RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy4369
         (71 letters)



>d1x6fa1 g.37.1.1 (A:8-82) Zinc finger protein 462, ZNF462 {Human
          (Homo sapiens) [TaxId: 9606]}
          Length = 75

 Score = 25.4 bits (55), Expect = 0.30
 Identities = 12/38 (31%), Positives = 22/38 (57%)

Query: 31 DRALQRLVDSTPEINNHSDTQERVTPRLDRRKRTVSRQ 68
          D  LQ   + T  +N H++  ++   R +RRK+ +S+Q
Sbjct: 25 DSKLQSTAELTSHLNIHNEEFQKRAKRQERRKQLLSKQ 62


>d2ahme1 d.302.1.1 (E:43-197) Nonstructural protein 8, NSP8 {SARS
          coronavirus [TaxId: 227859]}
          Length = 155

 Score = 22.9 bits (49), Expect = 3.7
 Identities = 13/42 (30%), Positives = 19/42 (45%), Gaps = 4/42 (9%)

Query: 26 SSFDRDRALQRLVDSTPEINNHSD-TQERVTPRLDRRKRTVS 66
          S FDRD A+QR ++   +        Q R     D+R +  S
Sbjct: 10 SEFDRDAAMQRKLEKMADQAMTQMYKQARSE---DKRAKVTS 48


>d1se0a_ g.52.1.1 (A:) BIR domains of DIAP1 {Fruit fly (Drosophila
          melanogaster) [TaxId: 7227]}
          Length = 97

 Score = 22.1 bits (47), Expect = 6.4
 Identities = 9/31 (29%), Positives = 13/31 (41%), Gaps = 2/31 (6%)

Query: 2  VTEHL--ATTCPFLLNFEIRQLLLYASSFDR 30
          V EH   +  CP L       + + A + DR
Sbjct: 59 VPEHQRWSPNCPLLRRRTTNNVPINAEALDR 89


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.322    0.133    0.383 

Gapped
Lambda     K      H
   0.267   0.0455    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 237,456
Number of extensions: 7736
Number of successful extensions: 8
Number of sequences better than 10.0: 1
Number of HSP's gapped: 8
Number of HSP's successfully gapped: 4
Length of query: 71
Length of database: 2,407,596
Length adjustment: 39
Effective length of query: 32
Effective length of database: 1,872,126
Effective search space: 59908032
Effective search space used: 59908032
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 47 (22.6 bits)