Your job contains 1 sequence.
>psy4369
MVTEHLATTCPFLLNFEIRQLLLYASSFDRDRALQRLVDSTPEINNHSDTQERVTPRLDR
RKRTVSRQGNH
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= psy4369
(71 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
UNIPROTKB|F6X7F9 - symbol:TRIP12 "Uncharacterized protein... 205 7.1e-15 1
UNIPROTKB|E1B7Q7 - symbol:TRIP12 "E3 ubiquitin-protein li... 205 7.2e-15 1
UNIPROTKB|Q14669 - symbol:TRIP12 "E3 ubiquitin-protein li... 205 7.2e-15 1
UNIPROTKB|E2R657 - symbol:TRIP12 "Uncharacterized protein... 205 7.2e-15 1
UNIPROTKB|I3LK74 - symbol:TRIP12 "Uncharacterized protein... 205 7.2e-15 1
UNIPROTKB|J9NRQ4 - symbol:TRIP12 "Uncharacterized protein... 205 7.2e-15 1
MGI|MGI:1309481 - symbol:Trip12 "thyroid hormone receptor... 205 7.3e-15 1
RGD|1306607 - symbol:Trip12 "thyroid hormone receptor int... 205 7.3e-15 1
FB|FBgn0260794 - symbol:ctrip "circadian trip" species:72... 205 1.2e-14 1
UNIPROTKB|E1BZV7 - symbol:TRIP12 "Uncharacterized protein... 203 1.2e-14 1
ZFIN|ZDB-GENE-041111-262 - symbol:trip12 "thyroid hormone... 202 1.6e-14 1
UNIPROTKB|B4F6W9 - symbol:trip12 "E3 ubiquitin-protein li... 201 2.0e-14 1
>UNIPROTKB|F6X7F9 [details] [associations]
symbol:TRIP12 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005622 "intracellular" evidence=IEA]
[GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA]
Pfam:PF00632 InterPro:IPR000569 InterPro:IPR016024 PROSITE:PS50237
SMART:SM00119 SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
GO:GO:0016567 GO:GO:0005622 GO:GO:0004842 InterPro:IPR004170
Pfam:PF02825 PROSITE:PS50918 SUPFAM:SSF56204
GeneTree:ENSGT00530000063470 Ensembl:ENSCAFT00000016899
EMBL:AAEX03014420 Uniprot:F6X7F9
Length = 1980
Score = 205 (77.2 bits), Expect = 7.1e-15, P = 7.1e-15
Identities = 41/68 (60%), Positives = 54/68 (79%)
Query: 2 VTEHLATTCPFLLNFEIRQLLLYASSFDRDRALQRLVDSTPEINNHSDTQE-RVTPRLDR 60
+TE L TCPF F+ RQ+L Y ++FDRDRA+QRL+D+ PEIN SD+Q+ RV PRLDR
Sbjct: 1519 LTE-LGKTCPFFFPFDTRQMLFYVTAFDRDRAMQRLLDTNPEINQ-SDSQDSRVAPRLDR 1576
Query: 61 RKRTVSRQ 68
+KRTV+R+
Sbjct: 1577 KKRTVNRE 1584
>UNIPROTKB|E1B7Q7 [details] [associations]
symbol:TRIP12 "E3 ubiquitin-protein ligase TRIP12"
species:9913 "Bos taurus" [GO:0009790 "embryo development"
evidence=ISS] [GO:0005654 "nucleoplasm" evidence=ISS] [GO:0004842
"ubiquitin-protein ligase activity" evidence=ISS] [GO:2000780
"negative regulation of double-strand break repair" evidence=ISS]
[GO:1901315 "negative regulation of histone H2A K63-linked
ubiquitination" evidence=ISS] [GO:0042787 "protein ubiquitination
involved in ubiquitin-dependent protein catabolic process"
evidence=ISS] [GO:0006974 "response to DNA damage stimulus"
evidence=ISS] [GO:0046966 "thyroid hormone receptor binding"
evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA] Pfam:PF00632
InterPro:IPR000569 InterPro:IPR016024 PROSITE:PS50237 SMART:SM00119
UniPathway:UPA00143 GO:GO:0005654 SUPFAM:SSF48371 Gene3D:1.25.10.10
InterPro:IPR011989 GO:GO:0006281 GO:GO:0006974 GO:GO:0009790
GO:GO:0004842 GO:GO:0042787 InterPro:IPR004170 PROSITE:PS50918
SUPFAM:SSF56204 GeneTree:ENSGT00530000063470 GO:GO:2000780
GO:GO:1901315 KO:K10590 EMBL:DAAA02006173 EMBL:DAAA02006174
EMBL:DAAA02006175 EMBL:BC119851 IPI:IPI00825667
RefSeq:NP_001178132.1 UniGene:Bt.6328 Ensembl:ENSBTAT00000038151
GeneID:514387 KEGG:bta:514387 CTD:9320 OMA:LNMNGCS NextBio:20871310
Uniprot:E1B7Q7
Length = 1992
Score = 205 (77.2 bits), Expect = 7.2e-15, P = 7.2e-15
Identities = 41/68 (60%), Positives = 54/68 (79%)
Query: 2 VTEHLATTCPFLLNFEIRQLLLYASSFDRDRALQRLVDSTPEINNHSDTQE-RVTPRLDR 60
+TE L TCPF F+ RQ+L Y ++FDRDRA+QRL+D+ PEIN SD+Q+ RV PRLDR
Sbjct: 1531 LTE-LGKTCPFFFPFDTRQMLFYVTAFDRDRAMQRLLDTNPEINQ-SDSQDSRVAPRLDR 1588
Query: 61 RKRTVSRQ 68
+KRTV+R+
Sbjct: 1589 KKRTVNRE 1596
>UNIPROTKB|Q14669 [details] [associations]
symbol:TRIP12 "E3 ubiquitin-protein ligase TRIP12"
species:9606 "Homo sapiens" [GO:0006281 "DNA repair" evidence=IEA]
[GO:0016567 "protein ubiquitination" evidence=NAS] [GO:0004842
"ubiquitin-protein ligase activity" evidence=IDA;IMP;NAS;IBA]
[GO:0005634 "nucleus" evidence=IBA] [GO:0005737 "cytoplasm"
evidence=IBA] [GO:0042787 "protein ubiquitination involved in
ubiquitin-dependent protein catabolic process"
evidence=IDA;IMP;IBA] [GO:0046966 "thyroid hormone receptor
binding" evidence=IDA] [GO:0005575 "cellular_component"
evidence=ND] [GO:1901315 "negative regulation of histone H2A
K63-linked ubiquitination" evidence=IMP] [GO:0006974 "response to
DNA damage stimulus" evidence=IMP] [GO:2000780 "negative regulation
of double-strand break repair" evidence=IMP] [GO:0005654
"nucleoplasm" evidence=IDA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0009790 "embryo development" evidence=ISS]
Pfam:PF00632 InterPro:IPR000569 InterPro:IPR016024 PROSITE:PS50237
SMART:SM00119 UniPathway:UPA00143 GO:GO:0005737 Reactome:REACT_6900
GO:GO:0005654 SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
GO:GO:0006281 GO:GO:0006974 GO:GO:0009790 GO:GO:0004842
GO:GO:0046966 GO:GO:0042787 InterPro:IPR004170 PROSITE:PS50918
EMBL:AC093384 SUPFAM:SSF56204 eggNOG:COG5021 GO:GO:2000780
GO:GO:1901315 KO:K10590 CTD:9320 OMA:LNMNGCS EMBL:EU489742
EMBL:D28476 EMBL:AC009973 EMBL:AC105380 EMBL:BC114556 EMBL:BC113891
EMBL:L40383 IPI:IPI00032342 IPI:IPI00783250 IPI:IPI00871861
RefSeq:NP_004229.1 UniGene:Hs.591633 ProteinModelPortal:Q14669
SMR:Q14669 DIP:DIP-58584N IntAct:Q14669 MINT:MINT-1192877
STRING:Q14669 PhosphoSite:Q14669 DMDM:2499839 PaxDb:Q14669
PRIDE:Q14669 Ensembl:ENST00000283943 Ensembl:ENST00000389044
Ensembl:ENST00000389045 GeneID:9320 KEGG:hsa:9320 UCSC:uc002vpw.1
GeneCards:GC02M230595 HGNC:HGNC:12306 MIM:604506 neXtProt:NX_Q14669
PharmGKB:PA36985 HOGENOM:HOG000007873 HOVERGEN:HBG062085
OrthoDB:EOG4MCWZF ChiTaRS:TRIP12 GenomeRNAi:9320 NextBio:34913
ArrayExpress:Q14669 Bgee:Q14669 CleanEx:HS_TRIP12
Genevestigator:Q14669 GermOnline:ENSG00000153827 Uniprot:Q14669
Length = 1992
Score = 205 (77.2 bits), Expect = 7.2e-15, P = 7.2e-15
Identities = 41/68 (60%), Positives = 54/68 (79%)
Query: 2 VTEHLATTCPFLLNFEIRQLLLYASSFDRDRALQRLVDSTPEINNHSDTQE-RVTPRLDR 60
+TE L TCPF F+ RQ+L Y ++FDRDRA+QRL+D+ PEIN SD+Q+ RV PRLDR
Sbjct: 1531 LTE-LGKTCPFFFPFDTRQMLFYVTAFDRDRAMQRLLDTNPEINQ-SDSQDSRVAPRLDR 1588
Query: 61 RKRTVSRQ 68
+KRTV+R+
Sbjct: 1589 KKRTVNRE 1596
>UNIPROTKB|E2R657 [details] [associations]
symbol:TRIP12 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005622 "intracellular" evidence=IEA]
[GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA]
Pfam:PF00632 InterPro:IPR000569 InterPro:IPR016024 PROSITE:PS50237
SMART:SM00119 SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
GO:GO:0016567 GO:GO:0005622 GO:GO:0004842 InterPro:IPR004170
PROSITE:PS50918 SUPFAM:SSF56204 Ensembl:ENSCAFT00000016899
Uniprot:E2R657
Length = 1993
Score = 205 (77.2 bits), Expect = 7.2e-15, P = 7.2e-15
Identities = 41/68 (60%), Positives = 54/68 (79%)
Query: 2 VTEHLATTCPFLLNFEIRQLLLYASSFDRDRALQRLVDSTPEINNHSDTQE-RVTPRLDR 60
+TE L TCPF F+ RQ+L Y ++FDRDRA+QRL+D+ PEIN SD+Q+ RV PRLDR
Sbjct: 1532 LTE-LGKTCPFFFPFDTRQMLFYVTAFDRDRAMQRLLDTNPEINQ-SDSQDSRVAPRLDR 1589
Query: 61 RKRTVSRQ 68
+KRTV+R+
Sbjct: 1590 KKRTVNRE 1597
>UNIPROTKB|I3LK74 [details] [associations]
symbol:TRIP12 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:2000780 "negative regulation of double-strand break
repair" evidence=IEA] [GO:1901315 "negative regulation of histone
H2A K63-linked ubiquitination" evidence=IEA] [GO:0046966 "thyroid
hormone receptor binding" evidence=IEA] [GO:0009790 "embryo
development" evidence=IEA] [GO:0006974 "response to DNA damage
stimulus" evidence=IEA] [GO:0005654 "nucleoplasm" evidence=IEA]
[GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA]
Pfam:PF00632 InterPro:IPR000569 InterPro:IPR016024 PROSITE:PS50237
SMART:SM00119 SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
GO:GO:0016567 GO:GO:0005622 GO:GO:0004842 InterPro:IPR004170
Pfam:PF02825 PROSITE:PS50918 SUPFAM:SSF56204
GeneTree:ENSGT00530000063470 OMA:LNMNGCS Ensembl:ENSSSCT00000029290
Uniprot:I3LK74
Length = 2002
Score = 205 (77.2 bits), Expect = 7.2e-15, P = 7.2e-15
Identities = 41/68 (60%), Positives = 54/68 (79%)
Query: 2 VTEHLATTCPFLLNFEIRQLLLYASSFDRDRALQRLVDSTPEINNHSDTQE-RVTPRLDR 60
+TE L TCPF F+ RQ+L Y ++FDRDRA+QRL+D+ PEIN SD+Q+ RV PRLDR
Sbjct: 1568 LTE-LGKTCPFFFPFDTRQMLFYVTAFDRDRAMQRLLDTNPEINQ-SDSQDSRVAPRLDR 1625
Query: 61 RKRTVSRQ 68
+KRTV+R+
Sbjct: 1626 KKRTVNRE 1633
>UNIPROTKB|J9NRQ4 [details] [associations]
symbol:TRIP12 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005622 "intracellular" evidence=IEA]
[GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA]
Pfam:PF00632 InterPro:IPR000569 InterPro:IPR016024 PROSITE:PS50237
SMART:SM00119 SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
GO:GO:0016567 GO:GO:0005622 GO:GO:0004842 InterPro:IPR004170
PROSITE:PS50918 SUPFAM:SSF56204 GeneTree:ENSGT00530000063470
EMBL:AAEX03014420 Ensembl:ENSCAFT00000045557 OMA:GNGTGGX
Uniprot:J9NRQ4
Length = 2011
Score = 205 (77.2 bits), Expect = 7.2e-15, P = 7.2e-15
Identities = 41/68 (60%), Positives = 54/68 (79%)
Query: 2 VTEHLATTCPFLLNFEIRQLLLYASSFDRDRALQRLVDSTPEINNHSDTQE-RVTPRLDR 60
+TE L TCPF F+ RQ+L Y ++FDRDRA+QRL+D+ PEIN SD+Q+ RV PRLDR
Sbjct: 1550 LTE-LGKTCPFFFPFDTRQMLFYVTAFDRDRAMQRLLDTNPEINQ-SDSQDSRVAPRLDR 1607
Query: 61 RKRTVSRQ 68
+KRTV+R+
Sbjct: 1608 KKRTVNRE 1615
>MGI|MGI:1309481 [details] [associations]
symbol:Trip12 "thyroid hormone receptor interactor 12"
species:10090 "Mus musculus" [GO:0004842 "ubiquitin-protein ligase
activity" evidence=ISO;IBA] [GO:0005622 "intracellular"
evidence=IEA] [GO:0005634 "nucleus" evidence=IBA] [GO:0005654
"nucleoplasm" evidence=ISO] [GO:0005737 "cytoplasm" evidence=IBA]
[GO:0006281 "DNA repair" evidence=IEA] [GO:0006464 "cellular
protein modification process" evidence=IEA] [GO:0006974 "response
to DNA damage stimulus" evidence=ISO] [GO:0009790 "embryo
development" evidence=IMP] [GO:0016874 "ligase activity"
evidence=IEA] [GO:0042787 "protein ubiquitination involved in
ubiquitin-dependent protein catabolic process" evidence=ISO;IBA]
[GO:0046966 "thyroid hormone receptor binding" evidence=ISO]
[GO:1901315 "negative regulation of histone H2A K63-linked
ubiquitination" evidence=ISO] [GO:2000780 "negative regulation of
double-strand break repair" evidence=ISO] Pfam:PF00632
InterPro:IPR000569 InterPro:IPR016024 PROSITE:PS50237 SMART:SM00119
UniPathway:UPA00143 MGI:MGI:1309481 GO:GO:0005737 GO:GO:0005654
SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0006281
GO:GO:0006974 GO:GO:0009790 GO:GO:0004842 GO:GO:0042787
InterPro:IPR004170 Pfam:PF02825 PROSITE:PS50918 SUPFAM:SSF56204
GeneTree:ENSGT00530000063470 GO:GO:2000780 GO:GO:1901315 KO:K10590
CTD:9320 OMA:LNMNGCS ChiTaRS:TRIP12 EMBL:AC123882 EMBL:CH466629
EMBL:AK034814 EMBL:AK134397 EMBL:AK158807 EMBL:BC034113
RefSeq:NP_598736.4 UniGene:Mm.209265 IntAct:G5E870 PRIDE:G5E870
Ensembl:ENSMUST00000027421 GeneID:14897 KEGG:mmu:14897
NextBio:287187 Bgee:G5E870 Uniprot:G5E870
Length = 2025
Score = 205 (77.2 bits), Expect = 7.3e-15, P = 7.3e-15
Identities = 41/68 (60%), Positives = 54/68 (79%)
Query: 2 VTEHLATTCPFLLNFEIRQLLLYASSFDRDRALQRLVDSTPEINNHSDTQE-RVTPRLDR 60
+TE L TCPF F+ RQ+L Y ++FDRDRA+QRL+D+ PEIN SD+Q+ RV PRLDR
Sbjct: 1564 LTE-LGKTCPFFFPFDTRQMLFYVTAFDRDRAMQRLLDTNPEINQ-SDSQDSRVAPRLDR 1621
Query: 61 RKRTVSRQ 68
+KRTV+R+
Sbjct: 1622 KKRTVNRE 1629
>RGD|1306607 [details] [associations]
symbol:Trip12 "thyroid hormone receptor interactor 12"
species:10116 "Rattus norvegicus" [GO:0004842 "ubiquitin-protein
ligase activity" evidence=ISO;ISS;IBA] [GO:0005634 "nucleus"
evidence=IBA] [GO:0005654 "nucleoplasm" evidence=ISO;ISS]
[GO:0005737 "cytoplasm" evidence=IBA] [GO:0006281 "DNA repair"
evidence=IEA] [GO:0006974 "response to DNA damage stimulus"
evidence=ISO;ISS] [GO:0009790 "embryo development"
evidence=ISO;ISS] [GO:0042787 "protein ubiquitination involved in
ubiquitin-dependent protein catabolic process"
evidence=ISO;ISS;IBA] [GO:0046966 "thyroid hormone receptor
binding" evidence=ISO] [GO:1901315 "negative regulation of histone
H2A K63-linked ubiquitination" evidence=ISO;ISS] [GO:2000780
"negative regulation of double-strand break repair"
evidence=ISO;ISS] Pfam:PF00632 InterPro:IPR000569
InterPro:IPR016024 PROSITE:PS50237 SMART:SM00119
UniPathway:UPA00143 RGD:1306607 GO:GO:0005737 GO:GO:0005654
SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0006281
GO:GO:0006974 GO:GO:0009790 GO:GO:0004842 GO:GO:0042787
InterPro:IPR004170 Pfam:PF02825 PROSITE:PS50918 SUPFAM:SSF56204
GO:GO:2000780 GO:GO:1901315 KO:K10590 CTD:9320 EMBL:BC088304
EMBL:BC100624 IPI:IPI00362998 RefSeq:NP_001026829.1 UniGene:Rn.8277
PRIDE:F1LP64 Ensembl:ENSRNOT00000022873 GeneID:316575
KEGG:rno:316575 NextBio:671026 ArrayExpress:F1LP64 Uniprot:F1LP64
Length = 2025
Score = 205 (77.2 bits), Expect = 7.3e-15, P = 7.3e-15
Identities = 41/68 (60%), Positives = 54/68 (79%)
Query: 2 VTEHLATTCPFLLNFEIRQLLLYASSFDRDRALQRLVDSTPEINNHSDTQE-RVTPRLDR 60
+TE L TCPF F+ RQ+L Y ++FDRDRA+QRL+D+ PEIN SD+Q+ RV PRLDR
Sbjct: 1564 LTE-LGKTCPFFFPFDTRQMLFYVTAFDRDRAMQRLLDTNPEINQ-SDSQDSRVAPRLDR 1621
Query: 61 RKRTVSRQ 68
+KRTV+R+
Sbjct: 1622 KKRTVNRE 1629
>FB|FBgn0260794 [details] [associations]
symbol:ctrip "circadian trip" species:7227 "Drosophila
melanogaster" [GO:0016922 "ligand-dependent nuclear receptor
binding" evidence=ISS] [GO:0004842 "ubiquitin-protein ligase
activity" evidence=IEA] [GO:0006464 "cellular protein modification
process" evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0005622 "intracellular" evidence=IEA] [GO:0042752 "regulation
of circadian rhythm" evidence=IMP] [GO:0022008 "neurogenesis"
evidence=IMP] Pfam:PF00632 InterPro:IPR000569 InterPro:IPR016024
InterPro:IPR018123 PROSITE:PS50237 SMART:SM00119 SMART:SM00678
EMBL:AE014297 SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
GO:GO:0022008 GO:GO:0008270 GO:GO:0042752 GO:GO:0016567
GO:GO:0005622 GO:GO:0004842 InterPro:IPR004170 Pfam:PF02825
PROSITE:PS50918 SUPFAM:SSF56204 GeneTree:ENSGT00530000063470
RefSeq:NP_001189170.1 RefSeq:NP_649496.3 STRING:Q9VN58
EnsemblMetazoa:FBtr0301437 EnsemblMetazoa:FBtr0303911 GeneID:40596
KEGG:dme:Dmel_CG42574 UCSC:CG17735-RB FlyBase:FBgn0260794
InParanoid:Q9VN58 OMA:SAGANEN OrthoDB:EOG47H44W PhylomeDB:Q9VN58
GenomeRNAi:40596 NextBio:819575 ArrayExpress:Q9VN58 Bgee:Q9VN58
Uniprot:Q9VN58
Length = 3140
Score = 205 (77.2 bits), Expect = 1.2e-14, P = 1.2e-14
Identities = 39/62 (62%), Positives = 49/62 (79%)
Query: 6 LATTCPFLLNFEIRQLLLYASSFDRDRALQRLVDSTPEINNHSDTQERVTPRLDRRKRTV 65
+ CPFL FE R LL YA+SFDRDRALQRL+D+TP++N +++ ERV PRLDRRKR +
Sbjct: 2547 IGMACPFLFPFETRHLLFYATSFDRDRALQRLLDTTPDLNA-AESSERVAPRLDRRKRAI 2605
Query: 66 SR 67
SR
Sbjct: 2606 SR 2607
>UNIPROTKB|E1BZV7 [details] [associations]
symbol:TRIP12 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0004842 "ubiquitin-protein ligase activity"
evidence=IEA] [GO:0005654 "nucleoplasm" evidence=IEA] [GO:0006974
"response to DNA damage stimulus" evidence=IEA] [GO:0009790 "embryo
development" evidence=IEA] [GO:0046966 "thyroid hormone receptor
binding" evidence=IEA] [GO:1901315 "negative regulation of histone
H2A K63-linked ubiquitination" evidence=IEA] [GO:2000780 "negative
regulation of double-strand break repair" evidence=IEA]
Pfam:PF00632 InterPro:IPR000569 InterPro:IPR016024 PROSITE:PS50237
SMART:SM00119 SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
GO:GO:0016567 GO:GO:0005622 GO:GO:0004842 InterPro:IPR004170
PROSITE:PS50918 SUPFAM:SSF56204 GeneTree:ENSGT00530000063470
OMA:LNMNGCS EMBL:AC147645 IPI:IPI00588987
Ensembl:ENSGALT00000004623 Uniprot:E1BZV7
Length = 2035
Score = 203 (76.5 bits), Expect = 1.2e-14, P = 1.2e-14
Identities = 41/67 (61%), Positives = 53/67 (79%)
Query: 2 VTEHLATTCPFLLNFEIRQLLLYASSFDRDRALQRLVDSTPEINNHSDTQE-RVTPRLDR 60
+TE L TCPF F+ RQ+L Y ++FDRDRA+QRL+D+ PEIN SD+Q+ RV PRLDR
Sbjct: 1574 LTE-LGKTCPFFFPFDTRQMLFYVTAFDRDRAMQRLLDTNPEINQ-SDSQDSRVAPRLDR 1631
Query: 61 RKRTVSR 67
+KRTV+R
Sbjct: 1632 KKRTVNR 1638
>ZFIN|ZDB-GENE-041111-262 [details] [associations]
symbol:trip12 "thyroid hormone receptor interactor
12" species:7955 "Danio rerio" [GO:0005622 "intracellular"
evidence=IEA] [GO:0006464 "cellular protein modification process"
evidence=IEA] [GO:0004842 "ubiquitin-protein ligase activity"
evidence=IEA;ISS] [GO:0006974 "response to DNA damage stimulus"
evidence=IEA;ISS] [GO:1901315 "negative regulation of histone H2A
K63-linked ubiquitination" evidence=ISS] [GO:0005654 "nucleoplasm"
evidence=ISS] [GO:2000780 "negative regulation of double-strand
break repair" evidence=ISS] [GO:0009790 "embryo development"
evidence=ISS] [GO:0042787 "protein ubiquitination involved in
ubiquitin-dependent protein catabolic process" evidence=ISS]
[GO:0006281 "DNA repair" evidence=IEA] [GO:0016874 "ligase
activity" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
Pfam:PF00632 InterPro:IPR000569 InterPro:IPR016024 PROSITE:PS50237
SMART:SM00119 ZFIN:ZDB-GENE-041111-262 SUPFAM:SSF48371
Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0016567 GO:GO:0005622
GO:GO:0004842 InterPro:IPR004170 Pfam:PF02825 PROSITE:PS50918
SUPFAM:SSF56204 GeneTree:ENSGT00530000063470 EMBL:BX255887
EMBL:CU928079 IPI:IPI00866688 Ensembl:ENSDART00000087566
ArrayExpress:F1Q529 Bgee:F1Q529 Uniprot:F1Q529
Length = 2095
Score = 202 (76.2 bits), Expect = 1.6e-14, P = 1.6e-14
Identities = 40/67 (59%), Positives = 53/67 (79%)
Query: 2 VTEHLATTCPFLLNFEIRQLLLYASSFDRDRALQRLVDSTPEINNHSDTQE-RVTPRLDR 60
+TE L TCPF F+ RQ+L Y ++FDRDRA+QRL+D+ PEIN SD+Q+ RV PRLDR
Sbjct: 1634 LTE-LGKTCPFFFPFDTRQMLFYVTAFDRDRAMQRLLDTNPEINQ-SDSQDSRVAPRLDR 1691
Query: 61 RKRTVSR 67
+KRT++R
Sbjct: 1692 KKRTINR 1698
>UNIPROTKB|B4F6W9 [details] [associations]
symbol:trip12 "E3 ubiquitin-protein ligase TRIP12"
species:8364 "Xenopus (Silurana) tropicalis" [GO:0004842
"ubiquitin-protein ligase activity" evidence=ISS] [GO:0005654
"nucleoplasm" evidence=ISS] [GO:0006974 "response to DNA damage
stimulus" evidence=ISS] [GO:0009790 "embryo development"
evidence=ISS] [GO:0042787 "protein ubiquitination involved in
ubiquitin-dependent protein catabolic process" evidence=ISS]
[GO:1901315 "negative regulation of histone H2A K63-linked
ubiquitination" evidence=ISS] [GO:2000780 "negative regulation of
double-strand break repair" evidence=ISS] Pfam:PF00632
InterPro:IPR000569 InterPro:IPR016024 PROSITE:PS50237 SMART:SM00119
UniPathway:UPA00143 GO:GO:0005654 SUPFAM:SSF48371 Gene3D:1.25.10.10
InterPro:IPR011989 GO:GO:0006281 GO:GO:0006974 GO:GO:0009790
GO:GO:0004842 GO:GO:0042787 InterPro:IPR004170 Pfam:PF02825
PROSITE:PS50918 SUPFAM:SSF56204 GO:GO:2000780 GO:GO:1901315
KO:K10590 CTD:9320 HOVERGEN:HBG062085 EMBL:AAMC01022090
EMBL:AAMC01022091 EMBL:AAMC01022092 EMBL:AAMC01022093
EMBL:AAMC01022094 EMBL:AAMC01022095 EMBL:AAMC01022096 EMBL:BC168042
EMBL:BC166201 RefSeq:NP_001136384.1 UniGene:Str.66021
ProteinModelPortal:B4F6W9 STRING:B4F6W9 GeneID:100158539
KEGG:xtr:100158539 Xenbase:XB-GENE-6071044 Uniprot:B4F6W9
Length = 2056
Score = 201 (75.8 bits), Expect = 2.0e-14, P = 2.0e-14
Identities = 40/68 (58%), Positives = 54/68 (79%)
Query: 2 VTEHLATTCPFLLNFEIRQLLLYASSFDRDRALQRLVDSTPEINNHSDTQE-RVTPRLDR 60
+TE L +CPF F+ RQ+L Y ++FDRDRA+QRL+D+ PEIN SD+Q+ RV PRLDR
Sbjct: 1595 LTE-LGKSCPFFFPFDTRQMLFYVTAFDRDRAMQRLLDTNPEINQ-SDSQDSRVAPRLDR 1652
Query: 61 RKRTVSRQ 68
+KRTV+R+
Sbjct: 1653 KKRTVNRE 1660
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.322 0.133 0.383 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 71 71 0.00091 102 3 11 22 0.43 28
29 0.42 29
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 12
No. of states in DFA: 467 (50 KB)
Total size of DFA: 81 KB (2064 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 9.33u 0.06s 9.39t Elapsed: 00:00:13
Total cpu time: 9.33u 0.06s 9.39t Elapsed: 00:00:16
Start: Thu Aug 15 14:17:46 2013 End: Thu Aug 15 14:18:02 2013