Query psy4369
Match_columns 71
No_of_seqs 101 out of 152
Neff 4.8
Searched_HMMs 29240
Date Fri Aug 16 23:45:17 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4369.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/4369hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2oni_A E3 ubiquitin-protein li 35.6 12 0.00042 27.5 1.1 23 4-26 10-32 (392)
2 3pev_B Nucleoporin GLE1; RECA, 27.2 12 0.00042 26.9 -0.2 14 4-17 132-145 (297)
3 1h7d_A Aminolevulinic acid syn 26.5 14 0.00049 20.3 0.1 9 6-14 7-15 (49)
4 1wiv_A UBP14, ubiquitin-specif 15.8 1.7E+02 0.0058 16.4 3.9 29 14-42 41-69 (73)
5 1wz3_A Autophagy 12B, ATG12B, 11.8 1.3E+02 0.0044 18.0 2.0 15 55-69 24-38 (96)
6 3bpq_A Antitoxin RELB3, RELB; 11.6 2.3E+02 0.0078 15.6 2.9 28 9-36 7-34 (52)
7 4a6q_A Histone deacetylase com 11.0 73 0.0025 20.9 0.7 9 7-15 23-31 (143)
8 1z96_A DNA-damage, UBA-domain 10.9 1.7E+02 0.0058 13.8 3.0 23 15-37 17-39 (40)
9 4gdk_A Ubiquitin-like protein 10.7 1.5E+02 0.0053 17.4 2.0 16 54-69 15-30 (91)
10 1ify_A HHR23A, UV excision rep 10.0 2.2E+02 0.0077 14.5 3.0 25 15-39 21-45 (49)
No 1
>2oni_A E3 ubiquitin-protein ligase NEDD4-like protein; alpha and beta protein (A + B), E3 ligase, HECT domain, UBL- conjugation pathway; HET: MSE; 2.20A {Homo sapiens} PDB: 3jvz_C 3jw0_C 2xbf_A 2xbb_A
Probab=35.55 E-value=12 Score=27.50 Aligned_cols=23 Identities=4% Similarity=-0.184 Sum_probs=17.5
Q ss_pred HHhhhhCCceeeHHHHHHHHHHh
Q psy4369 4 EHLATTCPFLLNFEIRQLLLYAS 26 (71)
Q Consensus 4 ~~L~~~cpFLFPFetR~~~f~~T 26 (71)
..+...+||..||+.|..||+..
T Consensus 10 ~~~~~~~p~~~~f~~k~~~f~~~ 32 (392)
T 2oni_A 10 GRENLYFQGSREFKQKYDYFRKK 32 (392)
T ss_dssp ----CCSTTHHHHHHHHHHHHHH
T ss_pred hhcccCCCccccHHHHHHHHHHH
Confidence 34667899999999999999865
No 2
>3pev_B Nucleoporin GLE1; RECA, heat, DEAD-BOX, ATPase, helicase, mRNA export, nuclear hydrolase; HET: IHP; 2.50A {Saccharomyces cerevisiae} PDB: 3peu_B* 3pex_B* 3pez_B* 3rrm_B* 3rrn_B*
Probab=27.19 E-value=12 Score=26.87 Aligned_cols=14 Identities=36% Similarity=1.020 Sum_probs=11.4
Q ss_pred HHhhhhCCceeeHH
Q psy4369 4 EHLATTCPFLLNFE 17 (71)
Q Consensus 4 ~~L~~~cpFLFPFe 17 (71)
..|.+.|||++||-
T Consensus 132 A~l~k~CP~~vp~~ 145 (297)
T 3pev_B 132 ARLVKKCPFVIGFT 145 (297)
T ss_dssp HHHHHHCGGGGTCC
T ss_pred HHHhhcCCcccccC
Confidence 35678999999985
No 3
>1h7d_A Aminolevulinic acid synthase 2, erythroid; acyltransferase, ALAS, presequence, structure; NMR {Mus musculus} SCOP: j.88.1.1 PDB: 1h7j_A
Probab=26.50 E-value=14 Score=20.35 Aligned_cols=9 Identities=44% Similarity=0.933 Sum_probs=6.0
Q ss_pred hhhhCCcee
Q psy4369 6 LATTCPFLL 14 (71)
Q Consensus 6 L~~~cpFLF 14 (71)
+.+.||||=
T Consensus 7 ~l~~CPFL~ 15 (49)
T 1h7d_A 7 LLRSCPVLS 15 (49)
T ss_dssp SCCSCCCCS
T ss_pred hhccCCchh
Confidence 456788873
No 4
>1wiv_A UBP14, ubiquitin-specific protease 14; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=15.83 E-value=1.7e+02 Score=16.44 Aligned_cols=29 Identities=17% Similarity=0.185 Sum_probs=18.3
Q ss_pred eeHHHHHHHHHHhhcchhHHHHHHHhhCC
Q psy4369 14 LNFEIRQLLLYASSFDRDRALQRLVDSTP 42 (71)
Q Consensus 14 FPFetR~~~f~~TsFG~~R~i~~~q~~~~ 42 (71)
||-+.=..-+..|.-+..||+.++.+..+
T Consensus 41 F~~~~a~~AL~~t~~nve~Ave~L~~~~~ 69 (73)
T 1wiv_A 41 FAEDVARKALKASGGDIEKATDWVFNNSG 69 (73)
T ss_dssp CCHHHHHHHHHHTTSCHHHHHHHHHHSCC
T ss_pred CCHHHHHHHHHHhCCCHHHHHHHHHhCCC
Confidence 45444455566666677888888766543
No 5
>1wz3_A Autophagy 12B, ATG12B, APG12B; ubiquitin-fold, plant protein; 1.80A {Arabidopsis thaliana} SCOP: d.15.1.7
Probab=11.82 E-value=1.3e+02 Score=18.00 Aligned_cols=15 Identities=33% Similarity=0.370 Sum_probs=13.2
Q ss_pred CCCcCceeEEeeCCC
Q psy4369 55 TPRLDRRKRTVSRQG 69 (71)
Q Consensus 55 ~gRl~R~KvrVsR~~ 69 (71)
++-|+++|+.|+.+.
T Consensus 24 ~P~l~k~KflV~~~~ 38 (96)
T 1wz3_A 24 APILKQSKFKVSGSD 38 (96)
T ss_dssp CCCCSCCEEEEETTS
T ss_pred CCcccccEEEeCCCC
Confidence 688999999999875
No 6
>3bpq_A Antitoxin RELB3, RELB; protein toxin-antitoxin complex; 2.20A {Methanocaldococcus jannaschii}
Probab=11.57 E-value=2.3e+02 Score=15.62 Aligned_cols=28 Identities=7% Similarity=0.046 Sum_probs=24.2
Q ss_pred hCCceeeHHHHHHHHHHhhcchhHHHHH
Q psy4369 9 TCPFLLNFEIRQLLLYASSFDRDRALQR 36 (71)
Q Consensus 9 ~cpFLFPFetR~~~f~~TsFG~~R~i~~ 36 (71)
-+-++.||++=+++...--+|..+||.-
T Consensus 7 i~kvii~~~~fekieEiED~GL~kaM~E 34 (52)
T 3bpq_A 7 FKKFFISRKEYEKIEEILDIGLAKAMEE 34 (52)
T ss_dssp -CCCEECHHHHHHHHHHHHHHHHHHHHT
T ss_pred hHhheecHHHHHHHHHHHHHHHHHHHHH
Confidence 4678999999999999999999998873
No 7
>4a6q_A Histone deacetylase complex subunit SAP18; transcription, splicing, RNA metabolism, ubiquitin-like; HET: MSE; 1.50A {Mus musculus} PDB: 4a90_A* 2hde_A 4a8x_C
Probab=10.98 E-value=73 Score=20.89 Aligned_cols=9 Identities=56% Similarity=1.184 Sum_probs=6.2
Q ss_pred hhhCCceee
Q psy4369 7 ATTCPFLLN 15 (71)
Q Consensus 7 ~~~cpFLFP 15 (71)
-+.||||.-
T Consensus 23 ektcPfLLR 31 (143)
T 4a6q_A 23 EKTCPLLLR 31 (143)
T ss_dssp GGSCCEEEE
T ss_pred cCCCCeEEE
Confidence 367888874
No 8
>1z96_A DNA-damage, UBA-domain protein MUD1; ubiquitin, three-helix bundle, protein transport; 1.80A {Schizosaccharomyces pombe} SCOP: a.5.2.1
Probab=10.91 E-value=1.7e+02 Score=13.76 Aligned_cols=23 Identities=26% Similarity=-0.039 Sum_probs=10.9
Q ss_pred eHHHHHHHHHHhhcchhHHHHHH
Q psy4369 15 NFEIRQLLLYASSFDRDRALQRL 37 (71)
Q Consensus 15 PFetR~~~f~~TsFG~~R~i~~~ 37 (71)
|-+.-...+..|.-+..+|+.++
T Consensus 17 ~~~~a~~AL~~~~~n~e~A~~~L 39 (40)
T 1z96_A 17 DPLEAAQALDAANGDLDVAASFL 39 (40)
T ss_dssp CHHHHHHHHHHTTTCHHHHHHHH
T ss_pred CHHHHHHHHHHcCCCHHHHHHHH
Confidence 43444444455544455555543
No 9
>4gdk_A Ubiquitin-like protein ATG12; protein-protein conjugate, protein-protein complex, ubiquiti protein, E3 ligase, ubiquitin-like fold; 2.70A {Homo sapiens} PDB: 4gdl_A
Probab=10.71 E-value=1.5e+02 Score=17.43 Aligned_cols=16 Identities=31% Similarity=0.420 Sum_probs=13.6
Q ss_pred cCCCcCceeEEeeCCC
Q psy4369 54 VTPRLDRRKRTVSRQG 69 (71)
Q Consensus 54 ~~gRl~R~KvrVsR~~ 69 (71)
.+|-|+++|+.|+.+.
T Consensus 15 ~~P~l~k~KflVp~~~ 30 (91)
T 4gdk_A 15 DTPIMKTKKWAVERTR 30 (91)
T ss_dssp SSCCCSCCEEEEETTC
T ss_pred CCCcccccEEEcCCCC
Confidence 4788999999999875
No 10
>1ify_A HHR23A, UV excision repair protein RAD23 homolog A; ubiquitin associated domain, UBA domain, ubiquitin proteosome pathway, DNA binding protein; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=9.99 E-value=2.2e+02 Score=14.54 Aligned_cols=25 Identities=28% Similarity=0.150 Sum_probs=12.9
Q ss_pred eHHHHHHHHHHhhcchhHHHHHHHh
Q psy4369 15 NFEIRQLLLYASSFDRDRALQRLVD 39 (71)
Q Consensus 15 PFetR~~~f~~TsFG~~R~i~~~q~ 39 (71)
|-+.=..-+..|.....||+.+|.+
T Consensus 21 ~~~~a~~AL~~~~~n~e~A~e~L~~ 45 (49)
T 1ify_A 21 ERERVVAALRASYNNPHRAVEYLLT 45 (49)
T ss_dssp CHHHHHHHHHTTTSCSHHHHHHHHH
T ss_pred CHHHHHHHHHHhCCCHHHHHHHHHh
Confidence 4444444445555556666666544
Done!