNTDFGLGRNATLNTTIQADNSSVTLGDSRVFIDKNDGQGTAFTLEEGTSVAT 708
Query: 508 NKGTLSSRINKGTLSSTRINKGTLSSRINKGTLSSTRINKGTLSSRINKGTLSSTRINKG 567
S L + + +ST +N + S+ + TL+ST +N
Sbjct: 709 KDADKSVFNGTVNLDNQSVLNINDIFNGGIQANNST-VNISSDSAVLGNSTLTSTALNLN 767
Query: 568 TLSSRINKGTLSSTRINKGTLSSRINKGTLSSTRINKGTLSSRINKGTLSSTRINKGTLS 627
++ + + S + ++ + L
Sbjct: 768 KGANALASQSFVSDGPVNISDATLSLNSRPDEVSHTLLPVYDYAGSWNLKGDDARLNVGP 827
Query: 628 SRINKGTLSSTRINKGTLSSRINKGTLSSTRINKGTLSSRINKGTLSSTRINKGTLSSRI 687
+ G ++ TL + + + S + S
Sbjct: 828 YSMLSGNINVQDKGTVTLGGEGELSPDLTLQNQMLYSLFNGYRNIWSGSLNAPDATVSMT 887
Query: 688 NKGTLSSTRINKGTLSSRINKGTLSSTRINKGTLSSRINKGTLSSTRIN 736
+ + G + + TL++ S+ +
Sbjct: 888 DTQWSMNGNSTAGNMKLNRTIVGFNGGTSPFTTLTTDNLDAVQSAFVMR 936
Score = 32.3 bits (72), Expect = 0.95
Identities = 51/533 (9%), Positives = 128/533 (24%), Gaps = 7/533 (1%)
Query: 151 NATSDNEGTLSSTRINKGTLSSRINKGTLSSTRINKGTLSSRINKGTLSSTRINKGTLSS 210
+ + ++S R R S GTL +N +L+ ++ +
Sbjct: 407 QVQAFSSVNIASGRPTVVLTDERQVNPDTVSWGYRGGTLD--VNGNSLTFHQLKAADYGA 464
Query: 211 RINKGTLSSTRINKGTLSSRINKGTLSSTRINKGTLSSRINKGTLSSTRINKGTLSSRIN 270
+ I + KGT + + + L
Sbjct: 465 VLANNVDKRATITLDYALRADKVALNGWSESGKGTAGNLYKYNNPYTNTTDYFILKQSTY 524
Query: 271 KGTLSSTRINKGTLSSRINKGTLSSTRINKGTLSSRINKGTLSSTRINKGTLSSRINKGT 330
+ N ++G ++ + + G L L +
Sbjct: 525 GYFPTDQSSNATWEFVGHSQGDAQKLVADRFNTAGYLFHGQLKGNLNVDNRLPEGVTGAL 584
Query: 331 LSSTRINKGTLSSRINKGTLSSTRINKGTLSSRINKGTLSSTR----INKGTLSSRINKG 386
+ + ++ N +++ L+++ + + T S+ +
Sbjct: 585 VMDGAADISGTFTQENGRLTLQGHPVIHAYNTQSVADKLAASGDHSVLTQPTSFSQEDWE 644
Query: 387 TLSSTRINKGTLSSRINKGTLSSTRINKGTLSSRINKGTLSSTRINKGTLSSRINKGTLS 446
S T ++ G ++ +S + G + +
Sbjct: 645 NRSFTFDRLSLKNTDFGLGRNATLNTTIQADNSSVTLGDSRVFIDKNDGQGTAFTLEEGT 704
Query: 447 STRINKGTLSSRINKGTLSSTRINKGTLSSRINKGTLSSTRINKGTLSSRINKGTLSSTR 506
S S L + + +ST +N + S+ + TL+ST
Sbjct: 705 SVATKDADKSVFNGTVNLDNQSVLNINDIFNGGIQANNST-VNISSDSAVLGNSTLTSTA 763
Query: 507 INKGTLSSRINKGTLSSTRINKGTLSSRINKGTLSSTRINKGTLSSRINKGTLSSTRINK 566
+N ++ + + S + ++ + L
Sbjct: 764 LNLNKGANALASQSFVSDGPVNISDATLSLNSRPDEVSHTLLPVYDYAGSWNLKGDDARL 823
Query: 567 GTLSSRINKGTLSSTRINKGTLSSRINKGTLSSTRINKGTLSSRINKGTLSSTRINKGTL 626
+ G ++ TL + + + S +
Sbjct: 824 NVGPYSMLSGNINVQDKGTVTLGGEGELSPDLTLQNQMLYSLFNGYRNIWSGSLNAPDAT 883
Query: 627 SSRINKGTLSSTRINKGTLSSRINKGTLSSTRINKGTLSSRINKGTLSSTRIN 679
S + + G + + TL++ S+ +
Sbjct: 884 VSMTDTQWSMNGNSTAGNMKLNRTIVGFNGGTSPFTTLTTDNLDAVQSAFVMR 936
Score = 29.2 bits (64), Expect = 8.8
Identities = 44/460 (9%), Positives = 110/460 (23%), Gaps = 5/460 (1%)
Query: 110 LNYVFGGGRTPYPSDGRSPSPTSEVGYGSYRSTTPSIFTLDNATSDNEGTLSSTRINKGT 169
L+Y + S T+ Y T + S + N
Sbjct: 478 LDYALRADKVALNGWSESGKGTAGNLYKYNNPYTNTTDYFILKQSTYGYFPTDQSSNATW 537
Query: 170 LSSRINKGTLSSTRINKGTLSSRINKGTLSSTRINKGTLSSRINKGTLSSTRINKGTLSS 229
++G ++ + + G L L + + + +
Sbjct: 538 EFVGHSQGDAQKLVADRFNTAGYLFHGQLKGNLNVDNRLPEGVTGALVMDGAADISGTFT 597
Query: 230 RINKGTLSSTRINKGTLSSRINKGTLSSTR----INKGTLSSRINKGTLSSTRINKGTLS 285
+ N +++ L+++ + + T S+ + S T +
Sbjct: 598 QENGRLTLQGHPVIHAYNTQSVADKLAASGDHSVLTQPTSFSQEDWENRSFTFDRLSLKN 657
Query: 286 SRINKGTLSSTRINKGTLSSRINKGTLSSTRINKGTLSSRINKGTLSSTRINKGTLSSRI 345
+ G ++ +S + G + +S S
Sbjct: 658 TDFGLGRNATLNTTIQADNSSVTLGDSRVFIDKNDGQGTAFTLEEGTSVATKDADKSVFN 717
Query: 346 NKGTLSSTRINKGTLSSRINKGTLSSTRINKGTLSSRINKGTLSSTRINKGTLSSRINKG 405
L + + +ST +N + S+ + TL+ST +N ++ +
Sbjct: 718 GTVNLDNQSVLNINDIFNGGIQANNST-VNISSDSAVLGNSTLTSTALNLNKGANALASQ 776
Query: 406 TLSSTRINKGTLSSRINKGTLSSTRINKGTLSSRINKGTLSSTRINKGTLSSRINKGTLS 465
+ S + ++ + L + G ++
Sbjct: 777 SFVSDGPVNISDATLSLNSRPDEVSHTLLPVYDYAGSWNLKGDDARLNVGPYSMLSGNIN 836
Query: 466 STRINKGTLSSRINKGTLSSTRINKGTLSSRINKGTLSSTRINKGTLSSRINKGTLSSTR 525
TL + + + S + S + +
Sbjct: 837 VQDKGTVTLGGEGELSPDLTLQNQMLYSLFNGYRNIWSGSLNAPDATVSMTDTQWSMNGN 896
Query: 526 INKGTLSSRINKGTLSSTRINKGTLSSRINKGTLSSTRIN 565
G + + TL++ S+ +
Sbjct: 897 STAGNMKLNRTIVGFNGGTSPFTTLTTDNLDAVQSAFVMR 936
>3sze_A Serine protease ESPP; parallel beta-helix, hydrolase; 2.50A
{Escherichia coli O157}
Length = 968
Score = 35.4 bits (80), Expect = 0.12
Identities = 58/522 (11%), Positives = 147/522 (28%), Gaps = 13/522 (2%)
Query: 166 NKGTLSSRINKGTLSSTRINKGTLSSR------INKGTLSSTRINKGTLSSRINKGTLSS 219
+ +I GTL + L + + T ++ I G + R+N S
Sbjct: 350 DNKDNLHKIGDGTLDVRKTQNTNLKTGEGLVILGAEKTFNNIYITSGDGTVRLNAENALS 409
Query: 220 TRINKGTLSSRINKGTLSSTRINKGTLSSRINKGTLSSTRINKGTLSSRINKGTLSSTRI 279
+ N GTL +N S T S I + I ++ I
Sbjct: 410 G-GEYNGIFFAKNGGTLD---LNGYNQSFNKIAATDSGAVITNTSTKKSILSLNNTADYI 465
Query: 280 NKGTLSSRINKGTLSSTRINKGTLSSRINKGTLSSTRINKGTLSSRINKGTLSSTRINKG 339
G ++ ++ T+ L T + + LS + + + R
Sbjct: 466 YHGNINGNLDVLQHHETKKENRRLILDGGVDTTNDISLRNTQLSMQGHATEHAIYRDGAF 525
Query: 340 TLSSRINKGTLSSTRINKGTLSSRINKGTLSSTRINKGTLSSRINKGTLSSTRINKGTLS 399
+ S L + G ++ + + S +++ + GTL
Sbjct: 526 SCSLPAPMRFLCGSDYVAGMQNTEADAVKQNGNAYKTNNAVSDLSQPDWETGTFRFGTLH 585
Query: 400 SRINKGTLSSTRINKGTLSSRINKGTLSSTR--INKGTLSSRINKGTLSSTRINKGTLSS 457
+ ++ G + + + T+ T I+ + G I +G
Sbjct: 586 LENSDFSVGRNANVIGDIQASKSNITIGDTTAYIDLHAGKNITGDGFGFRQNIVRGNSQG 645
Query: 458 RINKGTLSSTRINKGTLSSRINKGTLSSTRINKGTLSSRINKGTLSSTRINKGTLSSRIN 517
+ + + + + + + + + + + S
Sbjct: 646 ETLFTGGITAEDSTIVIKDKAKALFSNYVYLLNTKATIENGADVTTQSGMFSTSDISISG 705
Query: 518 KGTLSSTRINKGTLSSRINKGTLSSTRINKGTLSSRINKGTLSSTRINKGTLSSRINKGT 577
+++ I S + NK ++ + + S
Sbjct: 706 NLSMTGNPDKDNKFEPSIYLNDASYLLTDDSARLVAKNKASVVGDIHSTKSASIMFGHDE 765
Query: 578 LSSTRINKGTLSSRINKGTLSSTRINKGTLSSRINKGTLSSTRINKGTLSSRINKGTLSS 637
++++ T +G++++ T+++T + T S + ++
Sbjct: 766 SDLSQLSDRTSKGLALGLLGGFDVSYRGSVNAPSASATMNNT-WWQLTGDSALKTLKSTN 824
Query: 638 TRINKGTLSSRINKGTLSSTRINKGTLSSRINKGTLSSTRIN 679
+ + ++ TL+ + + + S ++
Sbjct: 825 SMVYFTDSANNKKFHTLTVDELATSNSAYAMRTNLSESDKLE 866
>3syj_A Adhesion and penetration protein autotransporter; bacterial
aggregation and biofilm formation, SELF-associatin
autotransporter (SAAT); 2.20A {Haemophilus influenzae}
Length = 1011
Score = 29.7 bits (65), Expect = 6.2
Identities = 50/471 (10%), Positives = 121/471 (25%), Gaps = 10/471 (2%)
Query: 168 GTLSSRINKGTLSSTRINKGTLSSRINKGTLSSTRINKGTLSSRINKGTLSSTRINKGTL 227
+ N + S+I KGTL + S + G + I +
Sbjct: 382 AGIHVSENSTVTWKVNGVEHDRLSKIGKGTLHVQAKGENKGSISVGDGKV----ILEQQA 437
Query: 228 SSRINKGTLSSTRINKGTLSSRIN---KGTLSSTRINKGTLSSRINKGTLSSTRINKGTL 284
+ NK S + G + ++N + +N +L+ RI
Sbjct: 438 DDQGNKQAFSEIGLVSGRGTVQLNDDKQFDTDKFYFGFRGGRLDLNGHSLTFKRIQNTDE 497
Query: 285 SSRI-NKGTLSSTRINKGTLSSRINKGTLSSTRINKGTLSSRINKGTLSSTRINKGTLSS 343
+ I N T + + S + + +++ + + + G L+
Sbjct: 498 GAMIVNHNTTQAANVTITGNESIVLPNGNNINKLDYRKEIAYNGWFGETDKNKHNGRLNL 557
Query: 344 RINKGTLSSTRINKGTLSSRINKGTLSSTRINKGTLSSRINKGTLSSTRINKGTLSSRIN 403
T T + G + + + G + +G I
Sbjct: 558 IYKPTTEDRTLLLSGGTNLKGDITQTKGKLFFSGRPTPHAYNHLNKRWSEMEGIPQGEIV 617
Query: 404 KGTLSSTRINKGTLSSRINKGTLSSTRINKGTLSSRINKGTLSSTRINKGTLSSRINKGT 463
R + KG + N ++ ++
Sbjct: 618 WDHDWINRT--FKAENFQIKGGSAVVSRNVSSIEGNWTVSNNANATFGVVPNQQNTICTR 675
Query: 464 LSSTRINKGTLSSRINKGTLSSTRINKGTLSSRINKGTLSSTRINKGTLSSRINKGTLSS 523
T + + ++S + S + ++ + +
Sbjct: 676 SDWTGLTTCQKVDLTDTKVINSIPKTQINGSINLTDNATANVKGLAKLNGNVTLTNHSQF 735
Query: 524 TRINKGTLSSRINKGTLSSTRINKGTLSSRINKGTLSSTRINKGTLSSRINKGTLSSTRI 583
T N T I S+ ++ L+ ++ + + S +I ++ +
Sbjct: 736 TLSNNATQIGNIRLSDNSTATVDNANLNGNVHLTDSAQFSLKNSHFSHQIQGDKGTTVTL 795
Query: 584 NKGTLSSRINKGTLSSTRINKGTLSSRINKGTLSSTRINKGTLSSRINKGT 634
T + + + T N + + ++T + +
Sbjct: 796 ENATWTMPSDTTLQNLTLNNSTITLNSAYSASSNNTPRRRSLETETTPTSA 846
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.310 0.125 0.331
Gapped
Lambda K H
0.267 0.0420 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 12,575,820
Number of extensions: 699717
Number of successful extensions: 880
Number of sequences better than 10.0: 1
Number of HSP's gapped: 751
Number of HSP's successfully gapped: 21
Length of query: 1023
Length of database: 6,701,793
Length adjustment: 103
Effective length of query: 920
Effective length of database: 3,825,930
Effective search space: 3519855600
Effective search space used: 3519855600
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 62 (28.5 bits)