BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy4369
         (71 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1DMX|A Chain A, Murine Mitochondrial Carbonic Anyhdrase V At 2.45
           Angstroms Resolution
 pdb|1DMX|B Chain B, Murine Mitochondrial Carbonic Anyhdrase V At 2.45
           Angstroms Resolution
 pdb|1DMY|A Chain A, Complex Between Murine Mitochondrial Carbonic Anyhdrase V
           And The Transition State Analogue Acetazolamide
 pdb|1DMY|B Chain B, Complex Between Murine Mitochondrial Carbonic Anyhdrase V
           And The Transition State Analogue Acetazolamide
          Length = 248

 Score = 26.9 bits (58), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 13/25 (52%), Positives = 17/25 (68%), Gaps = 1/25 (4%)

Query: 32  RALQRLVDSTPEINNHSDTQERVTP 56
           +ALQ+LVD  PE+  H DTQ  + P
Sbjct: 134 QALQKLVDVLPEV-RHKDTQVAMGP 157


>pdb|1KEQ|A Chain A, Crystal Structure Of F65aY131C CARBONIC ANHYDRASE V,
           Covalently Modified With 4-Chloromethylimidazole
 pdb|1KEQ|B Chain B, Crystal Structure Of F65aY131C CARBONIC ANHYDRASE V,
           Covalently Modified With 4-Chloromethylimidazole
          Length = 248

 Score = 26.9 bits (58), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 13/25 (52%), Positives = 17/25 (68%), Gaps = 1/25 (4%)

Query: 32  RALQRLVDSTPEINNHSDTQERVTP 56
           +ALQ+LVD  PE+  H DTQ  + P
Sbjct: 134 QALQKLVDVLPEV-RHKDTQVAMGP 157


>pdb|4FC9|B Chain B, Structure Of The C-Terminal Domain Of The Type Iii
           Effector Xcv3220 (Xopl)
 pdb|4FC9|A Chain A, Structure Of The C-Terminal Domain Of The Type Iii
           Effector Xcv3220 (Xopl)
 pdb|4FC9|C Chain C, Structure Of The C-Terminal Domain Of The Type Iii
           Effector Xcv3220 (Xopl)
          Length = 208

 Score = 25.4 bits (54), Expect = 8.8,   Method: Compositional matrix adjust.
 Identities = 12/52 (23%), Positives = 30/52 (57%)

Query: 6   LATTCPFLLNFEIRQLLLYASSFDRDRALQRLVDSTPEINNHSDTQERVTPR 57
           +AT    +  ++ R+L+++A   DR R  +  V    ++++ SD++++ +P 
Sbjct: 152 VATLAKAVQXWKTRELIVHAHPQDRARFPELAVHIPEQVSDDSDSEQQTSPE 203


>pdb|1URT|A Chain A, Murine Carbonic Anhydrase V
          Length = 248

 Score = 25.4 bits (54), Expect = 9.5,   Method: Compositional matrix adjust.
 Identities = 12/20 (60%), Positives = 15/20 (75%), Gaps = 1/20 (5%)

Query: 32  RALQRLVDSTPEINNHSDTQ 51
           +ALQ+LVD  PE+  H DTQ
Sbjct: 134 QALQKLVDVLPEV-RHKDTQ 152


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.322    0.133    0.383 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,806,523
Number of Sequences: 62578
Number of extensions: 49066
Number of successful extensions: 86
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 84
Number of HSP's gapped (non-prelim): 5
length of query: 71
length of database: 14,973,337
effective HSP length: 41
effective length of query: 30
effective length of database: 12,407,639
effective search space: 372229170
effective search space used: 372229170
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 45 (21.9 bits)