RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy4365
         (1023 letters)



>d1aora1 a.110.1.1 (A:211-605) Aldehyde ferredoxin oxidoreductase
           {Archaeon Pyrococcus furiosus [TaxId: 2261]}
          Length = 395

 Score = 32.2 bits (73), Expect = 0.36
 Identities = 14/77 (18%), Positives = 24/77 (31%), Gaps = 13/77 (16%)

Query: 43  PFTSPHYPVLERPRLAKSAE----WADSVVLCCLVEFEIP------LLRSYF-REVDIGE 91
               PH    ++ ++    +      DS  LC    F +       LL +    +    +
Sbjct: 253 YKMDPHDVSDDKIKMLILFQDLTALIDSAGLCLFTTFGLGADDYRDLLNAALGWDFTTED 312

Query: 92  YLNKGH--WRLSEALNI 106
           YL  G   W      N+
Sbjct: 313 YLKIGERIWNAERLFNL 329


>d1q2la4 d.185.1.1 (A:24-263) Protease III {Escherichia coli [TaxId:
           562]}
          Length = 240

 Score = 31.6 bits (70), Expect = 0.41
 Identities = 6/25 (24%), Positives = 11/25 (44%)

Query: 924 QQVFKKPANKRREPRRHTLQNGIDY 948
           Q+  +K     R+ +   L NG+  
Sbjct: 8   QETIRKSDKDNRQYQAIRLDNGMVV 32


>d1l1la_ c.7.1.4 (A:) B12-dependent (class II) ribonucleotide
           reductase {Lactobacillus leichmannii [TaxId: 28039]}
          Length = 721

 Score = 31.4 bits (70), Expect = 0.67
 Identities = 15/82 (18%), Positives = 26/82 (31%), Gaps = 5/82 (6%)

Query: 920 QQQAQQVFKKPANKRREPRRHTLQNG----IDYNMVRLDFRFNFVPCSRVMFSDVFVVTE 975
            ++A++++K        P    L              L     FV      + D  +V  
Sbjct: 76  TEEAERLYKLIYGLGATPSGRNLWISGTDYQRRTGDSL-NNCWFVAIRPQKYGDSKIVPS 134

Query: 976 KDLVTEKDLGHVLSNLMEGLMQ 997
                EK +    S L + LM+
Sbjct: 135 YLGKQEKAVSMPFSFLFDELMK 156


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.310    0.125    0.331 

Gapped
Lambda     K      H
   0.267   0.0390    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,989,718
Number of extensions: 126473
Number of successful extensions: 131
Number of sequences better than 10.0: 1
Number of HSP's gapped: 125
Number of HSP's successfully gapped: 3
Length of query: 1023
Length of database: 2,407,596
Length adjustment: 94
Effective length of query: 929
Effective length of database: 1,116,976
Effective search space: 1037670704
Effective search space used: 1037670704
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 58 (27.0 bits)