BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy437
(184 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9DEY9|BLM_XENLA Bloom syndrome protein homolog OS=Xenopus laevis GN=blm PE=2 SV=1
Length = 1364
Score = 93.2 bits (230), Expect = 8e-19, Method: Composition-based stats.
Identities = 44/84 (52%), Positives = 58/84 (69%), Gaps = 2/84 (2%)
Query: 1 FISSFNRANLKYEILPKK--NVLKEVISLIKAKYSGQSGIVYCLTRKECDSVAAALAQER 58
F SFNR NLKYE+LPKK V + + IK + SGI+YCL+R ECD++A L +E
Sbjct: 805 FTMSFNRDNLKYEVLPKKPKRVALDCVEWIKKHHPNDSGIIYCLSRHECDTMADTLQKEG 864
Query: 59 INAISYHAGLADKLRNEVQMKWIS 82
+ A++YHAGLAD R+ VQ KWI+
Sbjct: 865 LAALAYHAGLADSNRDYVQHKWIN 888
>sp|O18017|BLM_CAEEL Bloom syndrome protein homolog OS=Caenorhabditis elegans GN=him-6
PE=2 SV=2
Length = 988
Score = 92.4 bits (228), Expect = 2e-18, Method: Composition-based stats.
Identities = 46/88 (52%), Positives = 59/88 (67%), Gaps = 1/88 (1%)
Query: 1 FISSFNRANLKYEILPKK-NVLKEVISLIKAKYSGQSGIVYCLTRKECDSVAAALAQERI 59
FISSF R NLKY+++PK L V+ +K Y G+SGIVYCL+RKEC++V L + +
Sbjct: 435 FISSFVRDNLKYDLIPKAARSLINVVEKMKQLYPGKSGIVYCLSRKECETVQMMLTKAGL 494
Query: 60 NAISYHAGLADKLRNEVQMKWISNKVHV 87
+A YHAGL D LR VQ WI+NK V
Sbjct: 495 SAEVYHAGLNDNLRVSVQRSWIANKFDV 522
>sp|Q9VGI8|BLM_DROME Bloom syndrome protein homolog OS=Drosophila melanogaster GN=mus309
PE=1 SV=1
Length = 1487
Score = 91.7 bits (226), Expect = 3e-18, Method: Composition-based stats.
Identities = 41/89 (46%), Positives = 60/89 (67%), Gaps = 2/89 (2%)
Query: 1 FISSFNRANLKYEILPKKNV--LKEVISLIKAKYSGQSGIVYCLTRKECDSVAAALAQER 58
F+SSFNR+NL+Y +LPKK V L ++ I++K SGI+YCL+RKECD + + ++
Sbjct: 923 FLSSFNRSNLRYRVLPKKGVSTLDDISRYIRSKPQHFSGIIYCLSRKECDETSKKMCKDG 982
Query: 59 INAISYHAGLADKLRNEVQMKWISNKVHV 87
+ A+SYHAGL D R Q W++ K+ V
Sbjct: 983 VRAVSYHAGLTDTDRESRQKDWLTGKMRV 1011
>sp|O88700|BLM_MOUSE Bloom syndrome protein homolog OS=Mus musculus GN=Blm PE=1 SV=1
Length = 1416
Score = 90.5 bits (223), Expect = 5e-18, Method: Composition-based stats.
Identities = 42/84 (50%), Positives = 59/84 (70%), Gaps = 2/84 (2%)
Query: 1 FISSFNRANLKYEILPKK--NVLKEVISLIKAKYSGQSGIVYCLTRKECDSVAAALAQER 58
F SFNR NLKY +LPKK V + + I+ + SGI+YCL+R+ECD++A L +E
Sbjct: 861 FSMSFNRHNLKYYVLPKKPKKVAFDCLEWIRKHHPYDSGIIYCLSRRECDTMADTLQREG 920
Query: 59 INAISYHAGLADKLRNEVQMKWIS 82
+ A++YHAGL+D R+EVQ KWI+
Sbjct: 921 LAALAYHAGLSDSARDEVQHKWIN 944
>sp|Q9I920|BLM_CHICK Bloom syndrome protein homolog (Fragment) OS=Gallus gallus GN=BLM
PE=2 SV=1
Length = 1142
Score = 90.1 bits (222), Expect = 7e-18, Method: Composition-based stats.
Identities = 42/86 (48%), Positives = 58/86 (67%), Gaps = 2/86 (2%)
Query: 1 FISSFNRANLKYEILPKK--NVLKEVISLIKAKYSGQSGIVYCLTRKECDSVAAALAQER 58
F SFNR NLKY++LPKK V + + IK + SGI+YCL+R ECD+ AA L +E
Sbjct: 583 FTMSFNRHNLKYDVLPKKPKKVAMDCLEWIKKYHPHDSGIIYCLSRHECDTTAAILQKEG 642
Query: 59 INAISYHAGLADKLRNEVQMKWISNK 84
+ A++YHAGL D R+ VQ KW++ +
Sbjct: 643 LAALAYHAGLTDSNRDLVQKKWVNQE 668
>sp|P54132|BLM_HUMAN Bloom syndrome protein OS=Homo sapiens GN=BLM PE=1 SV=1
Length = 1417
Score = 89.4 bits (220), Expect = 1e-17, Method: Composition-based stats.
Identities = 41/84 (48%), Positives = 59/84 (70%), Gaps = 2/84 (2%)
Query: 1 FISSFNRANLKYEILPKK--NVLKEVISLIKAKYSGQSGIVYCLTRKECDSVAAALAQER 58
F SFNR NLKY +LPKK V + + I+ + SGI+YCL+R+ECD++A L ++
Sbjct: 853 FSMSFNRHNLKYYVLPKKPKKVAFDCLEWIRKHHPYDSGIIYCLSRRECDTMADTLQRDG 912
Query: 59 INAISYHAGLADKLRNEVQMKWIS 82
+ A++YHAGL+D R+EVQ KWI+
Sbjct: 913 LAALAYHAGLSDSARDEVQQKWIN 936
>sp|Q9FT74|RQL1_ARATH ATP-dependent DNA helicase Q-like 1 OS=Arabidopsis thaliana
GN=RECQL1 PE=2 SV=1
Length = 606
Score = 76.3 bits (186), Expect = 1e-13, Method: Composition-based stats.
Identities = 37/86 (43%), Positives = 58/86 (67%), Gaps = 2/86 (2%)
Query: 4 SFNRANLKYEILPK-KNVLKEVISLIKAKYSGQSGIVYCLTRKECDSVAAALAQE-RINA 61
SF+R NLKYE++ K K LK++ L++ ++ QSGIVYCL++ EC VA L ++ ++
Sbjct: 396 SFDRINLKYEVIVKTKEPLKQLQELLRDRFKDQSGIVYCLSKSECVDVAKFLNEKCKVKT 455
Query: 62 ISYHAGLADKLRNEVQMKWISNKVHV 87
+ YHAG+ K R +VQ KW + +V +
Sbjct: 456 VYYHAGVPAKQRVDVQRKWQTGEVRI 481
>sp|Q9FT73|MED34_ARATH Mediator of RNA polymerase II transcription subunit 34
OS=Arabidopsis thaliana GN=MED34 PE=1 SV=1
Length = 705
Score = 75.9 bits (185), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 41/97 (42%), Positives = 57/97 (58%), Gaps = 5/97 (5%)
Query: 1 FISSFNRANLKYEILPK----KNVLKEVISLIKAKYSG-QSGIVYCLTRKECDSVAAALA 55
F+SS NR NL Y + K K V+ E+ I+ YS +SGIVYC +RKEC+ +A L
Sbjct: 275 FVSSVNRPNLFYSVREKSAVGKLVVDEIAEFIRESYSNNESGIVYCFSRKECEQIAGDLR 334
Query: 56 QERINAISYHAGLADKLRNEVQMKWISNKVHVGHWTV 92
+ I+A YHA + +R +V M+W NK+ V TV
Sbjct: 335 ERGISADYYHADMDANMREKVHMRWSKNKLQVIVGTV 371
>sp|P46063|RECQ1_HUMAN ATP-dependent DNA helicase Q1 OS=Homo sapiens GN=RECQL PE=1 SV=3
Length = 649
Score = 73.9 bits (180), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 36/96 (37%), Positives = 59/96 (61%), Gaps = 4/96 (4%)
Query: 1 FISSFNRANLKYEILPK----KNVLKEVISLIKAKYSGQSGIVYCLTRKECDSVAAALAQ 56
F +SFNR NL YE+ K ++ +++++ LI +Y GQSGI+YC ++K+ + V +L
Sbjct: 277 FTASFNRPNLYYEVRQKPSNTEDFIEDIVKLINGRYKGQSGIIYCFSQKDSEQVTVSLQN 336
Query: 57 ERINAISYHAGLADKLRNEVQMKWISNKVHVGHWTV 92
I+A +YHA L + + V KW +N++ V TV
Sbjct: 337 LGIHAGAYHANLEPEDKTTVHRKWSANEIQVVVATV 372
>sp|Q5RF63|RECQ1_PONAB ATP-dependent DNA helicase Q1 OS=Pongo abelii GN=RECQL PE=2 SV=1
Length = 649
Score = 73.6 bits (179), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 36/96 (37%), Positives = 59/96 (61%), Gaps = 4/96 (4%)
Query: 1 FISSFNRANLKYEILPK----KNVLKEVISLIKAKYSGQSGIVYCLTRKECDSVAAALAQ 56
F +SFNR NL YE+ K ++ +++++ LI +Y GQSGI+YC ++K+ + V +L
Sbjct: 277 FTASFNRPNLYYEVRQKPSNTEDFIEDIVKLINGRYKGQSGIIYCFSQKDSEQVTVSLRN 336
Query: 57 ERINAISYHAGLADKLRNEVQMKWISNKVHVGHWTV 92
I+A +YHA L + + V KW +N++ V TV
Sbjct: 337 LGIHAGAYHANLEPEDKTTVHRKWSANEIQVVVATV 372
>sp|Q9TXJ8|RECQ1_CAEEL Putative ATP-dependent DNA helicase Q1 OS=Caenorhabditis elegans
GN=K02F3.12 PE=3 SV=3
Length = 631
Score = 73.2 bits (178), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 36/91 (39%), Positives = 53/91 (58%), Gaps = 4/91 (4%)
Query: 1 FISSFNRANLKYEILPKKN----VLKEVISLIKAKYSGQSGIVYCLTRKECDSVAAALAQ 56
F + FNR+NLKY+++ K +E+ IK ++GQ+GI+YCL+R +C+ VA AL
Sbjct: 295 FRAGFNRSNLKYKVVQKPGSEDECTEEIAKTIKRDFAGQTGIIYCLSRNDCEKVAKALKS 354
Query: 57 ERINAISYHAGLADKLRNEVQMKWISNKVHV 87
I A YHA + R+ WIS K+ V
Sbjct: 355 HGIKAKHYHAYMEPVDRSGAHQGWISGKIQV 385
>sp|A8WK63|RECQ1_CAEBR Putative ATP-dependent DNA helicase Q1 OS=Caenorhabditis briggsae
GN=CBG24191 PE=3 SV=1
Length = 618
Score = 72.8 bits (177), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 36/96 (37%), Positives = 58/96 (60%), Gaps = 4/96 (4%)
Query: 1 FISSFNRANLKYEILPKKN----VLKEVISLIKAKYSGQSGIVYCLTRKECDSVAAALAQ 56
F + FNRANL Y++L K +++++ IK K+SG++GI+YCL+R +C+ +A +L
Sbjct: 272 FRAGFNRANLNYKVLTKPGSEDECVEKIVRTIKRKFSGKTGIIYCLSRNDCEKLAKSLKA 331
Query: 57 ERINAISYHAGLADKLRNEVQMKWISNKVHVGHWTV 92
I A YHA + R+ KW+S ++ V TV
Sbjct: 332 NGIRAKHYHAYMEPVDRSAAHQKWVSGEIQVIVATV 367
>sp|Q9Z129|RECQ1_MOUSE ATP-dependent DNA helicase Q1 OS=Mus musculus GN=Recql PE=1 SV=2
Length = 648
Score = 70.9 bits (172), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 60/96 (62%), Gaps = 4/96 (4%)
Query: 1 FISSFNRANLKYEILPK----KNVLKEVISLIKAKYSGQSGIVYCLTRKECDSVAAALAQ 56
F +SFNR NL YE+ K ++ ++++ LI +Y GQSGI+YC ++K+ + + +L +
Sbjct: 277 FTASFNRPNLFYEVRQKPSSAEDFTEDIVKLINGRYKGQSGIIYCFSQKDSEQITISLQK 336
Query: 57 ERINAISYHAGLADKLRNEVQMKWISNKVHVGHWTV 92
I+A +YHA + + + +V +W +N++ V TV
Sbjct: 337 LGIHAGTYHANMEPEDKTKVHTQWSANELQVVVATV 372
>sp|Q09811|HUS2_SCHPO ATP-dependent DNA helicase hus2/rqh1 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=rqh1 PE=1 SV=1
Length = 1328
Score = 69.7 bits (169), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 37/81 (45%), Positives = 49/81 (60%), Gaps = 1/81 (1%)
Query: 3 SSFNRANLKYEILPKKNVLKEVISLIKAKYSGQSGIVYCLTRKECDSVAAALAQE-RINA 61
SSFNR NL YEI PKK++ E+ I + +SGI+YCL+R C+ VAA L + + A
Sbjct: 711 SSFNRPNLFYEIKPKKDLYTELYRFISNGHLHESGIIYCLSRTSCEQVAAKLRNDYGLKA 770
Query: 62 ISYHAGLADKLRNEVQMKWIS 82
YHAGL R +Q +W S
Sbjct: 771 WHYHAGLEKVERQRIQNEWQS 791
>sp|P35187|SGS1_YEAST ATP-dependent helicase SGS1 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=SGS1 PE=1 SV=1
Length = 1447
Score = 69.7 bits (169), Expect = 1e-11, Method: Composition-based stats.
Identities = 31/85 (36%), Positives = 51/85 (60%), Gaps = 1/85 (1%)
Query: 4 SFNRANLKYEILPK-KNVLKEVISLIKAKYSGQSGIVYCLTRKECDSVAAALAQERINAI 62
SFNR NL YE+ K KN + E+ +K+++ Q+GI+YC ++K C+ +A + + I
Sbjct: 869 SFNRTNLYYEVNKKTKNTIFEICDAVKSRFKNQTGIIYCHSKKSCEQTSAQMQRNGIKCA 928
Query: 63 SYHAGLADKLRNEVQMKWISNKVHV 87
YHAG+ R VQ W ++++ V
Sbjct: 929 YYHAGMEPDERLSVQKAWQADEIQV 953
>sp|Q6AYJ1|RECQ1_RAT ATP-dependent DNA helicase Q1 OS=Rattus norvegicus GN=Recql PE=2
SV=1
Length = 621
Score = 68.9 bits (167), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 59/96 (61%), Gaps = 4/96 (4%)
Query: 1 FISSFNRANLKYEILPK----KNVLKEVISLIKAKYSGQSGIVYCLTRKECDSVAAALAQ 56
F +SFNR NL YE+ K ++ ++ + +LI +Y G+SGI+YC ++K+ + V +L +
Sbjct: 277 FTASFNRPNLYYEVRQKPSSAEDFIENIANLINGRYKGKSGIIYCFSQKDSEQVTISLQK 336
Query: 57 ERINAISYHAGLADKLRNEVQMKWISNKVHVGHWTV 92
+ A +YHA + + R +V +W +N++ V TV
Sbjct: 337 LGVRAGTYHANMEPEDRTKVHTQWSANELQVVVATV 372
>sp|P15043|RECQ_ECOLI ATP-dependent DNA helicase RecQ OS=Escherichia coli (strain K12)
GN=recQ PE=1 SV=5
Length = 609
Score = 64.3 bits (155), Expect = 5e-10, Method: Composition-based stats.
Identities = 30/86 (34%), Positives = 56/86 (65%), Gaps = 1/86 (1%)
Query: 2 ISSFNRANLKYEILPKKNVLKEVISLIKAKYSGQSGIVYCLTRKECDSVAAALAQERINA 61
ISSF+R N++Y ++ K L +++ ++ + G+SGI+YC +R + + AA L + I+A
Sbjct: 205 ISSFDRPNIRYMLMEKFKPLDQLMRYVQEQ-RGKSGIIYCNSRAKVEDTAARLQSKGISA 263
Query: 62 ISYHAGLADKLRNEVQMKWISNKVHV 87
+YHAGL + +R +VQ K+ + + +
Sbjct: 264 AAYHAGLENNVRADVQEKFQRDDLQI 289
>sp|P40724|RECQ_SALTY ATP-dependent DNA helicase RecQ OS=Salmonella typhimurium (strain
LT2 / SGSC1412 / ATCC 700720) GN=recQ PE=3 SV=3
Length = 609
Score = 63.2 bits (152), Expect = 9e-10, Method: Composition-based stats.
Identities = 30/86 (34%), Positives = 55/86 (63%), Gaps = 1/86 (1%)
Query: 2 ISSFNRANLKYEILPKKNVLKEVISLIKAKYSGQSGIVYCLTRKECDSVAAALAQERINA 61
ISSF+R N++Y ++ K L +++ ++ + G+SGI+YC +R + + AA L I+A
Sbjct: 205 ISSFDRPNIRYMLMEKFKPLDQLMRYVQEQ-RGKSGIIYCNSRAKVEDTAARLQSRGISA 263
Query: 62 ISYHAGLADKLRNEVQMKWISNKVHV 87
+YHAGL + +R +VQ K+ + + +
Sbjct: 264 AAYHAGLENAIRVDVQEKFQRDDLQI 289
>sp|Q8L840|RQL4A_ARATH ATP-dependent DNA helicase Q-like 4A OS=Arabidopsis thaliana
GN=RECQL4A PE=2 SV=1
Length = 1188
Score = 62.8 bits (151), Expect = 1e-09, Method: Composition-based stats.
Identities = 29/88 (32%), Positives = 51/88 (57%), Gaps = 1/88 (1%)
Query: 1 FISSFNRANLKYEILPK-KNVLKEVISLIKAKYSGQSGIVYCLTRKECDSVAAALAQERI 59
F SFNR NL Y ++PK K L+++ IK + + GI+YCL+R +C+ V+ L +
Sbjct: 639 FRQSFNRPNLWYSVVPKTKKCLEDIDKFIKENHFDECGIIYCLSRMDCEKVSERLQEFGH 698
Query: 60 NAISYHAGLADKLRNEVQMKWISNKVHV 87
A YH + + R +Q +W +++++
Sbjct: 699 KAAFYHGSMEPEQRAFIQTQWSKDEINI 726
>sp|Q9FT70|RQL4B_ARATH ATP-dependent DNA helicase Q-like 4B OS=Arabidopsis thaliana
GN=RECQL4B PE=2 SV=1
Length = 1150
Score = 60.5 bits (145), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 51/93 (54%), Gaps = 1/93 (1%)
Query: 1 FISSFNRANLKYEILPKKN-VLKEVISLIKAKYSGQSGIVYCLTRKECDSVAAALAQERI 59
F SFNR NL Y ++PK N L+++ I+ + + GI+YCL+R +C+ V AL
Sbjct: 655 FRQSFNRPNLWYSVVPKTNKCLEDIDKFIRENHFDECGIIYCLSRMDCEKVTEALRVFGH 714
Query: 60 NAISYHAGLADKLRNEVQMKWISNKVHVGHWTV 92
A YH + R VQ +W +++++ TV
Sbjct: 715 KAAFYHGSMDPGKRAFVQKQWSKDEINIICATV 747
>sp|P71359|RECQ_HAEIN ATP-dependent DNA helicase RecQ OS=Haemophilus influenzae (strain
ATCC 51907 / DSM 11121 / KW20 / Rd) GN=recQ PE=3 SV=1
Length = 619
Score = 60.1 bits (144), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 53/87 (60%), Gaps = 1/87 (1%)
Query: 1 FISSFNRANLKYEILPKKNVLKEVISLIKAKYSGQSGIVYCLTRKECDSVAAALAQERIN 60
+I SF+R N++Y + K ++++ + A+ G+SGI+YC +R + + +A +L + ++
Sbjct: 207 YIGSFDRPNIRYTLEEKYKPMEQLTRFVLAQ-KGKSGIIYCNSRNKVERIAESLRNKGVS 265
Query: 61 AISYHAGLADKLRNEVQMKWISNKVHV 87
A +YHAG+ +R VQ + + V V
Sbjct: 266 AAAYHAGMETAIRERVQQDFQRDNVQV 292
>sp|Q5UPX0|YR290_MIMIV Putative ATP-dependent RNA helicase R290 OS=Acanthamoeba polyphaga
mimivirus GN=MIMI_R290 PE=3 SV=1
Length = 548
Score = 59.3 bits (142), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 32/91 (35%), Positives = 54/91 (59%), Gaps = 2/91 (2%)
Query: 3 SSFNRANLKYEILPK-KNVLKEVISLIKAKYSGQSGIVYCLTRKECDSVAAALAQERINA 61
+SF+R NL E+ K KN +++ +I KY QS I+YCLT+KE +A L ++
Sbjct: 210 ASFDRPNLYLEVRTKSKNPANDIVPIIN-KYPNQSVIIYCLTKKETQKIADILTVHKVVC 268
Query: 62 ISYHAGLADKLRNEVQMKWISNKVHVGHWTV 92
YHAGL+++ + + +I+NK+ + T+
Sbjct: 269 GIYHAGLSNEHKTKTHTNFINNKIKIVVATI 299
>sp|Q9CL21|RECQ_PASMU ATP-dependent DNA helicase RecQ OS=Pasteurella multocida (strain
Pm70) GN=recQ PE=3 SV=1
Length = 632
Score = 58.9 bits (141), Expect = 2e-08, Method: Composition-based stats.
Identities = 27/87 (31%), Positives = 53/87 (60%), Gaps = 1/87 (1%)
Query: 1 FISSFNRANLKYEILPKKNVLKEVISLIKAKYSGQSGIVYCLTRKECDSVAAALAQERIN 60
+I SF+R N++Y ++ K ++++ + + G+SGI+YC +R + + +A +L + ++
Sbjct: 217 YIGSFDRPNIRYTLVEKFKPMEQLCRFVLGQ-KGKSGIIYCNSRSKVERIAESLRNKGVS 275
Query: 61 AISYHAGLADKLRNEVQMKWISNKVHV 87
A +YHAGL R +VQ + + V V
Sbjct: 276 AQAYHAGLETSQREQVQRAFQRDNVQV 302
>sp|Q9FT72|RQL3_ARATH ATP-dependent DNA helicase Q-like 3 OS=Arabidopsis thaliana
GN=RECQL3 PE=1 SV=1
Length = 713
Score = 57.4 bits (137), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 53/94 (56%), Gaps = 4/94 (4%)
Query: 3 SSFNRANLKYEILPKK---NVLKEVISLIKAKYSGQSGIVYCLTRKECDSVAAALAQERI 59
SSFNR N+ YE+ K N ++ +L+K+ I+YCL R CD ++ L+ I
Sbjct: 223 SSFNRPNIFYEVRYKDLLDNAYTDLGNLLKS-CGNICAIIYCLERTTCDDLSVHLSSIGI 281
Query: 60 NAISYHAGLADKLRNEVQMKWISNKVHVGHWTVV 93
++ +YHAGL K+R+ V W+S+K + TV
Sbjct: 282 SSAAYHAGLNSKMRSTVLDDWLSSKKQIIVATVA 315
Score = 35.0 bits (79), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 25/38 (65%)
Query: 97 CDSVAAALAQERINAISYHAGLADKLRNEVQMKWISNK 134
CD ++ L+ I++ +YHAGL K+R+ V W+S+K
Sbjct: 269 CDDLSVHLSSIGISSAAYHAGLNSKMRSTVLDDWLSSK 306
>sp|O34748|RECQ_BACSU Probable ATP-dependent DNA helicase RecQ OS=Bacillus subtilis
(strain 168) GN=recQ PE=3 SV=1
Length = 591
Score = 53.9 bits (128), Expect = 5e-07, Method: Composition-based stats.
Identities = 26/85 (30%), Positives = 51/85 (60%), Gaps = 1/85 (1%)
Query: 3 SSFNRANLKYEILPKKNVLKEVISLIKAKYSGQSGIVYCLTRKECDSVAAALAQERINAI 62
+ F+R NL ++++ +N + + ++ ++GIVY TRKE D + L + ++ A
Sbjct: 200 TGFSRENLTFKVVKGENKDRFIDEYVQNNRH-EAGIVYTATRKEADRIYERLKRNQVRAG 258
Query: 63 SYHAGLADKLRNEVQMKWISNKVHV 87
YH GLAD +R E Q +++++++ V
Sbjct: 259 RYHGGLADDVRKEQQERFLNDELQV 283
Score = 37.4 bits (85), Expect = 0.052, Method: Composition-based stats.
Identities = 15/48 (31%), Positives = 29/48 (60%)
Query: 90 WTVVSKECDSVAAALAQERINAISYHAGLADKLRNEVQMKWISNKVHL 137
+T KE D + L + ++ A YH GLAD +R E Q +++++++ +
Sbjct: 236 YTATRKEADRIYERLKRNQVRAGRYHGGLADDVRKEQQERFLNDELQV 283
>sp|O94762|RECQ5_HUMAN ATP-dependent DNA helicase Q5 OS=Homo sapiens GN=RECQL5 PE=1 SV=2
Length = 991
Score = 51.2 bits (121), Expect = 4e-06, Method: Composition-based stats.
Identities = 24/51 (47%), Positives = 31/51 (60%)
Query: 37 GIVYCLTRKECDSVAAALAQERINAISYHAGLADKLRNEVQMKWISNKVHV 87
GIVYC TR+ C+ +A L+ +NA +YHAGL R VQ W+ KV V
Sbjct: 262 GIVYCRTREACEQLAIELSCRGVNAKAYHAGLKASERTLVQNDWMEEKVPV 312
Score = 35.4 bits (80), Expect = 0.24, Method: Composition-based stats.
Identities = 16/39 (41%), Positives = 22/39 (56%)
Query: 97 CDSVAAALAQERINAISYHAGLADKLRNEVQMKWISNKV 135
C+ +A L+ +NA +YHAGL R VQ W+ KV
Sbjct: 272 CEQLAIELSCRGVNAKAYHAGLKASERTLVQNDWMEEKV 310
>sp|O93530|WRN_XENLA Werner syndrome ATP-dependent helicase homolog OS=Xenopus laevis
GN=wrn PE=2 SV=1
Length = 1436
Score = 47.4 bits (111), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 50/98 (51%), Gaps = 7/98 (7%)
Query: 3 SSFNRANLKYEILPKK-NVLKEVISLIKAKYSGQ------SGIVYCLTRKECDSVAAALA 55
+SF+R NL ++ K N+ ++ + K G + IVYC TRK + V A L
Sbjct: 669 TSFDRPNLYLDVARKTTNISIDLRQFLIKKQQGSGWEFEGATIVYCPTRKTSEQVTAELI 728
Query: 56 QERINAISYHAGLADKLRNEVQMKWISNKVHVGHWTVV 93
+ I +YHAG+ K R EV +++ +++H TV
Sbjct: 729 KLGIACGTYHAGMGIKQRREVHHRFMRDEIHCVVATVA 766
>sp|Q0WVW7|RQL5_ARATH ATP-dependent DNA helicase Q-like 5 OS=Arabidopsis thaliana
GN=RECQL5 PE=2 SV=2
Length = 911
Score = 43.5 bits (101), Expect = 8e-04, Method: Composition-based stats.
Identities = 28/84 (33%), Positives = 45/84 (53%), Gaps = 3/84 (3%)
Query: 7 RANLKYEI-LPKKNVLKEVISLIKAKYSGQ--SGIVYCLTRKECDSVAAALAQERINAIS 63
R N + + L N +K+++ L+++ + S IVYC + E D ++ L INA
Sbjct: 456 RDNFELSVSLSGANRMKDLLILMESPPYKEIRSIIVYCKFQYETDMISKYLRDNNINAKG 515
Query: 64 YHAGLADKLRNEVQMKWISNKVHV 87
YH+GL K R +Q + SNK+ V
Sbjct: 516 YHSGLPAKDRVRIQESFCSNKIRV 539
Score = 33.9 bits (76), Expect = 0.66, Method: Composition-based stats.
Identities = 16/42 (38%), Positives = 23/42 (54%)
Query: 96 ECDSVAAALAQERINAISYHAGLADKLRNEVQMKWISNKVHL 137
E D ++ L INA YH+GL K R +Q + SNK+ +
Sbjct: 498 ETDMISKYLRDNNINAKGYHSGLPAKDRVRIQESFCSNKIRV 539
>sp|Q19546|WRN_CAEEL Probable Werner syndrome ATP-dependent helicase homolog 1
OS=Caenorhabditis elegans GN=wrn-1 PE=3 SV=2
Length = 1056
Score = 42.7 bits (99), Expect = 0.001, Method: Composition-based stats.
Identities = 22/88 (25%), Positives = 44/88 (50%), Gaps = 5/88 (5%)
Query: 3 SSFNRANLKYEILPKKNVLKEV-----ISLIKAKYSGQSGIVYCLTRKECDSVAAALAQE 57
+SF+R NL + K++ +++ +K ++ G I+YC T++ D V L +
Sbjct: 410 TSFDRKNLYISVHSSKDMAEDLGLFMKTDEVKGRHFGGPTIIYCQTKQMVDDVNCVLRRI 469
Query: 58 RINAISYHAGLADKLRNEVQMKWISNKV 85
+ + YHAGL R + ++ +K+
Sbjct: 470 GVRSAHYHAGLTKNQREKAHTDFMRDKI 497
>sp|O09053|WRN_MOUSE Werner syndrome ATP-dependent helicase homolog OS=Mus musculus
GN=Wrn PE=1 SV=3
Length = 1401
Score = 40.8 bits (94), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 48/97 (49%), Gaps = 6/97 (6%)
Query: 3 SSFNRANLKYEILPKK-NVLKEVISLIKAKYSGQ-----SGIVYCLTRKECDSVAAALAQ 56
+ F+R NL E+ K N+L+++ + K S I+YC +RK + V A L +
Sbjct: 692 TGFDRPNLYLEVGRKTGNILQDLKPFLVRKASSAWEFEGPTIIYCPSRKMTEQVTAELGK 751
Query: 57 ERINAISYHAGLADKLRNEVQMKWISNKVHVGHWTVV 93
+ +YHAG+ R +V +++ +++ TV
Sbjct: 752 LNLACRTYHAGMKISERKDVHHRFLRDEIQCVVATVA 788
>sp|Q14191|WRN_HUMAN Werner syndrome ATP-dependent helicase OS=Homo sapiens GN=WRN PE=1
SV=2
Length = 1432
Score = 40.0 bits (92), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 50/90 (55%), Gaps = 7/90 (7%)
Query: 3 SSFNRANLKYEILPKK-NVLKEVIS-LIKA----KYSGQSGIVYCLTRKECDSVAAALAQ 56
+ F+R NL E+ K N+L+++ L+K ++ G + I+YC +RK V L +
Sbjct: 728 TGFDRPNLYLEVRRKTGNILQDLQPFLVKTSSHWEFEGPT-IIYCPSRKMTQQVTGELRK 786
Query: 57 ERINAISYHAGLADKLRNEVQMKWISNKVH 86
++ +YHAG++ R ++ +++ +++
Sbjct: 787 LNLSCGTYHAGMSFSTRKDIHHRFVRDEIQ 816
>sp|Q9DHD6|POLG_HCVJP Genome polyprotein OS=Hepatitis C virus genotype 2b (isolate
JPUT971017) PE=1 SV=3
Length = 3033
Score = 38.1 bits (87), Expect = 0.030, Method: Composition-based stats.
Identities = 15/39 (38%), Positives = 26/39 (66%)
Query: 30 AKYSGQSGIVYCLTRKECDSVAAALAQERINAISYHAGL 68
A G +++C ++K+CD +AAAL +NA++Y+ GL
Sbjct: 1387 ASIKGGRHLIFCHSKKKCDELAAALRGMGVNAVAYYRGL 1425
Score = 30.0 bits (66), Expect = 8.9, Method: Composition-based stats.
Identities = 12/24 (50%), Positives = 18/24 (75%)
Query: 95 KECDSVAAALAQERINAISYHAGL 118
K+CD +AAAL +NA++Y+ GL
Sbjct: 1402 KKCDELAAALRGMGVNAVAYYRGL 1425
>sp|P26661|POLG_HCVJ8 Genome polyprotein OS=Hepatitis C virus genotype 2b (isolate HC-J8)
PE=1 SV=3
Length = 3033
Score = 37.4 bits (85), Expect = 0.058, Method: Composition-based stats.
Identities = 14/35 (40%), Positives = 25/35 (71%)
Query: 34 GQSGIVYCLTRKECDSVAAALAQERINAISYHAGL 68
G +++C ++K+CD +AAAL +NA++Y+ GL
Sbjct: 1391 GGRHLIFCHSKKKCDELAAALRGMGVNAVAYYRGL 1425
Score = 30.0 bits (66), Expect = 8.9, Method: Composition-based stats.
Identities = 12/24 (50%), Positives = 18/24 (75%)
Query: 95 KECDSVAAALAQERINAISYHAGL 118
K+CD +AAAL +NA++Y+ GL
Sbjct: 1402 KKCDELAAALRGMGVNAVAYYRGL 1425
>sp|Q9QAX1|POLG_HCVVA Genome polyprotein OS=Hepatitis C virus genotype 2k (isolate VAT96)
PE=1 SV=3
Length = 3033
Score = 37.4 bits (85), Expect = 0.061, Method: Composition-based stats.
Identities = 14/39 (35%), Positives = 27/39 (69%)
Query: 30 AKYSGQSGIVYCLTRKECDSVAAALAQERINAISYHAGL 68
++ G +++C ++K+CD +AAAL +NA++Y+ GL
Sbjct: 1387 SQIKGGRHLIFCHSKKKCDELAAALRGMGLNAVAYYRGL 1425
>sp|P73421|RECQ_SYNY3 ATP-dependent DNA helicase RecQ OS=Synechocystis sp. (strain PCC
6803 / Kazusa) GN=recQ PE=3 SV=1
Length = 478
Score = 37.0 bits (84), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 17/77 (22%), Positives = 42/77 (54%)
Query: 9 NLKYEILPKKNVLKEVISLIKAKYSGQSGIVYCLTRKECDSVAAALAQERINAISYHAGL 68
+LK +++ + ++ + K+ +SG++Y TR ++A L + ++ +YH GL
Sbjct: 214 HLKVKMVLSEYCRRQQLRRFLLKHLQESGLIYVRTRTMAINLAQWLQERGFDSEAYHGGL 273
Query: 69 ADKLRNEVQMKWISNKV 85
R +++ KW++ ++
Sbjct: 274 GPHQRRQLEQKWLTGQI 290
>sp|Q99IB8|POLG_HCVJF Genome polyprotein OS=Hepatitis C virus genotype 2a (isolate JFH-1)
PE=1 SV=3
Length = 3033
Score = 37.0 bits (84), Expect = 0.078, Method: Composition-based stats.
Identities = 14/35 (40%), Positives = 25/35 (71%)
Query: 34 GQSGIVYCLTRKECDSVAAALAQERINAISYHAGL 68
G +++C ++K+CD +AAAL +NA++Y+ GL
Sbjct: 1391 GGRHLIFCHSKKKCDELAAALRGMGLNAVAYYRGL 1425
>sp|P26660|POLG_HCVJ6 Genome polyprotein OS=Hepatitis C virus genotype 2a (isolate HC-J6)
PE=1 SV=3
Length = 3033
Score = 37.0 bits (84), Expect = 0.078, Method: Composition-based stats.
Identities = 14/35 (40%), Positives = 25/35 (71%)
Query: 34 GQSGIVYCLTRKECDSVAAALAQERINAISYHAGL 68
G +++C ++K+CD +AAAL +NA++Y+ GL
Sbjct: 1391 GGRHLIFCHSKKKCDELAAALRGMGLNAVAYYRGL 1425
>sp|O91936|POLG_HCVSA Genome polyprotein OS=Hepatitis C virus genotype 5a (isolate SA13)
PE=1 SV=3
Length = 3014
Score = 36.6 bits (83), Expect = 0.084, Method: Composition-based stats.
Identities = 15/44 (34%), Positives = 29/44 (65%), Gaps = 4/44 (9%)
Query: 25 ISLIKAKYSGQSGIVYCLTRKECDSVAAALAQERINAISYHAGL 68
++LIK G +++C ++K+CD +A L + +NA++Y+ GL
Sbjct: 1383 LALIK----GGRHLIFCHSKKKCDELAKQLTSQGVNAVAYYRGL 1422
>sp|Q00269|POLG_HCVJT Genome polyprotein OS=Hepatitis C virus genotype 1b (isolate HC-JT)
PE=1 SV=3
Length = 3010
Score = 36.6 bits (83), Expect = 0.090, Method: Composition-based stats.
Identities = 14/35 (40%), Positives = 25/35 (71%)
Query: 34 GQSGIVYCLTRKECDSVAAALAQERINAISYHAGL 68
G +++C ++K+CD +AA L+ INA++Y+ GL
Sbjct: 1387 GGRHLIFCHSKKKCDELAAKLSGLGINAVAYYRGL 1421
>sp|P26663|POLG_HCVBK Genome polyprotein OS=Hepatitis C virus genotype 1b (isolate BK) PE=1
SV=3
Length = 3010
Score = 36.6 bits (83), Expect = 0.090, Method: Composition-based stats.
Identities = 14/35 (40%), Positives = 25/35 (71%)
Query: 34 GQSGIVYCLTRKECDSVAAALAQERINAISYHAGL 68
G +++C ++K+CD +AA L+ INA++Y+ GL
Sbjct: 1387 GGRHLIFCHSKKKCDELAAKLSGLGINAVAYYRGL 1421
>sp|P27958|POLG_HCVH Genome polyprotein OS=Hepatitis C virus genotype 1a (isolate H) PE=1
SV=3
Length = 3011
Score = 36.6 bits (83), Expect = 0.099, Method: Composition-based stats.
Identities = 14/35 (40%), Positives = 24/35 (68%)
Query: 34 GQSGIVYCLTRKECDSVAAALAQERINAISYHAGL 68
G +++C ++K+CD +AA L INA++Y+ GL
Sbjct: 1387 GGRHLIFCHSKKKCDELAAKLVALGINAVAYYRGL 1421
>sp|P26664|POLG_HCV1 Genome polyprotein OS=Hepatitis C virus genotype 1a (isolate 1) PE=1
SV=3
Length = 3011
Score = 36.6 bits (83), Expect = 0.099, Method: Composition-based stats.
Identities = 14/35 (40%), Positives = 24/35 (68%)
Query: 34 GQSGIVYCLTRKECDSVAAALAQERINAISYHAGL 68
G +++C ++K+CD +AA L INA++Y+ GL
Sbjct: 1387 GGRHLIFCHSKKKCDELAAKLVALGINAVAYYRGL 1421
>sp|Q03463|POLG_HCVJ1 Genome polyprotein OS=Hepatitis C virus genotype 1b (isolate HC-J1)
PE=1 SV=1
Length = 3011
Score = 35.8 bits (81), Expect = 0.15, Method: Composition-based stats.
Identities = 13/35 (37%), Positives = 24/35 (68%)
Query: 34 GQSGIVYCLTRKECDSVAAALAQERINAISYHAGL 68
G +++C ++K+CD +AA L +NA++Y+ GL
Sbjct: 1387 GGRHLIFCHSKKKCDELAAKLVALGVNAVAYYRGL 1421
>sp|Q9WMX2|POLG_HCVCO Genome polyprotein OS=Hepatitis C virus genotype 1b (isolate Con1)
PE=1 SV=3
Length = 3010
Score = 35.8 bits (81), Expect = 0.19, Method: Composition-based stats.
Identities = 13/35 (37%), Positives = 25/35 (71%)
Query: 34 GQSGIVYCLTRKECDSVAAALAQERINAISYHAGL 68
G +++C ++K+CD +AA L+ +NA++Y+ GL
Sbjct: 1387 GGRHLIFCHSKKKCDELAAKLSGLGLNAVAYYRGL 1421
>sp|Q68749|POLG_HCVBB Genome polyprotein OS=Hepatitis C virus genotype 2c (isolate BEBE1)
PE=1 SV=3
Length = 3037
Score = 35.0 bits (79), Expect = 0.26, Method: Composition-based stats.
Identities = 13/35 (37%), Positives = 24/35 (68%)
Query: 34 GQSGIVYCLTRKECDSVAAALAQERINAISYHAGL 68
G +++C ++K+CD +A AL +NA++Y+ GL
Sbjct: 1391 GGRHLIFCHSKKKCDELAVALRGMGLNAVAYYRGL 1425
>sp|P26662|POLG_HCVJA Genome polyprotein OS=Hepatitis C virus genotype 1b (isolate
Japanese) PE=1 SV=3
Length = 3010
Score = 35.0 bits (79), Expect = 0.26, Method: Composition-based stats.
Identities = 13/35 (37%), Positives = 24/35 (68%)
Query: 34 GQSGIVYCLTRKECDSVAAALAQERINAISYHAGL 68
G +++C ++K+CD +AA L +NA++Y+ GL
Sbjct: 1387 GGRHLIFCHSKKKCDELAAKLTGLGLNAVAYYRGL 1421
>sp|O92972|POLG_HCVJ4 Genome polyprotein OS=Hepatitis C virus genotype 1b (strain HC-J4)
PE=1 SV=2
Length = 3010
Score = 35.0 bits (79), Expect = 0.26, Method: Composition-based stats.
Identities = 13/35 (37%), Positives = 24/35 (68%)
Query: 34 GQSGIVYCLTRKECDSVAAALAQERINAISYHAGL 68
G +++C ++K+CD +AA L +NA++Y+ GL
Sbjct: 1387 GGRHLIFCHSKKKCDELAAKLTGLGLNAVAYYRGL 1421
>sp|P21693|DBPA_ECOLI ATP-independent RNA helicase DbpA OS=Escherichia coli (strain K12)
GN=dbpA PE=1 SV=2
Length = 457
Score = 35.0 bits (79), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 39/71 (54%), Gaps = 4/71 (5%)
Query: 17 KKNVLKEVISLIKAKYSGQSGIVYCLTRKECDSVAAALAQERINAISYHAGLADKLRNEV 76
K +L+ ++SL + S +V+C T+K+C +V AL + +A+S H L + R++
Sbjct: 228 KIPLLQRLLSL----HQPSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQT 283
Query: 77 QMKWISNKVHV 87
+++ + V
Sbjct: 284 LVRFANGSARV 294
>sp|Q81258|POLG_HCVNZ Genome polyprotein OS=Hepatitis C virus genotype 3a (isolate NZL1)
PE=1 SV=3
Length = 3021
Score = 35.0 bits (79), Expect = 0.29, Method: Composition-based stats.
Identities = 15/44 (34%), Positives = 29/44 (65%), Gaps = 4/44 (9%)
Query: 25 ISLIKAKYSGQSGIVYCLTRKECDSVAAALAQERINAISYHAGL 68
I+L+K G +++C ++K+CD +A+ L +NA++Y+ GL
Sbjct: 1388 IALLK----GGRHLIFCHSKKKCDEIASKLRGMGLNAVAYYRGL 1427
>sp|P50729|RECS_BACSU Probable ATP-dependent DNA helicase RecS OS=Bacillus subtilis
(strain 168) GN=recS PE=3 SV=1
Length = 496
Score = 35.0 bits (79), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 45/88 (51%), Gaps = 2/88 (2%)
Query: 2 ISSFNRANLKYEILPKKNVLKEVISLIKAKYSGQS-GIVYCLTRKECDSVAAAL-AQERI 59
++S NR N+ + + +++ +I+ + Q GIVYC TRK +A + ++
Sbjct: 195 LNSVNRPNIALRVENAADTAEKIDRVIQLVENLQGPGIVYCPTRKWAKELAGEIKSKTSS 254
Query: 60 NAISYHAGLADKLRNEVQMKWISNKVHV 87
A YH GL R +Q ++I N++ V
Sbjct: 255 RADFYHGGLESGDRILIQQQFIHNQLDV 282
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.134 0.404
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 65,809,497
Number of Sequences: 539616
Number of extensions: 2370611
Number of successful extensions: 6121
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 72
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 5936
Number of HSP's gapped (non-prelim): 168
length of query: 184
length of database: 191,569,459
effective HSP length: 110
effective length of query: 74
effective length of database: 132,211,699
effective search space: 9783665726
effective search space used: 9783665726
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (26.6 bits)