Query psy4369
Match_columns 71
No_of_seqs 101 out of 152
Neff 4.8
Searched_HMMs 13730
Date Fri Aug 16 23:45:22 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4369.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/4369hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1k78a2 a.4.1.5 (A:82-142) Pax 28.3 19 0.0014 19.3 2.2 21 4-24 19-39 (61)
2 d6paxa2 a.4.1.5 (A:69-133) Pax 28.0 19 0.0014 19.5 2.2 21 4-24 17-37 (65)
3 d1bgfa_ a.90.1.1 (A:) Transcri 21.2 16 0.0011 21.8 1.0 18 5-22 18-35 (124)
4 d2zjda1 d.15.1.3 (A:2-120) Mic 7.6 1.1E+02 0.0079 17.4 2.0 15 55-69 43-57 (119)
5 d2pp4a1 a.277.1.1 (A:119-225) 7.5 35 0.0025 20.0 -0.4 28 10-37 60-93 (107)
6 d1a5ca_ c.1.10.1 (A:) Fructose 7.0 52 0.0038 22.6 0.3 11 26-36 291-301 (342)
7 d2drpa2 g.37.1.1 (A:140-165) T 6.8 55 0.004 14.4 0.2 7 9-15 3-9 (26)
8 d3d32a1 d.15.1.3 (A:1-118) GAB 6.5 1.3E+02 0.0095 17.1 2.0 15 55-69 43-57 (118)
9 d1eaka4 g.14.1.2 (A:278-335) G 6.3 38 0.0027 17.5 -0.6 7 11-17 13-19 (58)
10 d1eaka5 g.14.1.2 (A:336-393) G 5.9 40 0.0029 17.4 -0.6 7 11-17 13-19 (58)
No 1
>d1k78a2 a.4.1.5 (A:82-142) Pax-5 {Human (Homo sapiens) [TaxId: 9606]}
Probab=28.29 E-value=19 Score=19.32 Aligned_cols=21 Identities=29% Similarity=0.450 Sum_probs=18.2
Q ss_pred HHhhhhCCceeeHHHHHHHHH
Q psy4369 4 EHLATTCPFLLNFEIRQLLLY 24 (71)
Q Consensus 4 ~~L~~~cpFLFPFetR~~~f~ 24 (71)
.++-+.+|=+|.-|.|..++.
T Consensus 19 ~~yK~enP~iFaWEIRd~Li~ 39 (61)
T d1k78a2 19 AEYKRQNPTMFAWEIRDRLLA 39 (61)
T ss_dssp HHHHHHCTTCCHHHHHHHHHH
T ss_pred HHHHhcCCcccHHHHHHHHHH
Confidence 567889999999999998865
No 2
>d6paxa2 a.4.1.5 (A:69-133) Pax-6 {Human (Homo sapiens) [TaxId: 9606]}
Probab=27.97 E-value=19 Score=19.54 Aligned_cols=21 Identities=33% Similarity=0.670 Sum_probs=18.4
Q ss_pred HHhhhhCCceeeHHHHHHHHH
Q psy4369 4 EHLATTCPFLLNFEIRQLLLY 24 (71)
Q Consensus 4 ~~L~~~cpFLFPFetR~~~f~ 24 (71)
.++-+.+|=+|.-|.|..++.
T Consensus 17 ~~yK~enP~iFaWEIRd~Li~ 37 (65)
T d6paxa2 17 AQYKQECPSIFAWEIRDRLLS 37 (65)
T ss_dssp HHHHHHCTTCCHHHHHHHHHH
T ss_pred HHHHHhCCccchHHHHHHHHH
Confidence 567889999999999998875
No 3
>d1bgfa_ a.90.1.1 (A:) Transcription factor STAT-4 N-domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=21.15 E-value=16 Score=21.82 Aligned_cols=18 Identities=28% Similarity=0.298 Sum_probs=12.5
Q ss_pred HhhhhCCceeeHHHHHHH
Q psy4369 5 HLATTCPFLLNFEIRQLL 22 (71)
Q Consensus 5 ~L~~~cpFLFPFetR~~~ 22 (71)
++-.-|.==||.|.|+.+
T Consensus 18 qv~~lY~~~FPiEVRhyL 35 (124)
T d1bgfa_ 18 QVDQFYDDNFPMEIRHLL 35 (124)
T ss_dssp HHGGGCBTTBCHHHHHHT
T ss_pred HHHHHccccCCHHHHHHH
Confidence 444455545999999975
No 4
>d2zjda1 d.15.1.3 (A:2-120) Microtubule-associated proteins 1A/1B light chain 3B {Human (Homo sapiens) [TaxId: 9606]}
Probab=7.56 E-value=1.1e+02 Score=17.40 Aligned_cols=15 Identities=33% Similarity=0.348 Sum_probs=13.0
Q ss_pred CCCcCceeEEeeCCC
Q psy4369 55 TPRLDRRKRTVSRQG 69 (71)
Q Consensus 55 ~gRl~R~KvrVsR~~ 69 (71)
++-|+++|.-|+.+-
T Consensus 43 lp~Ldk~KfLVp~d~ 57 (119)
T d2zjda1 43 LPVLDKTKFLVPDHV 57 (119)
T ss_dssp SCCCSCCEEEEETTC
T ss_pred CccccceEEEEecCc
Confidence 688999999999864
No 5
>d2pp4a1 a.277.1.1 (A:119-225) ETO {Human (Homo sapiens) [TaxId: 9606]}
Probab=7.49 E-value=35 Score=20.03 Aligned_cols=28 Identities=25% Similarity=0.420 Sum_probs=18.2
Q ss_pred CCceeeHHH------HHHHHHHhhcchhHHHHHH
Q psy4369 10 CPFLLNFEI------RQLLLYASSFDRDRALQRL 37 (71)
Q Consensus 10 cpFLFPFet------R~~~f~~TsFG~~R~i~~~ 37 (71)
-|||+||=- |+-+..|..++..-..|.+
T Consensus 60 qP~lvPFLK~~LplLr~~l~~~a~~~~Q~p~qyl 93 (107)
T d2pp4a1 60 RPFVIPFLKANLPLLQRELLHCARLAKQNPAQYL 93 (107)
T ss_dssp CTTHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred CCcchhhHHHhhHHHHHHHHHHHHhhcCCcchhh
Confidence 589999953 4556667666655555544
No 6
>d1a5ca_ c.1.10.1 (A:) Fructose-1,6-bisphosphate aldolase {Plasmodium falciparum [TaxId: 5833]}
Probab=7.05 E-value=52 Score=22.56 Aligned_cols=11 Identities=45% Similarity=0.558 Sum_probs=8.9
Q ss_pred hhcchhHHHHH
Q psy4369 26 SSFDRDRALQR 36 (71)
Q Consensus 26 TsFG~~R~i~~ 36 (71)
-+|-|+||||.
T Consensus 291 lsfSygRALQ~ 301 (342)
T d1a5ca_ 291 LTFSYGRALQA 301 (342)
T ss_dssp EEECCSHHHHH
T ss_pred EEEechHHhhH
Confidence 47888999984
No 7
>d2drpa2 g.37.1.1 (A:140-165) Tramtrack protein (two zinc-finger peptide) {Drosophila melanogaster [TaxId: 7227]}
Probab=6.79 E-value=55 Score=14.44 Aligned_cols=7 Identities=43% Similarity=1.307 Sum_probs=4.2
Q ss_pred hCCceee
Q psy4369 9 TCPFLLN 15 (71)
Q Consensus 9 ~cpFLFP 15 (71)
.|||-|-
T Consensus 3 pcp~cfk 9 (26)
T d2drpa2 3 PCPFCFK 9 (26)
T ss_dssp ECTTTCC
T ss_pred CCchhhH
Confidence 4777663
No 8
>d3d32a1 d.15.1.3 (A:1-118) GABA(A) receptor associated protein GABARAP {Human (Homo sapiens) [TaxId: 9606]}
Probab=6.49 E-value=1.3e+02 Score=17.08 Aligned_cols=15 Identities=27% Similarity=0.264 Sum_probs=13.2
Q ss_pred CCCcCceeEEeeCCC
Q psy4369 55 TPRLDRRKRTVSRQG 69 (71)
Q Consensus 55 ~gRl~R~KvrVsR~~ 69 (71)
++-|+++|.-|+++-
T Consensus 43 lp~ldk~KflVp~d~ 57 (118)
T d3d32a1 43 IGDLDKKKYLVPSDL 57 (118)
T ss_dssp SCCCSCSEEEEETTC
T ss_pred CcccccceEEecCCc
Confidence 789999999999874
No 9
>d1eaka4 g.14.1.2 (A:278-335) Gelatinase A (MMP-2) type II modules {Human (Homo sapiens) [TaxId: 9606]}
Probab=6.28 E-value=38 Score=17.50 Aligned_cols=7 Identities=29% Similarity=0.629 Sum_probs=3.9
Q ss_pred CceeeHH
Q psy4369 11 PFLLNFE 17 (71)
Q Consensus 11 pFLFPFe 17 (71)
|..|||.
T Consensus 13 ~C~FPF~ 19 (58)
T d1eaka4 13 PCKFPFR 19 (58)
T ss_dssp CCCSSEE
T ss_pred ccCCCEE
Confidence 5556654
No 10
>d1eaka5 g.14.1.2 (A:336-393) Gelatinase A (MMP-2) type II modules {Human (Homo sapiens) [TaxId: 9606]}
Probab=5.94 E-value=40 Score=17.40 Aligned_cols=7 Identities=29% Similarity=0.790 Sum_probs=3.3
Q ss_pred CceeeHH
Q psy4369 11 PFLLNFE 17 (71)
Q Consensus 11 pFLFPFe 17 (71)
|..|||.
T Consensus 13 ~C~FPF~ 19 (58)
T d1eaka5 13 PCVFPFT 19 (58)
T ss_dssp CCCSSEE
T ss_pred ccCCCEE
Confidence 4455553
Done!