BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy4369
(71 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q14669|TRIPC_HUMAN E3 ubiquitin-protein ligase TRIP12 OS=Homo sapiens GN=TRIP12 PE=1
SV=1
Length = 1992
Score = 85.1 bits (209), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 36/64 (56%), Positives = 46/64 (71%)
Query: 5 HLATTCPFLLNFEIRQLLLYASSFDRDRALQRLVDSTPEINNHSDTQERVTPRLDRRKRT 64
L TCPF F+ RQ+L Y ++FDRDRA+QRL+D+ PEIN RV PRLDR+KRT
Sbjct: 1533 ELGKTCPFFFPFDTRQMLFYVTAFDRDRAMQRLLDTNPEINQSDSQDSRVAPRLDRKKRT 1592
Query: 65 VSRQ 68
V+R+
Sbjct: 1593 VNRE 1596
>sp|E1B7Q7|TRIPC_BOVIN E3 ubiquitin-protein ligase TRIP12 OS=Bos taurus GN=TRIP12 PE=2 SV=2
Length = 1992
Score = 85.1 bits (209), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 36/64 (56%), Positives = 46/64 (71%)
Query: 5 HLATTCPFLLNFEIRQLLLYASSFDRDRALQRLVDSTPEINNHSDTQERVTPRLDRRKRT 64
L TCPF F+ RQ+L Y ++FDRDRA+QRL+D+ PEIN RV PRLDR+KRT
Sbjct: 1533 ELGKTCPFFFPFDTRQMLFYVTAFDRDRAMQRLLDTNPEINQSDSQDSRVAPRLDRKKRT 1592
Query: 65 VSRQ 68
V+R+
Sbjct: 1593 VNRE 1596
>sp|F1LP64|TRIPC_RAT E3 ubiquitin-protein ligase TRIP12 OS=Rattus norvegicus GN=Trip12
PE=2 SV=1
Length = 2025
Score = 85.1 bits (209), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 36/64 (56%), Positives = 46/64 (71%)
Query: 5 HLATTCPFLLNFEIRQLLLYASSFDRDRALQRLVDSTPEINNHSDTQERVTPRLDRRKRT 64
L TCPF F+ RQ+L Y ++FDRDRA+QRL+D+ PEIN RV PRLDR+KRT
Sbjct: 1566 ELGKTCPFFFPFDTRQMLFYVTAFDRDRAMQRLLDTNPEINQSDSQDSRVAPRLDRKKRT 1625
Query: 65 VSRQ 68
V+R+
Sbjct: 1626 VNRE 1629
>sp|G5E870|TRIPC_MOUSE E3 ubiquitin-protein ligase TRIP12 OS=Mus musculus GN=Trip12 PE=1
SV=1
Length = 2025
Score = 85.1 bits (209), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 36/64 (56%), Positives = 46/64 (71%)
Query: 5 HLATTCPFLLNFEIRQLLLYASSFDRDRALQRLVDSTPEINNHSDTQERVTPRLDRRKRT 64
L TCPF F+ RQ+L Y ++FDRDRA+QRL+D+ PEIN RV PRLDR+KRT
Sbjct: 1566 ELGKTCPFFFPFDTRQMLFYVTAFDRDRAMQRLLDTNPEINQSDSQDSRVAPRLDRKKRT 1625
Query: 65 VSRQ 68
V+R+
Sbjct: 1626 VNRE 1629
>sp|F1RCR6|TRIPC_DANRE E3 ubiquitin-protein ligase TRIP12 OS=Danio rerio GN=trip12 PE=2 SV=1
Length = 2026
Score = 84.0 bits (206), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 35/63 (55%), Positives = 45/63 (71%)
Query: 5 HLATTCPFLLNFEIRQLLLYASSFDRDRALQRLVDSTPEINNHSDTQERVTPRLDRRKRT 64
L TCPF F+ RQ+L Y ++FDRDRA+QRL+D+ PEIN RV PRLDR+KRT
Sbjct: 1567 ELGKTCPFFFPFDTRQMLFYVTAFDRDRAMQRLLDTNPEINQSDSQDSRVAPRLDRKKRT 1626
Query: 65 VSR 67
++R
Sbjct: 1627 INR 1629
>sp|B4F6W9|TRIPC_XENTR E3 ubiquitin-protein ligase TRIP12 OS=Xenopus tropicalis GN=trip12
PE=2 SV=1
Length = 2056
Score = 83.6 bits (205), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 35/63 (55%), Positives = 46/63 (73%)
Query: 6 LATTCPFLLNFEIRQLLLYASSFDRDRALQRLVDSTPEINNHSDTQERVTPRLDRRKRTV 65
L +CPF F+ RQ+L Y ++FDRDRA+QRL+D+ PEIN RV PRLDR+KRTV
Sbjct: 1598 LGKSCPFFFPFDTRQMLFYVTAFDRDRAMQRLLDTNPEINQSDSQDSRVAPRLDRKKRTV 1657
Query: 66 SRQ 68
+R+
Sbjct: 1658 NRE 1660
>sp|Q10435|YDE1_SCHPO Probable ubiquitin fusion degradation protein C12B10.01c
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=SPAC12B10.01c PE=3 SV=2
Length = 1647
Score = 36.2 bits (82), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 35/63 (55%)
Query: 6 LATTCPFLLNFEIRQLLLYASSFDRDRALQRLVDSTPEINNHSDTQERVTPRLDRRKRTV 65
L + PFL+ FE R LLL +++F R++ L+ PE++ + + L R+K +
Sbjct: 1221 LTSAYPFLVPFETRYLLLQSTAFGLSRSVSFLLSRNPELSKNESSSILQFVSLHRQKIRI 1280
Query: 66 SRQ 68
SR+
Sbjct: 1281 SRK 1283
>sp|Q6WWW4|UPL3_ARATH E3 ubiquitin-protein ligase UPL3 OS=Arabidopsis thaliana GN=UPL3 PE=1
SV=1
Length = 1888
Score = 36.2 bits (82), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 33/64 (51%), Gaps = 1/64 (1%)
Query: 5 HLATTCPFLLNFEIRQLLLYASSFDRDRALQRL-VDSTPEINNHSDTQERVTPRLDRRKR 63
L CPFL F+ R+ Y+++F RAL RL + + ++ +E RL R+K
Sbjct: 1414 QLTRACPFLFPFQTRRQYFYSTAFGLSRALNRLQQQQGADGSGSTNEREMRIGRLQRQKV 1473
Query: 64 TVSR 67
VSR
Sbjct: 1474 RVSR 1477
>sp|Q69ZR2|HECD1_MOUSE E3 ubiquitin-protein ligase HECTD1 OS=Mus musculus GN=Hectd1 PE=1
SV=2
Length = 2618
Score = 36.2 bits (82), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 20/34 (58%)
Query: 4 EHLATTCPFLLNFEIRQLLLYASSFDRDRALQRL 37
E L + CPFL+ FE RQL ++F RA+ L
Sbjct: 2070 EQLTSKCPFLIPFETRQLYFTCTAFGASRAIVWL 2103
>sp|Q9ULT8|HECD1_HUMAN E3 ubiquitin-protein ligase HECTD1 OS=Homo sapiens GN=HECTD1 PE=1
SV=3
Length = 2610
Score = 36.2 bits (82), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 20/34 (58%)
Query: 4 EHLATTCPFLLNFEIRQLLLYASSFDRDRALQRL 37
E L + CPFL+ FE RQL ++F RA+ L
Sbjct: 2065 EQLTSKCPFLIPFETRQLYFTCTAFGASRAIVWL 2098
>sp|B5FBJ6|LIPA_VIBFM Lipoyl synthase OS=Vibrio fischeri (strain MJ11) GN=lipA PE=3 SV=1
Length = 321
Score = 28.9 bits (63), Expect = 9.2, Method: Composition-based stats.
Identities = 20/51 (39%), Positives = 28/51 (54%), Gaps = 4/51 (7%)
Query: 14 LNFEIRQLLLYASSFDR-DRALQRLVDSTPEINNHSDTQERVTPRLDRRKR 63
LN EIR L R DRAL+ ++D+ P++ NH+ PRL R+ R
Sbjct: 159 LNPEIRIETLVPDFRGRMDRALEAMIDNPPDVFNHN---LETAPRLYRKVR 206
>sp|Q5E6V9|LIPA_VIBF1 Lipoyl synthase OS=Vibrio fischeri (strain ATCC 700601 / ES114)
GN=lipA PE=3 SV=1
Length = 321
Score = 28.9 bits (63), Expect = 9.2, Method: Composition-based stats.
Identities = 20/51 (39%), Positives = 28/51 (54%), Gaps = 4/51 (7%)
Query: 14 LNFEIRQLLLYASSFDR-DRALQRLVDSTPEINNHSDTQERVTPRLDRRKR 63
LN EIR L R DRAL+ ++D+ P++ NH+ PRL R+ R
Sbjct: 159 LNPEIRIETLVPDFRGRMDRALEAMIDNPPDVFNHN---LETAPRLYRKVR 206
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.322 0.133 0.383
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 23,648,875
Number of Sequences: 539616
Number of extensions: 692875
Number of successful extensions: 1653
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 1642
Number of HSP's gapped (non-prelim): 14
length of query: 71
length of database: 191,569,459
effective HSP length: 43
effective length of query: 28
effective length of database: 168,365,971
effective search space: 4714247188
effective search space used: 4714247188
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)