Query psy437
Match_columns 184
No_of_seqs 258 out of 2103
Neff 8.7
Searched_HMMs 46136
Date Fri Aug 16 23:46:21 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy437.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/437hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0514 RecQ Superfamily II DN 100.0 4E-31 8.8E-36 227.1 10.0 132 1-178 196-329 (590)
2 KOG0351|consensus 99.9 7.3E-27 1.6E-31 210.4 11.4 132 1-177 450-583 (941)
3 PLN03137 ATP-dependent DNA hel 99.9 2.6E-24 5.7E-29 195.1 12.8 127 1-134 646-773 (1195)
4 KOG0352|consensus 99.9 1.3E-24 2.8E-29 178.5 5.6 131 1-176 207-352 (641)
5 TIGR00614 recQ_fam ATP-depende 99.9 1E-22 2.3E-27 174.6 13.9 126 2-134 193-319 (470)
6 KOG0331|consensus 99.9 3.3E-23 7.1E-28 175.8 8.8 109 19-134 324-434 (519)
7 PRK11057 ATP-dependent DNA hel 99.9 2.5E-22 5.4E-27 176.9 13.5 125 2-134 205-329 (607)
8 TIGR01389 recQ ATP-dependent D 99.9 3.4E-22 7.3E-27 175.8 14.1 126 1-134 192-317 (591)
9 KOG0353|consensus 99.9 1.6E-22 3.4E-27 164.6 8.6 122 1-129 280-405 (695)
10 KOG0328|consensus 99.9 3.5E-22 7.7E-27 156.8 9.9 117 10-134 242-359 (400)
11 COG0513 SrmB Superfamily II DN 99.9 2.7E-21 5.8E-26 167.3 10.9 107 19-133 259-365 (513)
12 KOG0333|consensus 99.9 4.4E-21 9.6E-26 160.8 11.5 110 16-133 500-609 (673)
13 KOG0330|consensus 99.8 1.5E-20 3.3E-25 152.8 9.0 115 11-133 278-392 (476)
14 COG0513 SrmB Superfamily II DN 99.8 1.9E-19 4.1E-24 155.8 15.8 134 37-174 102-371 (513)
15 KOG0331|consensus 99.8 9.8E-20 2.1E-24 154.7 12.3 165 9-173 239-438 (519)
16 PLN03137 ATP-dependent DNA hel 99.8 3.4E-19 7.3E-24 162.2 16.3 87 88-176 684-777 (1195)
17 PTZ00110 helicase; Provisional 99.8 4.7E-19 1E-23 154.5 12.7 115 13-134 355-470 (545)
18 PRK11776 ATP-dependent RNA hel 99.8 3.8E-19 8.2E-24 152.3 11.3 109 18-134 227-335 (460)
19 PRK04837 ATP-dependent RNA hel 99.8 2.1E-19 4.5E-24 152.4 9.4 108 19-134 241-348 (423)
20 KOG0332|consensus 99.8 2.6E-19 5.6E-24 145.2 9.1 115 12-134 308-429 (477)
21 PRK10590 ATP-dependent RNA hel 99.8 7.5E-19 1.6E-23 150.3 11.1 108 19-134 231-338 (456)
22 KOG0341|consensus 99.8 3.8E-19 8.3E-24 145.0 8.5 106 20-134 409-514 (610)
23 KOG0333|consensus 99.8 8.9E-19 1.9E-23 147.1 10.4 103 71-173 503-614 (673)
24 PRK04537 ATP-dependent RNA hel 99.8 1.3E-18 2.9E-23 152.3 11.6 109 18-134 242-350 (572)
25 PRK11192 ATP-dependent RNA hel 99.8 2.9E-18 6.3E-23 145.8 12.1 121 6-134 215-338 (434)
26 TIGR00614 recQ_fam ATP-depende 99.8 1.2E-17 2.7E-22 143.3 15.9 86 88-175 230-322 (470)
27 PRK11634 ATP-dependent RNA hel 99.8 3.3E-18 7.1E-23 151.1 12.5 120 6-133 216-337 (629)
28 KOG0340|consensus 99.8 2.1E-18 4.5E-23 139.1 9.9 113 12-131 230-344 (442)
29 TIGR01389 recQ ATP-dependent D 99.8 1.7E-17 3.7E-22 146.1 16.4 140 33-174 52-319 (591)
30 KOG0326|consensus 99.8 5.3E-19 1.1E-23 141.1 6.2 117 11-135 300-416 (459)
31 KOG0335|consensus 99.8 4.6E-18 1E-22 142.8 10.2 122 6-134 299-430 (482)
32 KOG0330|consensus 99.7 2.2E-17 4.8E-22 134.6 13.2 138 33-174 128-398 (476)
33 PRK01297 ATP-dependent RNA hel 99.7 1.1E-17 2.3E-22 143.9 12.1 113 14-134 316-428 (475)
34 KOG0342|consensus 99.7 4.2E-18 9.1E-23 142.0 9.1 120 6-132 302-421 (543)
35 PLN00206 DEAD-box ATP-dependen 99.7 1E-17 2.2E-22 145.4 11.8 110 18-134 350-461 (518)
36 PRK11057 ATP-dependent DNA hel 99.7 5.1E-17 1.1E-21 143.4 15.8 87 87-175 239-332 (607)
37 KOG0336|consensus 99.7 8.1E-18 1.8E-22 138.1 7.6 114 13-133 444-557 (629)
38 KOG0353|consensus 99.7 3.9E-17 8.5E-22 133.3 10.3 76 88-163 321-403 (695)
39 KOG0341|consensus 99.7 3.9E-17 8.4E-22 133.4 9.0 82 95-176 432-521 (610)
40 KOG0338|consensus 99.7 6.2E-17 1.3E-21 135.8 9.7 104 20-131 413-516 (691)
41 PRK11776 ATP-dependent RNA hel 99.7 4.8E-16 1E-20 133.1 14.9 86 86-173 244-336 (460)
42 TIGR03817 DECH_helic helicase/ 99.7 6.4E-17 1.4E-21 145.3 9.6 105 20-134 260-372 (742)
43 KOG0347|consensus 99.7 5.3E-17 1.2E-21 137.2 7.4 92 34-132 463-554 (731)
44 PTZ00424 helicase 45; Provisio 99.7 9.4E-17 2E-21 134.9 8.9 107 20-134 254-360 (401)
45 KOG0340|consensus 99.7 2.6E-16 5.7E-21 127.1 10.7 89 86-174 256-352 (442)
46 KOG0345|consensus 99.7 1.4E-16 3E-21 132.5 9.3 117 9-133 231-349 (567)
47 PRK11634 ATP-dependent RNA hel 99.7 9.3E-16 2E-20 135.6 14.8 88 86-173 247-342 (629)
48 KOG0343|consensus 99.7 5.2E-16 1.1E-20 131.4 11.8 115 10-132 290-406 (758)
49 KOG0328|consensus 99.7 3.3E-15 7.1E-20 117.8 14.8 91 85-175 267-365 (400)
50 KOG0327|consensus 99.7 3.2E-16 6.9E-21 127.5 8.6 113 12-134 244-356 (397)
51 PRK10590 ATP-dependent RNA hel 99.7 6.3E-15 1.4E-19 126.2 17.1 163 8-173 148-339 (456)
52 PTZ00110 helicase; Provisional 99.7 3.2E-15 7E-20 130.5 15.3 163 9-173 277-471 (545)
53 PRK11192 ATP-dependent RNA hel 99.6 1.2E-14 2.7E-19 123.5 16.1 138 34-173 178-339 (434)
54 KOG0334|consensus 99.6 1.8E-15 3.9E-20 135.5 10.8 118 9-133 587-705 (997)
55 PRK04837 ATP-dependent RNA hel 99.6 2.7E-15 5.9E-20 127.2 11.4 104 70-173 239-352 (423)
56 PRK13767 ATP-dependent helicas 99.6 2.1E-15 4.5E-20 137.9 11.2 95 33-134 283-383 (876)
57 KOG0344|consensus 99.6 2.8E-15 6.1E-20 127.5 11.1 125 19-151 373-505 (593)
58 KOG0336|consensus 99.6 6.1E-15 1.3E-19 121.4 12.6 166 7-174 365-563 (629)
59 PLN00206 DEAD-box ATP-dependen 99.6 5.8E-14 1.3E-18 122.0 15.6 162 8-174 269-463 (518)
60 KOG0335|consensus 99.6 1.6E-14 3.6E-19 121.5 11.5 86 86-173 339-431 (482)
61 PRK01297 ATP-dependent RNA hel 99.6 5.4E-14 1.2E-18 121.0 15.0 100 72-173 321-429 (475)
62 PRK04537 ATP-dependent RNA hel 99.6 5E-14 1.1E-18 123.6 14.5 101 71-173 242-351 (572)
63 PRK04914 ATP-dependent helicas 99.6 1.8E-14 3.8E-19 131.6 11.6 107 19-133 479-588 (956)
64 PRK09751 putative ATP-dependen 99.6 1.9E-14 4.2E-19 135.4 10.9 95 33-134 243-370 (1490)
65 KOG0338|consensus 99.6 1.1E-14 2.4E-19 122.5 7.8 160 4-176 356-526 (691)
66 PRK14701 reverse gyrase; Provi 99.5 1E-14 2.2E-19 139.0 8.1 117 3-129 297-424 (1638)
67 PRK09200 preprotein translocas 99.5 3.9E-14 8.5E-19 126.8 10.7 123 4-134 392-527 (790)
68 TIGR03817 DECH_helic helicase/ 99.5 9.9E-14 2.1E-18 124.9 13.1 100 72-173 259-373 (742)
69 TIGR01587 cas3_core CRISPR-ass 99.5 2E-13 4.4E-18 113.2 14.0 116 19-144 207-336 (358)
70 KOG4284|consensus 99.5 1.9E-14 4.1E-19 124.0 7.4 107 20-134 259-365 (980)
71 PRK12898 secA preprotein trans 99.5 6.9E-14 1.5E-18 123.0 11.0 123 4-134 437-572 (656)
72 TIGR00631 uvrb excinuclease AB 99.5 1.6E-13 3.5E-18 121.7 12.8 111 16-133 423-539 (655)
73 KOG0339|consensus 99.5 5E-14 1.1E-18 118.6 8.8 108 19-133 453-560 (731)
74 KOG0339|consensus 99.5 1.5E-13 3.3E-18 115.7 11.7 134 34-173 296-562 (731)
75 cd00079 HELICc Helicase superf 99.5 4.8E-13 1E-17 94.8 11.7 115 10-131 2-118 (131)
76 PRK05298 excinuclease ABC subu 99.5 4.7E-13 1E-17 119.0 13.6 114 14-134 425-544 (652)
77 KOG0350|consensus 99.5 1.1E-13 2.4E-18 116.2 8.8 106 20-133 416-525 (620)
78 KOG0349|consensus 99.5 4.6E-14 9.9E-19 117.1 6.5 100 27-134 499-601 (725)
79 PRK09401 reverse gyrase; Revie 99.5 1.3E-13 2.8E-18 128.6 8.7 114 8-131 304-427 (1176)
80 KOG0342|consensus 99.5 3E-13 6.5E-18 113.3 9.8 76 95-172 341-423 (543)
81 PRK10689 transcription-repair 99.5 7.5E-13 1.6E-17 123.4 12.9 91 33-134 808-905 (1147)
82 PRK10917 ATP-dependent DNA hel 99.5 2.9E-12 6.3E-17 114.6 16.2 140 33-174 309-577 (681)
83 KOG0326|consensus 99.5 1.1E-13 2.5E-18 110.8 6.3 109 62-172 298-415 (459)
84 TIGR00580 mfd transcription-re 99.4 2.6E-12 5.5E-17 117.7 15.5 139 33-173 499-757 (926)
85 PTZ00424 helicase 45; Provisio 99.4 4.1E-13 9E-18 112.8 9.4 89 84-174 267-362 (401)
86 COG1201 Lhr Lhr-like helicases 99.4 8.8E-13 1.9E-17 118.1 11.1 105 20-134 242-347 (814)
87 KOG0348|consensus 99.4 1.2E-12 2.7E-17 110.8 10.5 116 10-132 398-538 (708)
88 PRK11664 ATP-dependent RNA hel 99.4 9.1E-13 2E-17 119.4 10.4 96 33-135 211-327 (812)
89 TIGR03714 secA2 accessory Sec 99.4 1.4E-12 3E-17 116.2 11.3 121 4-134 388-523 (762)
90 TIGR00643 recG ATP-dependent D 99.4 7.7E-12 1.7E-16 111.1 15.9 140 33-174 283-554 (630)
91 KOG0346|consensus 99.4 7.4E-13 1.6E-17 109.9 8.4 84 11-94 245-328 (569)
92 TIGR01970 DEAH_box_HrpB ATP-de 99.4 2E-12 4.3E-17 117.2 11.6 96 33-135 208-324 (819)
93 TIGR01054 rgy reverse gyrase. 99.4 1.3E-12 2.9E-17 122.0 10.7 92 20-120 314-409 (1171)
94 PRK10689 transcription-repair 99.4 3.4E-12 7.3E-17 119.1 12.6 135 33-173 648-906 (1147)
95 PRK13767 ATP-dependent helicas 99.4 7.5E-12 1.6E-16 114.7 14.7 148 24-173 196-384 (876)
96 TIGR00580 mfd transcription-re 99.4 5.3E-12 1.1E-16 115.6 13.4 95 33-134 659-756 (926)
97 TIGR00963 secA preprotein tran 99.4 2.6E-12 5.7E-17 114.0 10.9 122 4-134 369-503 (745)
98 PRK02362 ski2-like helicase; P 99.4 3E-12 6.4E-17 115.6 11.0 95 33-134 242-381 (737)
99 PHA02653 RNA helicase NPH-II; 99.4 2.8E-12 6.1E-17 113.9 10.2 92 34-134 395-501 (675)
100 COG1111 MPH1 ERCC4-like helica 99.4 6.4E-12 1.4E-16 106.0 10.9 107 20-133 349-467 (542)
101 PRK10917 ATP-dependent DNA hel 99.4 9.8E-12 2.1E-16 111.3 12.6 121 6-134 443-575 (681)
102 PRK13766 Hef nuclease; Provisi 99.4 7E-12 1.5E-16 113.7 11.6 109 19-134 347-466 (773)
103 TIGR02621 cas3_GSU0051 CRISPR- 99.3 9.8E-12 2.1E-16 111.9 11.9 90 33-134 271-376 (844)
104 KOG0334|consensus 99.3 1.7E-11 3.6E-16 110.4 11.9 137 33-173 437-710 (997)
105 KOG0327|consensus 99.3 1.4E-11 3E-16 100.7 10.4 143 34-178 200-365 (397)
106 PF00271 Helicase_C: Helicase 99.3 2E-12 4.4E-17 84.3 4.3 75 52-133 1-75 (78)
107 TIGR00643 recG ATP-dependent D 99.3 2.6E-11 5.7E-16 107.7 12.0 120 7-134 421-552 (630)
108 PHA02558 uvsW UvsW helicase; P 99.3 2.1E-11 4.5E-16 105.7 10.7 94 33-133 343-437 (501)
109 KOG0345|consensus 99.3 6.4E-11 1.4E-15 99.1 12.4 135 36-173 81-354 (567)
110 TIGR03158 cas3_cyano CRISPR-as 99.3 5.5E-11 1.2E-15 99.0 12.1 85 33-133 271-357 (357)
111 PRK00254 ski2-like helicase; P 99.3 3.3E-11 7.2E-16 108.6 11.0 95 33-134 237-372 (720)
112 PRK12906 secA preprotein trans 99.3 1.7E-11 3.8E-16 109.6 8.8 122 4-133 404-538 (796)
113 TIGR00631 uvrb excinuclease AB 99.3 2.7E-11 5.8E-16 107.7 9.8 96 76-173 434-541 (655)
114 KOG0337|consensus 99.3 2.2E-12 4.7E-17 106.6 2.5 109 15-130 242-350 (529)
115 PRK12900 secA preprotein trans 99.3 2.3E-11 4.9E-16 110.2 9.1 122 4-133 562-696 (1025)
116 PRK09751 putative ATP-dependen 99.3 1.5E-10 3.2E-15 109.7 14.7 162 9-173 124-371 (1490)
117 PRK05298 excinuclease ABC subu 99.2 3.6E-11 7.8E-16 107.1 9.8 96 76-173 438-545 (652)
118 KOG4284|consensus 99.2 5.6E-11 1.2E-15 102.9 10.5 75 96-172 284-365 (980)
119 PRK04914 ATP-dependent helicas 99.2 4.6E-11 1E-15 109.5 9.7 101 73-173 480-593 (956)
120 PHA02653 RNA helicase NPH-II; 99.2 4.3E-10 9.2E-15 100.2 14.5 85 85-173 396-502 (675)
121 KOG0344|consensus 99.2 3E-10 6.5E-15 97.2 12.8 97 77-173 379-485 (593)
122 COG0514 RecQ Superfamily II DN 99.2 6.6E-10 1.4E-14 96.7 14.1 107 34-140 57-286 (590)
123 KOG0354|consensus 99.2 1.9E-10 4.1E-15 101.6 10.2 106 19-131 395-514 (746)
124 PRK01172 ski2-like helicase; P 99.2 2.7E-10 5.9E-15 102.0 11.2 95 33-134 235-362 (674)
125 PRK02362 ski2-like helicase; P 99.2 3.7E-10 8.1E-15 102.1 12.2 152 22-175 159-384 (737)
126 PRK11664 ATP-dependent RNA hel 99.1 8.5E-10 1.8E-14 100.3 13.9 138 33-173 148-327 (812)
127 TIGR01970 DEAH_box_HrpB ATP-de 99.1 1.1E-09 2.5E-14 99.4 14.1 138 33-173 145-324 (819)
128 PF00271 Helicase_C: Helicase 99.1 9.3E-11 2E-15 76.3 5.2 69 103-173 2-77 (78)
129 TIGR00603 rad25 DNA repair hel 99.1 5.9E-10 1.3E-14 99.5 10.1 102 19-132 480-584 (732)
130 PRK11131 ATP-dependent RNA hel 99.1 4.5E-10 9.8E-15 105.0 9.7 94 33-135 285-399 (1294)
131 PRK12898 secA preprotein trans 99.1 6.3E-10 1.4E-14 98.2 9.5 86 84-173 473-573 (656)
132 cd00079 HELICc Helicase superf 99.1 1.5E-09 3.3E-14 76.7 9.8 89 84-174 28-123 (131)
133 KOG0352|consensus 99.1 5.8E-10 1.2E-14 92.8 8.4 108 33-140 60-311 (641)
134 TIGR01587 cas3_core CRISPR-ass 99.1 1E-08 2.2E-13 85.2 15.5 86 83-173 221-319 (358)
135 COG1202 Superfamily II helicas 99.0 9.5E-10 2.1E-14 94.4 8.0 85 18-108 417-508 (830)
136 smart00490 HELICc helicase sup 99.0 1.6E-09 3.6E-14 70.2 7.1 78 49-133 2-79 (82)
137 KOG0346|consensus 99.0 1.3E-09 2.8E-14 90.9 8.0 73 96-168 280-394 (569)
138 PRK09200 preprotein translocas 99.0 2.1E-09 4.5E-14 96.8 9.9 89 83-173 427-531 (790)
139 PHA02558 uvsW UvsW helicase; P 99.0 4.5E-09 9.7E-14 91.3 10.6 87 85-173 345-439 (501)
140 TIGR01967 DEAH_box_HrpA ATP-de 99.0 3.7E-09 8E-14 99.2 10.4 94 33-135 278-392 (1283)
141 KOG0343|consensus 98.9 2.9E-08 6.4E-13 85.0 13.9 163 4-167 210-405 (758)
142 KOG0349|consensus 98.9 4.3E-09 9.3E-14 87.9 8.0 87 85-173 506-602 (725)
143 PRK00254 ski2-like helicase; P 98.9 3.2E-08 6.9E-13 89.4 14.3 141 33-175 168-375 (720)
144 PRK01172 ski2-like helicase; P 98.9 2.7E-08 5.8E-13 89.3 13.0 151 22-175 157-365 (674)
145 COG0556 UvrB Helicase subunit 98.9 1.3E-08 2.9E-13 86.8 9.8 122 12-139 423-552 (663)
146 KOG0350|consensus 98.9 3E-09 6.6E-14 89.9 5.8 89 85-173 430-530 (620)
147 COG1200 RecG RecG-like helicas 98.9 1.1E-07 2.3E-12 83.5 15.2 146 27-173 304-578 (677)
148 PRK09401 reverse gyrase; Revie 98.8 1.9E-08 4E-13 94.6 10.6 79 85-168 329-428 (1176)
149 PRK12904 preprotein translocas 98.8 2.4E-08 5.1E-13 90.2 10.8 96 4-107 394-495 (830)
150 PRK13766 Hef nuclease; Provisi 98.8 2.1E-08 4.6E-13 91.2 9.8 89 82-172 363-466 (773)
151 smart00490 HELICc helicase sup 98.8 1.9E-08 4.2E-13 65.1 7.0 73 99-173 2-81 (82)
152 TIGR02621 cas3_GSU0051 CRISPR- 98.8 2.3E-07 5E-12 84.1 16.0 85 83-172 271-379 (844)
153 PRK09694 helicase Cas3; Provis 98.8 6E-08 1.3E-12 88.7 12.1 90 33-132 559-659 (878)
154 PRK13104 secA preprotein trans 98.8 1.1E-08 2.3E-13 92.7 7.1 95 4-106 408-508 (896)
155 KOG0332|consensus 98.8 3.1E-08 6.7E-13 81.3 8.3 108 70-177 314-437 (477)
156 PRK11131 ATP-dependent RNA hel 98.8 7.1E-08 1.5E-12 90.6 11.7 87 83-173 285-399 (1294)
157 KOG0351|consensus 98.8 6.4E-08 1.4E-12 88.7 11.0 107 34-140 304-541 (941)
158 COG1061 SSL2 DNA or RNA helica 98.7 1E-07 2.2E-12 81.6 11.1 104 20-131 269-372 (442)
159 COG1201 Lhr Lhr-like helicases 98.7 3.5E-07 7.7E-12 82.6 14.3 163 9-173 149-348 (814)
160 COG1202 Superfamily II helicas 98.7 1.8E-08 3.9E-13 86.8 5.4 152 20-175 358-540 (830)
161 PRK05580 primosome assembly pr 98.7 1.7E-06 3.6E-11 77.8 16.5 76 19-94 174-251 (679)
162 TIGR00595 priA primosomal prot 98.6 1E-06 2.3E-11 76.6 14.5 76 19-94 9-86 (505)
163 KOG4150|consensus 98.6 2.1E-07 4.6E-12 80.3 9.2 105 33-144 524-641 (1034)
164 KOG0348|consensus 98.6 1.4E-07 3E-12 80.7 8.0 104 70-173 405-544 (708)
165 PRK12906 secA preprotein trans 98.6 1E-07 2.2E-12 85.8 7.6 87 83-173 439-540 (796)
166 COG1111 MPH1 ERCC4-like helica 98.6 2.4E-07 5.2E-12 78.7 9.3 110 61-173 343-469 (542)
167 PRK13107 preprotein translocas 98.6 2E-07 4.2E-12 84.6 8.9 95 4-106 413-513 (908)
168 TIGR03714 secA2 accessory Sec 98.6 2E-07 4.4E-12 83.7 8.9 87 84-173 424-527 (762)
169 TIGR01967 DEAH_box_HrpA ATP-de 98.6 4.4E-07 9.5E-12 85.6 11.4 136 33-173 210-392 (1283)
170 KOG0329|consensus 98.6 5.8E-07 1.3E-11 70.8 10.2 130 36-172 112-341 (387)
171 TIGR01054 rgy reverse gyrase. 98.6 2.7E-07 5.7E-12 87.0 9.8 69 85-157 327-410 (1171)
172 TIGR00963 secA preprotein tran 98.6 2.7E-07 5.9E-12 82.5 9.3 90 82-173 403-507 (745)
173 TIGR03158 cas3_cyano CRISPR-as 98.6 2.2E-06 4.9E-11 71.5 13.8 77 84-171 272-357 (357)
174 COG1197 Mfd Transcription-repa 98.5 4E-06 8.8E-11 77.6 15.6 141 32-173 641-900 (1139)
175 TIGR00603 rad25 DNA repair hel 98.5 4.7E-07 1E-11 81.2 8.4 84 83-171 495-588 (732)
176 KOG0337|consensus 98.5 2.4E-06 5.3E-11 71.3 11.2 104 70-173 244-358 (529)
177 TIGR00595 priA primosomal prot 98.5 9.3E-07 2E-11 76.9 9.3 88 47-140 271-377 (505)
178 COG1204 Superfamily II helicas 98.5 1.2E-06 2.6E-11 79.4 10.3 72 33-110 252-360 (766)
179 COG1205 Distinct helicase fami 98.4 6.6E-07 1.4E-11 82.0 7.9 95 33-134 305-408 (851)
180 PRK11448 hsdR type I restricti 98.4 2.9E-06 6.2E-11 79.8 10.3 92 33-133 697-798 (1123)
181 PRK12900 secA preprotein trans 98.2 3.5E-06 7.5E-11 77.2 7.5 89 83-173 597-701 (1025)
182 COG1205 Distinct helicase fami 98.2 2.1E-05 4.6E-10 72.3 12.6 98 75-174 297-410 (851)
183 COG1110 Reverse gyrase [DNA re 98.1 0.00011 2.4E-09 67.5 15.2 84 10-94 98-191 (1187)
184 KOG0354|consensus 98.1 1.4E-05 3E-10 71.4 9.0 100 71-173 399-517 (746)
185 PRK05580 primosome assembly pr 98.1 7.5E-06 1.6E-10 73.7 6.3 85 44-134 436-535 (679)
186 PLN03142 Probable chromatin-re 98.1 4.1E-05 9E-10 71.4 11.1 104 19-129 471-578 (1033)
187 COG4098 comFA Superfamily II D 98.1 6.1E-05 1.3E-09 61.8 10.7 131 23-166 293-428 (441)
188 COG1110 Reverse gyrase [DNA re 98.1 1.8E-05 3.9E-10 72.4 8.5 92 19-119 322-416 (1187)
189 KOG0347|consensus 98.1 2.5E-05 5.4E-10 67.4 8.8 136 37-176 266-563 (731)
190 COG1061 SSL2 DNA or RNA helica 98.1 3E-05 6.6E-10 66.5 9.4 85 84-169 283-375 (442)
191 COG1200 RecG RecG-like helicas 98.0 4E-05 8.7E-10 67.7 8.9 98 7-111 446-554 (677)
192 PRK09694 helicase Cas3; Provis 98.0 7.9E-05 1.7E-09 68.6 10.7 86 83-173 559-662 (878)
193 KOG0950|consensus 97.9 1.7E-05 3.7E-10 71.9 6.0 117 34-156 460-626 (1008)
194 COG1197 Mfd Transcription-repa 97.9 8.8E-05 1.9E-09 69.0 10.3 103 5-116 775-881 (1139)
195 KOG0948|consensus 97.8 6.6E-05 1.4E-09 66.9 7.1 115 23-178 373-529 (1041)
196 PLN03142 Probable chromatin-re 97.6 0.00025 5.5E-09 66.3 7.8 98 76-173 479-587 (1033)
197 KOG0329|consensus 97.6 1.5E-05 3.2E-10 63.0 -0.2 40 88-134 302-341 (387)
198 COG0556 UvrB Helicase subunit 97.5 0.00062 1.3E-08 58.9 9.0 86 85-172 447-544 (663)
199 KOG0947|consensus 97.5 0.00036 7.8E-09 63.8 7.8 81 22-109 556-675 (1248)
200 KOG0951|consensus 97.5 0.00087 1.9E-08 63.0 10.3 99 28-133 540-685 (1674)
201 PRK14701 reverse gyrase; Provi 97.4 0.0029 6.4E-08 62.0 13.0 101 73-178 319-448 (1638)
202 TIGR01407 dinG_rel DnaQ family 97.3 0.0015 3.2E-08 60.6 8.7 79 33-120 673-756 (850)
203 KOG0952|consensus 97.2 0.00088 1.9E-08 61.9 6.2 80 21-109 339-441 (1230)
204 PRK12903 secA preprotein trans 97.2 0.0059 1.3E-07 56.0 11.2 129 4-141 390-538 (925)
205 PRK12904 preprotein translocas 97.0 0.0054 1.2E-07 56.2 9.9 87 83-173 429-560 (830)
206 PRK12326 preprotein translocas 97.0 0.0094 2E-07 53.8 10.7 86 4-92 391-483 (764)
207 PRK11448 hsdR type I restricti 97.0 0.0024 5.2E-08 60.6 7.4 83 84-168 698-797 (1123)
208 COG1203 CRISPR-associated heli 96.9 0.0026 5.7E-08 58.0 6.6 87 33-129 439-529 (733)
209 PRK13107 preprotein translocas 96.8 0.0061 1.3E-07 56.1 8.2 56 83-140 448-503 (908)
210 PRK14873 primosome assembly pr 96.7 0.011 2.4E-07 53.3 9.4 77 18-94 171-250 (665)
211 COG1198 PriA Primosomal protei 96.7 0.0066 1.4E-07 55.0 7.8 87 7-94 218-306 (730)
212 PF06862 DUF1253: Protein of u 96.7 0.033 7.1E-07 47.8 11.2 89 33-128 299-389 (442)
213 COG1643 HrpA HrpA-like helicas 96.6 0.0056 1.2E-07 56.3 6.7 83 33-122 258-344 (845)
214 PRK13104 secA preprotein trans 96.4 0.0093 2E-07 55.0 6.9 56 83-140 443-498 (896)
215 PRK13103 secA preprotein trans 96.3 0.028 6.1E-07 52.0 9.4 93 4-110 413-512 (913)
216 PF13307 Helicase_C_2: Helicas 96.3 0.0053 1.1E-07 45.7 3.7 85 25-119 2-91 (167)
217 KOG0922|consensus 96.2 0.017 3.8E-07 51.2 7.1 79 33-118 257-343 (674)
218 KOG0953|consensus 96.0 0.017 3.8E-07 50.4 5.8 68 23-92 347-417 (700)
219 COG1204 Superfamily II helicas 95.9 0.2 4.4E-06 46.1 12.5 140 36-177 182-397 (766)
220 COG4581 Superfamily II RNA hel 95.8 0.037 8.1E-07 51.9 7.7 71 23-94 369-480 (1041)
221 CHL00122 secA preprotein trans 95.8 0.075 1.6E-06 49.0 9.4 100 4-117 388-495 (870)
222 PRK12899 secA preprotein trans 95.8 0.099 2.1E-06 48.7 10.1 127 4-141 532-680 (970)
223 KOG1000|consensus 95.7 0.1 2.3E-06 45.2 9.4 152 20-181 473-636 (689)
224 TIGR00348 hsdR type I site-spe 95.7 0.085 1.8E-06 47.8 9.4 93 34-134 514-633 (667)
225 cd00268 DEADc DEAD-box helicas 95.6 0.16 3.4E-06 38.4 9.3 56 33-92 68-127 (203)
226 PRK12902 secA preprotein trans 95.5 0.11 2.4E-06 48.1 9.4 100 4-117 403-510 (939)
227 COG0553 HepA Superfamily II DN 95.5 0.18 3.9E-06 46.4 11.0 95 19-120 692-792 (866)
228 PRK08074 bifunctional ATP-depe 95.3 0.097 2.1E-06 49.2 8.6 80 33-119 751-834 (928)
229 KOG0391|consensus 95.3 0.26 5.7E-06 47.0 10.9 116 19-140 1260-1383(1958)
230 PRK12901 secA preprotein trans 95.2 0.12 2.6E-06 48.5 8.7 130 4-141 592-740 (1112)
231 COG1199 DinG Rad3-related DNA 95.0 0.094 2E-06 47.2 7.5 86 23-119 470-558 (654)
232 COG1643 HrpA HrpA-like helicas 95.0 0.28 6E-06 45.5 10.4 121 35-156 196-342 (845)
233 TIGR03117 cas_csf4 CRISPR-asso 94.7 0.35 7.7E-06 43.5 9.9 74 22-106 460-538 (636)
234 KOG0385|consensus 94.4 0.42 9.1E-06 43.6 9.7 108 21-139 476-594 (971)
235 KOG1002|consensus 93.7 0.21 4.6E-06 43.5 6.3 65 19-83 620-687 (791)
236 KOG0952|consensus 93.7 0.45 9.7E-06 44.8 8.7 136 40-176 281-479 (1230)
237 KOG0923|consensus 93.7 0.23 4.9E-06 44.7 6.5 124 10-140 446-605 (902)
238 PF00270 DEAD: DEAD/DEAH box h 93.2 0.85 1.8E-05 33.0 8.2 58 34-94 44-105 (169)
239 KOG0384|consensus 93.1 0.47 1E-05 45.3 7.9 108 22-140 689-807 (1373)
240 KOG0390|consensus 93.0 1.6 3.5E-05 40.2 11.1 115 20-140 579-700 (776)
241 PRK12899 secA preprotein trans 93.0 0.55 1.2E-05 44.0 8.2 67 22-94 123-193 (970)
242 KOG0924|consensus 92.9 0.16 3.5E-06 45.8 4.5 102 10-118 536-650 (1042)
243 PRK11747 dinG ATP-dependent DN 92.8 0.69 1.5E-05 42.2 8.5 75 34-119 534-615 (697)
244 PF06862 DUF1253: Protein of u 92.3 1.8 3.8E-05 37.4 9.9 91 76-167 290-391 (442)
245 cd01524 RHOD_Pyr_redox Member 92.0 0.58 1.3E-05 30.6 5.4 37 33-69 50-86 (90)
246 KOG0950|consensus 92.0 0.42 9.1E-06 44.4 6.1 90 85-176 461-599 (1008)
247 COG1198 PriA Primosomal protei 92.0 0.39 8.5E-06 43.9 5.9 109 37-153 485-615 (730)
248 KOG4150|consensus 91.8 0.41 8.9E-06 42.5 5.6 97 76-174 517-628 (1034)
249 TIGR00604 rad3 DNA repair heli 91.8 0.63 1.4E-05 42.5 7.1 82 33-120 521-615 (705)
250 PRK12903 secA preprotein trans 91.7 0.75 1.6E-05 42.8 7.4 89 83-173 425-526 (925)
251 PRK07246 bifunctional ATP-depe 91.6 1.5 3.3E-05 40.8 9.4 77 33-119 646-724 (820)
252 cd00046 DEXDc DEAD-like helica 91.4 2.9 6.3E-05 28.4 8.8 70 19-92 12-87 (144)
253 KOG0920|consensus 90.5 0.49 1.1E-05 44.2 5.1 92 22-120 401-499 (924)
254 KOG0953|consensus 90.0 1.4 3E-05 39.1 7.1 91 88-180 361-470 (700)
255 KOG0949|consensus 89.4 2.2 4.7E-05 40.4 8.2 139 33-175 849-1035(1330)
256 cd01523 RHOD_Lact_B Member of 89.0 0.64 1.4E-05 31.0 3.6 38 33-70 60-97 (100)
257 KOG0924|consensus 88.4 5.4 0.00012 36.5 9.7 119 37-155 502-651 (1042)
258 KOG0392|consensus 88.2 4.4 9.4E-05 39.3 9.3 89 20-113 1311-1418(1549)
259 KOG1123|consensus 87.6 5.2 0.00011 35.3 8.9 46 33-83 542-587 (776)
260 KOG0387|consensus 87.6 8.9 0.00019 35.5 10.6 107 19-134 530-645 (923)
261 KOG0388|consensus 87.3 4.4 9.6E-05 37.2 8.5 111 20-140 1032-1150(1185)
262 smart00450 RHOD Rhodanese Homo 87.2 0.94 2E-05 29.3 3.5 38 33-70 55-93 (100)
263 COG0653 SecA Preprotein transl 86.9 1.4 3E-05 40.8 5.4 87 3-92 392-485 (822)
264 KOG0389|consensus 86.9 12 0.00025 34.8 10.9 114 19-141 761-885 (941)
265 KOG2340|consensus 86.7 1.9 4.1E-05 38.1 5.8 85 36-127 554-640 (698)
266 KOG0949|consensus 86.5 1 2.3E-05 42.3 4.4 65 62-133 966-1031(1330)
267 cd01529 4RHOD_Repeats Member o 86.3 1.8 3.8E-05 28.6 4.5 37 33-69 55-92 (96)
268 cd01444 GlpE_ST GlpE sulfurtra 86.3 2.4 5.2E-05 27.6 5.2 46 24-69 46-92 (96)
269 KOG0384|consensus 86.1 2.3 5E-05 40.9 6.4 97 76-172 691-798 (1373)
270 cd06281 PBP1_LacI_like_5 Ligan 86.0 11 0.00025 29.2 9.7 62 49-112 46-119 (269)
271 KOG0922|consensus 85.8 16 0.00034 33.1 11.1 163 8-173 159-378 (674)
272 TIGR00348 hsdR type I site-spe 85.7 6.1 0.00013 36.0 8.9 84 84-168 514-631 (667)
273 cd01526 RHOD_ThiF Member of th 85.6 1 2.2E-05 31.4 3.1 38 33-70 71-110 (122)
274 PF02399 Herpes_ori_bp: Origin 84.5 7.5 0.00016 36.1 8.8 102 33-146 281-390 (824)
275 cd01532 4RHOD_Repeat_1 Member 83.9 2.1 4.6E-05 28.1 4.0 36 34-69 50-88 (92)
276 KOG0389|consensus 83.5 9.2 0.0002 35.4 8.8 63 27-92 441-507 (941)
277 cd01535 4RHOD_Repeat_4 Member 83.4 4.1 8.9E-05 29.4 5.6 48 22-69 37-85 (145)
278 smart00492 HELICc3 helicase su 83.2 5 0.00011 28.9 6.0 47 67-119 30-78 (141)
279 cd01521 RHOD_PspE2 Member of t 83.2 2.1 4.6E-05 29.0 3.9 38 33-70 63-102 (110)
280 COG4096 HsdR Type I site-speci 83.1 4.7 0.0001 37.4 6.8 89 34-131 426-521 (875)
281 cd01528 RHOD_2 Member of the R 83.1 1.8 3.9E-05 28.8 3.4 37 34-70 58-95 (101)
282 cd06267 PBP1_LacI_sugar_bindin 83.1 18 0.00039 27.4 9.8 15 96-110 103-117 (264)
283 cd01534 4RHOD_Repeat_3 Member 83.0 2 4.4E-05 28.2 3.6 36 34-69 56-91 (95)
284 cd06282 PBP1_GntR_like_2 Ligan 82.9 19 0.00042 27.6 9.8 60 49-110 46-117 (266)
285 PRK09189 uroporphyrinogen-III 82.9 5.4 0.00012 31.1 6.6 84 20-104 103-189 (240)
286 cd01449 TST_Repeat_2 Thiosulfa 82.2 4.3 9.3E-05 27.7 5.2 37 33-69 77-114 (118)
287 cd01518 RHOD_YceA Member of th 82.0 1.8 4E-05 28.8 3.1 37 33-69 60-97 (101)
288 PRK12901 secA preprotein trans 82.0 3.5 7.5E-05 39.3 5.7 89 83-173 627-728 (1112)
289 PF01751 Toprim: Toprim domain 81.5 6.1 0.00013 26.4 5.6 67 38-104 2-80 (100)
290 cd01527 RHOD_YgaP Member of th 81.4 2.7 5.9E-05 27.7 3.8 37 33-69 53-90 (99)
291 COG1856 Uncharacterized homolo 81.3 5.7 0.00012 31.3 5.8 65 45-110 42-112 (275)
292 cd01519 RHOD_HSP67B2 Member of 81.0 2.2 4.8E-05 28.4 3.3 36 34-69 66-102 (106)
293 cd01533 4RHOD_Repeat_2 Member 80.8 2.3 5E-05 28.8 3.4 37 34-70 66-104 (109)
294 KOG0923|consensus 80.6 5.1 0.00011 36.4 6.1 145 11-155 378-560 (902)
295 cd06309 PBP1_YtfQ_like Peripla 80.3 25 0.00054 27.3 9.6 74 46-119 17-91 (273)
296 PRK12326 preprotein translocas 80.2 5.8 0.00013 36.5 6.4 89 83-173 426-534 (764)
297 cd06324 PBP1_ABC_sugar_binding 79.7 26 0.00055 28.0 9.7 72 48-119 20-93 (305)
298 cd03418 GRX_GRXb_1_3_like Glut 79.6 12 0.00026 23.1 6.9 52 38-89 3-56 (75)
299 TIGR02417 fruct_sucro_rep D-fr 79.6 23 0.00051 28.4 9.5 72 47-118 79-150 (327)
300 PF13307 Helicase_C_2: Helicas 79.4 8.7 0.00019 28.3 6.3 75 81-159 6-95 (167)
301 cd06270 PBP1_GalS_like Ligand 79.3 27 0.00058 27.0 9.7 21 90-110 97-117 (268)
302 cd00158 RHOD Rhodanese Homolog 79.0 4.5 9.7E-05 25.6 4.2 37 33-69 49-86 (89)
303 cd01422 MGS Methylglyoxal synt 78.9 10 0.00022 26.3 6.1 45 49-94 35-80 (115)
304 PRK05234 mgsA methylglyoxal sy 78.5 21 0.00045 25.9 7.8 78 7-92 4-83 (142)
305 COG4098 comFA Superfamily II D 78.3 19 0.00041 30.4 8.3 96 80-179 301-408 (441)
306 COG0553 HepA Superfamily II DN 78.1 14 0.00031 34.1 8.6 95 79-173 704-810 (866)
307 cd01447 Polysulfide_ST Polysul 78.1 2.1 4.6E-05 28.3 2.5 37 33-69 60-97 (103)
308 cd01520 RHOD_YbbB Member of th 77.7 3.2 6.8E-05 29.1 3.3 38 33-70 85-123 (128)
309 cd03027 GRX_DEP Glutaredoxin ( 77.7 14 0.0003 22.8 7.0 54 37-90 3-57 (73)
310 cd01525 RHOD_Kc Member of the 76.4 3.9 8.4E-05 27.2 3.4 36 34-69 65-101 (105)
311 KOG0387|consensus 76.4 19 0.00041 33.5 8.4 98 75-172 537-645 (923)
312 PRK03170 dihydrodipicolinate s 76.4 39 0.00084 27.2 11.9 93 48-140 25-133 (292)
313 cd06301 PBP1_rhizopine_binding 76.3 33 0.00072 26.5 9.9 70 48-117 19-90 (272)
314 PF00532 Peripla_BP_1: Peripla 76.3 24 0.00052 28.2 8.5 22 90-111 99-120 (279)
315 smart00491 HELICc2 helicase su 75.9 6.5 0.00014 28.4 4.6 45 71-119 31-79 (142)
316 PRK11303 DNA-binding transcrip 75.8 35 0.00076 27.3 9.5 68 49-116 82-149 (328)
317 cd01391 Periplasmic_Binding_Pr 75.8 31 0.00067 25.8 10.6 62 57-118 31-92 (269)
318 PRK00162 glpE thiosulfate sulf 75.6 8.4 0.00018 25.9 4.9 47 23-69 47-94 (108)
319 cd01545 PBP1_SalR Ligand-bindi 75.6 34 0.00075 26.3 9.1 28 89-116 98-126 (270)
320 cd06312 PBP1_ABC_sugar_binding 75.0 37 0.0008 26.3 9.8 71 48-118 20-92 (271)
321 cd01537 PBP1_Repressors_Sugar_ 74.7 34 0.00074 25.8 9.4 12 97-108 106-117 (264)
322 PF02142 MGS: MGS-like domain 74.7 4.3 9.4E-05 26.9 3.2 49 48-96 20-72 (95)
323 PRK14873 primosome assembly pr 74.6 59 0.0013 29.8 11.2 79 75-153 179-265 (665)
324 cd00952 CHBPH_aldolase Trans-o 74.5 46 0.001 27.2 12.1 93 48-140 32-141 (309)
325 cd01538 PBP1_ABC_xylose_bindin 74.4 41 0.00088 26.5 10.0 72 48-119 19-91 (288)
326 cd06299 PBP1_LacI_like_13 Liga 74.2 37 0.00081 26.0 9.8 11 54-64 51-61 (265)
327 cd06292 PBP1_LacI_like_10 Liga 74.1 38 0.00083 26.1 9.1 71 48-118 19-93 (273)
328 TIGR01407 dinG_rel DnaQ family 74.0 26 0.00056 32.9 9.1 74 83-159 673-759 (850)
329 cd01448 TST_Repeat_1 Thiosulfa 73.8 4.2 9.1E-05 28.0 3.1 37 33-69 78-116 (122)
330 KOG0951|consensus 73.7 51 0.0011 32.6 10.7 106 76-183 536-700 (1674)
331 cd01542 PBP1_TreR_like Ligand- 73.7 38 0.00082 25.9 9.8 58 50-110 47-115 (259)
332 PRK05928 hemD uroporphyrinogen 72.9 12 0.00026 28.8 5.8 74 21-94 111-187 (249)
333 cd06305 PBP1_methylthioribose_ 72.7 41 0.0009 25.9 9.9 12 95-106 104-115 (273)
334 PRK10287 thiosulfate:cyanide s 72.5 7.7 0.00017 26.4 4.1 36 34-69 60-95 (104)
335 TIGR02634 xylF D-xylose ABC tr 72.1 49 0.0011 26.5 9.9 13 96-108 105-117 (302)
336 cd01522 RHOD_1 Member of the R 71.9 5.8 0.00013 27.3 3.4 38 33-70 63-101 (117)
337 cd06278 PBP1_LacI_like_2 Ligan 71.7 43 0.00093 25.6 9.7 25 94-118 100-125 (266)
338 PF00701 DHDPS: Dihydrodipicol 71.5 51 0.0011 26.4 11.4 94 47-140 24-133 (289)
339 cd06283 PBP1_RegR_EndR_KdgR_li 71.0 44 0.00096 25.5 9.9 68 50-120 47-127 (267)
340 PF02602 HEM4: Uroporphyrinoge 71.0 27 0.00059 26.7 7.4 84 54-140 87-174 (231)
341 cd00954 NAL N-Acetylneuraminic 70.9 53 0.0012 26.4 11.5 94 47-140 23-134 (288)
342 PF02602 HEM4: Uroporphyrinoge 70.1 6.6 0.00014 30.1 3.8 73 20-94 103-178 (231)
343 cd03028 GRX_PICOT_like Glutare 70.0 27 0.0006 22.7 6.7 44 34-77 7-56 (90)
344 cd06289 PBP1_MalI_like Ligand- 69.8 48 0.001 25.4 9.7 60 49-110 46-118 (268)
345 PLN02160 thiosulfate sulfurtra 69.7 7.6 0.00017 27.7 3.7 37 33-69 80-117 (136)
346 cd06274 PBP1_FruR Ligand bindi 69.6 49 0.0011 25.4 9.5 84 34-120 29-127 (264)
347 PRK05752 uroporphyrinogen-III 68.4 24 0.00052 27.8 6.7 61 34-94 129-192 (255)
348 cd01575 PBP1_GntR Ligand-bindi 68.1 52 0.0011 25.2 9.2 31 89-119 96-126 (268)
349 cd06280 PBP1_LacI_like_4 Ligan 68.0 53 0.0012 25.2 9.5 25 89-113 95-119 (263)
350 PRK11493 sseA 3-mercaptopyruva 67.9 13 0.00027 29.9 5.0 48 22-69 217-267 (281)
351 PRK04147 N-acetylneuraminate l 67.8 63 0.0014 26.1 11.2 94 47-140 26-136 (293)
352 TIGR00696 wecB_tagA_cpsF bacte 67.8 49 0.0011 24.8 12.6 69 36-129 50-120 (177)
353 TIGR02981 phageshock_pspE phag 67.6 11 0.00024 25.4 4.0 36 34-69 58-93 (101)
354 TIGR03567 FMN_reduc_SsuE FMN r 67.5 42 0.00091 24.7 7.5 17 113-129 75-91 (171)
355 cd03031 GRX_GRX_like Glutaredo 67.4 43 0.00093 24.4 7.3 45 87-131 2-53 (147)
356 COG1587 HemD Uroporphyrinogen- 67.4 31 0.00067 27.1 7.1 74 21-94 109-185 (248)
357 TIGR00365 monothiol glutaredox 67.0 35 0.00075 22.7 7.8 45 33-77 10-60 (97)
358 TIGR02313 HpaI-NOT-DapA 2,4-di 66.8 40 0.00087 27.3 7.8 94 47-140 23-133 (294)
359 KOG0701|consensus 66.8 6.7 0.00015 39.1 3.7 92 35-133 293-396 (1606)
360 PF00462 Glutaredoxin: Glutare 66.7 24 0.00052 20.8 6.3 52 38-89 2-54 (60)
361 COG1609 PurR Transcriptional r 66.7 71 0.0015 26.3 9.7 70 45-115 75-144 (333)
362 PRK10014 DNA-binding transcrip 66.4 68 0.0015 25.9 9.9 40 53-92 89-128 (342)
363 cd01540 PBP1_arabinose_binding 66.3 61 0.0013 25.3 9.4 70 47-117 18-88 (289)
364 cd01541 PBP1_AraR Ligand-bindi 66.2 59 0.0013 25.1 9.8 12 99-110 111-122 (273)
365 smart00851 MGS MGS-like domain 66.2 9.3 0.0002 25.0 3.3 43 51-94 23-65 (90)
366 COG1587 HemD Uroporphyrinogen- 65.7 64 0.0014 25.3 8.9 89 51-140 90-181 (248)
367 cd06578 HemD Uroporphyrinogen- 65.6 42 0.00091 25.4 7.5 74 20-94 107-183 (239)
368 cd01524 RHOD_Pyr_redox Member 65.4 11 0.00025 24.3 3.7 37 83-119 50-86 (90)
369 cd06275 PBP1_PurR Ligand-bindi 65.2 61 0.0013 24.9 9.9 24 89-112 97-120 (269)
370 PF00581 Rhodanese: Rhodanese- 65.1 12 0.00027 24.6 3.9 38 33-70 66-109 (113)
371 cd06300 PBP1_ABC_sugar_binding 65.0 62 0.0013 25.0 9.8 10 97-106 111-120 (272)
372 cd06296 PBP1_CatR_like Ligand- 64.4 63 0.0014 24.8 9.8 20 91-110 99-118 (270)
373 PRK13103 secA preprotein trans 64.1 55 0.0012 31.1 8.8 66 22-94 112-181 (913)
374 KOG2340|consensus 64.0 14 0.00031 32.8 4.8 82 83-164 551-641 (698)
375 smart00450 RHOD Rhodanese Homo 64.0 18 0.00039 22.9 4.5 38 83-120 55-93 (100)
376 cd01445 TST_Repeats Thiosulfat 63.9 22 0.00047 25.4 5.1 47 23-69 82-134 (138)
377 TIGR00674 dapA dihydrodipicoli 63.8 75 0.0016 25.5 12.1 93 48-140 22-130 (285)
378 smart00115 CASc Caspase, inter 63.8 67 0.0015 25.2 8.3 49 33-82 7-66 (241)
379 COG0329 DapA Dihydrodipicolina 63.4 76 0.0017 25.9 8.8 94 47-140 27-136 (299)
380 COG0607 PspE Rhodanese-related 63.4 7.4 0.00016 25.8 2.5 37 33-69 60-97 (110)
381 cd06322 PBP1_ABC_sugar_binding 62.6 68 0.0015 24.6 9.6 39 54-92 25-63 (267)
382 cd03031 GRX_GRX_like Glutaredo 62.4 51 0.0011 24.0 6.9 44 37-80 2-52 (147)
383 PLN02723 3-mercaptopyruvate su 62.3 20 0.00043 29.5 5.3 48 22-69 255-305 (320)
384 TIGR03865 PQQ_CXXCW PQQ-depend 62.1 12 0.00027 27.5 3.7 37 33-69 115-153 (162)
385 PF02142 MGS: MGS-like domain 62.0 16 0.00034 24.2 3.9 47 88-140 16-66 (95)
386 PF04312 DUF460: Protein of un 61.8 31 0.00066 24.9 5.4 56 73-131 65-123 (138)
387 cd06320 PBP1_allose_binding Pe 61.8 72 0.0016 24.6 9.5 11 96-106 107-117 (275)
388 PF03358 FMN_red: NADPH-depend 61.7 55 0.0012 23.2 8.6 67 43-130 16-97 (152)
389 PRK10703 DNA-binding transcrip 61.2 86 0.0019 25.3 9.7 69 48-117 79-148 (341)
390 cd00953 KDG_aldolase KDG (2-ke 60.5 86 0.0019 25.1 8.6 92 47-140 22-127 (279)
391 cd06313 PBP1_ABC_sugar_binding 60.4 79 0.0017 24.6 9.7 71 48-118 19-90 (272)
392 PRK05320 rhodanese superfamily 60.4 13 0.00028 29.7 3.8 38 33-70 174-212 (257)
393 CHL00122 secA preprotein trans 60.3 31 0.00068 32.5 6.5 57 83-139 423-481 (870)
394 PRK09271 flavodoxin; Provision 60.3 53 0.0012 23.9 6.8 29 37-65 4-36 (160)
395 smart00487 DEXDc DEAD-like hel 60.3 60 0.0013 23.2 8.8 71 18-92 35-113 (201)
396 cd06315 PBP1_ABC_sugar_binding 60.2 81 0.0018 24.7 9.7 70 47-116 19-89 (280)
397 PF02525 Flavodoxin_2: Flavodo 60.2 70 0.0015 23.9 8.6 22 113-134 88-109 (199)
398 PF00258 Flavodoxin_1: Flavodo 60.0 43 0.00094 23.4 6.2 48 42-94 9-56 (143)
399 TIGR00288 conserved hypothetic 59.7 70 0.0015 23.7 11.0 94 21-115 43-136 (160)
400 cd06321 PBP1_ABC_sugar_binding 59.7 79 0.0017 24.3 9.4 84 35-119 31-131 (271)
401 cd01529 4RHOD_Repeats Member o 59.5 14 0.00031 24.1 3.3 37 83-119 55-92 (96)
402 PRK10653 D-ribose transporter 59.1 87 0.0019 24.7 9.6 69 47-115 45-114 (295)
403 cd06293 PBP1_LacI_like_11 Liga 59.1 80 0.0017 24.3 10.0 81 34-117 29-125 (269)
404 cd00408 DHDPS-like Dihydrodipi 59.1 90 0.0019 24.8 11.5 93 48-140 21-129 (281)
405 cd01423 MGS_CPS_I_III Methylgl 58.8 16 0.00034 25.1 3.6 77 9-94 2-81 (116)
406 COG0529 CysC Adenylylsulfate k 58.6 81 0.0017 24.1 10.4 121 45-166 38-186 (197)
407 cd06298 PBP1_CcpA_like Ligand- 58.5 81 0.0018 24.1 9.7 23 95-117 102-125 (268)
408 PRK11784 tRNA 2-selenouridine 57.9 76 0.0016 26.5 8.0 48 33-81 87-135 (345)
409 PF01583 APS_kinase: Adenylyls 57.9 73 0.0016 23.4 9.1 36 45-80 17-63 (156)
410 PF13245 AAA_19: Part of AAA d 57.5 27 0.00059 22.2 4.2 39 16-54 19-62 (76)
411 cd06273 PBP1_GntR_like_1 This 57.4 85 0.0018 24.0 9.8 25 94-118 101-126 (268)
412 PF02698 DUF218: DUF218 domain 57.1 38 0.00082 24.2 5.5 75 20-96 25-110 (155)
413 cd00532 MGS-like MGS-like doma 56.9 60 0.0013 22.1 6.7 74 10-92 2-76 (112)
414 cd06268 PBP1_ABC_transporter_L 56.7 88 0.0019 24.0 11.1 114 8-121 109-227 (298)
415 cd01523 RHOD_Lact_B Member of 56.6 19 0.00041 23.6 3.6 36 84-119 61-96 (100)
416 cd06319 PBP1_ABC_sugar_binding 56.5 90 0.002 24.0 9.6 67 49-115 20-87 (277)
417 cd01530 Cdc25 Cdc25 phosphatas 56.4 16 0.00034 25.4 3.2 37 33-69 67-117 (121)
418 KOG0391|consensus 56.0 55 0.0012 32.4 7.3 93 60-154 1253-1355(1958)
419 COG0634 Hpt Hypoxanthine-guani 56.0 25 0.00054 26.5 4.3 60 19-78 19-85 (178)
420 cd00032 CASc Caspase, interleu 55.8 97 0.0021 24.2 8.0 39 43-82 30-68 (243)
421 PF13380 CoA_binding_2: CoA bi 55.7 21 0.00045 24.7 3.8 94 42-138 11-106 (116)
422 PRK12902 secA preprotein trans 55.7 38 0.00082 32.1 6.3 57 83-139 438-496 (939)
423 PF01113 DapB_N: Dihydrodipico 55.6 52 0.0011 22.9 5.8 55 36-92 69-123 (124)
424 PF13167 GTP-bdg_N: GTP-bindin 55.5 49 0.0011 22.2 5.3 37 94-130 43-79 (95)
425 PRK09739 hypothetical protein; 55.4 65 0.0014 24.2 6.8 20 113-132 89-108 (199)
426 cd06295 PBP1_CelR Ligand bindi 55.4 95 0.0021 23.9 9.4 74 34-110 40-126 (275)
427 cd01526 RHOD_ThiF Member of th 55.3 14 0.0003 25.5 2.8 39 82-120 70-110 (122)
428 PF09480 PrgH: Type III secret 55.2 1.3E+02 0.0028 25.5 13.2 134 7-141 177-348 (375)
429 cd06277 PBP1_LacI_like_1 Ligan 55.2 94 0.002 23.9 9.5 56 51-110 51-119 (268)
430 PRK10355 xylF D-xylose transpo 54.9 1.2E+02 0.0025 24.8 10.0 63 52-114 49-112 (330)
431 smart00493 TOPRIM topoisomeras 54.6 48 0.0011 20.3 7.6 64 37-102 2-65 (76)
432 COG1203 CRISPR-associated heli 54.4 1.8E+02 0.004 26.9 12.1 87 83-174 439-536 (733)
433 cd06318 PBP1_ABC_sugar_binding 54.1 1E+02 0.0022 23.9 10.0 70 47-116 18-88 (282)
434 KOG0926|consensus 54.1 9.9 0.00021 35.5 2.3 54 60-120 606-659 (1172)
435 COG2519 GCD14 tRNA(1-methylade 54.0 28 0.0006 27.9 4.5 37 20-59 177-213 (256)
436 PRK10329 glutaredoxin-like pro 54.0 56 0.0012 20.9 6.4 53 37-90 3-56 (81)
437 cd00950 DHDPS Dihydrodipicolin 53.7 1.1E+02 0.0024 24.3 11.8 92 49-140 25-132 (284)
438 KOG4439|consensus 53.5 90 0.0019 29.0 8.0 94 19-117 729-829 (901)
439 PRK09189 uroporphyrinogen-III 53.5 1E+02 0.0022 23.8 9.0 55 85-140 119-176 (240)
440 cd01536 PBP1_ABC_sugar_binding 53.3 97 0.0021 23.4 10.0 15 96-110 106-122 (267)
441 cd06294 PBP1_ycjW_transcriptio 53.2 1E+02 0.0022 23.6 9.4 22 89-110 102-123 (270)
442 PF02617 ClpS: ATP-dependent C 53.2 42 0.00092 21.5 4.7 25 34-58 47-71 (82)
443 PRK06827 phosphoribosylpyropho 53.1 62 0.0013 27.5 6.8 53 41-94 274-329 (382)
444 PF03808 Glyco_tran_WecB: Glyc 52.9 91 0.002 23.0 11.5 47 36-82 50-99 (172)
445 cd01534 4RHOD_Repeat_3 Member 52.8 24 0.00053 22.9 3.6 36 84-119 56-91 (95)
446 PF14617 CMS1: U3-containing 9 52.6 48 0.001 26.5 5.7 57 35-94 127-187 (252)
447 cd06297 PBP1_LacI_like_12 Liga 52.5 1.1E+02 0.0023 23.7 9.8 16 92-107 97-112 (269)
448 PRK07246 bifunctional ATP-depe 52.4 1.3E+02 0.0028 28.3 9.3 76 81-159 644-728 (820)
449 cd06533 Glyco_transf_WecG_TagA 52.4 93 0.002 23.0 11.6 80 35-139 47-129 (171)
450 PRK01415 hypothetical protein; 52.1 19 0.00042 28.6 3.4 38 33-70 170-208 (247)
451 PF09633 DUF2023: Protein of u 52.0 53 0.0011 22.4 5.0 38 77-114 7-44 (101)
452 cd06167 LabA_like LabA_like pr 51.8 82 0.0018 22.2 11.8 97 21-117 26-132 (149)
453 TIGR01481 ccpA catabolite cont 51.0 1.3E+02 0.0027 24.1 9.9 65 50-115 81-145 (329)
454 COG0426 FpaA Uncharacterized f 50.9 92 0.002 26.6 7.4 100 36-138 249-361 (388)
455 KOG0385|consensus 50.9 98 0.0021 29.1 7.9 93 74-166 477-579 (971)
456 PLN02417 dihydrodipicolinate s 50.5 1.3E+02 0.0028 24.1 11.7 71 68-140 51-131 (280)
457 PRK13019 clpS ATP-dependent Cl 50.4 70 0.0015 21.4 5.5 30 32-61 61-90 (94)
458 KOG1123|consensus 50.4 37 0.0008 30.2 5.0 84 85-173 544-637 (776)
459 cd01521 RHOD_PspE2 Member of t 50.3 28 0.00061 23.4 3.7 37 83-119 63-101 (110)
460 COG0300 DltE Short-chain dehyd 50.3 1.3E+02 0.0029 24.2 8.7 72 21-94 19-94 (265)
461 PRK05597 molybdopterin biosynt 50.1 24 0.00053 29.5 3.9 38 33-70 313-351 (355)
462 TIGR02196 GlrX_YruB Glutaredox 50.1 53 0.0011 19.4 7.4 50 41-90 7-56 (74)
463 KOG1015|consensus 49.9 47 0.001 32.0 5.9 114 19-140 1126-1271(1567)
464 cd06317 PBP1_ABC_sugar_binding 49.8 1.2E+02 0.0025 23.3 10.0 69 50-118 22-91 (275)
465 cd00951 KDGDH 5-dehydro-4-deox 49.4 1.4E+02 0.003 24.1 12.1 93 48-140 24-131 (289)
466 TIGR03167 tRNA_sel_U_synt tRNA 49.3 52 0.0011 27.1 5.7 73 35-108 75-151 (311)
467 cd06306 PBP1_TorT-like TorT-li 49.0 1.2E+02 0.0027 23.4 9.5 68 48-115 19-88 (268)
468 PRK11747 dinG ATP-dependent DN 49.0 1.9E+02 0.0041 26.7 9.7 72 84-159 534-619 (697)
469 cd00578 L-fuc_L-ara-isomerases 48.8 1.8E+02 0.0038 25.1 9.4 96 20-120 24-138 (452)
470 PF07652 Flavi_DEAD: Flaviviru 48.8 38 0.00083 24.8 4.3 26 33-58 32-57 (148)
471 cd01525 RHOD_Kc Member of the 48.7 36 0.00079 22.3 4.0 36 84-119 65-101 (105)
472 PRK03767 NAD(P)H:quinone oxido 48.3 1.2E+02 0.0025 23.0 7.2 29 37-65 5-38 (200)
473 PRK05728 DNA polymerase III su 48.2 66 0.0014 23.1 5.5 39 17-55 11-50 (142)
474 PLN02522 ATP citrate (pro-S)-l 47.9 1.2E+02 0.0025 27.7 7.9 67 20-86 65-132 (608)
475 PRK00033 clpS ATP-dependent Cl 47.9 86 0.0019 21.3 6.2 31 32-62 66-96 (100)
476 PRK07411 hypothetical protein; 47.6 34 0.00073 29.0 4.5 38 33-70 341-378 (390)
477 PF13407 Peripla_BP_4: Peripla 46.8 1.3E+02 0.0028 22.9 8.6 67 51-117 21-89 (257)
478 PRK05752 uroporphyrinogen-III 46.7 1.4E+02 0.003 23.4 8.4 54 86-140 132-188 (255)
479 PRK10329 glutaredoxin-like pro 46.7 76 0.0016 20.3 6.7 53 87-140 3-56 (81)
480 cd01539 PBP1_GGBP Periplasmic 46.5 1.5E+02 0.0032 23.6 9.8 67 50-116 21-90 (303)
481 COG0426 FpaA Uncharacterized f 46.2 1.9E+02 0.0041 24.7 8.8 70 58-129 214-294 (388)
482 PRK10638 glutaredoxin 3; Provi 46.2 75 0.0016 20.1 6.9 53 36-88 3-56 (83)
483 PRK00142 putative rhodanese-re 45.9 26 0.00056 28.9 3.4 38 33-70 170-208 (314)
484 PF09015 NgoMIV_restric: NgoMI 45.9 37 0.0008 27.3 4.0 56 66-122 184-242 (278)
485 COG3457 Predicted amino acid r 45.7 31 0.00067 28.6 3.7 109 47-168 41-152 (353)
486 KOG1002|consensus 45.5 39 0.00085 30.0 4.5 84 84-167 638-736 (791)
487 COG1058 CinA Predicted nucleot 45.5 94 0.002 24.9 6.4 65 46-115 22-93 (255)
488 PF13458 Peripla_BP_6: Peripla 45.2 1.6E+02 0.0034 23.5 8.3 90 20-110 121-216 (343)
489 TIGR00596 rad1 DNA repair prot 45.1 33 0.00072 32.2 4.3 38 19-56 270-317 (814)
490 KOG0390|consensus 45.1 1.1E+02 0.0023 28.7 7.4 70 102-171 613-693 (776)
491 PF02617 ClpS: ATP-dependent C 45.0 82 0.0018 20.2 6.8 22 87-108 50-71 (82)
492 cd06271 PBP1_AglR_RafR_like Li 44.5 1.4E+02 0.003 22.7 9.4 20 91-110 102-121 (268)
493 cd06316 PBP1_ABC_sugar_binding 44.4 1.5E+02 0.0033 23.2 9.4 68 49-116 20-89 (294)
494 PF02603 Hpr_kinase_N: HPr Ser 44.2 31 0.00066 24.3 3.2 45 66-110 63-107 (127)
495 KOG0948|consensus 44.1 62 0.0013 30.3 5.6 53 72-132 370-423 (1041)
496 PF11181 YflT: Heat induced st 44.0 74 0.0016 21.3 5.0 28 112-139 76-103 (103)
497 cd01019 ZnuA Zinc binding prot 44.0 1.6E+02 0.0034 23.7 7.7 29 66-94 210-238 (286)
498 cd06302 PBP1_LsrB_Quorum_Sensi 43.6 1.6E+02 0.0035 23.2 9.8 68 49-116 20-89 (298)
499 KOG0626|consensus 43.1 97 0.0021 27.5 6.5 54 100-153 138-211 (524)
500 TIGR00683 nanA N-acetylneurami 42.6 1.8E+02 0.0039 23.5 11.6 94 45-140 21-134 (290)
No 1
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=99.97 E-value=4e-31 Score=227.15 Aligned_cols=132 Identities=28% Similarity=0.413 Sum_probs=114.5
Q ss_pred CCCCCCCCCeEEEEEEccChHHHHHHHHHh--hcCCCcEEEEeccHHHHHHHHHHHHhCCCeeEEecCCCCHHHHHHHHH
Q psy437 1 FISSFNRANLKYEILPKKNVLKEVISLIKA--KYSGQSGIVYCLTRKECDSVAAALAQERINAISYHAGLADKLRNEVQM 78 (184)
Q Consensus 1 ~~~s~~R~Nl~y~v~~~~~k~~~L~~~l~~--~~~~~~~IIf~~tr~~~e~la~~L~~~gi~~~~~hg~l~~~~R~~~~~ 78 (184)
|++||+||||+|.+.++.+-...+. +|.+ .....++||||.||+.+|.++++|+..|+++..|||||+.++|..+++
T Consensus 196 ~~~sfdRpNi~~~v~~~~~~~~q~~-fi~~~~~~~~~~GIIYc~sRk~~E~ia~~L~~~g~~a~~YHaGl~~~eR~~~q~ 274 (590)
T COG0514 196 FRGSFDRPNLALKVVEKGEPSDQLA-FLATVLPQLSKSGIIYCLTRKKVEELAEWLRKNGISAGAYHAGLSNEERERVQQ 274 (590)
T ss_pred EEecCCCchhhhhhhhcccHHHHHH-HHHhhccccCCCeEEEEeeHHhHHHHHHHHHHCCCceEEecCCCCHHHHHHHHH
Confidence 5789999999999999764333333 4542 336778999999999999999999999999999999999999999999
Q ss_pred HHhccCceEEEEEeecccHHHHHHHHHhcCCcEEEeeCCCChHHHHHHHHHhhCCCceEEEEEecCCccEEEecCCCCCc
Q psy437 79 KWISNKVHVGHWTVVSKECDSVAAALAQERINAISYHAGLADKLRNEVQMKWISNKVHLYNVWKIQWKRIIWIHSLVLIK 158 (184)
Q Consensus 79 ~f~~g~~~vlVaT~tr~~~e~~a~gL~~~gi~~~vih~~~p~~~r~~~~~~f~~~~~~v~va~D~~~vr~v~~~~~p~~~ 158 (184)
+|.+++.+|||||.+| || || ||||||||+|+++|.+.
T Consensus 275 ~f~~~~~~iiVAT~AF--------GM---GI--------------------------------dKpdVRfViH~~lP~s~ 311 (590)
T COG0514 275 AFLNDEIKVMVATNAF--------GM---GI--------------------------------DKPDVRFVIHYDLPGSI 311 (590)
T ss_pred HHhcCCCcEEEEeccc--------cC---cc--------------------------------CCCCceEEEEecCCCCH
Confidence 9999999999999955 44 33 89999999999999999
Q ss_pred cccccccccccCCccccccc
Q psy437 159 PDYLPPILDLRLGREDIREG 178 (184)
Q Consensus 159 e~y~~~i~~~~~~r~~~~~~ 178 (184)
|+|+||+ +|+|||+++.-
T Consensus 312 EsYyQE~--GRAGRDG~~a~ 329 (590)
T COG0514 312 ESYYQET--GRAGRDGLPAE 329 (590)
T ss_pred HHHHHHH--hhccCCCCcce
Confidence 9999999 59999987754
No 2
>KOG0351|consensus
Probab=99.94 E-value=7.3e-27 Score=210.44 Aligned_cols=132 Identities=40% Similarity=0.563 Sum_probs=115.9
Q ss_pred CCCCCCCCCeEEEEEEccC--hHHHHHHHHHhhcCCCcEEEEeccHHHHHHHHHHHHhCCCeeEEecCCCCHHHHHHHHH
Q psy437 1 FISSFNRANLKYEILPKKN--VLKEVISLIKAKYSGQSGIVYCLTRKECDSVAAALAQERINAISYHAGLADKLRNEVQM 78 (184)
Q Consensus 1 ~~~s~~R~Nl~y~v~~~~~--k~~~L~~~l~~~~~~~~~IIf~~tr~~~e~la~~L~~~gi~~~~~hg~l~~~~R~~~~~ 78 (184)
|..||+||||+|+|.++.+ ..-.+...++..++..++||||.+|+.|+.++..|+..|+++++||+||+..+|..++.
T Consensus 450 ~~~sfnR~NL~yeV~~k~~~~~~~~~~~~~~~~~~~~s~IIYC~sr~~ce~vs~~L~~~~~~a~~YHAGl~~~~R~~Vq~ 529 (941)
T KOG0351|consen 450 FKSSFNRPNLKYEVSPKTDKDALLDILEESKLRHPDQSGIIYCLSRKECEQVSAVLRSLGKSAAFYHAGLPPKERETVQK 529 (941)
T ss_pred ecccCCCCCceEEEEeccCccchHHHHHHhhhcCCCCCeEEEeCCcchHHHHHHHHHHhchhhHhhhcCCCHHHHHHHHH
Confidence 5689999999999999873 44555666666678889999999999999999999999999999999999999999999
Q ss_pred HHhccCceEEEEEeecccHHHHHHHHHhcCCcEEEeeCCCChHHHHHHHHHhhCCCceEEEEEecCCccEEEecCCCCCc
Q psy437 79 KWISNKVHVGHWTVVSKECDSVAAALAQERINAISYHAGLADKLRNEVQMKWISNKVHLYNVWKIQWKRIIWIHSLVLIK 158 (184)
Q Consensus 79 ~f~~g~~~vlVaT~tr~~~e~~a~gL~~~gi~~~vih~~~p~~~r~~~~~~f~~~~~~v~va~D~~~vr~v~~~~~p~~~ 158 (184)
+|..++.+|+|||-+|| | || |+||||+||||++|++.
T Consensus 530 ~w~~~~~~VivATVAFG--------M---GI--------------------------------dK~DVR~ViH~~lPks~ 566 (941)
T KOG0351|consen 530 AWMSDKIRVIVATVAFG--------M---GI--------------------------------DKPDVRFVIHYSLPKSF 566 (941)
T ss_pred HHhcCCCeEEEEEeecc--------C---CC--------------------------------CCCceeEEEECCCchhH
Confidence 99999999999999554 4 32 78999999999999999
Q ss_pred cccccccccccCCcccccc
Q psy437 159 PDYLPPILDLRLGREDIRE 177 (184)
Q Consensus 159 e~y~~~i~~~~~~r~~~~~ 177 (184)
|.|||++ +|+||++++.
T Consensus 567 E~YYQE~--GRAGRDG~~s 583 (941)
T KOG0351|consen 567 EGYYQEA--GRAGRDGLPS 583 (941)
T ss_pred HHHHHhc--cccCcCCCcc
Confidence 9999998 5999987664
No 3
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=99.91 E-value=2.6e-24 Score=195.14 Aligned_cols=127 Identities=28% Similarity=0.473 Sum_probs=113.8
Q ss_pred CCCCCCCCCeEEEEEEccCh-HHHHHHHHHhhcCCCcEEEEeccHHHHHHHHHHHHhCCCeeEEecCCCCHHHHHHHHHH
Q psy437 1 FISSFNRANLKYEILPKKNV-LKEVISLIKAKYSGQSGIVYCLTRKECDSVAAALAQERINAISYHAGLADKLRNEVQMK 79 (184)
Q Consensus 1 ~~~s~~R~Nl~y~v~~~~~k-~~~L~~~l~~~~~~~~~IIf~~tr~~~e~la~~L~~~gi~~~~~hg~l~~~~R~~~~~~ 79 (184)
|..||+||||+|.|.++..+ ...|..++.......++||||+|++.|+.++..|...|+++..|||||++++|..++++
T Consensus 646 fr~Sf~RpNL~y~Vv~k~kk~le~L~~~I~~~~~~esgIIYC~SRke~E~LAe~L~~~Gika~~YHAGLs~eeR~~vqe~ 725 (1195)
T PLN03137 646 FRQSFNRPNLWYSVVPKTKKCLEDIDKFIKENHFDECGIIYCLSRMDCEKVAERLQEFGHKAAFYHGSMDPAQRAFVQKQ 725 (1195)
T ss_pred eecccCccceEEEEeccchhHHHHHHHHHHhcccCCCceeEeCchhHHHHHHHHHHHCCCCeeeeeCCCCHHHHHHHHHH
Confidence 46799999999999987643 56777777654446789999999999999999999999999999999999999999999
Q ss_pred HhccCceEEEEEeecccHHHHHHHHHhcCCcEEEeeCCCChHHHHHHHHHhhCCC
Q psy437 80 WISNKVHVGHWTVVSKECDSVAAALAQERINAISYHAGLADKLRNEVQMKWISNK 134 (184)
Q Consensus 80 f~~g~~~vlVaT~tr~~~e~~a~gL~~~gi~~~vih~~~p~~~r~~~~~~f~~~~ 134 (184)
|.+|+++|||||+ ..++|+|+++|+ +|||+++|.+.+.|+||.+|.|.
T Consensus 726 F~~Gei~VLVATd------AFGMGIDkPDVR-~VIHydlPkSiEsYyQriGRAGR 773 (1195)
T PLN03137 726 WSKDEINIICATV------AFGMGINKPDVR-FVIHHSLPKSIEGYHQECGRAGR 773 (1195)
T ss_pred HhcCCCcEEEEec------hhhcCCCccCCc-EEEEcCCCCCHHHHHhhhcccCC
Confidence 9999999999999 446799999999 99999999999999999977664
No 4
>KOG0352|consensus
Probab=99.90 E-value=1.3e-24 Score=178.48 Aligned_cols=131 Identities=34% Similarity=0.421 Sum_probs=106.9
Q ss_pred CCCCCCCCCeEEEEEEcc---ChHHHHHHHHHhhc------------CCCcEEEEeccHHHHHHHHHHHHhCCCeeEEec
Q psy437 1 FISSFNRANLKYEILPKK---NVLKEVISLIKAKY------------SGQSGIVYCLTRKECDSVAAALAQERINAISYH 65 (184)
Q Consensus 1 ~~~s~~R~Nl~y~v~~~~---~k~~~L~~~l~~~~------------~~~~~IIf~~tr~~~e~la~~L~~~gi~~~~~h 65 (184)
|.++.+|.||+|.+..++ +.+..|.++-.... ..+.+||||.||..||++|-.|...|+++.+||
T Consensus 207 FkTP~FR~NLFYD~~~K~~I~D~~~~LaDF~~~~LG~~~~~~~~~K~~~GCGIVYCRTR~~cEq~AI~l~~~Gi~A~AYH 286 (641)
T KOG0352|consen 207 FKTPTFRDNLFYDNHMKSFITDCLTVLADFSSSNLGKHEKASQNKKTFTGCGIVYCRTRNECEQVAIMLEIAGIPAMAYH 286 (641)
T ss_pred ccCcchhhhhhHHHHHHHHhhhHhHhHHHHHHHhcCChhhhhcCCCCcCcceEEEeccHHHHHHHHHHhhhcCcchHHHh
Confidence 788999999999998765 45666666543221 235689999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHhccCceEEEEEeecccHHHHHHHHHhcCCcEEEeeCCCChHHHHHHHHHhhCCCceEEEEEecCC
Q psy437 66 AGLADKLRNEVQMKWISNKVHVGHWTVVSKECDSVAAALAQERINAISYHAGLADKLRNEVQMKWISNKVHLYNVWKIQW 145 (184)
Q Consensus 66 g~l~~~~R~~~~~~f~~g~~~vlVaT~tr~~~e~~a~gL~~~gi~~~vih~~~p~~~r~~~~~~f~~~~~~v~va~D~~~ 145 (184)
+||...+|.+++++|.+++++||+||.++++ |. |+|+
T Consensus 287 AGLK~~ERTeVQe~WM~~~~PvI~AT~SFGM------GV-------------------------------------DKp~ 323 (641)
T KOG0352|consen 287 AGLKKKERTEVQEKWMNNEIPVIAATVSFGM------GV-------------------------------------DKPD 323 (641)
T ss_pred cccccchhHHHHHHHhcCCCCEEEEEecccc------cc-------------------------------------CCcc
Confidence 9999999999999999999999999997755 22 6777
Q ss_pred ccEEEecCCCCCccccccccccccCCccccc
Q psy437 146 KRIIWIHSLVLIKPDYLPPILDLRLGREDIR 176 (184)
Q Consensus 146 vr~v~~~~~p~~~e~y~~~i~~~~~~r~~~~ 176 (184)
||||+|+++|++.-.|||+- +|+||++++
T Consensus 324 VRFViHW~~~qn~AgYYQES--GRAGRDGk~ 352 (641)
T KOG0352|consen 324 VRFVIHWSPSQNLAGYYQES--GRAGRDGKR 352 (641)
T ss_pred eeEEEecCchhhhHHHHHhc--cccccCCCc
Confidence 77777777777777777775 577777554
No 5
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.89 E-value=1e-22 Score=174.63 Aligned_cols=126 Identities=29% Similarity=0.521 Sum_probs=114.5
Q ss_pred CCCCCCCCeEEEEEEcc-ChHHHHHHHHHhhcCCCcEEEEeccHHHHHHHHHHHHhCCCeeEEecCCCCHHHHHHHHHHH
Q psy437 2 ISSFNRANLKYEILPKK-NVLKEVISLIKAKYSGQSGIVYCLTRKECDSVAAALAQERINAISYHAGLADKLRNEVQMKW 80 (184)
Q Consensus 2 ~~s~~R~Nl~y~v~~~~-~k~~~L~~~l~~~~~~~~~IIf~~tr~~~e~la~~L~~~gi~~~~~hg~l~~~~R~~~~~~f 80 (184)
..|++|||++|.+.+.. .....+..++.+...+.++||||+|++.|+.++..|...|+++..|||+|++++|..+++.|
T Consensus 193 ~~s~~r~nl~~~v~~~~~~~~~~l~~~l~~~~~~~~~IIF~~s~~~~e~la~~L~~~g~~~~~~H~~l~~~eR~~i~~~F 272 (470)
T TIGR00614 193 CTSFDRPNLYYEVRRKTPKILEDLLRFIRKEFKGKSGIIYCPSRKKSEQVTASLQNLGIAAGAYHAGLEISARDDVHHKF 272 (470)
T ss_pred eCCCCCCCcEEEEEeCCccHHHHHHHHHHHhcCCCceEEEECcHHHHHHHHHHHHhcCCCeeEeeCCCCHHHHHHHHHHH
Confidence 46899999999998876 56778888886544666789999999999999999999999999999999999999999999
Q ss_pred hccCceEEEEEeecccHHHHHHHHHhcCCcEEEeeCCCChHHHHHHHHHhhCCC
Q psy437 81 ISNKVHVGHWTVVSKECDSVAAALAQERINAISYHAGLADKLRNEVQMKWISNK 134 (184)
Q Consensus 81 ~~g~~~vlVaT~tr~~~e~~a~gL~~~gi~~~vih~~~p~~~r~~~~~~f~~~~ 134 (184)
++|+++|||||+ .+++|+|.++++ .|||+++|.+.+.|+|+.+|.|.
T Consensus 273 ~~g~~~vLVaT~------~~~~GID~p~V~-~VI~~~~P~s~~~y~Qr~GRaGR 319 (470)
T TIGR00614 273 QRDEIQVVVATV------AFGMGINKPDVR-FVIHYSLPKSMESYYQESGRAGR 319 (470)
T ss_pred HcCCCcEEEEec------hhhccCCcccce-EEEEeCCCCCHHHHHhhhcCcCC
Confidence 999999999999 678899999999 99999999999999999977654
No 6
>KOG0331|consensus
Probab=99.89 E-value=3.3e-23 Score=175.81 Aligned_cols=109 Identities=18% Similarity=0.237 Sum_probs=100.1
Q ss_pred ChHHHHHHHHHhhc--CCCcEEEEeccHHHHHHHHHHHHhCCCeeEEecCCCCHHHHHHHHHHHhccCceEEEEEeeccc
Q psy437 19 NVLKEVISLIKAKY--SGQSGIVYCLTRKECDSVAAALAQERINAISYHAGLADKLRNEVQMKWISNKVHVGHWTVVSKE 96 (184)
Q Consensus 19 ~k~~~L~~~l~~~~--~~~~~IIf~~tr~~~e~la~~L~~~gi~~~~~hg~l~~~~R~~~~~~f~~g~~~vlVaT~tr~~ 96 (184)
.|.+.|..+|.+.. ..+++||||+|++.|+.++..|+..++++..+||+++|.+|..+++.|++|..+|||||+
T Consensus 324 ~K~~~l~~lL~~~~~~~~~KvIIFc~tkr~~~~l~~~l~~~~~~a~~iHGd~sQ~eR~~~L~~FreG~~~vLVATd---- 399 (519)
T KOG0331|consen 324 AKLRKLGKLLEDISSDSEGKVIIFCETKRTCDELARNLRRKGWPAVAIHGDKSQSERDWVLKGFREGKSPVLVATD---- 399 (519)
T ss_pred HHHHHHHHHHHHHhccCCCcEEEEecchhhHHHHHHHHHhcCcceeeecccccHHHHHHHHHhcccCCcceEEEcc----
Confidence 46666777776542 566899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCcEEEeeCCCChHHHHHHHHHhhCCC
Q psy437 97 CDSVAAALAQERINAISYHAGLADKLRNEVQMKWISNK 134 (184)
Q Consensus 97 ~e~~a~gL~~~gi~~~vih~~~p~~~r~~~~~~f~~~~ 134 (184)
++|||||.++|+ +||||++|++.++|+||..++|+
T Consensus 400 --VAaRGLDi~dV~-lVInydfP~~vEdYVHRiGRTGR 434 (519)
T KOG0331|consen 400 --VAARGLDVPDVD-LVINYDFPNNVEDYVHRIGRTGR 434 (519)
T ss_pred --cccccCCCcccc-EEEeCCCCCCHHHHHhhcCcccc
Confidence 999999999999 99999999999999999987765
No 7
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=99.88 E-value=2.5e-22 Score=176.94 Aligned_cols=125 Identities=26% Similarity=0.501 Sum_probs=115.1
Q ss_pred CCCCCCCCeEEEEEEccChHHHHHHHHHhhcCCCcEEEEeccHHHHHHHHHHHHhCCCeeEEecCCCCHHHHHHHHHHHh
Q psy437 2 ISSFNRANLKYEILPKKNVLKEVISLIKAKYSGQSGIVYCLTRKECDSVAAALAQERINAISYHAGLADKLRNEVQMKWI 81 (184)
Q Consensus 2 ~~s~~R~Nl~y~v~~~~~k~~~L~~~l~~~~~~~~~IIf~~tr~~~e~la~~L~~~gi~~~~~hg~l~~~~R~~~~~~f~ 81 (184)
..+++|||+.|.+.....+...|..++... .+.++||||+|++.|+.++..|...|+++..|||+|++++|..+++.|.
T Consensus 205 ~~~~~r~nl~~~v~~~~~~~~~l~~~l~~~-~~~~~IIFc~tr~~~e~la~~L~~~g~~v~~~Ha~l~~~~R~~i~~~F~ 283 (607)
T PRK11057 205 ISSFDRPNIRYTLVEKFKPLDQLMRYVQEQ-RGKSGIIYCNSRAKVEDTAARLQSRGISAAAYHAGLDNDVRADVQEAFQ 283 (607)
T ss_pred ECCCCCCcceeeeeeccchHHHHHHHHHhc-CCCCEEEEECcHHHHHHHHHHHHhCCCCEEEecCCCCHHHHHHHHHHHH
Confidence 468999999999988777788888888653 6789999999999999999999999999999999999999999999999
Q ss_pred ccCceEEEEEeecccHHHHHHHHHhcCCcEEEeeCCCChHHHHHHHHHhhCCC
Q psy437 82 SNKVHVGHWTVVSKECDSVAAALAQERINAISYHAGLADKLRNEVQMKWISNK 134 (184)
Q Consensus 82 ~g~~~vlVaT~tr~~~e~~a~gL~~~gi~~~vih~~~p~~~r~~~~~~f~~~~ 134 (184)
+|+.+|||||+ .+++|+|+++++ +|||+++|.+.++|+|+..|.|.
T Consensus 284 ~g~~~VLVaT~------a~~~GIDip~V~-~VI~~d~P~s~~~y~Qr~GRaGR 329 (607)
T PRK11057 284 RDDLQIVVATV------AFGMGINKPNVR-FVVHFDIPRNIESYYQETGRAGR 329 (607)
T ss_pred CCCCCEEEEec------hhhccCCCCCcC-EEEEeCCCCCHHHHHHHhhhccC
Confidence 99999999999 668899999999 99999999999999999977664
No 8
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=99.88 E-value=3.4e-22 Score=175.79 Aligned_cols=126 Identities=30% Similarity=0.508 Sum_probs=116.0
Q ss_pred CCCCCCCCCeEEEEEEccChHHHHHHHHHhhcCCCcEEEEeccHHHHHHHHHHHHhCCCeeEEecCCCCHHHHHHHHHHH
Q psy437 1 FISSFNRANLKYEILPKKNVLKEVISLIKAKYSGQSGIVYCLTRKECDSVAAALAQERINAISYHAGLADKLRNEVQMKW 80 (184)
Q Consensus 1 ~~~s~~R~Nl~y~v~~~~~k~~~L~~~l~~~~~~~~~IIf~~tr~~~e~la~~L~~~gi~~~~~hg~l~~~~R~~~~~~f 80 (184)
|..+++|||+.|.+.....+...+.+++... .+.++||||+|++.|+.+++.|...|+++..|||+|++++|..+++.|
T Consensus 192 ~~~~~~r~nl~~~v~~~~~~~~~l~~~l~~~-~~~~~IIf~~sr~~~e~la~~L~~~g~~~~~~H~~l~~~~R~~i~~~F 270 (591)
T TIGR01389 192 FITSFDRPNLRFSVVKKNNKQKFLLDYLKKH-RGQSGIIYASSRKKVEELAERLESQGISALAYHAGLSNKVRAENQEDF 270 (591)
T ss_pred EecCCCCCCcEEEEEeCCCHHHHHHHHHHhc-CCCCEEEEECcHHHHHHHHHHHHhCCCCEEEEECCCCHHHHHHHHHHH
Confidence 3578999999999998888888999988764 567899999999999999999999999999999999999999999999
Q ss_pred hccCceEEEEEeecccHHHHHHHHHhcCCcEEEeeCCCChHHHHHHHHHhhCCC
Q psy437 81 ISNKVHVGHWTVVSKECDSVAAALAQERINAISYHAGLADKLRNEVQMKWISNK 134 (184)
Q Consensus 81 ~~g~~~vlVaT~tr~~~e~~a~gL~~~gi~~~vih~~~p~~~r~~~~~~f~~~~ 134 (184)
.+|+.+|||||+ .++.|+|+++++ .|+|+++|.+.+.|+|+..+.|.
T Consensus 271 ~~g~~~vlVaT~------a~~~GID~p~v~-~VI~~~~p~s~~~y~Q~~GRaGR 317 (591)
T TIGR01389 271 LYDDVKVMVATN------AFGMGIDKPNVR-FVIHYDMPGNLESYYQEAGRAGR 317 (591)
T ss_pred HcCCCcEEEEec------hhhccCcCCCCC-EEEEcCCCCCHHHHhhhhccccC
Confidence 999999999999 557799999999 99999999999999999977653
No 9
>KOG0353|consensus
Probab=99.88 E-value=1.6e-22 Score=164.60 Aligned_cols=122 Identities=34% Similarity=0.604 Sum_probs=112.8
Q ss_pred CCCCCCCCCeEEEEEEccC----hHHHHHHHHHhhcCCCcEEEEeccHHHHHHHHHHHHhCCCeeEEecCCCCHHHHHHH
Q psy437 1 FISSFNRANLKYEILPKKN----VLKEVISLIKAKYSGQSGIVYCLTRKECDSVAAALAQERINAISYHAGLADKLRNEV 76 (184)
Q Consensus 1 ~~~s~~R~Nl~y~v~~~~~----k~~~L~~~l~~~~~~~~~IIf~~tr~~~e~la~~L~~~gi~~~~~hg~l~~~~R~~~ 76 (184)
|+++|+||||+|.|..+.. -.+.+..+|+..+.+.++||||-++++||.++..|+..|+.+..||+.|.+++|..+
T Consensus 280 f~a~fnr~nl~yev~qkp~n~dd~~edi~k~i~~~f~gqsgiiyc~sq~d~ekva~alkn~gi~a~~yha~lep~dks~~ 359 (695)
T KOG0353|consen 280 FRAGFNRPNLKYEVRQKPGNEDDCIEDIAKLIKGDFAGQSGIIYCFSQKDCEKVAKALKNHGIHAGAYHANLEPEDKSGA 359 (695)
T ss_pred eecccCCCCceeEeeeCCCChHHHHHHHHHHhccccCCCcceEEEeccccHHHHHHHHHhcCccccccccccCccccccc
Confidence 7899999999999997653 567788888777788999999999999999999999999999999999999999999
Q ss_pred HHHHhccCceEEEEEeecccHHHHHHHHHhcCCcEEEeeCCCChHHHHHHHHH
Q psy437 77 QMKWISNKVHVGHWTVVSKECDSVAAALAQERINAISYHAGLADKLRNEVQMK 129 (184)
Q Consensus 77 ~~~f~~g~~~vlVaT~tr~~~e~~a~gL~~~gi~~~vih~~~p~~~r~~~~~~ 129 (184)
.+.|..|+++|+|||-++++ |+|+|+++ +|||..||++.++|+|.+
T Consensus 360 hq~w~a~eiqvivatvafgm------gidkpdvr-fvihhsl~ksienyyqas 405 (695)
T KOG0353|consen 360 HQGWIAGEIQVIVATVAFGM------GIDKPDVR-FVIHHSLPKSIENYYQAS 405 (695)
T ss_pred cccccccceEEEEEEeeecc------cCCCCCee-EEEecccchhHHHHHHHH
Confidence 99999999999999997766 77999999 999999999999999965
No 10
>KOG0328|consensus
Probab=99.87 E-value=3.5e-22 Score=156.82 Aligned_cols=117 Identities=14% Similarity=0.199 Sum_probs=106.3
Q ss_pred eEEEEEEccC-hHHHHHHHHHhhcCCCcEEEEeccHHHHHHHHHHHHhCCCeeEEecCCCCHHHHHHHHHHHhccCceEE
Q psy437 10 LKYEILPKKN-VLKEVISLIKAKYSGQSGIVYCLTRKECDSVAAALAQERINAISYHAGLADKLRNEVQMKWISNKVHVG 88 (184)
Q Consensus 10 l~y~v~~~~~-k~~~L~~~l~~~~~~~~~IIf~~tr~~~e~la~~L~~~gi~~~~~hg~l~~~~R~~~~~~f~~g~~~vl 88 (184)
.+|.....++ |++.|+++.... .-.+++|||+|++.++++.+.|++.++.+...||+|++++|++++.+|++|+.+||
T Consensus 242 qf~v~ve~EewKfdtLcdLYd~L-tItQavIFcnTk~kVdwLtekm~~~nftVssmHGDm~qkERd~im~dFRsg~SrvL 320 (400)
T KOG0328|consen 242 QFFVAVEKEEWKFDTLCDLYDTL-TITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMEQKERDKIMNDFRSGKSRVL 320 (400)
T ss_pred hheeeechhhhhHhHHHHHhhhh-ehheEEEEecccchhhHHHHHHHhhCceeeeccCCcchhHHHHHHHHhhcCCceEE
Confidence 3555555554 999999988553 67899999999999999999999999999999999999999999999999999999
Q ss_pred EEEeecccHHHHHHHHHhcCCcEEEeeCCCChHHHHHHHHHhhCCC
Q psy437 89 HWTVVSKECDSVAAALAQERINAISYHAGLADKLRNEVQMKWISNK 134 (184)
Q Consensus 89 VaT~tr~~~e~~a~gL~~~gi~~~vih~~~p~~~r~~~~~~f~~~~ 134 (184)
++|+ .+|+|||.+.++ +|+|||+|...+.|+||..++|.
T Consensus 321 itTD------VwaRGiDv~qVs-lviNYDLP~nre~YIHRIGRSGR 359 (400)
T KOG0328|consen 321 ITTD------VWARGIDVQQVS-LVINYDLPNNRELYIHRIGRSGR 359 (400)
T ss_pred EEec------hhhccCCcceeE-EEEecCCCccHHHHhhhhccccc
Confidence 9999 999999999999 99999999999999999988875
No 11
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=99.85 E-value=2.7e-21 Score=167.31 Aligned_cols=107 Identities=17% Similarity=0.173 Sum_probs=99.3
Q ss_pred ChHHHHHHHHHhhcCCCcEEEEeccHHHHHHHHHHHHhCCCeeEEecCCCCHHHHHHHHHHHhccCceEEEEEeecccHH
Q psy437 19 NVLKEVISLIKAKYSGQSGIVYCLTRKECDSVAAALAQERINAISYHAGLADKLRNEVQMKWISNKVHVGHWTVVSKECD 98 (184)
Q Consensus 19 ~k~~~L~~~l~~~~~~~~~IIf~~tr~~~e~la~~L~~~gi~~~~~hg~l~~~~R~~~~~~f~~g~~~vlVaT~tr~~~e 98 (184)
.|+..|..++... ...++||||+|+..++.++..|...|+++..+||+|+|++|.++++.|++|+.+|||||+
T Consensus 259 ~k~~~L~~ll~~~-~~~~~IVF~~tk~~~~~l~~~l~~~g~~~~~lhG~l~q~~R~~~l~~F~~g~~~vLVaTD------ 331 (513)
T COG0513 259 EKLELLLKLLKDE-DEGRVIVFVRTKRLVEELAESLRKRGFKVAALHGDLPQEERDRALEKFKDGELRVLVATD------ 331 (513)
T ss_pred HHHHHHHHHHhcC-CCCeEEEEeCcHHHHHHHHHHHHHCCCeEEEecCCCCHHHHHHHHHHHHcCCCCEEEEec------
Confidence 3999999988754 556799999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCcEEEeeCCCChHHHHHHHHHhhCC
Q psy437 99 SVAAALAQERINAISYHAGLADKLRNEVQMKWISN 133 (184)
Q Consensus 99 ~~a~gL~~~gi~~~vih~~~p~~~r~~~~~~f~~~ 133 (184)
.+|||||+++++ +|+|||+|.+.+.|+||.++.|
T Consensus 332 vaaRGiDi~~v~-~VinyD~p~~~e~yvHRiGRTg 365 (513)
T COG0513 332 VAARGLDIPDVS-HVINYDLPLDPEDYVHRIGRTG 365 (513)
T ss_pred hhhccCCccccc-eeEEccCCCCHHHheeccCccc
Confidence 899999999999 9999999999999999986654
No 12
>KOG0333|consensus
Probab=99.85 E-value=4.4e-21 Score=160.84 Aligned_cols=110 Identities=12% Similarity=0.176 Sum_probs=102.1
Q ss_pred EccChHHHHHHHHHhhcCCCcEEEEeccHHHHHHHHHHHHhCCCeeEEecCCCCHHHHHHHHHHHhccCceEEEEEeecc
Q psy437 16 PKKNVLKEVISLIKAKYSGQSGIVYCLTRKECDSVAAALAQERINAISYHAGLADKLRNEVQMKWISNKVHVGHWTVVSK 95 (184)
Q Consensus 16 ~~~~k~~~L~~~l~~~~~~~~~IIf~~tr~~~e~la~~L~~~gi~~~~~hg~l~~~~R~~~~~~f~~g~~~vlVaT~tr~ 95 (184)
..+.|...|..+|.+. ..+++|||+|+++.|+.+|+.|.+.|+++..||||.++++|+.+++.|++|...|||||+
T Consensus 500 ~ed~k~kkL~eil~~~-~~ppiIIFvN~kk~~d~lAk~LeK~g~~~~tlHg~k~qeQRe~aL~~fr~~t~dIlVaTD--- 575 (673)
T KOG0333|consen 500 SEDEKRKKLIEILESN-FDPPIIIFVNTKKGADALAKILEKAGYKVTTLHGGKSQEQRENALADFREGTGDILVATD--- 575 (673)
T ss_pred cchHHHHHHHHHHHhC-CCCCEEEEEechhhHHHHHHHHhhccceEEEeeCCccHHHHHHHHHHHHhcCCCEEEEec---
Confidence 3345889999999764 568999999999999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHhcCCcEEEeeCCCChHHHHHHHHHhhCC
Q psy437 96 ECDSVAAALAQERINAISYHAGLADKLRNEVQMKWISN 133 (184)
Q Consensus 96 ~~e~~a~gL~~~gi~~~vih~~~p~~~r~~~~~~f~~~ 133 (184)
.+++|+|+++|+ +|+||+|+++.++|+||..+.|
T Consensus 576 ---vAgRGIDIpnVS-lVinydmaksieDYtHRIGRTg 609 (673)
T KOG0333|consen 576 ---VAGRGIDIPNVS-LVINYDMAKSIEDYTHRIGRTG 609 (673)
T ss_pred ---ccccCCCCCccc-eeeecchhhhHHHHHHHhcccc
Confidence 889999999999 9999999999999999997654
No 13
>KOG0330|consensus
Probab=99.83 E-value=1.5e-20 Score=152.83 Aligned_cols=115 Identities=17% Similarity=0.198 Sum_probs=106.2
Q ss_pred EEEEEEccChHHHHHHHHHhhcCCCcEEEEeccHHHHHHHHHHHHhCCCeeEEecCCCCHHHHHHHHHHHhccCceEEEE
Q psy437 11 KYEILPKKNVLKEVISLIKAKYSGQSGIVYCLTRKECDSVAAALAQERINAISYHAGLADKLRNEVQMKWISNKVHVGHW 90 (184)
Q Consensus 11 ~y~v~~~~~k~~~L~~~l~~~~~~~~~IIf~~tr~~~e~la~~L~~~gi~~~~~hg~l~~~~R~~~~~~f~~g~~~vlVa 90 (184)
+|.+.+...|...|+.+|++. .+.+.||||+|+.++..++-.|+..|+.+..+||.|++..|...+++|++|...||||
T Consensus 278 ~ylfv~~k~K~~yLV~ll~e~-~g~s~iVF~~t~~tt~~la~~L~~lg~~a~~LhGqmsq~~Rlg~l~~Fk~~~r~iLv~ 356 (476)
T KOG0330|consen 278 TYLFVPGKDKDTYLVYLLNEL-AGNSVIVFCNTCNTTRFLALLLRNLGFQAIPLHGQMSQSKRLGALNKFKAGARSILVC 356 (476)
T ss_pred heEeccccccchhHHHHHHhh-cCCcEEEEEeccchHHHHHHHHHhcCcceecccchhhHHHHHHHHHHHhccCCcEEEe
Confidence 466666667888999988764 7789999999999999999999999999999999999999999999999999999999
Q ss_pred EeecccHHHHHHHHHhcCCcEEEeeCCCChHHHHHHHHHhhCC
Q psy437 91 TVVSKECDSVAAALAQERINAISYHAGLADKLRNEVQMKWISN 133 (184)
Q Consensus 91 T~tr~~~e~~a~gL~~~gi~~~vih~~~p~~~r~~~~~~f~~~ 133 (184)
|+ ..+||||+++++ +|+|||+|....+|+||..+.+
T Consensus 357 TD------VaSRGLDip~Vd-~VVNyDiP~~skDYIHRvGRta 392 (476)
T KOG0330|consen 357 TD------VASRGLDIPHVD-VVVNYDIPTHSKDYIHRVGRTA 392 (476)
T ss_pred cc------hhcccCCCCCce-EEEecCCCCcHHHHHHHccccc
Confidence 99 899999999999 9999999999999999996543
No 14
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=99.83 E-value=1.9e-19 Score=155.81 Aligned_cols=134 Identities=17% Similarity=0.168 Sum_probs=118.6
Q ss_pred EEEEeccHHHHHHHHHHHHh----C-CCeeEEecCCCCHHHHHHHHHHHhccCceEEEEEeec-----------------
Q psy437 37 GIVYCLTRKECDSVAAALAQ----E-RINAISYHAGLADKLRNEVQMKWISNKVHVGHWTVVS----------------- 94 (184)
Q Consensus 37 ~IIf~~tr~~~e~la~~L~~----~-gi~~~~~hg~l~~~~R~~~~~~f~~g~~~vlVaT~tr----------------- 94 (184)
+||.+|||+.|.++++.+.. . ++.+..+.||++...+...+ ..| .+|||+|+.|
T Consensus 102 aLil~PTRELA~Qi~~~~~~~~~~~~~~~~~~i~GG~~~~~q~~~l---~~~-~~ivVaTPGRllD~i~~~~l~l~~v~~ 177 (513)
T COG0513 102 ALILAPTRELAVQIAEELRKLGKNLGGLRVAVVYGGVSIRKQIEAL---KRG-VDIVVATPGRLLDLIKRGKLDLSGVET 177 (513)
T ss_pred eEEECCCHHHHHHHHHHHHHHHhhcCCccEEEEECCCCHHHHHHHH---hcC-CCEEEECccHHHHHHHcCCcchhhcCE
Confidence 89999999999999998874 2 57789999998876655444 445 8899999998
Q ss_pred --------------------------------------------------------------------------------
Q psy437 95 -------------------------------------------------------------------------------- 94 (184)
Q Consensus 95 -------------------------------------------------------------------------------- 94 (184)
T Consensus 178 lVlDEADrmLd~Gf~~~i~~I~~~~p~~~qtllfSAT~~~~i~~l~~~~l~~p~~i~v~~~~~~~~~~~i~q~~~~v~~~ 257 (513)
T COG0513 178 LVLDEADRMLDMGFIDDIEKILKALPPDRQTLLFSATMPDDIRELARRYLNDPVEIEVSVEKLERTLKKIKQFYLEVESE 257 (513)
T ss_pred EEeccHhhhhcCCCHHHHHHHHHhCCcccEEEEEecCCCHHHHHHHHHHccCCcEEEEccccccccccCceEEEEEeCCH
Confidence
Q ss_pred --------------------------ccHHHHHHHHHhcCCcEEEeeCCCChHHHHHHHHHhhCCCceEEEE-------E
Q psy437 95 --------------------------KECDSVAAALAQERINAISYHAGLADKLRNEVQMKWISNKVHLYNV-------W 141 (184)
Q Consensus 95 --------------------------~~~e~~a~gL~~~gi~~~vih~~~p~~~r~~~~~~f~~~~~~v~va-------~ 141 (184)
..|+.++..|...|+++.++||++||..|..+...|++|++.|+|| +
T Consensus 258 ~~k~~~L~~ll~~~~~~~~IVF~~tk~~~~~l~~~l~~~g~~~~~lhG~l~q~~R~~~l~~F~~g~~~vLVaTDvaaRGi 337 (513)
T COG0513 258 EEKLELLLKLLKDEDEGRVIVFVRTKRLVEELAESLRKRGFKVAALHGDLPQEERDRALEKFKDGELRVLVATDVAARGL 337 (513)
T ss_pred HHHHHHHHHHHhcCCCCeEEEEeCcHHHHHHHHHHHHHCCCeEEEecCCCCHHHHHHHHHHHHcCCCCEEEEechhhccC
Confidence 4688899999999999999999999999999999999999999999 6
Q ss_pred ecCCccEEEecCCCCCcccccccccc-ccCCccc
Q psy437 142 KIQWKRIIWIHSLVLIKPDYLPPILD-LRLGRED 174 (184)
Q Consensus 142 D~~~vr~v~~~~~p~~~e~y~~~i~~-~~~~r~~ 174 (184)
|+|+|.+|+|||+|.+.|.|+|||++ +|+||.+
T Consensus 338 Di~~v~~VinyD~p~~~e~yvHRiGRTgRaG~~G 371 (513)
T COG0513 338 DIPDVSHVINYDLPLDPEDYVHRIGRTGRAGRKG 371 (513)
T ss_pred CccccceeEEccCCCCHHHheeccCccccCCCCC
Confidence 99999999999999999999999987 3777653
No 15
>KOG0331|consensus
Probab=99.82 E-value=9.8e-20 Score=154.75 Aligned_cols=165 Identities=13% Similarity=0.159 Sum_probs=120.0
Q ss_pred CeEEEEEEccCh------HHHHHHHHHhh-cCCCcEEEEeccH-HHHHHHHHHHHhCCCeeEEecCC-------------
Q psy437 9 NLKYEILPKKNV------LKEVISLIKAK-YSGQSGIVYCLTR-KECDSVAAALAQERINAISYHAG------------- 67 (184)
Q Consensus 9 Nl~y~v~~~~~k------~~~L~~~l~~~-~~~~~~IIf~~tr-~~~e~la~~L~~~gi~~~~~hg~------------- 67 (184)
.+.|.|..+.+. ...+..+|.+. .+..++|.|..|- +.+..+|..+...-+.+...+-.
T Consensus 239 ~v~ylVLDEADrMldmGFe~qI~~Il~~i~~~~rQtlm~saTwp~~v~~lA~~fl~~~~~i~ig~~~~~~a~~~i~qive 318 (519)
T KOG0331|consen 239 RVTYLVLDEADRMLDMGFEPQIRKILSQIPRPDRQTLMFSATWPKEVRQLAEDFLNNPIQINVGNKKELKANHNIRQIVE 318 (519)
T ss_pred ceeEEEeccHHhhhccccHHHHHHHHHhcCCCcccEEEEeeeccHHHHHHHHHHhcCceEEEecchhhhhhhcchhhhhh
Confidence 466777765431 23444455442 1233688887774 46777887776532222222110
Q ss_pred -CCHHHHH----HHHHHHh-ccCceEEEEEeecccHHHHHHHHHhcCCcEEEeeCCCChHHHHHHHHHhhCCCceEEEE-
Q psy437 68 -LADKLRN----EVQMKWI-SNKVHVGHWTVVSKECDSVAAALAQERINAISYHAGLADKLRNEVQMKWISNKVHLYNV- 140 (184)
Q Consensus 68 -l~~~~R~----~~~~~f~-~g~~~vlVaT~tr~~~e~~a~gL~~~gi~~~vih~~~p~~~r~~~~~~f~~~~~~v~va- 140 (184)
.+..++. .+++... ..+.++||+|.+++.|+.+++.|...+++|.+||+|.+|+.|+.++..|++|+..|+||
T Consensus 319 ~~~~~~K~~~l~~lL~~~~~~~~~KvIIFc~tkr~~~~l~~~l~~~~~~a~~iHGd~sQ~eR~~~L~~FreG~~~vLVAT 398 (519)
T KOG0331|consen 319 VCDETAKLRKLGKLLEDISSDSEGKVIIFCETKRTCDELARNLRRKGWPAVAIHGDKSQSERDWVLKGFREGKSPVLVAT 398 (519)
T ss_pred hcCHHHHHHHHHHHHHHHhccCCCcEEEEecchhhHHHHHHHHHhcCcceeeecccccHHHHHHHHHhcccCCcceEEEc
Confidence 1122222 3344444 23458999999999999999999999999999999999999999999999999999999
Q ss_pred ------EecCCccEEEecCCCCCccccccccccc-cCCcc
Q psy437 141 ------WKIQWKRIIWIHSLVLIKPDYLPPILDL-RLGRE 173 (184)
Q Consensus 141 ------~D~~~vr~v~~~~~p~~~e~y~~~i~~~-~~~r~ 173 (184)
+|+|+|++|||||+|.+.|+|+||++++ |+|+.
T Consensus 399 dVAaRGLDi~dV~lVInydfP~~vEdYVHRiGRTGRa~~~ 438 (519)
T KOG0331|consen 399 DVAARGLDVPDVDLVINYDFPNNVEDYVHRIGRTGRAGKK 438 (519)
T ss_pred ccccccCCCccccEEEeCCCCCCHHHHHhhcCccccCCCC
Confidence 6999999999999999999999999763 55543
No 16
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=99.82 E-value=3.4e-19 Score=162.23 Aligned_cols=87 Identities=23% Similarity=0.296 Sum_probs=80.4
Q ss_pred EEEEeecccHHHHHHHHHhcCCcEEEeeCCCChHHHHHHHHHhhCCCceEEEE-------EecCCccEEEecCCCCCccc
Q psy437 88 GHWTVVSKECDSVAAALAQERINAISYHAGLADKLRNEVQMKWISNKVHLYNV-------WKIQWKRIIWIHSLVLIKPD 160 (184)
Q Consensus 88 lVaT~tr~~~e~~a~gL~~~gi~~~vih~~~p~~~r~~~~~~f~~~~~~v~va-------~D~~~vr~v~~~~~p~~~e~ 160 (184)
||||.+|++||.+|..|...|+.+..||+||++..|..+|+.|..|++.|+|| +|+|+||+||||++|++.++
T Consensus 684 IIYC~SRke~E~LAe~L~~~Gika~~YHAGLs~eeR~~vqe~F~~Gei~VLVATdAFGMGIDkPDVR~VIHydlPkSiEs 763 (1195)
T PLN03137 684 IIYCLSRMDCEKVAERLQEFGHKAAFYHGSMDPAQRAFVQKQWSKDEINIICATVAFGMGINKPDVRFVIHHSLPKSIEG 763 (1195)
T ss_pred eeEeCchhHHHHHHHHHHHCCCCeeeeeCCCCHHHHHHHHHHHhcCCCcEEEEechhhcCCCccCCcEEEEcCCCCCHHH
Confidence 56666668899999999999999999999999999999999999999999999 59999999999999999999
Q ss_pred cccccccccCCccccc
Q psy437 161 YLPPILDLRLGREDIR 176 (184)
Q Consensus 161 y~~~i~~~~~~r~~~~ 176 (184)
|+||+ +|+||++.+
T Consensus 764 YyQri--GRAGRDG~~ 777 (1195)
T PLN03137 764 YHQEC--GRAGRDGQR 777 (1195)
T ss_pred HHhhh--cccCCCCCC
Confidence 99999 588887544
No 17
>PTZ00110 helicase; Provisional
Probab=99.80 E-value=4.7e-19 Score=154.47 Aligned_cols=115 Identities=12% Similarity=0.137 Sum_probs=102.7
Q ss_pred EEEEccChHHHHHHHHHhhc-CCCcEEEEeccHHHHHHHHHHHHhCCCeeEEecCCCCHHHHHHHHHHHhccCceEEEEE
Q psy437 13 EILPKKNVLKEVISLIKAKY-SGQSGIVYCLTRKECDSVAAALAQERINAISYHAGLADKLRNEVQMKWISNKVHVGHWT 91 (184)
Q Consensus 13 ~v~~~~~k~~~L~~~l~~~~-~~~~~IIf~~tr~~~e~la~~L~~~gi~~~~~hg~l~~~~R~~~~~~f~~g~~~vlVaT 91 (184)
.+.....|...|.+++.... ...++||||+|++.|+.++..|...|+++..+||++++++|..++++|++|+.+|||||
T Consensus 355 ~~~~~~~k~~~L~~ll~~~~~~~~k~LIF~~t~~~a~~l~~~L~~~g~~~~~ihg~~~~~eR~~il~~F~~G~~~ILVaT 434 (545)
T PTZ00110 355 FVVEEHEKRGKLKMLLQRIMRDGDKILIFVETKKGADFLTKELRLDGWPALCIHGDKKQEERTWVLNEFKTGKSPIMIAT 434 (545)
T ss_pred EEEechhHHHHHHHHHHHhcccCCeEEEEecChHHHHHHHHHHHHcCCcEEEEECCCcHHHHHHHHHHHhcCCCcEEEEc
Confidence 33444457788888776543 46789999999999999999999999999999999999999999999999999999999
Q ss_pred eecccHHHHHHHHHhcCCcEEEeeCCCChHHHHHHHHHhhCCC
Q psy437 92 VVSKECDSVAAALAQERINAISYHAGLADKLRNEVQMKWISNK 134 (184)
Q Consensus 92 ~tr~~~e~~a~gL~~~gi~~~vih~~~p~~~r~~~~~~f~~~~ 134 (184)
+ .+++|||.++++ +|||+|+|.+..+|+||..|.|.
T Consensus 435 d------v~~rGIDi~~v~-~VI~~d~P~s~~~yvqRiGRtGR 470 (545)
T PTZ00110 435 D------VASRGLDVKDVK-YVINFDFPNQIEDYVHRIGRTGR 470 (545)
T ss_pred c------hhhcCCCcccCC-EEEEeCCCCCHHHHHHHhccccc
Confidence 9 889999999999 99999999999999999976543
No 18
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=99.80 E-value=3.8e-19 Score=152.25 Aligned_cols=109 Identities=23% Similarity=0.305 Sum_probs=100.5
Q ss_pred cChHHHHHHHHHhhcCCCcEEEEeccHHHHHHHHHHHHhCCCeeEEecCCCCHHHHHHHHHHHhccCceEEEEEeecccH
Q psy437 18 KNVLKEVISLIKAKYSGQSGIVYCLTRKECDSVAAALAQERINAISYHAGLADKLRNEVQMKWISNKVHVGHWTVVSKEC 97 (184)
Q Consensus 18 ~~k~~~L~~~l~~~~~~~~~IIf~~tr~~~e~la~~L~~~gi~~~~~hg~l~~~~R~~~~~~f~~g~~~vlVaT~tr~~~ 97 (184)
..|...|..++... .+.++||||+|++.++.+++.|...|+.+..+||+|++.+|..+++.|++|+.++||||+
T Consensus 227 ~~k~~~l~~ll~~~-~~~~~lVF~~t~~~~~~l~~~L~~~~~~v~~~hg~~~~~eR~~~l~~F~~g~~~vLVaTd----- 300 (460)
T PRK11776 227 DERLPALQRLLLHH-QPESCVVFCNTKKECQEVADALNAQGFSALALHGDLEQRDRDQVLVRFANRSCSVLVATD----- 300 (460)
T ss_pred HHHHHHHHHHHHhc-CCCceEEEECCHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEec-----
Confidence 34788888888653 667899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCcEEEeeCCCChHHHHHHHHHhhCCC
Q psy437 98 DSVAAALAQERINAISYHAGLADKLRNEVQMKWISNK 134 (184)
Q Consensus 98 e~~a~gL~~~gi~~~vih~~~p~~~r~~~~~~f~~~~ 134 (184)
.+++|+|.++++ +|||+|+|.+...|+||..|.|.
T Consensus 301 -v~~rGiDi~~v~-~VI~~d~p~~~~~yiqR~GRtGR 335 (460)
T PRK11776 301 -VAARGLDIKALE-AVINYELARDPEVHVHRIGRTGR 335 (460)
T ss_pred -ccccccchhcCC-eEEEecCCCCHhHhhhhcccccC
Confidence 889999999999 99999999999999999866543
No 19
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=99.80 E-value=2.1e-19 Score=152.40 Aligned_cols=108 Identities=15% Similarity=0.187 Sum_probs=99.7
Q ss_pred ChHHHHHHHHHhhcCCCcEEEEeccHHHHHHHHHHHHhCCCeeEEecCCCCHHHHHHHHHHHhccCceEEEEEeecccHH
Q psy437 19 NVLKEVISLIKAKYSGQSGIVYCLTRKECDSVAAALAQERINAISYHAGLADKLRNEVQMKWISNKVHVGHWTVVSKECD 98 (184)
Q Consensus 19 ~k~~~L~~~l~~~~~~~~~IIf~~tr~~~e~la~~L~~~gi~~~~~hg~l~~~~R~~~~~~f~~g~~~vlVaT~tr~~~e 98 (184)
.|...|..++... ...++||||+|+..|+.++..|...|+++..+||+|++++|..++++|++|+++|||||+
T Consensus 241 ~k~~~l~~ll~~~-~~~~~lVF~~t~~~~~~l~~~L~~~g~~v~~lhg~~~~~~R~~~l~~F~~g~~~vLVaTd------ 313 (423)
T PRK04837 241 EKMRLLQTLIEEE-WPDRAIIFANTKHRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILEEFTRGDLDILVATD------ 313 (423)
T ss_pred HHHHHHHHHHHhc-CCCeEEEEECCHHHHHHHHHHHHhCCCcEEEecCCCChhHHHHHHHHHHcCCCcEEEEec------
Confidence 4777888887653 567899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCcEEEeeCCCChHHHHHHHHHhhCCC
Q psy437 99 SVAAALAQERINAISYHAGLADKLRNEVQMKWISNK 134 (184)
Q Consensus 99 ~~a~gL~~~gi~~~vih~~~p~~~r~~~~~~f~~~~ 134 (184)
.+++|+|.++++ +|||+|+|.+..+|+||..+.|.
T Consensus 314 v~~rGiDip~v~-~VI~~d~P~s~~~yiqR~GR~gR 348 (423)
T PRK04837 314 VAARGLHIPAVT-HVFNYDLPDDCEDYVHRIGRTGR 348 (423)
T ss_pred hhhcCCCccccC-EEEEeCCCCchhheEeccccccC
Confidence 889999999999 99999999999999999976543
No 20
>KOG0332|consensus
Probab=99.79 E-value=2.6e-19 Score=145.16 Aligned_cols=115 Identities=12% Similarity=0.142 Sum_probs=102.2
Q ss_pred EEEEEcc-ChHHHHHHHHHhhcCCCcEEEEeccHHHHHHHHHHHHhCCCeeEEecCCCCHHHHHHHHHHHhccCceEEEE
Q psy437 12 YEILPKK-NVLKEVISLIKAKYSGQSGIVYCLTRKECDSVAAALAQERINAISYHAGLADKLRNEVQMKWISNKVHVGHW 90 (184)
Q Consensus 12 y~v~~~~-~k~~~L~~~l~~~~~~~~~IIf~~tr~~~e~la~~L~~~gi~~~~~hg~l~~~~R~~~~~~f~~g~~~vlVa 90 (184)
|..+..+ +|++.|.+++.- ..-+++||||.|++.+.+++..|.+.|..+..+||+|.-++|..+++.|+.|..+|||+
T Consensus 308 yv~C~~~~~K~~~l~~lyg~-~tigqsiIFc~tk~ta~~l~~~m~~~Gh~V~~l~G~l~~~~R~~ii~~Fr~g~~kVLit 386 (477)
T KOG0332|consen 308 YVLCACRDDKYQALVNLYGL-LTIGQSIIFCHTKATAMWLYEEMRAEGHQVSLLHGDLTVEQRAAIIDRFREGKEKVLIT 386 (477)
T ss_pred eeeccchhhHHHHHHHHHhh-hhhhheEEEEeehhhHHHHHHHHHhcCceeEEeeccchhHHHHHHHHHHhcCcceEEEE
Confidence 5555544 599999997643 36789999999999999999999999999999999999999999999999999999999
Q ss_pred EeecccHHHHHHHHHhcCCcEEEeeCCCCh------HHHHHHHHHhhCCC
Q psy437 91 TVVSKECDSVAAALAQERINAISYHAGLAD------KLRNEVQMKWISNK 134 (184)
Q Consensus 91 T~tr~~~e~~a~gL~~~gi~~~vih~~~p~------~~r~~~~~~f~~~~ 134 (184)
|+ ++|||+|.+.++ .|+|||+|- +.+.|+||..+.|.
T Consensus 387 Tn------V~ARGiDv~qVs-~VvNydlP~~~~~~pD~etYlHRiGRtGR 429 (477)
T KOG0332|consen 387 TN------VCARGIDVAQVS-VVVNYDLPVKYTGEPDYETYLHRIGRTGR 429 (477)
T ss_pred ec------hhhcccccceEE-EEEecCCccccCCCCCHHHHHHHhccccc
Confidence 99 899999999999 999999995 56788888877664
No 21
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=99.79 E-value=7.5e-19 Score=150.34 Aligned_cols=108 Identities=16% Similarity=0.120 Sum_probs=97.6
Q ss_pred ChHHHHHHHHHhhcCCCcEEEEeccHHHHHHHHHHHHhCCCeeEEecCCCCHHHHHHHHHHHhccCceEEEEEeecccHH
Q psy437 19 NVLKEVISLIKAKYSGQSGIVYCLTRKECDSVAAALAQERINAISYHAGLADKLRNEVQMKWISNKVHVGHWTVVSKECD 98 (184)
Q Consensus 19 ~k~~~L~~~l~~~~~~~~~IIf~~tr~~~e~la~~L~~~gi~~~~~hg~l~~~~R~~~~~~f~~g~~~vlVaT~tr~~~e 98 (184)
.+...|..++.. ....++||||+|+..++.+++.|...++++..+||+|++++|..++++|++|+++|||||+
T Consensus 231 ~k~~~l~~l~~~-~~~~~~lVF~~t~~~~~~l~~~L~~~g~~~~~lhg~~~~~~R~~~l~~F~~g~~~iLVaTd------ 303 (456)
T PRK10590 231 RKRELLSQMIGK-GNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRVLVATD------ 303 (456)
T ss_pred HHHHHHHHHHHc-CCCCcEEEEcCcHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHcCCCcEEEEcc------
Confidence 455566665644 2557899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCcEEEeeCCCChHHHHHHHHHhhCCC
Q psy437 99 SVAAALAQERINAISYHAGLADKLRNEVQMKWISNK 134 (184)
Q Consensus 99 ~~a~gL~~~gi~~~vih~~~p~~~r~~~~~~f~~~~ 134 (184)
.+++|+|.++++ +|||+++|.+..+|+|+..+.|.
T Consensus 304 v~~rGiDip~v~-~VI~~~~P~~~~~yvqR~GRaGR 338 (456)
T PRK10590 304 IAARGLDIEELP-HVVNYELPNVPEDYVHRIGRTGR 338 (456)
T ss_pred HHhcCCCcccCC-EEEEeCCCCCHHHhhhhcccccc
Confidence 889999999999 99999999999999999977653
No 22
>KOG0341|consensus
Probab=99.78 E-value=3.8e-19 Score=145.05 Aligned_cols=106 Identities=12% Similarity=0.157 Sum_probs=97.8
Q ss_pred hHHHHHHHHHhhcCCCcEEEEeccHHHHHHHHHHHHhCCCeeEEecCCCCHHHHHHHHHHHhccCceEEEEEeecccHHH
Q psy437 20 VLKEVISLIKAKYSGQSGIVYCLTRKECDSVAAALAQERINAISYHAGLADKLRNEVQMKWISNKVHVGHWTVVSKECDS 99 (184)
Q Consensus 20 k~~~L~~~l~~~~~~~~~IIf~~tr~~~e~la~~L~~~gi~~~~~hg~l~~~~R~~~~~~f~~g~~~vlVaT~tr~~~e~ 99 (184)
|+-.|++.|.+ ..+|.+|||..+.+++.+.++|--.|+.++++|||.+|++|...++.|+.|+-.|||||+ .
T Consensus 409 KiVylLeCLQK--T~PpVLIFaEkK~DVD~IhEYLLlKGVEavaIHGGKDQedR~~ai~afr~gkKDVLVATD------V 480 (610)
T KOG0341|consen 409 KIVYLLECLQK--TSPPVLIFAEKKADVDDIHEYLLLKGVEAVAIHGGKDQEDRHYAIEAFRAGKKDVLVATD------V 480 (610)
T ss_pred hhhhHHHHhcc--CCCceEEEeccccChHHHHHHHHHccceeEEeecCcchhHHHHHHHHHhcCCCceEEEec------c
Confidence 55566677755 678999999999999999999999999999999999999999999999999999999999 8
Q ss_pred HHHHHHhcCCcEEEeeCCCChHHHHHHHHHhhCCC
Q psy437 100 VAAALAQERINAISYHAGLADKLRNEVQMKWISNK 134 (184)
Q Consensus 100 ~a~gL~~~gi~~~vih~~~p~~~r~~~~~~f~~~~ 134 (184)
++.|||.++|. +|||||||.+.++|+||..+.|.
T Consensus 481 ASKGLDFp~iq-HVINyDMP~eIENYVHRIGRTGR 514 (610)
T KOG0341|consen 481 ASKGLDFPDIQ-HVINYDMPEEIENYVHRIGRTGR 514 (610)
T ss_pred hhccCCCccch-hhccCCChHHHHHHHHHhcccCC
Confidence 89999999999 99999999999999999976553
No 23
>KOG0333|consensus
Probab=99.78 E-value=8.9e-19 Score=147.13 Aligned_cols=103 Identities=16% Similarity=0.145 Sum_probs=93.9
Q ss_pred HHHHHHHHHHhcc-CceEEEEEeecccHHHHHHHHHhcCCcEEEeeCCCChHHHHHHHHHhhCCCceEEEE-------Ee
Q psy437 71 KLRNEVQMKWISN-KVHVGHWTVVSKECDSVAAALAQERINAISYHAGLADKLRNEVQMKWISNKVHLYNV-------WK 142 (184)
Q Consensus 71 ~~R~~~~~~f~~g-~~~vlVaT~tr~~~e~~a~gL~~~gi~~~vih~~~p~~~r~~~~~~f~~~~~~v~va-------~D 142 (184)
+++.++++-..++ +-++||+.++++.||.+|.+|++.|+.++.+|++-.++.|.++++.|++|...|+|| +|
T Consensus 503 ~k~kkL~eil~~~~~ppiIIFvN~kk~~d~lAk~LeK~g~~~~tlHg~k~qeQRe~aL~~fr~~t~dIlVaTDvAgRGID 582 (673)
T KOG0333|consen 503 EKRKKLIEILESNFDPPIIIFVNTKKGADALAKILEKAGYKVTTLHGGKSQEQRENALADFREGTGDILVATDVAGRGID 582 (673)
T ss_pred HHHHHHHHHHHhCCCCCEEEEEechhhHHHHHHHHhhccceEEEeeCCccHHHHHHHHHHHHhcCCCEEEEecccccCCC
Confidence 4477777777665 779999999999999999999999999999999999999999999999999999999 69
Q ss_pred cCCccEEEecCCCCCcccccccccc-ccCCcc
Q psy437 143 IQWKRIIWIHSLVLIKPDYLPPILD-LRLGRE 173 (184)
Q Consensus 143 ~~~vr~v~~~~~p~~~e~y~~~i~~-~~~~r~ 173 (184)
+|||++|+|||+++++++|+|||++ +|+|-.
T Consensus 583 IpnVSlVinydmaksieDYtHRIGRTgRAGk~ 614 (673)
T KOG0333|consen 583 IPNVSLVINYDMAKSIEDYTHRIGRTGRAGKS 614 (673)
T ss_pred CCccceeeecchhhhHHHHHHHhccccccccC
Confidence 9999999999999999999999976 366654
No 24
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=99.78 E-value=1.3e-18 Score=152.32 Aligned_cols=109 Identities=14% Similarity=0.153 Sum_probs=100.1
Q ss_pred cChHHHHHHHHHhhcCCCcEEEEeccHHHHHHHHHHHHhCCCeeEEecCCCCHHHHHHHHHHHhccCceEEEEEeecccH
Q psy437 18 KNVLKEVISLIKAKYSGQSGIVYCLTRKECDSVAAALAQERINAISYHAGLADKLRNEVQMKWISNKVHVGHWTVVSKEC 97 (184)
Q Consensus 18 ~~k~~~L~~~l~~~~~~~~~IIf~~tr~~~e~la~~L~~~gi~~~~~hg~l~~~~R~~~~~~f~~g~~~vlVaT~tr~~~ 97 (184)
..|...|..++... ...++||||+|+..|+.+++.|...|+.+..+||+|++.+|..+++.|++|+.+|||||+
T Consensus 242 ~~k~~~L~~ll~~~-~~~k~LVF~nt~~~ae~l~~~L~~~g~~v~~lhg~l~~~eR~~il~~Fr~G~~~VLVaTd----- 315 (572)
T PRK04537 242 EEKQTLLLGLLSRS-EGARTMVFVNTKAFVERVARTLERHGYRVGVLSGDVPQKKRESLLNRFQKGQLEILVATD----- 315 (572)
T ss_pred HHHHHHHHHHHhcc-cCCcEEEEeCCHHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEeh-----
Confidence 34777788877653 667899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCcEEEeeCCCChHHHHHHHHHhhCCC
Q psy437 98 DSVAAALAQERINAISYHAGLADKLRNEVQMKWISNK 134 (184)
Q Consensus 98 e~~a~gL~~~gi~~~vih~~~p~~~r~~~~~~f~~~~ 134 (184)
.+++|||.++++ +|||+++|.+..+|+||..+.|.
T Consensus 316 -v~arGIDip~V~-~VInyd~P~s~~~yvqRiGRaGR 350 (572)
T PRK04537 316 -VAARGLHIDGVK-YVYNYDLPFDAEDYVHRIGRTAR 350 (572)
T ss_pred -hhhcCCCccCCC-EEEEcCCCCCHHHHhhhhccccc
Confidence 899999999999 99999999999999999976543
No 25
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=99.77 E-value=2.9e-18 Score=145.78 Aligned_cols=121 Identities=15% Similarity=0.133 Sum_probs=104.0
Q ss_pred CCCCeEEEEEEc---cChHHHHHHHHHhhcCCCcEEEEeccHHHHHHHHHHHHhCCCeeEEecCCCCHHHHHHHHHHHhc
Q psy437 6 NRANLKYEILPK---KNVLKEVISLIKAKYSGQSGIVYCLTRKECDSVAAALAQERINAISYHAGLADKLRNEVQMKWIS 82 (184)
Q Consensus 6 ~R~Nl~y~v~~~---~~k~~~L~~~l~~~~~~~~~IIf~~tr~~~e~la~~L~~~gi~~~~~hg~l~~~~R~~~~~~f~~ 82 (184)
.+.++....... ..|...|..++... ...++||||+|++.++.++..|...|+++..+||+|++.+|..+++.|++
T Consensus 215 ~~~~i~~~~~~~~~~~~k~~~l~~l~~~~-~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~l~g~~~~~~R~~~l~~f~~ 293 (434)
T PRK11192 215 ERKKIHQWYYRADDLEHKTALLCHLLKQP-EVTRSIVFVRTRERVHELAGWLRKAGINCCYLEGEMVQAKRNEAIKRLTD 293 (434)
T ss_pred cccCceEEEEEeCCHHHHHHHHHHHHhcC-CCCeEEEEeCChHHHHHHHHHHHhCCCCEEEecCCCCHHHHHHHHHHHhC
Confidence 345554333332 24777777777542 56789999999999999999999999999999999999999999999999
Q ss_pred cCceEEEEEeecccHHHHHHHHHhcCCcEEEeeCCCChHHHHHHHHHhhCCC
Q psy437 83 NKVHVGHWTVVSKECDSVAAALAQERINAISYHAGLADKLRNEVQMKWISNK 134 (184)
Q Consensus 83 g~~~vlVaT~tr~~~e~~a~gL~~~gi~~~vih~~~p~~~r~~~~~~f~~~~ 134 (184)
|+++|||||+ .+++|+|.++++ +|||+++|.+...|+||..|.|.
T Consensus 294 G~~~vLVaTd------~~~~GiDip~v~-~VI~~d~p~s~~~yiqr~GR~gR 338 (434)
T PRK11192 294 GRVNVLVATD------VAARGIDIDDVS-HVINFDMPRSADTYLHRIGRTGR 338 (434)
T ss_pred CCCcEEEEcc------ccccCccCCCCC-EEEEECCCCCHHHHhhccccccc
Confidence 9999999999 889999999999 99999999999999999976543
No 26
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.77 E-value=1.2e-17 Score=143.32 Aligned_cols=86 Identities=24% Similarity=0.276 Sum_probs=81.0
Q ss_pred EEEEeecccHHHHHHHHHhcCCcEEEeeCCCChHHHHHHHHHhhCCCceEEEE-------EecCCccEEEecCCCCCccc
Q psy437 88 GHWTVVSKECDSVAAALAQERINAISYHAGLADKLRNEVQMKWISNKVHLYNV-------WKIQWKRIIWIHSLVLIKPD 160 (184)
Q Consensus 88 lVaT~tr~~~e~~a~gL~~~gi~~~vih~~~p~~~r~~~~~~f~~~~~~v~va-------~D~~~vr~v~~~~~p~~~e~ 160 (184)
||+|+++++|+.++..|...|+++..||+++|+..|..+++.|++|++.|+|| +|+|+|++|||+++|++.++
T Consensus 230 IIF~~s~~~~e~la~~L~~~g~~~~~~H~~l~~~eR~~i~~~F~~g~~~vLVaT~~~~~GID~p~V~~VI~~~~P~s~~~ 309 (470)
T TIGR00614 230 IIYCPSRKKSEQVTASLQNLGIAAGAYHAGLEISARDDVHHKFQRDEIQVVVATVAFGMGINKPDVRFVIHYSLPKSMES 309 (470)
T ss_pred EEEECcHHHHHHHHHHHHhcCCCeeEeeCCCCHHHHHHHHHHHHcCCCcEEEEechhhccCCcccceEEEEeCCCCCHHH
Confidence 88888889999999999999999999999999999999999999999999999 59999999999999999999
Q ss_pred cccccccccCCcccc
Q psy437 161 YLPPILDLRLGREDI 175 (184)
Q Consensus 161 y~~~i~~~~~~r~~~ 175 (184)
|+|++ +|+||++.
T Consensus 310 y~Qr~--GRaGR~G~ 322 (470)
T TIGR00614 310 YYQES--GRAGRDGL 322 (470)
T ss_pred HHhhh--cCcCCCCC
Confidence 99999 58888653
No 27
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=99.77 E-value=3.3e-18 Score=151.06 Aligned_cols=120 Identities=16% Similarity=0.189 Sum_probs=105.4
Q ss_pred CCCCeE--EEEEEccChHHHHHHHHHhhcCCCcEEEEeccHHHHHHHHHHHHhCCCeeEEecCCCCHHHHHHHHHHHhcc
Q psy437 6 NRANLK--YEILPKKNVLKEVISLIKAKYSGQSGIVYCLTRKECDSVAAALAQERINAISYHAGLADKLRNEVQMKWISN 83 (184)
Q Consensus 6 ~R~Nl~--y~v~~~~~k~~~L~~~l~~~~~~~~~IIf~~tr~~~e~la~~L~~~gi~~~~~hg~l~~~~R~~~~~~f~~g 83 (184)
.++++. |.......|...|..+|... ...++||||+|+..++.+++.|...|+.+..+||+|++.+|..++++|++|
T Consensus 216 ~~~~i~q~~~~v~~~~k~~~L~~~L~~~-~~~~~IVF~~tk~~a~~l~~~L~~~g~~~~~lhgd~~q~~R~~il~~Fr~G 294 (629)
T PRK11634 216 TRPDISQSYWTVWGMRKNEALVRFLEAE-DFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDG 294 (629)
T ss_pred cCCceEEEEEEechhhHHHHHHHHHHhc-CCCCEEEEeccHHHHHHHHHHHHhCCCCEEEeeCCCCHHHHHHHHHHHhCC
Confidence 355654 33333345788888888653 567899999999999999999999999999999999999999999999999
Q ss_pred CceEEEEEeecccHHHHHHHHHhcCCcEEEeeCCCChHHHHHHHHHhhCC
Q psy437 84 KVHVGHWTVVSKECDSVAAALAQERINAISYHAGLADKLRNEVQMKWISN 133 (184)
Q Consensus 84 ~~~vlVaT~tr~~~e~~a~gL~~~gi~~~vih~~~p~~~r~~~~~~f~~~ 133 (184)
+.+|||||+ .+++|+|.++++ +|||+++|.+.+.|+|+..+.|
T Consensus 295 ~~~ILVATd------v~arGIDip~V~-~VI~~d~P~~~e~yvqRiGRtG 337 (629)
T PRK11634 295 RLDILIATD------VAARGLDVERIS-LVVNYDIPMDSESYVHRIGRTG 337 (629)
T ss_pred CCCEEEEcc------hHhcCCCcccCC-EEEEeCCCCCHHHHHHHhcccc
Confidence 999999999 999999999999 9999999999999999997654
No 28
>KOG0340|consensus
Probab=99.77 E-value=2.1e-18 Score=139.12 Aligned_cols=113 Identities=13% Similarity=0.176 Sum_probs=99.5
Q ss_pred EEEEEccChHHHHHHHHHhhc--CCCcEEEEeccHHHHHHHHHHHHhCCCeeEEecCCCCHHHHHHHHHHHhccCceEEE
Q psy437 12 YEILPKKNVLKEVISLIKAKY--SGQSGIVYCLTRKECDSVAAALAQERINAISYHAGLADKLRNEVQMKWISNKVHVGH 89 (184)
Q Consensus 12 y~v~~~~~k~~~L~~~l~~~~--~~~~~IIf~~tr~~~e~la~~L~~~gi~~~~~hg~l~~~~R~~~~~~f~~g~~~vlV 89 (184)
|..++...|...|...|.... ...+++||++|...|+.++..|...++.+..+||-|+|++|...+.+|+++..++||
T Consensus 230 yI~~~~~vkdaYLv~~Lr~~~~~~~~simIFvnttr~cQ~l~~~l~~le~r~~~lHs~m~Q~eR~~aLsrFrs~~~~ili 309 (442)
T KOG0340|consen 230 YILVSIDVKDAYLVHLLRDFENKENGSIMIFVNTTRECQLLSMTLKNLEVRVVSLHSQMPQKERLAALSRFRSNAARILI 309 (442)
T ss_pred eeecchhhhHHHHHHHHhhhhhccCceEEEEeehhHHHHHHHHHHhhhceeeeehhhcchHHHHHHHHHHHhhcCccEEE
Confidence 334444446667777775432 357799999999999999999999999999999999999999999999999999999
Q ss_pred EEeecccHHHHHHHHHhcCCcEEEeeCCCChHHHHHHHHHhh
Q psy437 90 WTVVSKECDSVAAALAQERINAISYHAGLADKLRNEVQMKWI 131 (184)
Q Consensus 90 aT~tr~~~e~~a~gL~~~gi~~~vih~~~p~~~r~~~~~~f~ 131 (184)
||+ ++++|||+|.+. +|+|+++|.++++|+||..+
T Consensus 310 aTD------VAsRGLDIP~V~-LVvN~diPr~P~~yiHRvGR 344 (442)
T KOG0340|consen 310 ATD------VASRGLDIPTVE-LVVNHDIPRDPKDYIHRVGR 344 (442)
T ss_pred Eec------hhhcCCCCCcee-EEEecCCCCCHHHHHHhhcc
Confidence 999 999999999999 99999999999999999854
No 29
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=99.77 E-value=1.7e-17 Score=146.11 Aligned_cols=140 Identities=18% Similarity=0.233 Sum_probs=121.5
Q ss_pred CCCcEEEEeccHHHHHHHHHHHHhCCCeeEEecCCCCHHHHHHHHHHHhccCceE-------------------------
Q psy437 33 SGQSGIVYCLTRKECDSVAAALAQERINAISYHAGLADKLRNEVQMKWISNKVHV------------------------- 87 (184)
Q Consensus 33 ~~~~~IIf~~tr~~~e~la~~L~~~gi~~~~~hg~l~~~~R~~~~~~f~~g~~~v------------------------- 87 (184)
..+.++|.+|++..+++....|...|+++..+||+++..++..++....+|..++
T Consensus 52 ~~g~~lVisPl~sL~~dq~~~l~~~gi~~~~~~s~~~~~~~~~~~~~l~~~~~~il~~tpe~l~~~~~~~~l~~~~l~~i 131 (591)
T TIGR01389 52 LKGLTVVISPLISLMKDQVDQLRAAGVAAAYLNSTLSAKEQQDIEKALVNGELKLLYVAPERLEQDYFLNMLQRIPIALV 131 (591)
T ss_pred cCCcEEEEcCCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhCCCCCEEEEChhHhcChHHHHHHhcCCCCEE
Confidence 3467899999999999999999999999999999988777666554444433333
Q ss_pred --------------------------------------------------------------------------------
Q psy437 88 -------------------------------------------------------------------------------- 87 (184)
Q Consensus 88 -------------------------------------------------------------------------------- 87 (184)
T Consensus 132 ViDEaH~i~~~g~~frp~y~~l~~l~~~~~~~~vi~lTAT~~~~~~~~i~~~l~~~~~~~~~~~~~r~nl~~~v~~~~~~ 211 (591)
T TIGR01389 132 AVDEAHCVSQWGHDFRPEYQRLGSLAERFPQVPRIALTATADAETRQDIRELLRLADANEFITSFDRPNLRFSVVKKNNK 211 (591)
T ss_pred EEeCCcccccccCccHHHHHHHHHHHHhCCCCCEEEEEeCCCHHHHHHHHHHcCCCCCCeEecCCCCCCcEEEEEeCCCH
Confidence
Q ss_pred ----------------EEEEeecccHHHHHHHHHhcCCcEEEeeCCCChHHHHHHHHHhhCCCceEEEE-------EecC
Q psy437 88 ----------------GHWTVVSKECDSVAAALAQERINAISYHAGLADKLRNEVQMKWISNKVHLYNV-------WKIQ 144 (184)
Q Consensus 88 ----------------lVaT~tr~~~e~~a~gL~~~gi~~~vih~~~p~~~r~~~~~~f~~~~~~v~va-------~D~~ 144 (184)
||+++++++|+.+|..|...|+++..||++|++..|..+++.|++|.+.|+|| +|+|
T Consensus 212 ~~~l~~~l~~~~~~~~IIf~~sr~~~e~la~~L~~~g~~~~~~H~~l~~~~R~~i~~~F~~g~~~vlVaT~a~~~GID~p 291 (591)
T TIGR01389 212 QKFLLDYLKKHRGQSGIIYASSRKKVEELAERLESQGISALAYHAGLSNKVRAENQEDFLYDDVKVMVATNAFGMGIDKP 291 (591)
T ss_pred HHHHHHHHHhcCCCCEEEEECcHHHHHHHHHHHHhCCCCEEEEECCCCHHHHHHHHHHHHcCCCcEEEEechhhccCcCC
Confidence 56666667899999999999999999999999999999999999999999999 5999
Q ss_pred CccEEEecCCCCCccccccccccccCCccc
Q psy437 145 WKRIIWIHSLVLIKPDYLPPILDLRLGRED 174 (184)
Q Consensus 145 ~vr~v~~~~~p~~~e~y~~~i~~~~~~r~~ 174 (184)
+|++|+|+++|.+.++|+|++ +|+||++
T Consensus 292 ~v~~VI~~~~p~s~~~y~Q~~--GRaGR~G 319 (591)
T TIGR01389 292 NVRFVIHYDMPGNLESYYQEA--GRAGRDG 319 (591)
T ss_pred CCCEEEEcCCCCCHHHHhhhh--ccccCCC
Confidence 999999999999999999999 5888875
No 30
>KOG0326|consensus
Probab=99.77 E-value=5.3e-19 Score=141.09 Aligned_cols=117 Identities=13% Similarity=0.174 Sum_probs=106.9
Q ss_pred EEEEEEccChHHHHHHHHHhhcCCCcEEEEeccHHHHHHHHHHHHhCCCeeEEecCCCCHHHHHHHHHHHhccCceEEEE
Q psy437 11 KYEILPKKNVLKEVISLIKAKYSGQSGIVYCLTRKECDSVAAALAQERINAISYHAGLADKLRNEVQMKWISNKVHVGHW 90 (184)
Q Consensus 11 ~y~v~~~~~k~~~L~~~l~~~~~~~~~IIf~~tr~~~e~la~~L~~~gi~~~~~hg~l~~~~R~~~~~~f~~g~~~vlVa 90 (184)
||..+....|+..|-.++.+. .-.++||||||...+|.+|..+.+.|++|.++|+.|-++.|..+...|++|.++.|||
T Consensus 300 yYafV~e~qKvhCLntLfskL-qINQsIIFCNS~~rVELLAkKITelGyscyyiHakM~Q~hRNrVFHdFr~G~crnLVc 378 (459)
T KOG0326|consen 300 YYAFVEERQKVHCLNTLFSKL-QINQSIIFCNSTNRVELLAKKITELGYSCYYIHAKMAQEHRNRVFHDFRNGKCRNLVC 378 (459)
T ss_pred heeeechhhhhhhHHHHHHHh-cccceEEEeccchHhHHHHHHHHhccchhhHHHHHHHHhhhhhhhhhhhccccceeee
Confidence 566666667888888887665 6678999999999999999999999999999999999999999999999999999999
Q ss_pred EeecccHHHHHHHHHhcCCcEEEeeCCCChHHHHHHHHHhhCCCc
Q psy437 91 TVVSKECDSVAAALAQERINAISYHAGLADKLRNEVQMKWISNKV 135 (184)
Q Consensus 91 T~tr~~~e~~a~gL~~~gi~~~vih~~~p~~~r~~~~~~f~~~~~ 135 (184)
|+ .+.||+|++.++ +|||+|+|+..++|+||..++|..
T Consensus 379 tD------L~TRGIDiqavN-vVINFDfpk~aEtYLHRIGRsGRF 416 (459)
T KOG0326|consen 379 TD------LFTRGIDIQAVN-VVINFDFPKNAETYLHRIGRSGRF 416 (459)
T ss_pred hh------hhhcccccceee-EEEecCCCCCHHHHHHHccCCccC
Confidence 99 889999999999 999999999999999999988863
No 31
>KOG0335|consensus
Probab=99.75 E-value=4.6e-18 Score=142.77 Aligned_cols=122 Identities=17% Similarity=0.157 Sum_probs=107.7
Q ss_pred CCCCeEEEEEEc--cChHHHHHHHHHhhc---CCC-----cEEEEeccHHHHHHHHHHHHhCCCeeEEecCCCCHHHHHH
Q psy437 6 NRANLKYEILPK--KNVLKEVISLIKAKY---SGQ-----SGIVYCLTRKECDSVAAALAQERINAISYHAGLADKLRNE 75 (184)
Q Consensus 6 ~R~Nl~y~v~~~--~~k~~~L~~~l~~~~---~~~-----~~IIf~~tr~~~e~la~~L~~~gi~~~~~hg~l~~~~R~~ 75 (184)
.++|+...+... ..|...|+++|.+.. ... .++|||.|++.|..++..|...++++..+||..++.+|.+
T Consensus 299 ~~~ni~q~i~~V~~~~kr~~Lldll~~~~~~~~~~~~~~e~tlvFvEt~~~~d~l~~~l~~~~~~~~sIhg~~tq~er~~ 378 (482)
T KOG0335|consen 299 TSENITQKILFVNEMEKRSKLLDLLNKDDGPPSDGEPKWEKTLVFVETKRGADELAAFLSSNGYPAKSIHGDRTQIEREQ 378 (482)
T ss_pred ccccceeEeeeecchhhHHHHHHHhhcccCCcccCCcccceEEEEeeccchhhHHHHHHhcCCCCceeecchhhhhHHHH
Confidence 456776555543 358899999997543 223 6899999999999999999999999999999999999999
Q ss_pred HHHHHhccCceEEEEEeecccHHHHHHHHHhcCCcEEEeeCCCChHHHHHHHHHhhCCC
Q psy437 76 VQMKWISNKVHVGHWTVVSKECDSVAAALAQERINAISYHAGLADKLRNEVQMKWISNK 134 (184)
Q Consensus 76 ~~~~f~~g~~~vlVaT~tr~~~e~~a~gL~~~gi~~~vih~~~p~~~r~~~~~~f~~~~ 134 (184)
.+..|++|..++||||+ .+|||||+++|+ +||+||||.+..+|+||..+.|.
T Consensus 379 al~~Fr~g~~pvlVaT~------VaaRGlDi~~V~-hVInyDmP~d~d~YvHRIGRTGR 430 (482)
T KOG0335|consen 379 ALNDFRNGKAPVLVATN------VAARGLDIPNVK-HVINYDMPADIDDYVHRIGRTGR 430 (482)
T ss_pred HHHHhhcCCcceEEEeh------hhhcCCCCCCCc-eeEEeecCcchhhHHHhcccccc
Confidence 99999999999999999 999999999999 99999999999999999977654
No 32
>KOG0330|consensus
Probab=99.75 E-value=2.2e-17 Score=134.57 Aligned_cols=138 Identities=16% Similarity=0.117 Sum_probs=118.0
Q ss_pred CCCcEEEEeccHHHHHHHHHHHHhC----CCeeEEecCCCCHHHHHHHHHHHhccCceEEEEEeec--------------
Q psy437 33 SGQSGIVYCLTRKECDSVAAALAQE----RINAISYHAGLADKLRNEVQMKWISNKVHVGHWTVVS-------------- 94 (184)
Q Consensus 33 ~~~~~IIf~~tr~~~e~la~~L~~~----gi~~~~~hg~l~~~~R~~~~~~f~~g~~~vlVaT~tr-------------- 94 (184)
....++|.+|||+.|.+|++.+... |+.+..+-||++... +..+.+ .+..|||||+.|
T Consensus 128 ~~~~~lVLtPtRELA~QI~e~fe~Lg~~iglr~~~lvGG~~m~~--q~~~L~--kkPhilVaTPGrL~dhl~~Tkgf~le 203 (476)
T KOG0330|consen 128 KLFFALVLTPTRELAQQIAEQFEALGSGIGLRVAVLVGGMDMML--QANQLS--KKPHILVATPGRLWDHLENTKGFSLE 203 (476)
T ss_pred CCceEEEecCcHHHHHHHHHHHHHhccccCeEEEEEecCchHHH--HHHHhh--cCCCEEEeCcHHHHHHHHhccCccHH
Confidence 4456999999999999999999864 788999999987432 222222 345677777777
Q ss_pred --------------------------------------------------------------------------------
Q psy437 95 -------------------------------------------------------------------------------- 94 (184)
Q Consensus 95 -------------------------------------------------------------------------------- 94 (184)
T Consensus 204 ~lk~LVlDEADrlLd~dF~~~ld~ILk~ip~erqt~LfsATMt~kv~kL~rasl~~p~~v~~s~ky~tv~~lkQ~ylfv~ 283 (476)
T KOG0330|consen 204 QLKFLVLDEADRLLDMDFEEELDYILKVIPRERQTFLFSATMTKKVRKLQRASLDNPVKVAVSSKYQTVDHLKQTYLFVP 283 (476)
T ss_pred HhHHHhhchHHhhhhhhhHHHHHHHHHhcCccceEEEEEeecchhhHHHHhhccCCCeEEeccchhcchHHhhhheEecc
Confidence
Q ss_pred ---------------------------ccHHHHHHHHHhcCCcEEEeeCCCChHHHHHHHHHhhCCCceEEEE-------
Q psy437 95 ---------------------------KECDSVAAALAQERINAISYHAGLADKLRNEVQMKWISNKVHLYNV------- 140 (184)
Q Consensus 95 ---------------------------~~~e~~a~gL~~~gi~~~vih~~~p~~~r~~~~~~f~~~~~~v~va------- 140 (184)
..+..+|--|+..|+.+..+||+|+++.|--..+.|++|...|+|+
T Consensus 284 ~k~K~~yLV~ll~e~~g~s~iVF~~t~~tt~~la~~L~~lg~~a~~LhGqmsq~~Rlg~l~~Fk~~~r~iLv~TDVaSRG 363 (476)
T KOG0330|consen 284 GKDKDTYLVYLLNELAGNSVIVFCNTCNTTRFLALLLRNLGFQAIPLHGQMSQSKRLGALNKFKAGARSILVCTDVASRG 363 (476)
T ss_pred ccccchhHHHHHHhhcCCcEEEEEeccchHHHHHHHHHhcCcceecccchhhHHHHHHHHHHHhccCCcEEEecchhccc
Confidence 4678888899999999999999999999999999999999999999
Q ss_pred EecCCccEEEecCCCCCccccccccccc-cCCccc
Q psy437 141 WKIQWKRIIWIHSLVLIKPDYLPPILDL-RLGRED 174 (184)
Q Consensus 141 ~D~~~vr~v~~~~~p~~~e~y~~~i~~~-~~~r~~ 174 (184)
+|+|.|+.|+|||+|....+|+||++++ |+||.+
T Consensus 364 LDip~Vd~VVNyDiP~~skDYIHRvGRtaRaGrsG 398 (476)
T KOG0330|consen 364 LDIPHVDVVVNYDIPTHSKDYIHRVGRTARAGRSG 398 (476)
T ss_pred CCCCCceEEEecCCCCcHHHHHHHcccccccCCCc
Confidence 6999999999999999999999999984 888863
No 33
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=99.75 E-value=1.1e-17 Score=143.93 Aligned_cols=113 Identities=13% Similarity=0.135 Sum_probs=101.5
Q ss_pred EEEccChHHHHHHHHHhhcCCCcEEEEeccHHHHHHHHHHHHhCCCeeEEecCCCCHHHHHHHHHHHhccCceEEEEEee
Q psy437 14 ILPKKNVLKEVISLIKAKYSGQSGIVYCLTRKECDSVAAALAQERINAISYHAGLADKLRNEVQMKWISNKVHVGHWTVV 93 (184)
Q Consensus 14 v~~~~~k~~~L~~~l~~~~~~~~~IIf~~tr~~~e~la~~L~~~gi~~~~~hg~l~~~~R~~~~~~f~~g~~~vlVaT~t 93 (184)
.....+|...|..++... ...++||||++++.++.+++.|...|+.+..+||++++++|.++++.|++|+.++||||+
T Consensus 316 ~~~~~~k~~~l~~ll~~~-~~~~~IVF~~s~~~~~~l~~~L~~~~~~~~~~~g~~~~~~R~~~~~~Fr~G~~~vLvaT~- 393 (475)
T PRK01297 316 AVAGSDKYKLLYNLVTQN-PWERVMVFANRKDEVRRIEERLVKDGINAAQLSGDVPQHKRIKTLEGFREGKIRVLVATD- 393 (475)
T ss_pred EecchhHHHHHHHHHHhc-CCCeEEEEeCCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHhCCCCcEEEEcc-
Confidence 333445777888877653 556899999999999999999999999999999999999999999999999999999999
Q ss_pred cccHHHHHHHHHhcCCcEEEeeCCCChHHHHHHHHHhhCCC
Q psy437 94 SKECDSVAAALAQERINAISYHAGLADKLRNEVQMKWISNK 134 (184)
Q Consensus 94 r~~~e~~a~gL~~~gi~~~vih~~~p~~~r~~~~~~f~~~~ 134 (184)
.+++|+|.++++ +|||+|+|.+..+|+||..|.|.
T Consensus 394 -----~l~~GIDi~~v~-~VI~~~~P~s~~~y~Qr~GRaGR 428 (475)
T PRK01297 394 -----VAGRGIHIDGIS-HVINFTLPEDPDDYVHRIGRTGR 428 (475)
T ss_pred -----ccccCCcccCCC-EEEEeCCCCCHHHHHHhhCccCC
Confidence 889999999999 99999999999999999976654
No 34
>KOG0342|consensus
Probab=99.75 E-value=4.2e-18 Score=142.00 Aligned_cols=120 Identities=12% Similarity=0.080 Sum_probs=111.2
Q ss_pred CCCCeEEEEEEccChHHHHHHHHHhhcCCCcEEEEeccHHHHHHHHHHHHhCCCeeEEecCCCCHHHHHHHHHHHhccCc
Q psy437 6 NRANLKYEILPKKNVLKEVISLIKAKYSGQSGIVYCLTRKECDSVAAALAQERINAISYHAGLADKLRNEVQMKWISNKV 85 (184)
Q Consensus 6 ~R~Nl~y~v~~~~~k~~~L~~~l~~~~~~~~~IIf~~tr~~~e~la~~L~~~gi~~~~~hg~l~~~~R~~~~~~f~~g~~ 85 (184)
+|-+..|.|.+...++..+..+|+++....+.||||+|...+..+++.|....+++..+||+++|..|..+..+|++.+.
T Consensus 302 e~l~Qgyvv~~~~~~f~ll~~~LKk~~~~~KiiVF~sT~~~vk~~~~lL~~~dlpv~eiHgk~~Q~kRT~~~~~F~kaes 381 (543)
T KOG0342|consen 302 ERLEQGYVVAPSDSRFSLLYTFLKKNIKRYKIIVFFSTCMSVKFHAELLNYIDLPVLEIHGKQKQNKRTSTFFEFCKAES 381 (543)
T ss_pred hcccceEEeccccchHHHHHHHHHHhcCCceEEEEechhhHHHHHHHHHhhcCCchhhhhcCCcccccchHHHHHhhccc
Confidence 45556788988888899999999887555899999999999999999999999999999999999999999999999999
Q ss_pred eEEEEEeecccHHHHHHHHHhcCCcEEEeeCCCChHHHHHHHHHhhC
Q psy437 86 HVGHWTVVSKECDSVAAALAQERINAISYHAGLADKLRNEVQMKWIS 132 (184)
Q Consensus 86 ~vlVaT~tr~~~e~~a~gL~~~gi~~~vih~~~p~~~r~~~~~~f~~ 132 (184)
-||+||+ +.|||||.|+|+ .|+.+|.|.+.++|+||..+.
T Consensus 382 gIL~cTD------VaARGlD~P~V~-~VvQ~~~P~d~~~YIHRvGRT 421 (543)
T KOG0342|consen 382 GILVCTD------VAARGLDIPDVD-WVVQYDPPSDPEQYIHRVGRT 421 (543)
T ss_pred ceEEecc------hhhccCCCCCce-EEEEeCCCCCHHHHHHHhccc
Confidence 9999999 999999999999 999999999999999999654
No 35
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=99.75 E-value=1e-17 Score=145.38 Aligned_cols=110 Identities=17% Similarity=0.208 Sum_probs=98.0
Q ss_pred cChHHHHHHHHHhhc-CCCcEEEEeccHHHHHHHHHHHHh-CCCeeEEecCCCCHHHHHHHHHHHhccCceEEEEEeecc
Q psy437 18 KNVLKEVISLIKAKY-SGQSGIVYCLTRKECDSVAAALAQ-ERINAISYHAGLADKLRNEVQMKWISNKVHVGHWTVVSK 95 (184)
Q Consensus 18 ~~k~~~L~~~l~~~~-~~~~~IIf~~tr~~~e~la~~L~~-~gi~~~~~hg~l~~~~R~~~~~~f~~g~~~vlVaT~tr~ 95 (184)
..|...|.+++.... ..+++||||+|+..++.+++.|.. .|+++..+||+|++++|..++++|++|+.+|||||+
T Consensus 350 ~~k~~~l~~~l~~~~~~~~~~iVFv~s~~~a~~l~~~L~~~~g~~~~~~Hg~~~~~eR~~il~~Fr~G~~~ILVaTd--- 426 (518)
T PLN00206 350 KQKKQKLFDILKSKQHFKPPAVVFVSSRLGADLLANAITVVTGLKALSIHGEKSMKERREVMKSFLVGEVPVIVATG--- 426 (518)
T ss_pred hhHHHHHHHHHHhhcccCCCEEEEcCCchhHHHHHHHHhhccCcceEEeeCCCCHHHHHHHHHHHHCCCCCEEEEec---
Confidence 346677787776431 236899999999999999999975 699999999999999999999999999999999999
Q ss_pred cHHHHHHHHHhcCCcEEEeeCCCChHHHHHHHHHhhCCC
Q psy437 96 ECDSVAAALAQERINAISYHAGLADKLRNEVQMKWISNK 134 (184)
Q Consensus 96 ~~e~~a~gL~~~gi~~~vih~~~p~~~r~~~~~~f~~~~ 134 (184)
.+++|||.++++ .|||+|+|.+..+|+||.+|.|.
T Consensus 427 ---vl~rGiDip~v~-~VI~~d~P~s~~~yihRiGRaGR 461 (518)
T PLN00206 427 ---VLGRGVDLLRVR-QVIIFDMPNTIKEYIHQIGRASR 461 (518)
T ss_pred ---HhhccCCcccCC-EEEEeCCCCCHHHHHHhcccccc
Confidence 889999999999 99999999999999999977654
No 36
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=99.74 E-value=5.1e-17 Score=143.41 Aligned_cols=87 Identities=21% Similarity=0.271 Sum_probs=81.6
Q ss_pred EEEEEeecccHHHHHHHHHhcCCcEEEeeCCCChHHHHHHHHHhhCCCceEEEE-------EecCCccEEEecCCCCCcc
Q psy437 87 VGHWTVVSKECDSVAAALAQERINAISYHAGLADKLRNEVQMKWISNKVHLYNV-------WKIQWKRIIWIHSLVLIKP 159 (184)
Q Consensus 87 vlVaT~tr~~~e~~a~gL~~~gi~~~vih~~~p~~~r~~~~~~f~~~~~~v~va-------~D~~~vr~v~~~~~p~~~e 159 (184)
+||+|+++++|+.++..|...|+++..||+++|+..|..+++.|+.|++.|+|| +|+|+|++|||+++|.+.+
T Consensus 239 ~IIFc~tr~~~e~la~~L~~~g~~v~~~Ha~l~~~~R~~i~~~F~~g~~~VLVaT~a~~~GIDip~V~~VI~~d~P~s~~ 318 (607)
T PRK11057 239 GIIYCNSRAKVEDTAARLQSRGISAAAYHAGLDNDVRADVQEAFQRDDLQIVVATVAFGMGINKPNVRFVVHFDIPRNIE 318 (607)
T ss_pred EEEEECcHHHHHHHHHHHHhCCCCEEEecCCCCHHHHHHHHHHHHCCCCCEEEEechhhccCCCCCcCEEEEeCCCCCHH
Confidence 478888889999999999999999999999999999999999999999999999 5999999999999999999
Q ss_pred ccccccccccCCcccc
Q psy437 160 DYLPPILDLRLGREDI 175 (184)
Q Consensus 160 ~y~~~i~~~~~~r~~~ 175 (184)
+|+|++ +|+||++.
T Consensus 319 ~y~Qr~--GRaGR~G~ 332 (607)
T PRK11057 319 SYYQET--GRAGRDGL 332 (607)
T ss_pred HHHHHh--hhccCCCC
Confidence 999999 58888754
No 37
>KOG0336|consensus
Probab=99.73 E-value=8.1e-18 Score=138.13 Aligned_cols=114 Identities=14% Similarity=0.120 Sum_probs=102.3
Q ss_pred EEEEccChHHHHHHHHHhhcCCCcEEEEeccHHHHHHHHHHHHhCCCeeEEecCCCCHHHHHHHHHHHhccCceEEEEEe
Q psy437 13 EILPKKNVLKEVISLIKAKYSGQSGIVYCLTRKECDSVAAALAQERINAISYHAGLADKLRNEVQMKWISNKVHVGHWTV 92 (184)
Q Consensus 13 ~v~~~~~k~~~L~~~l~~~~~~~~~IIf~~tr~~~e~la~~L~~~gi~~~~~hg~l~~~~R~~~~~~f~~g~~~vlVaT~ 92 (184)
.|+...+|++.+..++.+.....+.||||..+..|+.++..|.-.|+.+..+||+-+|.+|+..++.|++|+++|||||+
T Consensus 444 ~v~~d~~k~~~~~~f~~~ms~ndKvIiFv~~K~~AD~LSSd~~l~gi~~q~lHG~r~Q~DrE~al~~~ksG~vrILvaTD 523 (629)
T KOG0336|consen 444 IVTTDSEKLEIVQFFVANMSSNDKVIIFVSRKVMADHLSSDFCLKGISSQSLHGNREQSDREMALEDFKSGEVRILVATD 523 (629)
T ss_pred EecccHHHHHHHHHHHHhcCCCceEEEEEechhhhhhccchhhhcccchhhccCChhhhhHHHHHHhhhcCceEEEEEec
Confidence 44455568877777776655677899999999999999999999999999999999999999999999999999999999
Q ss_pred ecccHHHHHHHHHhcCCcEEEeeCCCChHHHHHHHHHhhCC
Q psy437 93 VSKECDSVAAALAQERINAISYHAGLADKLRNEVQMKWISN 133 (184)
Q Consensus 93 tr~~~e~~a~gL~~~gi~~~vih~~~p~~~r~~~~~~f~~~ 133 (184)
.+++|||.++|. +|||||+|.+.+.|+||..+.|
T Consensus 524 ------laSRGlDv~DiT-HV~NyDFP~nIeeYVHRvGrtG 557 (629)
T KOG0336|consen 524 ------LASRGLDVPDIT-HVYNYDFPRNIEEYVHRVGRTG 557 (629)
T ss_pred ------hhhcCCCchhcc-eeeccCCCccHHHHHHHhcccc
Confidence 889999999998 9999999999999999996654
No 38
>KOG0353|consensus
Probab=99.72 E-value=3.9e-17 Score=133.32 Aligned_cols=76 Identities=25% Similarity=0.367 Sum_probs=72.7
Q ss_pred EEEEeecccHHHHHHHHHhcCCcEEEeeCCCChHHHHHHHHHhhCCCceEEEE-------EecCCccEEEecCCCCCccc
Q psy437 88 GHWTVVSKECDSVAAALAQERINAISYHAGLADKLRNEVQMKWISNKVHLYNV-------WKIQWKRIIWIHSLVLIKPD 160 (184)
Q Consensus 88 lVaT~tr~~~e~~a~gL~~~gi~~~vih~~~p~~~r~~~~~~f~~~~~~v~va-------~D~~~vr~v~~~~~p~~~e~ 160 (184)
||||-++++||.+|..|...||.+..||+.|.+..++-+|+.|.+|+++|+|| +|+||||||||+++|++.|+
T Consensus 321 iiyc~sq~d~ekva~alkn~gi~a~~yha~lep~dks~~hq~w~a~eiqvivatvafgmgidkpdvrfvihhsl~ksien 400 (695)
T KOG0353|consen 321 IIYCFSQKDCEKVAKALKNHGIHAGAYHANLEPEDKSGAHQGWIAGEIQVIVATVAFGMGIDKPDVRFVIHHSLPKSIEN 400 (695)
T ss_pred eEEEeccccHHHHHHHHHhcCccccccccccCccccccccccccccceEEEEEEeeecccCCCCCeeEEEecccchhHHH
Confidence 66777778999999999999999999999999999999999999999999999 49999999999999999999
Q ss_pred ccc
Q psy437 161 YLP 163 (184)
Q Consensus 161 y~~ 163 (184)
|||
T Consensus 401 yyq 403 (695)
T KOG0353|consen 401 YYQ 403 (695)
T ss_pred HHH
Confidence 999
No 39
>KOG0341|consensus
Probab=99.71 E-value=3.9e-17 Score=133.44 Aligned_cols=82 Identities=15% Similarity=0.138 Sum_probs=76.1
Q ss_pred ccHHHHHHHHHhcCCcEEEeeCCCChHHHHHHHHHhhCCCceEEEE-------EecCCccEEEecCCCCCcccccccccc
Q psy437 95 KECDSVAAALAQERINAISYHAGLADKLRNEVQMKWISNKVHLYNV-------WKIQWKRIIWIHSLVLIKPDYLPPILD 167 (184)
Q Consensus 95 ~~~e~~a~gL~~~gi~~~vih~~~p~~~r~~~~~~f~~~~~~v~va-------~D~~~vr~v~~~~~p~~~e~y~~~i~~ 167 (184)
.+++.+..+|--.|+.++.||+|-.|+.|+|.-+.|+.|+-.|+|| +|.|+|.||||||+|...|+|+|||++
T Consensus 432 ~DVD~IhEYLLlKGVEavaIHGGKDQedR~~ai~afr~gkKDVLVATDVASKGLDFp~iqHVINyDMP~eIENYVHRIGR 511 (610)
T KOG0341|consen 432 ADVDDIHEYLLLKGVEAVAIHGGKDQEDRHYAIEAFRAGKKDVLVATDVASKGLDFPDIQHVINYDMPEEIENYVHRIGR 511 (610)
T ss_pred cChHHHHHHHHHccceeEEeecCcchhHHHHHHHHHhcCCCceEEEecchhccCCCccchhhccCCChHHHHHHHHHhcc
Confidence 5899999999999999999999999999999999999999999999 699999999999999999999999987
Q ss_pred -ccCCccccc
Q psy437 168 -LRLGREDIR 176 (184)
Q Consensus 168 -~~~~r~~~~ 176 (184)
+|-|+.+|-
T Consensus 512 TGRsg~~GiA 521 (610)
T KOG0341|consen 512 TGRSGKTGIA 521 (610)
T ss_pred cCCCCCccee
Confidence 377776553
No 40
>KOG0338|consensus
Probab=99.70 E-value=6.2e-17 Score=135.83 Aligned_cols=104 Identities=17% Similarity=0.132 Sum_probs=94.8
Q ss_pred hHHHHHHHHHhhcCCCcEEEEeccHHHHHHHHHHHHhCCCeeEEecCCCCHHHHHHHHHHHhccCceEEEEEeecccHHH
Q psy437 20 VLKEVISLIKAKYSGQSGIVYCLTRKECDSVAAALAQERINAISYHAGLADKLRNEVQMKWISNKVHVGHWTVVSKECDS 99 (184)
Q Consensus 20 k~~~L~~~l~~~~~~~~~IIf~~tr~~~e~la~~L~~~gi~~~~~hg~l~~~~R~~~~~~f~~g~~~vlVaT~tr~~~e~ 99 (184)
+-..|..++... -...+|||+.|++.|..+.-.|-..|+++.-+||+|+|++|...++.|+++++++||||+ .
T Consensus 413 Rea~l~~l~~rt-f~~~~ivFv~tKk~AHRl~IllGLlgl~agElHGsLtQ~QRlesL~kFk~~eidvLiaTD------v 485 (691)
T KOG0338|consen 413 REAMLASLITRT-FQDRTIVFVRTKKQAHRLRILLGLLGLKAGELHGSLTQEQRLESLEKFKKEEIDVLIATD------V 485 (691)
T ss_pred cHHHHHHHHHHh-cccceEEEEehHHHHHHHHHHHHHhhchhhhhcccccHHHHHHHHHHHHhccCCEEEEec------h
Confidence 555666666654 346799999999999999999999999999999999999999999999999999999999 9
Q ss_pred HHHHHHhcCCcEEEeeCCCChHHHHHHHHHhh
Q psy437 100 VAAALAQERINAISYHAGLADKLRNEVQMKWI 131 (184)
Q Consensus 100 ~a~gL~~~gi~~~vih~~~p~~~r~~~~~~f~ 131 (184)
+|+|||+.||. .||||.||.+.+.|+||..+
T Consensus 486 AsRGLDI~gV~-tVINy~mP~t~e~Y~HRVGR 516 (691)
T KOG0338|consen 486 ASRGLDIEGVQ-TVINYAMPKTIEHYLHRVGR 516 (691)
T ss_pred hhccCCcccee-EEEeccCchhHHHHHHHhhh
Confidence 99999999999 99999999999999999854
No 41
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=99.70 E-value=4.8e-16 Score=133.14 Aligned_cols=86 Identities=21% Similarity=0.255 Sum_probs=80.0
Q ss_pred eEEEEEeecccHHHHHHHHHhcCCcEEEeeCCCChHHHHHHHHHhhCCCceEEEE-------EecCCccEEEecCCCCCc
Q psy437 86 HVGHWTVVSKECDSVAAALAQERINAISYHAGLADKLRNEVQMKWISNKVHLYNV-------WKIQWKRIIWIHSLVLIK 158 (184)
Q Consensus 86 ~vlVaT~tr~~~e~~a~gL~~~gi~~~vih~~~p~~~r~~~~~~f~~~~~~v~va-------~D~~~vr~v~~~~~p~~~ 158 (184)
++||+|+++..|+.++..|...|+++..+|+++++..|..+.+.|++|++.|+|| +|+|++++|||+++|.+.
T Consensus 244 ~~lVF~~t~~~~~~l~~~L~~~~~~v~~~hg~~~~~eR~~~l~~F~~g~~~vLVaTdv~~rGiDi~~v~~VI~~d~p~~~ 323 (460)
T PRK11776 244 SCVVFCNTKKECQEVADALNAQGFSALALHGDLEQRDRDQVLVRFANRSCSVLVATDVAARGLDIKALEAVINYELARDP 323 (460)
T ss_pred ceEEEECCHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEecccccccchhcCCeEEEecCCCCH
Confidence 3588888889999999999999999999999999999999999999999999999 699999999999999999
Q ss_pred cccccccccccCCcc
Q psy437 159 PDYLPPILDLRLGRE 173 (184)
Q Consensus 159 e~y~~~i~~~~~~r~ 173 (184)
+.|+|+++ |+||.
T Consensus 324 ~~yiqR~G--RtGR~ 336 (460)
T PRK11776 324 EVHVHRIG--RTGRA 336 (460)
T ss_pred hHhhhhcc--cccCC
Confidence 99999996 55553
No 42
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=99.69 E-value=6.4e-17 Score=145.33 Aligned_cols=105 Identities=14% Similarity=0.135 Sum_probs=93.1
Q ss_pred hHHHHHHHHHhhcCCCcEEEEeccHHHHHHHHHHHHhC--------CCeeEEecCCCCHHHHHHHHHHHhccCceEEEEE
Q psy437 20 VLKEVISLIKAKYSGQSGIVYCLTRKECDSVAAALAQE--------RINAISYHAGLADKLRNEVQMKWISNKVHVGHWT 91 (184)
Q Consensus 20 k~~~L~~~l~~~~~~~~~IIf~~tr~~~e~la~~L~~~--------gi~~~~~hg~l~~~~R~~~~~~f~~g~~~vlVaT 91 (184)
+...|..++. .+.++||||+|++.|+.++..|.+. +.++..|||++++++|.+++++|++|++++||||
T Consensus 260 ~~~~l~~l~~---~~~~~IVF~~sr~~ae~l~~~l~~~l~~~~~~l~~~v~~~hgg~~~~eR~~ie~~f~~G~i~vLVaT 336 (742)
T TIGR03817 260 AADLLADLVA---EGARTLTFVRSRRGAELVAAIARRLLGEVDPDLAERVAAYRAGYLPEDRRELERALRDGELLGVATT 336 (742)
T ss_pred HHHHHHHHHH---CCCCEEEEcCCHHHHHHHHHHHHHHHHhhccccccchhheecCCCHHHHHHHHHHHHcCCceEEEEC
Confidence 4445555553 3579999999999999999998763 5678899999999999999999999999999999
Q ss_pred eecccHHHHHHHHHhcCCcEEEeeCCCChHHHHHHHHHhhCCC
Q psy437 92 VVSKECDSVAAALAQERINAISYHAGLADKLRNEVQMKWISNK 134 (184)
Q Consensus 92 ~tr~~~e~~a~gL~~~gi~~~vih~~~p~~~r~~~~~~f~~~~ 134 (184)
+ .+++|+|+++++ +|+|+|+|.+..+|+||..|.|.
T Consensus 337 d------~lerGIDI~~vd-~VI~~~~P~s~~~y~qRiGRaGR 372 (742)
T TIGR03817 337 N------ALELGVDISGLD-AVVIAGFPGTRASLWQQAGRAGR 372 (742)
T ss_pred c------hHhccCCccccc-EEEEeCCCCCHHHHHHhccccCC
Confidence 9 889999999999 99999999999999999977664
No 43
>KOG0347|consensus
Probab=99.69 E-value=5.3e-17 Score=137.22 Aligned_cols=92 Identities=16% Similarity=0.094 Sum_probs=84.4
Q ss_pred CCcEEEEeccHHHHHHHHHHHHhCCCeeEEecCCCCHHHHHHHHHHHhccCceEEEEEeecccHHHHHHHHHhcCCcEEE
Q psy437 34 GQSGIVYCLTRKECDSVAAALAQERINAISYHAGLADKLRNEVQMKWISNKVHVGHWTVVSKECDSVAAALAQERINAIS 113 (184)
Q Consensus 34 ~~~~IIf~~tr~~~e~la~~L~~~gi~~~~~hg~l~~~~R~~~~~~f~~g~~~vlVaT~tr~~~e~~a~gL~~~gi~~~v 113 (184)
++.+|||||+...+..++-.|...+++...+|+.|.|++|.+.+++|++....|||||+ ++|||||++||. +|
T Consensus 463 PGrTlVF~NsId~vKRLt~~L~~L~i~p~~LHA~M~QKqRLknLEkF~~~~~~VLiaTD------VAARGLDIp~V~-HV 535 (731)
T KOG0347|consen 463 PGRTLVFCNSIDCVKRLTVLLNNLDIPPLPLHASMIQKQRLKNLEKFKQSPSGVLIATD------VAARGLDIPGVQ-HV 535 (731)
T ss_pred CCceEEEechHHHHHHHHHHHhhcCCCCchhhHHHHHHHHHHhHHHHhcCCCeEEEeeh------hhhccCCCCCcc-eE
Confidence 56799999999999999999999999999999999999999999999999999999999 999999888888 88
Q ss_pred eeCCCChHHHHHHHHHhhC
Q psy437 114 YHAGLADKLRNEVQMKWIS 132 (184)
Q Consensus 114 ih~~~p~~~r~~~~~~f~~ 132 (184)
|||.+|.+.+.|+||+.+.
T Consensus 536 IHYqVPrtseiYVHRSGRT 554 (731)
T KOG0347|consen 536 IHYQVPRTSEIYVHRSGRT 554 (731)
T ss_pred EEeecCCccceeEeccccc
Confidence 8888888888888877654
No 44
>PTZ00424 helicase 45; Provisional
Probab=99.68 E-value=9.4e-17 Score=134.91 Aligned_cols=107 Identities=16% Similarity=0.221 Sum_probs=95.7
Q ss_pred hHHHHHHHHHhhcCCCcEEEEeccHHHHHHHHHHHHhCCCeeEEecCCCCHHHHHHHHHHHhccCceEEEEEeecccHHH
Q psy437 20 VLKEVISLIKAKYSGQSGIVYCLTRKECDSVAAALAQERINAISYHAGLADKLRNEVQMKWISNKVHVGHWTVVSKECDS 99 (184)
Q Consensus 20 k~~~L~~~l~~~~~~~~~IIf~~tr~~~e~la~~L~~~gi~~~~~hg~l~~~~R~~~~~~f~~g~~~vlVaT~tr~~~e~ 99 (184)
+...+..++... ...++||||+|++.++.+++.|...++.+..+||+|++++|..++++|++|+.+|||||+ .
T Consensus 254 ~~~~l~~~~~~~-~~~~~ivF~~t~~~~~~l~~~l~~~~~~~~~~h~~~~~~~R~~i~~~f~~g~~~vLvaT~------~ 326 (401)
T PTZ00424 254 KFDTLCDLYETL-TITQAIIYCNTRRKVDYLTKKMHERDFTVSCMHGDMDQKDRDLIMREFRSGSTRVLITTD------L 326 (401)
T ss_pred HHHHHHHHHHhc-CCCeEEEEecCcHHHHHHHHHHHHCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEEcc------c
Confidence 556666666543 557899999999999999999999999999999999999999999999999999999999 7
Q ss_pred HHHHHHhcCCcEEEeeCCCChHHHHHHHHHhhCCC
Q psy437 100 VAAALAQERINAISYHAGLADKLRNEVQMKWISNK 134 (184)
Q Consensus 100 ~a~gL~~~gi~~~vih~~~p~~~r~~~~~~f~~~~ 134 (184)
+++|+|.++++ +|+|+++|.+...|+|+.+|.|.
T Consensus 327 l~~GiDip~v~-~VI~~~~p~s~~~y~qr~GRagR 360 (401)
T PTZ00424 327 LARGIDVQQVS-LVINYDLPASPENYIHRIGRSGR 360 (401)
T ss_pred ccCCcCcccCC-EEEEECCCCCHHHEeeccccccc
Confidence 78999999999 99999999999999999877553
No 45
>KOG0340|consensus
Probab=99.68 E-value=2.6e-16 Score=127.06 Aligned_cols=89 Identities=18% Similarity=0.286 Sum_probs=81.2
Q ss_pred eEEEEEeecccHHHHHHHHHhcCCcEEEeeCCCChHHHHHHHHHhhCCCceEEEE-------EecCCccEEEecCCCCCc
Q psy437 86 HVGHWTVVSKECDSVAAALAQERINAISYHAGLADKLRNEVQMKWISNKVHLYNV-------WKIQWKRIIWIHSLVLIK 158 (184)
Q Consensus 86 ~vlVaT~tr~~~e~~a~gL~~~gi~~~vih~~~p~~~r~~~~~~f~~~~~~v~va-------~D~~~vr~v~~~~~p~~~ 158 (184)
.++|++++...|+.++..|+.-++++..+|.-|||+.|-..+-.|+++.+++++| +|||.|..|+||++|.++
T Consensus 256 simIFvnttr~cQ~l~~~l~~le~r~~~lHs~m~Q~eR~~aLsrFrs~~~~iliaTDVAsRGLDIP~V~LVvN~diPr~P 335 (442)
T KOG0340|consen 256 SIMIFVNTTRECQLLSMTLKNLEVRVVSLHSQMPQKERLAALSRFRSNAARILIATDVASRGLDIPTVELVVNHDIPRDP 335 (442)
T ss_pred eEEEEeehhHHHHHHHHHHhhhceeeeehhhcchHHHHHHHHHHHhhcCccEEEEechhhcCCCCCceeEEEecCCCCCH
Confidence 3455555557899999999999999999999999999999999999999999999 699999999999999999
Q ss_pred cccccccccc-cCCccc
Q psy437 159 PDYLPPILDL-RLGRED 174 (184)
Q Consensus 159 e~y~~~i~~~-~~~r~~ 174 (184)
++|+||+++. |+||-+
T Consensus 336 ~~yiHRvGRtARAGR~G 352 (442)
T KOG0340|consen 336 KDYIHRVGRTARAGRKG 352 (442)
T ss_pred HHHHHhhcchhcccCCc
Confidence 9999999996 999964
No 46
>KOG0345|consensus
Probab=99.68 E-value=1.4e-16 Score=132.51 Aligned_cols=117 Identities=15% Similarity=0.139 Sum_probs=107.1
Q ss_pred CeEEEEEEccChHHHHHHHHHhhcCCCcEEEEeccHHHHHHHHHHHHhC--CCeeEEecCCCCHHHHHHHHHHHhccCce
Q psy437 9 NLKYEILPKKNVLKEVISLIKAKYSGQSGIVYCLTRKECDSVAAALAQE--RINAISYHAGLADKLRNEVQMKWISNKVH 86 (184)
Q Consensus 9 Nl~y~v~~~~~k~~~L~~~l~~~~~~~~~IIf~~tr~~~e~la~~L~~~--gi~~~~~hg~l~~~~R~~~~~~f~~g~~~ 86 (184)
-++|.+++...|...|+++|.+. ...++|||.+|+..++.....|... ..+...+||.|++..|..++++|.+..-.
T Consensus 231 ~~~Y~v~~a~eK~~~lv~~L~~~-~~kK~iVFF~TCasVeYf~~~~~~~l~~~~i~~iHGK~~q~~R~k~~~~F~~~~~~ 309 (567)
T KOG0345|consen 231 ALEYLVCEADEKLSQLVHLLNNN-KDKKCIVFFPTCASVEYFGKLFSRLLKKREIFSIHGKMSQKARAKVLEAFRKLSNG 309 (567)
T ss_pred cceeeEecHHHHHHHHHHHHhcc-ccccEEEEecCcchHHHHHHHHHHHhCCCcEEEecchhcchhHHHHHHHHHhccCc
Confidence 46899999989999999999874 7789999999999999999988764 67789999999999999999999998888
Q ss_pred EEEEEeecccHHHHHHHHHhcCCcEEEeeCCCChHHHHHHHHHhhCC
Q psy437 87 VGHWTVVSKECDSVAAALAQERINAISYHAGLADKLRNEVQMKWISN 133 (184)
Q Consensus 87 vlVaT~tr~~~e~~a~gL~~~gi~~~vih~~~p~~~r~~~~~~f~~~ 133 (184)
+|.||+ .+|||||++||+ +|+|+|.|++...++||.++.+
T Consensus 310 vl~~TD------VaARGlDip~iD-~VvQ~DpP~~~~~FvHR~GRTa 349 (567)
T KOG0345|consen 310 VLFCTD------VAARGLDIPGID-LVVQFDPPKDPSSFVHRCGRTA 349 (567)
T ss_pred eEEeeh------hhhccCCCCCce-EEEecCCCCChhHHHhhcchhh
Confidence 999999 999999999999 9999999999999999996543
No 47
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=99.68 E-value=9.3e-16 Score=135.59 Aligned_cols=88 Identities=14% Similarity=0.169 Sum_probs=80.2
Q ss_pred eEEEEEeecccHHHHHHHHHhcCCcEEEeeCCCChHHHHHHHHHhhCCCceEEEE-------EecCCccEEEecCCCCCc
Q psy437 86 HVGHWTVVSKECDSVAAALAQERINAISYHAGLADKLRNEVQMKWISNKVHLYNV-------WKIQWKRIIWIHSLVLIK 158 (184)
Q Consensus 86 ~vlVaT~tr~~~e~~a~gL~~~gi~~~vih~~~p~~~r~~~~~~f~~~~~~v~va-------~D~~~vr~v~~~~~p~~~ 158 (184)
++||+|+++..|+.++..|...|+.+..+|+++++..|..+.+.|++|++.|+|| +|+|+|++||||++|.+.
T Consensus 247 ~~IVF~~tk~~a~~l~~~L~~~g~~~~~lhgd~~q~~R~~il~~Fr~G~~~ILVATdv~arGIDip~V~~VI~~d~P~~~ 326 (629)
T PRK11634 247 AAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAARGLDVERISLVVNYDIPMDS 326 (629)
T ss_pred CEEEEeccHHHHHHHHHHHHhCCCCEEEeeCCCCHHHHHHHHHHHhCCCCCEEEEcchHhcCCCcccCCEEEEeCCCCCH
Confidence 3578888888999999999999999999999999999999999999999999999 699999999999999999
Q ss_pred ccccccccc-ccCCcc
Q psy437 159 PDYLPPILD-LRLGRE 173 (184)
Q Consensus 159 e~y~~~i~~-~~~~r~ 173 (184)
++|+|++++ +|+|+.
T Consensus 327 e~yvqRiGRtGRaGr~ 342 (629)
T PRK11634 327 ESYVHRIGRTGRAGRA 342 (629)
T ss_pred HHHHHHhccccCCCCc
Confidence 999999965 355553
No 48
>KOG0343|consensus
Probab=99.67 E-value=5.2e-16 Score=131.38 Aligned_cols=115 Identities=18% Similarity=0.232 Sum_probs=107.3
Q ss_pred eEEEEEEccChHHHHHHHHHhhcCCCcEEEEeccHHHHHHHHHHHHh--CCCeeEEecCCCCHHHHHHHHHHHhccCceE
Q psy437 10 LKYEILPKKNVLKEVISLIKAKYSGQSGIVYCLTRKECDSVAAALAQ--ERINAISYHAGLADKLRNEVQMKWISNKVHV 87 (184)
Q Consensus 10 l~y~v~~~~~k~~~L~~~l~~~~~~~~~IIf~~tr~~~e~la~~L~~--~gi~~~~~hg~l~~~~R~~~~~~f~~g~~~v 87 (184)
.+|.+++..+|+..|..+|+.+ ...++|||.+|++.+..+.+.+++ .|++...+||+|+|..|..+..+|...+.-|
T Consensus 290 Q~y~~v~l~~Ki~~L~sFI~sh-lk~K~iVF~SscKqvkf~~e~F~rlrpg~~l~~L~G~~~Q~~R~ev~~~F~~~~~~v 368 (758)
T KOG0343|consen 290 QSYVIVPLEDKIDMLWSFIKSH-LKKKSIVFLSSCKQVKFLYEAFCRLRPGIPLLALHGTMSQKKRIEVYKKFVRKRAVV 368 (758)
T ss_pred heEEEEehhhHHHHHHHHHHhc-cccceEEEEehhhHHHHHHHHHHhcCCCCceeeeccchhHHHHHHHHHHHHHhcceE
Confidence 3688888889999999999875 778999999999999999999986 4999999999999999999999999988899
Q ss_pred EEEEeecccHHHHHHHHHhcCCcEEEeeCCCChHHHHHHHHHhhC
Q psy437 88 GHWTVVSKECDSVAAALAQERINAISYHAGLADKLRNEVQMKWIS 132 (184)
Q Consensus 88 lVaT~tr~~~e~~a~gL~~~gi~~~vih~~~p~~~r~~~~~~f~~ 132 (184)
|.||+ .+|||||.+.|+ +|+.+|.|.+..+|+||..++
T Consensus 369 LF~TD------v~aRGLDFpaVd-wViQ~DCPedv~tYIHRvGRt 406 (758)
T KOG0343|consen 369 LFCTD------VAARGLDFPAVD-WVIQVDCPEDVDTYIHRVGRT 406 (758)
T ss_pred EEeeh------hhhccCCCcccc-eEEEecCchhHHHHHHHhhhh
Confidence 99999 999999999999 999999999999999999654
No 49
>KOG0328|consensus
Probab=99.67 E-value=3.3e-15 Score=117.82 Aligned_cols=91 Identities=15% Similarity=0.203 Sum_probs=85.6
Q ss_pred ceEEEEEeecccHHHHHHHHHhcCCcEEEeeCCCChHHHHHHHHHhhCCCceEEEE-------EecCCccEEEecCCCCC
Q psy437 85 VHVGHWTVVSKECDSVAAALAQERINAISYHAGLADKLRNEVQMKWISNKVHLYNV-------WKIQWKRIIWIHSLVLI 157 (184)
Q Consensus 85 ~~vlVaT~tr~~~e~~a~gL~~~gi~~~vih~~~p~~~r~~~~~~f~~~~~~v~va-------~D~~~vr~v~~~~~p~~ 157 (184)
.+.+|+|+|+..++=+...|...+..+...|||||++.|+.+...|++|+.+|+++ +|+|.|++|||||+|..
T Consensus 267 tQavIFcnTk~kVdwLtekm~~~nftVssmHGDm~qkERd~im~dFRsg~SrvLitTDVwaRGiDv~qVslviNYDLP~n 346 (400)
T KOG0328|consen 267 TQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMEQKERDKIMNDFRSGKSRVLITTDVWARGIDVQQVSLVINYDLPNN 346 (400)
T ss_pred heEEEEecccchhhHHHHHHHhhCceeeeccCCcchhHHHHHHHHhhcCCceEEEEechhhccCCcceeEEEEecCCCcc
Confidence 47899999999999999999999999899999999999999999999999999998 49999999999999999
Q ss_pred cccccccccc-ccCCcccc
Q psy437 158 KPDYLPPILD-LRLGREDI 175 (184)
Q Consensus 158 ~e~y~~~i~~-~~~~r~~~ 175 (184)
.|.|+|||++ +|-||.+.
T Consensus 347 re~YIHRIGRSGRFGRkGv 365 (400)
T KOG0328|consen 347 RELYIHRIGRSGRFGRKGV 365 (400)
T ss_pred HHHHhhhhccccccCCcce
Confidence 9999999988 68888743
No 50
>KOG0327|consensus
Probab=99.66 E-value=3.2e-16 Score=127.49 Aligned_cols=113 Identities=15% Similarity=0.247 Sum_probs=102.8
Q ss_pred EEEEEccChHHHHHHHHHhhcCCCcEEEEeccHHHHHHHHHHHHhCCCeeEEecCCCCHHHHHHHHHHHhccCceEEEEE
Q psy437 12 YEILPKKNVLKEVISLIKAKYSGQSGIVYCLTRKECDSVAAALAQERINAISYHAGLADKLRNEVQMKWISNKVHVGHWT 91 (184)
Q Consensus 12 y~v~~~~~k~~~L~~~l~~~~~~~~~IIf~~tr~~~e~la~~L~~~gi~~~~~hg~l~~~~R~~~~~~f~~g~~~vlVaT 91 (184)
|.-..++.|+..|+++.. ...+++|||||++.+.++..+|...++.+.++||.|++.+|..++..|++|..++||.|
T Consensus 244 ~i~v~k~~k~~~l~dl~~---~~~q~~if~nt~r~v~~l~~~L~~~~~~~s~~~~d~~q~~R~~~~~ef~~gssrvlItt 320 (397)
T KOG0327|consen 244 YINVEKEEKLDTLCDLYR---RVTQAVIFCNTRRKVDNLTDKLRAHGFTVSAIHGDMEQNERDTLMREFRSGSSRVLITT 320 (397)
T ss_pred eeeccccccccHHHHHHH---hhhcceEEecchhhHHHHHHHHhhCCceEEEeecccchhhhhHHHHHhhcCCceEEeec
Confidence 333444558899998886 34789999999999999999999999999999999999999999999999999999999
Q ss_pred eecccHHHHHHHHHhcCCcEEEeeCCCChHHHHHHHHHhhCCC
Q psy437 92 VVSKECDSVAAALAQERINAISYHAGLADKLRNEVQMKWISNK 134 (184)
Q Consensus 92 ~tr~~~e~~a~gL~~~gi~~~vih~~~p~~~r~~~~~~f~~~~ 134 (184)
+ .+|+|||...++ +|++|++|...++|+||..++|.
T Consensus 321 d------l~argidv~~~s-lvinydlP~~~~~yihR~gr~gr 356 (397)
T KOG0327|consen 321 D------LLARGIDVQQVS-LVVNYDLPARKENYIHRIGRAGR 356 (397)
T ss_pred c------ccccccchhhcc-eeeeeccccchhhhhhhcccccc
Confidence 9 999999999999 99999999999999999988774
No 51
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=99.66 E-value=6.3e-15 Score=126.22 Aligned_cols=163 Identities=15% Similarity=0.204 Sum_probs=115.7
Q ss_pred CCeEEEEEEccCh------HHHHHHHHHhhcCCCcEEEEeccHHH-HHHHHHHHHhCCCeeE-------------EecCC
Q psy437 8 ANLKYEILPKKNV------LKEVISLIKAKYSGQSGIVYCLTRKE-CDSVAAALAQERINAI-------------SYHAG 67 (184)
Q Consensus 8 ~Nl~y~v~~~~~k------~~~L~~~l~~~~~~~~~IIf~~tr~~-~e~la~~L~~~gi~~~-------------~~hg~ 67 (184)
.++.+.|..+-+. ...+..++.......+.+.|+.|-.. ...++..+......+. .++ -
T Consensus 148 ~~v~~lViDEah~ll~~~~~~~i~~il~~l~~~~q~l~~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~i~~~~~-~ 226 (456)
T PRK10590 148 DQVEILVLDEADRMLDMGFIHDIRRVLAKLPAKRQNLLFSATFSDDIKALAEKLLHNPLEIEVARRNTASEQVTQHVH-F 226 (456)
T ss_pred ccceEEEeecHHHHhccccHHHHHHHHHhCCccCeEEEEeCCCcHHHHHHHHHHcCCCeEEEEecccccccceeEEEE-E
Confidence 4566666665432 23334444332233457788877543 4555554432211110 011 1
Q ss_pred CCHHHHHHHHHHHhcc--CceEEEEEeecccHHHHHHHHHhcCCcEEEeeCCCChHHHHHHHHHhhCCCceEEEE-----
Q psy437 68 LADKLRNEVQMKWISN--KVHVGHWTVVSKECDSVAAALAQERINAISYHAGLADKLRNEVQMKWISNKVHLYNV----- 140 (184)
Q Consensus 68 l~~~~R~~~~~~f~~g--~~~vlVaT~tr~~~e~~a~gL~~~gi~~~vih~~~p~~~r~~~~~~f~~~~~~v~va----- 140 (184)
.+...+..++...... ..++||+|+++..|+.++..|...|+.+..+|+++++..|..+++.|++|++.|+||
T Consensus 227 ~~~~~k~~~l~~l~~~~~~~~~lVF~~t~~~~~~l~~~L~~~g~~~~~lhg~~~~~~R~~~l~~F~~g~~~iLVaTdv~~ 306 (456)
T PRK10590 227 VDKKRKRELLSQMIGKGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAA 306 (456)
T ss_pred cCHHHHHHHHHHHHHcCCCCcEEEEcCcHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHcCCCcEEEEccHHh
Confidence 2233444555555432 347999999999999999999999999999999999999999999999999999999
Q ss_pred --EecCCccEEEecCCCCCccccccccccccCCcc
Q psy437 141 --WKIQWKRIIWIHSLVLIKPDYLPPILDLRLGRE 173 (184)
Q Consensus 141 --~D~~~vr~v~~~~~p~~~e~y~~~i~~~~~~r~ 173 (184)
+|+|+|++||||++|.+.++|+|+++ |+||.
T Consensus 307 rGiDip~v~~VI~~~~P~~~~~yvqR~G--RaGR~ 339 (456)
T PRK10590 307 RGLDIEELPHVVNYELPNVPEDYVHRIG--RTGRA 339 (456)
T ss_pred cCCCcccCCEEEEeCCCCCHHHhhhhcc--ccccC
Confidence 69999999999999999999999995 66664
No 52
>PTZ00110 helicase; Provisional
Probab=99.66 E-value=3.2e-15 Score=130.50 Aligned_cols=163 Identities=14% Similarity=0.170 Sum_probs=113.8
Q ss_pred CeEEEEEEccCh------HHHHHHHHHhhcCCCcEEEEeccH-HHHHHHHHHHHhC-CCeeEE--e--c--CC-------
Q psy437 9 NLKYEILPKKNV------LKEVISLIKAKYSGQSGIVYCLTR-KECDSVAAALAQE-RINAIS--Y--H--AG------- 67 (184)
Q Consensus 9 Nl~y~v~~~~~k------~~~L~~~l~~~~~~~~~IIf~~tr-~~~e~la~~L~~~-gi~~~~--~--h--g~------- 67 (184)
++.|.|..+.+. ...+..++....+..+.+.|+.|- ...+.++..+... .+.+.. . . ..
T Consensus 277 ~v~~lViDEAd~mld~gf~~~i~~il~~~~~~~q~l~~SAT~p~~v~~l~~~l~~~~~v~i~vg~~~l~~~~~i~q~~~~ 356 (545)
T PTZ00110 277 RVTYLVLDEADRMLDMGFEPQIRKIVSQIRPDRQTLMWSATWPKEVQSLARDLCKEEPVHVNVGSLDLTACHNIKQEVFV 356 (545)
T ss_pred hCcEEEeehHHhhhhcchHHHHHHHHHhCCCCCeEEEEEeCCCHHHHHHHHHHhccCCEEEEECCCccccCCCeeEEEEE
Confidence 355666655432 122344443322445678888884 4556666665432 111100 0 0 00
Q ss_pred CCHHHHHHHHHH----HhccCceEEEEEeecccHHHHHHHHHhcCCcEEEeeCCCChHHHHHHHHHhhCCCceEEEE---
Q psy437 68 LADKLRNEVQMK----WISNKVHVGHWTVVSKECDSVAAALAQERINAISYHAGLADKLRNEVQMKWISNKVHLYNV--- 140 (184)
Q Consensus 68 l~~~~R~~~~~~----f~~g~~~vlVaT~tr~~~e~~a~gL~~~gi~~~vih~~~p~~~r~~~~~~f~~~~~~v~va--- 140 (184)
.+..++...+.. +.....++||+|+++..|+.++..|...|+.+..+|+++++..|..+.+.|++|++.|+||
T Consensus 357 ~~~~~k~~~L~~ll~~~~~~~~k~LIF~~t~~~a~~l~~~L~~~g~~~~~ihg~~~~~eR~~il~~F~~G~~~ILVaTdv 436 (545)
T PTZ00110 357 VEEHEKRGKLKMLLQRIMRDGDKILIFVETKKGADFLTKELRLDGWPALCIHGDKKQEERTWVLNEFKTGKSPIMIATDV 436 (545)
T ss_pred EechhHHHHHHHHHHHhcccCCeEEEEecChHHHHHHHHHHHHcCCcEEEEECCCcHHHHHHHHHHHhcCCCcEEEEcch
Confidence 111223333333 3324568999999999999999999999999999999999999999999999999999999
Q ss_pred ----EecCCccEEEecCCCCCccccccccccccCCcc
Q psy437 141 ----WKIQWKRIIWIHSLVLIKPDYLPPILDLRLGRE 173 (184)
Q Consensus 141 ----~D~~~vr~v~~~~~p~~~e~y~~~i~~~~~~r~ 173 (184)
+|+|+|++||||++|.+.++|+||++ |+||.
T Consensus 437 ~~rGIDi~~v~~VI~~d~P~s~~~yvqRiG--RtGR~ 471 (545)
T PTZ00110 437 ASRGLDVKDVKYVINFDFPNQIEDYVHRIG--RTGRA 471 (545)
T ss_pred hhcCCCcccCCEEEEeCCCCCHHHHHHHhc--ccccC
Confidence 69999999999999999999999996 55554
No 53
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=99.63 E-value=1.2e-14 Score=123.55 Aligned_cols=138 Identities=14% Similarity=0.140 Sum_probs=108.4
Q ss_pred CCcEEEEeccH--HHHHHHHHHHHhCCCee-------------EEecCCCCHHHHHHHHHHHhcc--CceEEEEEeeccc
Q psy437 34 GQSGIVYCLTR--KECDSVAAALAQERINA-------------ISYHAGLADKLRNEVQMKWISN--KVHVGHWTVVSKE 96 (184)
Q Consensus 34 ~~~~IIf~~tr--~~~e~la~~L~~~gi~~-------------~~~hg~l~~~~R~~~~~~f~~g--~~~vlVaT~tr~~ 96 (184)
..+.+.|+.|- .....++..+......+ ..++-.-+...+...+..+... ..++||+|+++..
T Consensus 178 ~~q~~~~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~~k~~~l~~l~~~~~~~~~lVF~~s~~~ 257 (434)
T PRK11192 178 RKQTLLFSATLEGDAVQDFAERLLNDPVEVEAEPSRRERKKIHQWYYRADDLEHKTALLCHLLKQPEVTRSIVFVRTRER 257 (434)
T ss_pred ccEEEEEEeecCHHHHHHHHHHHccCCEEEEecCCcccccCceEEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEeCChHH
Confidence 34678888775 34666666664321111 1111111234566777777753 4589999999999
Q ss_pred HHHHHHHHHhcCCcEEEeeCCCChHHHHHHHHHhhCCCceEEEE-------EecCCccEEEecCCCCCcccccccccccc
Q psy437 97 CDSVAAALAQERINAISYHAGLADKLRNEVQMKWISNKVHLYNV-------WKIQWKRIIWIHSLVLIKPDYLPPILDLR 169 (184)
Q Consensus 97 ~e~~a~gL~~~gi~~~vih~~~p~~~r~~~~~~f~~~~~~v~va-------~D~~~vr~v~~~~~p~~~e~y~~~i~~~~ 169 (184)
|+.++..|...|+++..+|+++++..|..+.+.|++|.+.|+|| +|+|++++|||+++|.+.+.|+|+++ |
T Consensus 258 ~~~l~~~L~~~~~~~~~l~g~~~~~~R~~~l~~f~~G~~~vLVaTd~~~~GiDip~v~~VI~~d~p~s~~~yiqr~G--R 335 (434)
T PRK11192 258 VHELAGWLRKAGINCCYLEGEMVQAKRNEAIKRLTDGRVNVLVATDVAARGIDIDDVSHVINFDMPRSADTYLHRIG--R 335 (434)
T ss_pred HHHHHHHHHhCCCCEEEecCCCCHHHHHHHHHHHhCCCCcEEEEccccccCccCCCCCEEEEECCCCCHHHHhhccc--c
Confidence 99999999999999999999999999999999999999999999 69999999999999999999999995 5
Q ss_pred CCcc
Q psy437 170 LGRE 173 (184)
Q Consensus 170 ~~r~ 173 (184)
+||.
T Consensus 336 ~gR~ 339 (434)
T PRK11192 336 TGRA 339 (434)
T ss_pred cccC
Confidence 5654
No 54
>KOG0334|consensus
Probab=99.63 E-value=1.8e-15 Score=135.49 Aligned_cols=118 Identities=14% Similarity=0.194 Sum_probs=109.5
Q ss_pred CeEEEEEE-ccChHHHHHHHHHhhcCCCcEEEEeccHHHHHHHHHHHHhCCCeeEEecCCCCHHHHHHHHHHHhccCceE
Q psy437 9 NLKYEILP-KKNVLKEVISLIKAKYSGQSGIVYCLTRKECDSVAAALAQERINAISYHAGLADKLRNEVQMKWISNKVHV 87 (184)
Q Consensus 9 Nl~y~v~~-~~~k~~~L~~~l~~~~~~~~~IIf~~tr~~~e~la~~L~~~gi~~~~~hg~l~~~~R~~~~~~f~~g~~~v 87 (184)
++.+.|+. ...|+..|..+|.......++||||.....|+.+...|.+.|+.|..+|||.++.+|..+++.|+++.+.+
T Consensus 587 ~q~v~V~~~e~eKf~kL~eLl~e~~e~~~tiiFv~~qe~~d~l~~~L~~ag~~~~slHGgv~q~dR~sti~dfK~~~~~L 666 (997)
T KOG0334|consen 587 TQVVRVCAIENEKFLKLLELLGERYEDGKTIIFVDKQEKADALLRDLQKAGYNCDSLHGGVDQHDRSSTIEDFKNGVVNL 666 (997)
T ss_pred eEEEEEecCchHHHHHHHHHHHHHhhcCCEEEEEcCchHHHHHHHHHHhcCcchhhhcCCCchHHHHhHHHHHhccCceE
Confidence 45667777 66799999999987767899999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeecccHHHHHHHHHhcCCcEEEeeCCCChHHHHHHHHHhhCC
Q psy437 88 GHWTVVSKECDSVAAALAQERINAISYHAGLADKLRNEVQMKWISN 133 (184)
Q Consensus 88 lVaT~tr~~~e~~a~gL~~~gi~~~vih~~~p~~~r~~~~~~f~~~ 133 (184)
||||+ .+|+||+...+. +||||++|.-.++|+||..++|
T Consensus 667 LvaTs------vvarGLdv~~l~-Lvvnyd~pnh~edyvhR~gRTg 705 (997)
T KOG0334|consen 667 LVATS------VVARGLDVKELI-LVVNYDFPNHYEDYVHRVGRTG 705 (997)
T ss_pred EEehh------hhhcccccccce-EEEEcccchhHHHHHHHhcccc
Confidence 99999 899999999999 9999999999999999996654
No 55
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=99.63 E-value=2.7e-15 Score=127.25 Aligned_cols=104 Identities=13% Similarity=0.111 Sum_probs=90.5
Q ss_pred HHHHHHHHHHHhcc--CceEEEEEeecccHHHHHHHHHhcCCcEEEeeCCCChHHHHHHHHHhhCCCceEEEE-------
Q psy437 70 DKLRNEVQMKWISN--KVHVGHWTVVSKECDSVAAALAQERINAISYHAGLADKLRNEVQMKWISNKVHLYNV------- 140 (184)
Q Consensus 70 ~~~R~~~~~~f~~g--~~~vlVaT~tr~~~e~~a~gL~~~gi~~~vih~~~p~~~r~~~~~~f~~~~~~v~va------- 140 (184)
..++...+..+... ..++||+++++..|+.++..|...|+++..+|++++++.|..+.+.|++|++.|+|+
T Consensus 239 ~~~k~~~l~~ll~~~~~~~~lVF~~t~~~~~~l~~~L~~~g~~v~~lhg~~~~~~R~~~l~~F~~g~~~vLVaTdv~~rG 318 (423)
T PRK04837 239 NEEKMRLLQTLIEEEWPDRAIIFANTKHRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILEEFTRGDLDILVATDVAARG 318 (423)
T ss_pred HHHHHHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHHHhCCCcEEEecCCCChhHHHHHHHHHHcCCCcEEEEechhhcC
Confidence 34555566665543 357999999999999999999999999999999999999999999999999999999
Q ss_pred EecCCccEEEecCCCCCcccccccccc-ccCCcc
Q psy437 141 WKIQWKRIIWIHSLVLIKPDYLPPILD-LRLGRE 173 (184)
Q Consensus 141 ~D~~~vr~v~~~~~p~~~e~y~~~i~~-~~~~r~ 173 (184)
+|+|++++||||++|.+.++|+|++++ +|.|+.
T Consensus 319 iDip~v~~VI~~d~P~s~~~yiqR~GR~gR~G~~ 352 (423)
T PRK04837 319 LHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGAS 352 (423)
T ss_pred CCccccCEEEEeCCCCchhheEeccccccCCCCC
Confidence 599999999999999999999999964 344443
No 56
>PRK13767 ATP-dependent helicase; Provisional
Probab=99.63 E-value=2.1e-15 Score=137.86 Aligned_cols=95 Identities=17% Similarity=0.167 Sum_probs=88.4
Q ss_pred CCCcEEEEeccHHHHHHHHHHHHhC------CCeeEEecCCCCHHHHHHHHHHHhccCceEEEEEeecccHHHHHHHHHh
Q psy437 33 SGQSGIVYCLTRKECDSVAAALAQE------RINAISYHAGLADKLRNEVQMKWISNKVHVGHWTVVSKECDSVAAALAQ 106 (184)
Q Consensus 33 ~~~~~IIf~~tr~~~e~la~~L~~~------gi~~~~~hg~l~~~~R~~~~~~f~~g~~~vlVaT~tr~~~e~~a~gL~~ 106 (184)
...++||||+|++.|+.++..|.+. +..+.++||+|++++|..+++.|++|+.++||||+ .+++|+|.
T Consensus 283 ~~~~~LVF~nTr~~ae~la~~L~~~~~~~~~~~~i~~hHg~ls~~~R~~ve~~fk~G~i~vLVaTs------~Le~GIDi 356 (876)
T PRK13767 283 EHRTTLIFTNTRSGAERVLYNLRKRFPEEYDEDNIGAHHSSLSREVRLEVEEKLKRGELKVVVSST------SLELGIDI 356 (876)
T ss_pred cCCCEEEEeCCHHHHHHHHHHHHHhchhhccccceeeeeCCCCHHHHHHHHHHHHcCCCeEEEECC------hHHhcCCC
Confidence 3578999999999999999999862 46789999999999999999999999999999999 88999999
Q ss_pred cCCcEEEeeCCCChHHHHHHHHHhhCCC
Q psy437 107 ERINAISYHAGLADKLRNEVQMKWISNK 134 (184)
Q Consensus 107 ~gi~~~vih~~~p~~~r~~~~~~f~~~~ 134 (184)
++++ +|||++.|.+...|+||..++|.
T Consensus 357 p~Vd-~VI~~~~P~sv~~ylQRiGRaGR 383 (876)
T PRK13767 357 GYID-LVVLLGSPKSVSRLLQRIGRAGH 383 (876)
T ss_pred CCCc-EEEEeCCCCCHHHHHHhcccCCC
Confidence 9999 99999999999999999988773
No 57
>KOG0344|consensus
Probab=99.62 E-value=2.8e-15 Score=127.50 Aligned_cols=125 Identities=13% Similarity=0.119 Sum_probs=109.9
Q ss_pred ChHHHHHHHHHhhcCCCcEEEEeccHHHHHHHHHHH-HhCCCeeEEecCCCCHHHHHHHHHHHhccCceEEEEEeecccH
Q psy437 19 NVLKEVISLIKAKYSGQSGIVYCLTRKECDSVAAAL-AQERINAISYHAGLADKLRNEVQMKWISNKVHVGHWTVVSKEC 97 (184)
Q Consensus 19 ~k~~~L~~~l~~~~~~~~~IIf~~tr~~~e~la~~L-~~~gi~~~~~hg~l~~~~R~~~~~~f~~g~~~vlVaT~tr~~~ 97 (184)
.|+-.+.+++... -.+|.+||+.+.+.|.++...| .-.++.+.++||..++.+|..++++|+.|++.+||||+
T Consensus 373 ~K~lA~rq~v~~g-~~PP~lIfVQs~eRak~L~~~L~~~~~i~v~vIh~e~~~~qrde~~~~FR~g~IwvLicTd----- 446 (593)
T KOG0344|consen 373 GKLLALRQLVASG-FKPPVLIFVQSKERAKQLFEELEIYDNINVDVIHGERSQKQRDETMERFRIGKIWVLICTD----- 446 (593)
T ss_pred hHHHHHHHHHhcc-CCCCeEEEEecHHHHHHHHHHhhhccCcceeeEecccchhHHHHHHHHHhccCeeEEEehh-----
Confidence 4788888888764 5678999999999999999999 77899999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCcEEEeeCCCChHHHHHHHHHhhCCC----ceEEEEE---ecCCccEEEe
Q psy437 98 DSVAAALAQERINAISYHAGLADKLRNEVQMKWISNK----VHLYNVW---KIQWKRIIWI 151 (184)
Q Consensus 98 e~~a~gL~~~gi~~~vih~~~p~~~r~~~~~~f~~~~----~~v~va~---D~~~vr~v~~ 151 (184)
.++||+|..|++ .|||+|+|++.-.|+||..++|. ...+..| |.|.+|.+.+
T Consensus 447 -ll~RGiDf~gvn-~VInyD~p~s~~syihrIGRtgRag~~g~Aitfytd~d~~~ir~iae 505 (593)
T KOG0344|consen 447 -LLARGIDFKGVN-LVINYDFPQSDLSYIHRIGRTGRAGRSGKAITFYTDQDMPRIRSIAE 505 (593)
T ss_pred -hhhccccccCcc-eEEecCCCchhHHHHHHhhccCCCCCCcceEEEeccccchhhhhHHH
Confidence 999999999999 99999999999999999977653 3444443 7777776643
No 58
>KOG0336|consensus
Probab=99.62 E-value=6.1e-15 Score=121.36 Aligned_cols=166 Identities=14% Similarity=0.178 Sum_probs=124.6
Q ss_pred CCCeEEEEEEccChH------HHHHHHHHhhcCCCcEEEEecc-HHHHHHHHHHHHhCCCeeEEecCCCC----------
Q psy437 7 RANLKYEILPKKNVL------KEVISLIKAKYSGQSGIVYCLT-RKECDSVAAALAQERINAISYHAGLA---------- 69 (184)
Q Consensus 7 R~Nl~y~v~~~~~k~------~~L~~~l~~~~~~~~~IIf~~t-r~~~e~la~~L~~~gi~~~~~hg~l~---------- 69 (184)
=.++.|.|....+++ -.+..+|.+.-+..+++.-..| ...+..+++..-+. +..+|-|.|+
T Consensus 365 l~siTYlVlDEADrMLDMgFEpqIrkilldiRPDRqtvmTSATWP~~VrrLa~sY~Ke--p~~v~vGsLdL~a~~sVkQ~ 442 (629)
T KOG0336|consen 365 LASITYLVLDEADRMLDMGFEPQIRKILLDIRPDRQTVMTSATWPEGVRRLAQSYLKE--PMIVYVGSLDLVAVKSVKQN 442 (629)
T ss_pred eeeeEEEEecchhhhhcccccHHHHHHhhhcCCcceeeeecccCchHHHHHHHHhhhC--ceEEEecccceeeeeeeeee
Confidence 345778887665432 2445555443244444444333 34556666544332 2344444442
Q ss_pred -----HHHHHHHHHHHhcc---CceEEEEEeecccHHHHHHHHHhcCCcEEEeeCCCChHHHHHHHHHhhCCCceEEEE-
Q psy437 70 -----DKLRNEVQMKWISN---KVHVGHWTVVSKECDSVAAALAQERINAISYHAGLADKLRNEVQMKWISNKVHLYNV- 140 (184)
Q Consensus 70 -----~~~R~~~~~~f~~g---~~~vlVaT~tr~~~e~~a~gL~~~gi~~~vih~~~p~~~r~~~~~~f~~~~~~v~va- 140 (184)
..++..+.+.|... ..++||++..+..++.++.-+...||++..+|++-.|+.|+...+.|++|.++|+||
T Consensus 443 i~v~~d~~k~~~~~~f~~~ms~ndKvIiFv~~K~~AD~LSSd~~l~gi~~q~lHG~r~Q~DrE~al~~~ksG~vrILvaT 522 (629)
T KOG0336|consen 443 IIVTTDSEKLEIVQFFVANMSSNDKVIIFVSRKVMADHLSSDFCLKGISSQSLHGNREQSDREMALEDFKSGEVRILVAT 522 (629)
T ss_pred EEecccHHHHHHHHHHHHhcCCCceEEEEEechhhhhhccchhhhcccchhhccCChhhhhHHHHHHhhhcCceEEEEEe
Confidence 35566777777653 458999999999999999999999999999999999999999999999999999999
Q ss_pred ------EecCCccEEEecCCCCCcccccccccc-ccCCccc
Q psy437 141 ------WKIQWKRIIWIHSLVLIKPDYLPPILD-LRLGRED 174 (184)
Q Consensus 141 ------~D~~~vr~v~~~~~p~~~e~y~~~i~~-~~~~r~~ 174 (184)
+|++||.||+|||.|...|.|+|++++ +|+||.+
T Consensus 523 DlaSRGlDv~DiTHV~NyDFP~nIeeYVHRvGrtGRaGr~G 563 (629)
T KOG0336|consen 523 DLASRGLDVPDITHVYNYDFPRNIEEYVHRVGRTGRAGRTG 563 (629)
T ss_pred chhhcCCCchhcceeeccCCCccHHHHHHHhcccccCCCCc
Confidence 699999999999999999999999998 4898863
No 59
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=99.58 E-value=5.8e-14 Score=122.00 Aligned_cols=162 Identities=19% Similarity=0.212 Sum_probs=113.9
Q ss_pred CCeEEEEEEccCh------HHHHHHHHHhhcCCCcEEEEeccHH-HHHHHHHHHHhCCCee--------------EEecC
Q psy437 8 ANLKYEILPKKNV------LKEVISLIKAKYSGQSGIVYCLTRK-ECDSVAAALAQERINA--------------ISYHA 66 (184)
Q Consensus 8 ~Nl~y~v~~~~~k------~~~L~~~l~~~~~~~~~IIf~~tr~-~~e~la~~L~~~gi~~--------------~~~hg 66 (184)
.++.|.|..+-+. ...+..++.. .+..+.+.|..|-. ..+.++..+...-+.+ ..+.
T Consensus 269 ~~v~~lViDEad~ml~~gf~~~i~~i~~~-l~~~q~l~~SATl~~~v~~l~~~~~~~~~~i~~~~~~~~~~~v~q~~~~- 346 (518)
T PLN00206 269 DNVSVLVLDEVDCMLERGFRDQVMQIFQA-LSQPQVLLFSATVSPEVEKFASSLAKDIILISIGNPNRPNKAVKQLAIW- 346 (518)
T ss_pred hheeEEEeecHHHHhhcchHHHHHHHHHh-CCCCcEEEEEeeCCHHHHHHHHHhCCCCEEEEeCCCCCCCcceeEEEEe-
Confidence 4566666655432 2334444433 35567888888764 4556666654321100 0000
Q ss_pred CCCHHHH-HHHHHHHhc---cCceEEEEEeecccHHHHHHHHHh-cCCcEEEeeCCCChHHHHHHHHHhhCCCceEEEE-
Q psy437 67 GLADKLR-NEVQMKWIS---NKVHVGHWTVVSKECDSVAAALAQ-ERINAISYHAGLADKLRNEVQMKWISNKVHLYNV- 140 (184)
Q Consensus 67 ~l~~~~R-~~~~~~f~~---g~~~vlVaT~tr~~~e~~a~gL~~-~gi~~~vih~~~p~~~r~~~~~~f~~~~~~v~va- 140 (184)
.....+ ..+.+.+.. ...++||+++++..|+.++..|.. .|+++..+|+++++..|..+.+.|++|++.|+||
T Consensus 347 -~~~~~k~~~l~~~l~~~~~~~~~~iVFv~s~~~a~~l~~~L~~~~g~~~~~~Hg~~~~~eR~~il~~Fr~G~~~ILVaT 425 (518)
T PLN00206 347 -VETKQKKQKLFDILKSKQHFKPPAVVFVSSRLGADLLANAITVVTGLKALSIHGEKSMKERREVMKSFLVGEVPVIVAT 425 (518)
T ss_pred -ccchhHHHHHHHHHHhhcccCCCEEEEcCCchhHHHHHHHHhhccCcceEEeeCCCCHHHHHHHHHHHHCCCCCEEEEe
Confidence 111222 233333322 234799999999999999999964 7999999999999999999999999999999999
Q ss_pred ------EecCCccEEEecCCCCCccccccccccccCCccc
Q psy437 141 ------WKIQWKRIIWIHSLVLIKPDYLPPILDLRLGRED 174 (184)
Q Consensus 141 ------~D~~~vr~v~~~~~p~~~e~y~~~i~~~~~~r~~ 174 (184)
+|+|++++||||++|.+.++|+|+++ |+||.+
T Consensus 426 dvl~rGiDip~v~~VI~~d~P~s~~~yihRiG--RaGR~g 463 (518)
T PLN00206 426 GVLGRGVDLLRVRQVIIFDMPNTIKEYIHQIG--RASRMG 463 (518)
T ss_pred cHhhccCCcccCCEEEEeCCCCCHHHHHHhcc--ccccCC
Confidence 59999999999999999999999995 666653
No 60
>KOG0335|consensus
Probab=99.58 E-value=1.6e-14 Score=121.53 Aligned_cols=86 Identities=19% Similarity=0.142 Sum_probs=82.2
Q ss_pred eEEEEEeecccHHHHHHHHHhcCCcEEEeeCCCChHHHHHHHHHhhCCCceEEEE-------EecCCccEEEecCCCCCc
Q psy437 86 HVGHWTVVSKECDSVAAALAQERINAISYHAGLADKLRNEVQMKWISNKVHLYNV-------WKIQWKRIIWIHSLVLIK 158 (184)
Q Consensus 86 ~vlVaT~tr~~~e~~a~gL~~~gi~~~vih~~~p~~~r~~~~~~f~~~~~~v~va-------~D~~~vr~v~~~~~p~~~ 158 (184)
.++|++.+.+.|+.++..|...++++.-||++..+..|....+.|++|+.+++|| +|+|+|+||||||+|.+.
T Consensus 339 ~tlvFvEt~~~~d~l~~~l~~~~~~~~sIhg~~tq~er~~al~~Fr~g~~pvlVaT~VaaRGlDi~~V~hVInyDmP~d~ 418 (482)
T KOG0335|consen 339 KTLVFVETKRGADELAAFLSSNGYPAKSIHGDRTQIEREQALNDFRNGKAPVLVATNVAARGLDIPNVKHVINYDMPADI 418 (482)
T ss_pred eEEEEeeccchhhHHHHHHhcCCCCceeecchhhhhHHHHHHHHhhcCCcceEEEehhhhcCCCCCCCceeEEeecCcch
Confidence 6899999999999999999999999999999999999999999999999999999 699999999999999999
Q ss_pred cccccccccccCCcc
Q psy437 159 PDYLPPILDLRLGRE 173 (184)
Q Consensus 159 e~y~~~i~~~~~~r~ 173 (184)
++|+|||+ |.||.
T Consensus 419 d~YvHRIG--RTGR~ 431 (482)
T KOG0335|consen 419 DDYVHRIG--RTGRV 431 (482)
T ss_pred hhHHHhcc--ccccC
Confidence 99999995 66665
No 61
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=99.58 E-value=5.4e-14 Score=120.99 Aligned_cols=100 Identities=16% Similarity=0.151 Sum_probs=88.4
Q ss_pred HHHHHHHHHhcc--CceEEEEEeecccHHHHHHHHHhcCCcEEEeeCCCChHHHHHHHHHhhCCCceEEEE-------Ee
Q psy437 72 LRNEVQMKWISN--KVHVGHWTVVSKECDSVAAALAQERINAISYHAGLADKLRNEVQMKWISNKVHLYNV-------WK 142 (184)
Q Consensus 72 ~R~~~~~~f~~g--~~~vlVaT~tr~~~e~~a~gL~~~gi~~~vih~~~p~~~r~~~~~~f~~~~~~v~va-------~D 142 (184)
++...+..+... ..++||+|+++..|+.++..|...|+.+..+|+++|+..|..+.+.|++|++.++|+ +|
T Consensus 321 ~k~~~l~~ll~~~~~~~~IVF~~s~~~~~~l~~~L~~~~~~~~~~~g~~~~~~R~~~~~~Fr~G~~~vLvaT~~l~~GID 400 (475)
T PRK01297 321 DKYKLLYNLVTQNPWERVMVFANRKDEVRRIEERLVKDGINAAQLSGDVPQHKRIKTLEGFREGKIRVLVATDVAGRGIH 400 (475)
T ss_pred hHHHHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHhCCCCcEEEEccccccCCc
Confidence 444555555432 348999999999999999999999999999999999999999999999999999999 59
Q ss_pred cCCccEEEecCCCCCccccccccccccCCcc
Q psy437 143 IQWKRIIWIHSLVLIKPDYLPPILDLRLGRE 173 (184)
Q Consensus 143 ~~~vr~v~~~~~p~~~e~y~~~i~~~~~~r~ 173 (184)
+|++++||++++|.+.++|+|+++ |+||.
T Consensus 401 i~~v~~VI~~~~P~s~~~y~Qr~G--RaGR~ 429 (475)
T PRK01297 401 IDGISHVINFTLPEDPDDYVHRIG--RTGRA 429 (475)
T ss_pred ccCCCEEEEeCCCCCHHHHHHhhC--ccCCC
Confidence 999999999999999999999995 66664
No 62
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=99.57 E-value=5e-14 Score=123.63 Aligned_cols=101 Identities=13% Similarity=0.154 Sum_probs=88.5
Q ss_pred HHHHHHHHHHhc--cCceEEEEEeecccHHHHHHHHHhcCCcEEEeeCCCChHHHHHHHHHhhCCCceEEEE-------E
Q psy437 71 KLRNEVQMKWIS--NKVHVGHWTVVSKECDSVAAALAQERINAISYHAGLADKLRNEVQMKWISNKVHLYNV-------W 141 (184)
Q Consensus 71 ~~R~~~~~~f~~--g~~~vlVaT~tr~~~e~~a~gL~~~gi~~~vih~~~p~~~r~~~~~~f~~~~~~v~va-------~ 141 (184)
.++...+..+.. ...++||+|+++..|+.++..|...|+.+.++|+++|+..|..+.+.|++|++.|+|+ +
T Consensus 242 ~~k~~~L~~ll~~~~~~k~LVF~nt~~~ae~l~~~L~~~g~~v~~lhg~l~~~eR~~il~~Fr~G~~~VLVaTdv~arGI 321 (572)
T PRK04537 242 EEKQTLLLGLLSRSEGARTMVFVNTKAFVERVARTLERHGYRVGVLSGDVPQKKRESLLNRFQKGQLEILVATDVAARGL 321 (572)
T ss_pred HHHHHHHHHHHhcccCCcEEEEeCCHHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEehhhhcCC
Confidence 344444444443 3457999999999999999999999999999999999999999999999999999999 6
Q ss_pred ecCCccEEEecCCCCCccccccccccccCCcc
Q psy437 142 KIQWKRIIWIHSLVLIKPDYLPPILDLRLGRE 173 (184)
Q Consensus 142 D~~~vr~v~~~~~p~~~e~y~~~i~~~~~~r~ 173 (184)
|+|+|++||||++|.+.++|+|+++ |+||.
T Consensus 322 Dip~V~~VInyd~P~s~~~yvqRiG--RaGR~ 351 (572)
T PRK04537 322 HIDGVKYVYNYDLPFDAEDYVHRIG--RTARL 351 (572)
T ss_pred CccCCCEEEEcCCCCCHHHHhhhhc--ccccC
Confidence 9999999999999999999999996 55553
No 63
>PRK04914 ATP-dependent helicase HepA; Validated
Probab=99.57 E-value=1.8e-14 Score=131.56 Aligned_cols=107 Identities=14% Similarity=0.062 Sum_probs=97.1
Q ss_pred ChHHHHHHHHHhhcCCCcEEEEeccHHHHHHHHHHHH-hCCCeeEEecCCCCHHHHHHHHHHHhcc--CceEEEEEeecc
Q psy437 19 NVLKEVISLIKAKYSGQSGIVYCLTRKECDSVAAALA-QERINAISYHAGLADKLRNEVQMKWISN--KVHVGHWTVVSK 95 (184)
Q Consensus 19 ~k~~~L~~~l~~~~~~~~~IIf~~tr~~~e~la~~L~-~~gi~~~~~hg~l~~~~R~~~~~~f~~g--~~~vlVaT~tr~ 95 (184)
.|+..|.++|+.. ...++||||+++..++.+++.|. ..|+++..+||+|++.+|.++++.|.++ ..+|||||+
T Consensus 479 ~Ki~~L~~~L~~~-~~~KvLVF~~~~~t~~~L~~~L~~~~Gi~~~~ihG~~s~~eR~~~~~~F~~~~~~~~VLIsTd--- 554 (956)
T PRK04914 479 PRVEWLIDFLKSH-RSEKVLVICAKAATALQLEQALREREGIRAAVFHEGMSIIERDRAAAYFADEEDGAQVLLCSE--- 554 (956)
T ss_pred HHHHHHHHHHHhc-CCCeEEEEeCcHHHHHHHHHHHhhccCeeEEEEECCCCHHHHHHHHHHHhcCCCCccEEEech---
Confidence 4888899988764 57899999999999999999994 5699999999999999999999999984 589999999
Q ss_pred cHHHHHHHHHhcCCcEEEeeCCCChHHHHHHHHHhhCC
Q psy437 96 ECDSVAAALAQERINAISYHAGLADKLRNEVQMKWISN 133 (184)
Q Consensus 96 ~~e~~a~gL~~~gi~~~vih~~~p~~~r~~~~~~f~~~ 133 (184)
..++|++...++ .|||+|+|-++..|.||..+.+
T Consensus 555 ---vgseGlNlq~a~-~VInfDlP~nP~~~eQRIGR~~ 588 (956)
T PRK04914 555 ---IGSEGRNFQFAS-HLVLFDLPFNPDLLEQRIGRLD 588 (956)
T ss_pred ---hhccCCCccccc-EEEEecCCCCHHHHHHHhcccc
Confidence 788999999999 9999999999999999996543
No 64
>PRK09751 putative ATP-dependent helicase Lhr; Provisional
Probab=99.56 E-value=1.9e-14 Score=135.43 Aligned_cols=95 Identities=15% Similarity=0.111 Sum_probs=86.7
Q ss_pred CCCcEEEEeccHHHHHHHHHHHHhCC---------------------------------CeeEEecCCCCHHHHHHHHHH
Q psy437 33 SGQSGIVYCLTRKECDSVAAALAQER---------------------------------INAISYHAGLADKLRNEVQMK 79 (184)
Q Consensus 33 ~~~~~IIf~~tr~~~e~la~~L~~~g---------------------------------i~~~~~hg~l~~~~R~~~~~~ 79 (184)
...++|||||||+.||.++..|.+.. +.+.++||+|++++|..+++.
T Consensus 243 ~~~stLVFvNSR~~AE~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ia~~HHGsLSkeeR~~IE~~ 322 (1490)
T PRK09751 243 RHRSTIVFTNSRGLAEKLTARLNELYAARLQRSPSIAVDAAHFESTSGATSNRVQSSDVFIARSHHGSVSKEQRAITEQA 322 (1490)
T ss_pred cCCCEEEECCCHHHHHHHHHHHHHhhhhhccccccccchhhhhhhccccchhccccccceeeeeccccCCHHHHHHHHHH
Confidence 45789999999999999999997531 125689999999999999999
Q ss_pred HhccCceEEEEEeecccHHHHHHHHHhcCCcEEEeeCCCChHHHHHHHHHhhCCC
Q psy437 80 WISNKVHVGHWTVVSKECDSVAAALAQERINAISYHAGLADKLRNEVQMKWISNK 134 (184)
Q Consensus 80 f~~g~~~vlVaT~tr~~~e~~a~gL~~~gi~~~vih~~~p~~~r~~~~~~f~~~~ 134 (184)
|++|+.++||||+ .++.|+|..+++ +|||++.|.+..+|+||..++|.
T Consensus 323 fK~G~LrvLVATs------sLELGIDIg~VD-lVIq~gsP~sVas~LQRiGRAGR 370 (1490)
T PRK09751 323 LKSGELRCVVATS------SLELGIDMGAVD-LVIQVATPLSVASGLQRIGRAGH 370 (1490)
T ss_pred HHhCCceEEEeCc------HHHccCCcccCC-EEEEeCCCCCHHHHHHHhCCCCC
Confidence 9999999999999 889999999999 99999999999999999998875
No 65
>KOG0338|consensus
Probab=99.55 E-value=1.1e-14 Score=122.48 Aligned_cols=160 Identities=14% Similarity=0.129 Sum_probs=118.0
Q ss_pred CCCCCCeEEEEEEccChHHHHHHHHHhhcCCCcEEEEeccHH-HHHHHHHHHHhCCCeeEEecCCCCHHHHHHHHHHHhc
Q psy437 4 SFNRANLKYEILPKKNVLKEVISLIKAKYSGQSGIVYCLTRK-ECDSVAAALAQERINAISYHAGLADKLRNEVQMKWIS 82 (184)
Q Consensus 4 s~~R~Nl~y~v~~~~~k~~~L~~~l~~~~~~~~~IIf~~tr~-~~e~la~~L~~~gi~~~~~hg~l~~~~R~~~~~~f~~ 82 (184)
+-+|+|+.|+++..+ ++..|..+-. ..|.=||++..+ .+-.|.+.+- ++.. + -...|..++-.+..
T Consensus 356 pk~RQTmLFSATMte-eVkdL~slSL----~kPvrifvd~~~~~a~~LtQEFi----RIR~---~-re~dRea~l~~l~~ 422 (691)
T KOG0338|consen 356 PKNRQTMLFSATMTE-EVKDLASLSL----NKPVRIFVDPNKDTAPKLTQEFI----RIRP---K-REGDREAMLASLIT 422 (691)
T ss_pred cccccceeehhhhHH-HHHHHHHhhc----CCCeEEEeCCccccchhhhHHHh----eecc---c-cccccHHHHHHHHH
Confidence 446777777777763 3455554332 245666665433 3444444442 1111 0 01235555555443
Q ss_pred --cCceEEEEEeecccHHHHHHHHHhcCCcEEEeeCCCChHHHHHHHHHhhCCCceEEEE-------EecCCccEEEecC
Q psy437 83 --NKVHVGHWTVVSKECDSVAAALAQERINAISYHAGLADKLRNEVQMKWISNKVHLYNV-------WKIQWKRIIWIHS 153 (184)
Q Consensus 83 --g~~~vlVaT~tr~~~e~~a~gL~~~gi~~~vih~~~p~~~r~~~~~~f~~~~~~v~va-------~D~~~vr~v~~~~ 153 (184)
-+.++||++.+++.|.++---|.--|+++.=+||++.|..|-...+.|+.+.+.+++| +||+.|..||||.
T Consensus 423 rtf~~~~ivFv~tKk~AHRl~IllGLlgl~agElHGsLtQ~QRlesL~kFk~~eidvLiaTDvAsRGLDI~gV~tVINy~ 502 (691)
T KOG0338|consen 423 RTFQDRTIVFVRTKKQAHRLRILLGLLGLKAGELHGSLTQEQRLESLEKFKKEEIDVLIATDVASRGLDIEGVQTVINYA 502 (691)
T ss_pred HhcccceEEEEehHHHHHHHHHHHHHhhchhhhhcccccHHHHHHHHHHHHhccCCEEEEechhhccCCccceeEEEecc
Confidence 3568999999999988887777888999999999999999999999999999999999 6999999999999
Q ss_pred CCCCccccccccccc-cCCccccc
Q psy437 154 LVLIKPDYLPPILDL-RLGREDIR 176 (184)
Q Consensus 154 ~p~~~e~y~~~i~~~-~~~r~~~~ 176 (184)
+|++.+.|+||++++ |+||++.+
T Consensus 503 mP~t~e~Y~HRVGRTARAGRaGrs 526 (691)
T KOG0338|consen 503 MPKTIEHYLHRVGRTARAGRAGRS 526 (691)
T ss_pred CchhHHHHHHHhhhhhhcccCcce
Confidence 999999999999996 99998543
No 66
>PRK14701 reverse gyrase; Provisional
Probab=99.55 E-value=1e-14 Score=138.95 Aligned_cols=117 Identities=12% Similarity=0.123 Sum_probs=83.9
Q ss_pred CCCCCCCeEEEEEE----ccChHHHHHHHHHhhcCCCcEEEEeccHHH---HHHHHHHHHhCCCeeEEecCCCCHHHHHH
Q psy437 3 SSFNRANLKYEILP----KKNVLKEVISLIKAKYSGQSGIVYCLTRKE---CDSVAAALAQERINAISYHAGLADKLRNE 75 (184)
Q Consensus 3 ~s~~R~Nl~y~v~~----~~~k~~~L~~~l~~~~~~~~~IIf~~tr~~---~e~la~~L~~~gi~~~~~hg~l~~~~R~~ 75 (184)
.++.++|+...+.. .......|.++++. .+.++||||+|++. |+.+++.|...|+++..+||+ |..
T Consensus 297 v~~~~~~lr~i~~~yi~~~~~~k~~L~~ll~~--~g~~gIVF~~t~~~~e~ae~la~~L~~~Gi~a~~~h~~-----R~~ 369 (1638)
T PRK14701 297 VGSGRSALRNIVDVYLNPEKIIKEHVRELLKK--LGKGGLIFVPIDEGAEKAEEIEKYLLEDGFKIELVSAK-----NKK 369 (1638)
T ss_pred ecCCCCCCCCcEEEEEECCHHHHHHHHHHHHh--CCCCeEEEEeccccchHHHHHHHHHHHCCCeEEEecch-----HHH
Confidence 35566665443322 22223567777765 35789999999885 589999999999999999996 899
Q ss_pred HHHHHhccCceEEEEEeecccHHHHHHHHHhcC-CcEEEeeCCCCh---HHHHHHHHH
Q psy437 76 VQMKWISNKVHVGHWTVVSKECDSVAAALAQER-INAISYHAGLAD---KLRNEVQMK 129 (184)
Q Consensus 76 ~~~~f~~g~~~vlVaT~tr~~~e~~a~gL~~~g-i~~~vih~~~p~---~~r~~~~~~ 129 (184)
.+++|++|+++|||||+++-+ .+|||||.++ |+ +|+|+|+|+ +.+.|.|..
T Consensus 370 ~l~~F~~G~~~VLVaT~s~~g--vaaRGIDiP~~Vr-yvi~~~~Pk~~~~~e~~~~~~ 424 (1638)
T PRK14701 370 GFDLFEEGEIDYLIGVATYYG--TLVRGLDLPERIR-FAVFYGVPKFRFRVDLEDPTI 424 (1638)
T ss_pred HHHHHHcCCCCEEEEecCCCC--eeEecCccCCccC-EEEEeCCCCCCcchhhcccch
Confidence 999999999999999974422 4566666666 55 666666666 555555544
No 67
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=99.54 E-value=3.9e-14 Score=126.80 Aligned_cols=123 Identities=15% Similarity=0.100 Sum_probs=102.7
Q ss_pred CCCCCCeEEEE-----EEccChHHHHHHHHHhh-cCCCcEEEEeccHHHHHHHHHHHHhCCCeeEEecCCCCHHHHHHHH
Q psy437 4 SFNRANLKYEI-----LPKKNVLKEVISLIKAK-YSGQSGIVYCLTRKECDSVAAALAQERINAISYHAGLADKLRNEVQ 77 (184)
Q Consensus 4 s~~R~Nl~y~v-----~~~~~k~~~L~~~l~~~-~~~~~~IIf~~tr~~~e~la~~L~~~gi~~~~~hg~l~~~~R~~~~ 77 (184)
|.+||++.... .....|...|.+.+.+. ..+.|+||||+|++.++.++..|.+.|+++..+||+++++++..+.
T Consensus 392 Pt~kp~~r~d~~~~i~~~~~~K~~al~~~i~~~~~~~~pvLIf~~t~~~se~l~~~L~~~gi~~~~L~~~~~~~e~~~i~ 471 (790)
T PRK09200 392 PTNRPIIRIDYPDKVFVTLDEKYKAVIEEVKERHETGRPVLIGTGSIEQSETFSKLLDEAGIPHNLLNAKNAAKEAQIIA 471 (790)
T ss_pred CCCCCcccccCCCeEEcCHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCCEEEecCCccHHHHHHHH
Confidence 56777765322 23345888888888653 3577899999999999999999999999999999999998888888
Q ss_pred HHHhccCceEEEEEeecccHHHHHHHHHh---cCCc----EEEeeCCCChHHHHHHHHHhhCCC
Q psy437 78 MKWISNKVHVGHWTVVSKECDSVAAALAQ---ERIN----AISYHAGLADKLRNEVQMKWISNK 134 (184)
Q Consensus 78 ~~f~~g~~~vlVaT~tr~~~e~~a~gL~~---~gi~----~~vih~~~p~~~r~~~~~~f~~~~ 134 (184)
..+..| +|+|||+ .++||+|+ +++. -+|||+++|.+.|.|.|+.+++|.
T Consensus 472 ~ag~~g--~VlIATd------mAgRG~DI~l~~~V~~~GGL~VI~~d~p~s~r~y~qr~GRtGR 527 (790)
T PRK09200 472 EAGQKG--AVTVATN------MAGRGTDIKLGEGVHELGGLAVIGTERMESRRVDLQLRGRSGR 527 (790)
T ss_pred HcCCCC--eEEEEcc------chhcCcCCCcccccccccCcEEEeccCCCCHHHHHHhhccccC
Confidence 887766 7999999 88999999 5775 399999999999999999977654
No 68
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=99.54 E-value=9.9e-14 Score=124.88 Aligned_cols=100 Identities=13% Similarity=0.088 Sum_probs=87.2
Q ss_pred HHHHHHHHHhccCceEEEEEeecccHHHHHHHHHhc--------CCcEEEeeCCCChHHHHHHHHHhhCCCceEEEE---
Q psy437 72 LRNEVQMKWISNKVHVGHWTVVSKECDSVAAALAQE--------RINAISYHAGLADKLRNEVQMKWISNKVHLYNV--- 140 (184)
Q Consensus 72 ~R~~~~~~f~~g~~~vlVaT~tr~~~e~~a~gL~~~--------gi~~~vih~~~p~~~r~~~~~~f~~~~~~v~va--- 140 (184)
++...+..+.....++||+|++|+.||.+++.|... +.++.+||+|++++.|..+.+.|++|++.++|+
T Consensus 259 ~~~~~l~~l~~~~~~~IVF~~sr~~ae~l~~~l~~~l~~~~~~l~~~v~~~hgg~~~~eR~~ie~~f~~G~i~vLVaTd~ 338 (742)
T TIGR03817 259 EAADLLADLVAEGARTLTFVRSRRGAELVAAIARRLLGEVDPDLAERVAAYRAGYLPEDRRELERALRDGELLGVATTNA 338 (742)
T ss_pred HHHHHHHHHHHCCCCEEEEcCCHHHHHHHHHHHHHHHHhhccccccchhheecCCCHHHHHHHHHHHHcCCceEEEECch
Confidence 455566666666679999999999999999988543 556789999999999999999999999999999
Q ss_pred ----EecCCccEEEecCCCCCccccccccccccCCcc
Q psy437 141 ----WKIQWKRIIWIHSLVLIKPDYLPPILDLRLGRE 173 (184)
Q Consensus 141 ----~D~~~vr~v~~~~~p~~~e~y~~~i~~~~~~r~ 173 (184)
+|++++.+|||+++|.+.++|+|+++ |+||.
T Consensus 339 lerGIDI~~vd~VI~~~~P~s~~~y~qRiG--RaGR~ 373 (742)
T TIGR03817 339 LELGVDISGLDAVVIAGFPGTRASLWQQAG--RAGRR 373 (742)
T ss_pred HhccCCcccccEEEEeCCCCCHHHHHHhcc--ccCCC
Confidence 69999999999999999999999996 55554
No 69
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=99.53 E-value=2e-13 Score=113.20 Aligned_cols=116 Identities=12% Similarity=0.066 Sum_probs=92.5
Q ss_pred ChHHHHHHHHHhhcCCCcEEEEeccHHHHHHHHHHHHhCCC--eeEEecCCCCHHHHHH----HHHHHhccCceEEEEEe
Q psy437 19 NVLKEVISLIKAKYSGQSGIVYCLTRKECDSVAAALAQERI--NAISYHAGLADKLRNE----VQMKWISNKVHVGHWTV 92 (184)
Q Consensus 19 ~k~~~L~~~l~~~~~~~~~IIf~~tr~~~e~la~~L~~~gi--~~~~~hg~l~~~~R~~----~~~~f~~g~~~vlVaT~ 92 (184)
.+...+.+++.....+.++||||+|++.|+.+++.|.+.+. .+..+||++++.+|.+ +++.|++|+.++||||+
T Consensus 207 ~~~~~l~~l~~~~~~~~~~lVf~~t~~~~~~~~~~L~~~~~~~~~~~~h~~~~~~~r~~~~~~~~~~f~~~~~~ilvaT~ 286 (358)
T TIGR01587 207 GEISSLERLLEFIKKGGKIAIIVNTVDRAQEFYQQLKENAPEEEIMLLHSRFTEKDRAKKEAELLEEMKKNEKFVIVATQ 286 (358)
T ss_pred cCHHHHHHHHHHhhCCCeEEEEECCHHHHHHHHHHHHhhcCCCeEEEEECCCCHHHHHHHHHHHHHHhcCCCCeEEEECc
Confidence 35555665554333567999999999999999999988766 5899999999999976 48899999999999999
Q ss_pred ecccHHHHHHHHHhcCCcEEEeeCCCChHHHHHHHHHhhCCC--------ceEEEEEecC
Q psy437 93 VSKECDSVAAALAQERINAISYHAGLADKLRNEVQMKWISNK--------VHLYNVWKIQ 144 (184)
Q Consensus 93 tr~~~e~~a~gL~~~gi~~~vih~~~p~~~r~~~~~~f~~~~--------~~v~va~D~~ 144 (184)
.+++|+|.+ ++ .++++..| ..+|+||.+|.|. ..+++..+.+
T Consensus 287 ------~~~~GiDi~-~~-~vi~~~~~--~~~~iqr~GR~gR~g~~~~~~~~~~v~~~~~ 336 (358)
T TIGR01587 287 ------VIEASLDIS-AD-VMITELAP--IDSLIQRLGRLHRYGRKNGENFEVYIITIAP 336 (358)
T ss_pred ------chhceeccC-CC-EEEEcCCC--HHHHHHHhccccCCCCCCCCCCeEEEEeecC
Confidence 889999995 66 88888777 5789999966543 2566664444
No 70
>KOG4284|consensus
Probab=99.53 E-value=1.9e-14 Score=123.95 Aligned_cols=107 Identities=11% Similarity=0.112 Sum_probs=99.8
Q ss_pred hHHHHHHHHHhhcCCCcEEEEeccHHHHHHHHHHHHhCCCeeEEecCCCCHHHHHHHHHHHhccCceEEEEEeecccHHH
Q psy437 20 VLKEVISLIKAKYSGQSGIVYCLTRKECDSVAAALAQERINAISYHAGLADKLRNEVQMKWISNKVHVGHWTVVSKECDS 99 (184)
Q Consensus 20 k~~~L~~~l~~~~~~~~~IIf~~tr~~~e~la~~L~~~gi~~~~~hg~l~~~~R~~~~~~f~~g~~~vlVaT~tr~~~e~ 99 (184)
|++.|-++++.. +..++||||+....|+.++..|...|+.|.++.|.|+|.+|..++++++.-.++|||+|+ .
T Consensus 259 klq~L~~vf~~i-py~QAlVF~~~~sra~~~a~~L~ssG~d~~~ISgaM~Q~~Rl~a~~~lr~f~~rILVsTD------L 331 (980)
T KOG4284|consen 259 KLQKLTHVFKSI-PYVQALVFCDQISRAEPIATHLKSSGLDVTFISGAMSQKDRLLAVDQLRAFRVRILVSTD------L 331 (980)
T ss_pred HHHHHHHHHhhC-chHHHHhhhhhhhhhhHHHHHhhccCCCeEEeccccchhHHHHHHHHhhhceEEEEEecc------h
Confidence 777777777653 778999999999999999999999999999999999999999999999999999999999 9
Q ss_pred HHHHHHhcCCcEEEeeCCCChHHHHHHHHHhhCCC
Q psy437 100 VAAALAQERINAISYHAGLADKLRNEVQMKWISNK 134 (184)
Q Consensus 100 ~a~gL~~~gi~~~vih~~~p~~~r~~~~~~f~~~~ 134 (184)
.|||+|.+.++ +|+|.|.|++.++|.||..+.|.
T Consensus 332 taRGIDa~~vN-LVVNiD~p~d~eTY~HRIGRAgR 365 (980)
T KOG4284|consen 332 TARGIDADNVN-LVVNIDAPADEETYFHRIGRAGR 365 (980)
T ss_pred hhccCCccccc-eEEecCCCcchHHHHHHhhhccc
Confidence 99999999999 99999999999999999976653
No 71
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=99.53 E-value=6.9e-14 Score=122.97 Aligned_cols=123 Identities=11% Similarity=0.033 Sum_probs=96.7
Q ss_pred CCCCCCe----E-EEEEEccChHHHHHHHHHhhc-CCCcEEEEeccHHHHHHHHHHHHhCCCeeEEecCCCCHHHHHHHH
Q psy437 4 SFNRANL----K-YEILPKKNVLKEVISLIKAKY-SGQSGIVYCLTRKECDSVAAALAQERINAISYHAGLADKLRNEVQ 77 (184)
Q Consensus 4 s~~R~Nl----~-y~v~~~~~k~~~L~~~l~~~~-~~~~~IIf~~tr~~~e~la~~L~~~gi~~~~~hg~l~~~~R~~~~ 77 (184)
+.++|++ . |..+....|...|.+.+.... .+.++||||+|++.++.+++.|.+.|+++..+||++++ |+..+
T Consensus 437 Pt~kp~~r~~~~~~v~~t~~~K~~aL~~~i~~~~~~~~pvLIft~t~~~se~L~~~L~~~gi~~~~Lhg~~~~--rE~~i 514 (656)
T PRK12898 437 PTNRPSQRRHLPDEVFLTAAAKWAAVAARVRELHAQGRPVLVGTRSVAASERLSALLREAGLPHQVLNAKQDA--EEAAI 514 (656)
T ss_pred CCCCCccceecCCEEEeCHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCCEEEeeCCcHH--HHHHH
Confidence 4556665 2 333334468888998886532 35789999999999999999999999999999998654 44555
Q ss_pred HHHhccCceEEEEEeecccHHHHHHHHHhc---CCc----EEEeeCCCChHHHHHHHHHhhCCC
Q psy437 78 MKWISNKVHVGHWTVVSKECDSVAAALAQE---RIN----AISYHAGLADKLRNEVQMKWISNK 134 (184)
Q Consensus 78 ~~f~~g~~~vlVaT~tr~~~e~~a~gL~~~---gi~----~~vih~~~p~~~r~~~~~~f~~~~ 134 (184)
..+..+...|+|||+ .++||+|++ +|. .+|||+++|.+.|.|.|+..++|.
T Consensus 515 i~~ag~~g~VlVATd------mAgRGtDI~l~~~V~~~GGLhVI~~d~P~s~r~y~hr~GRTGR 572 (656)
T PRK12898 515 VARAGQRGRITVATN------MAGRGTDIKLEPGVAARGGLHVILTERHDSARIDRQLAGRCGR 572 (656)
T ss_pred HHHcCCCCcEEEEcc------chhcccCcCCccchhhcCCCEEEEcCCCCCHHHHHHhcccccC
Confidence 555555667999999 889999998 553 289999999999999999977654
No 72
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=99.52 E-value=1.6e-13 Score=121.70 Aligned_cols=111 Identities=14% Similarity=0.118 Sum_probs=98.6
Q ss_pred EccChHHHHHHHHHhh-cCCCcEEEEeccHHHHHHHHHHHHhCCCeeEEecCCCCHHHHHHHHHHHhccCceEEEEEeec
Q psy437 16 PKKNVLKEVISLIKAK-YSGQSGIVYCLTRKECDSVAAALAQERINAISYHAGLADKLRNEVQMKWISNKVHVGHWTVVS 94 (184)
Q Consensus 16 ~~~~k~~~L~~~l~~~-~~~~~~IIf~~tr~~~e~la~~L~~~gi~~~~~hg~l~~~~R~~~~~~f~~g~~~vlVaT~tr 94 (184)
+...++..|.+.|++. ..+.++||||+|++.++.+++.|.+.|+++.++||++++.+|.+++..|+.|++.|+|||+
T Consensus 423 ~~~~qi~~Ll~eI~~~~~~g~~vLIf~~tk~~ae~L~~~L~~~gi~~~~lh~~~~~~eR~~~l~~fr~G~i~VLV~t~-- 500 (655)
T TIGR00631 423 PTDGQVDDLLSEIRQRVARNERVLVTTLTKKMAEDLTDYLKELGIKVRYLHSEIDTLERVEIIRDLRLGEFDVLVGIN-- 500 (655)
T ss_pred eccchHHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHhhhccceeeeeCCCCHHHHHHHHHHHhcCCceEEEEcC--
Confidence 3445777777777643 2567899999999999999999999999999999999999999999999999999999999
Q ss_pred ccHHHHHHHHHhcCCcEEEeeCC-----CChHHHHHHHHHhhCC
Q psy437 95 KECDSVAAALAQERINAISYHAG-----LADKLRNEVQMKWISN 133 (184)
Q Consensus 95 ~~~e~~a~gL~~~gi~~~vih~~-----~p~~~r~~~~~~f~~~ 133 (184)
.+++|++.++++ +|++.+ +|.+.+.|+|+.+|.|
T Consensus 501 ----~L~rGfDiP~v~-lVvi~DadifG~p~~~~~~iqriGRag 539 (655)
T TIGR00631 501 ----LLREGLDLPEVS-LVAILDADKEGFLRSERSLIQTIGRAA 539 (655)
T ss_pred ----hhcCCeeeCCCc-EEEEeCcccccCCCCHHHHHHHhcCCC
Confidence 899999999999 887776 8999999999997654
No 73
>KOG0339|consensus
Probab=99.52 E-value=5e-14 Score=118.58 Aligned_cols=108 Identities=17% Similarity=0.131 Sum_probs=98.5
Q ss_pred ChHHHHHHHHHhhcCCCcEEEEeccHHHHHHHHHHHHhCCCeeEEecCCCCHHHHHHHHHHHhccCceEEEEEeecccHH
Q psy437 19 NVLKEVISLIKAKYSGQSGIVYCLTRKECDSVAAALAQERINAISYHAGLADKLRNEVQMKWISNKVHVGHWTVVSKECD 98 (184)
Q Consensus 19 ~k~~~L~~~l~~~~~~~~~IIf~~tr~~~e~la~~L~~~gi~~~~~hg~l~~~~R~~~~~~f~~g~~~vlVaT~tr~~~e 98 (184)
.|+..|+..|-.....++.|||+..+.+++.++..|...|+++..+||+|+|.+|.+++.+|+++..+|+|+|+
T Consensus 453 ~Kl~wl~~~L~~f~S~gkvlifVTKk~~~e~i~a~Lklk~~~v~llhgdkdqa~rn~~ls~fKkk~~~VlvatD------ 526 (731)
T KOG0339|consen 453 KKLNWLLRHLVEFSSEGKVLIFVTKKADAEEIAANLKLKGFNVSLLHGDKDQAERNEVLSKFKKKRKPVLVATD------ 526 (731)
T ss_pred HHHHHHHHHhhhhccCCcEEEEEeccCCHHHHHHHhccccceeeeecCchhhHHHHHHHHHHhhcCCceEEEee------
Confidence 37777777775544557899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCcEEEeeCCCChHHHHHHHHHhhCC
Q psy437 99 SVAAALAQERINAISYHAGLADKLRNEVQMKWISN 133 (184)
Q Consensus 99 ~~a~gL~~~gi~~~vih~~~p~~~r~~~~~~f~~~ 133 (184)
..|+|||++.++ .|+++|+-.+++.++|+..+.|
T Consensus 527 vaargldI~~ik-TVvnyD~ardIdththrigrtg 560 (731)
T KOG0339|consen 527 VAARGLDIPSIK-TVVNYDFARDIDTHTHRIGRTG 560 (731)
T ss_pred HhhcCCCccccc-eeecccccchhHHHHHHhhhcc
Confidence 999999999999 9999999999999999996654
No 74
>KOG0339|consensus
Probab=99.52 E-value=1.5e-13 Score=115.68 Aligned_cols=134 Identities=16% Similarity=0.119 Sum_probs=116.7
Q ss_pred CCcEEEEeccHHHHHHHHHHHHh----CCCeeEEecCCCCHHHHHHHHHHHhccCceEEEEEeec---------------
Q psy437 34 GQSGIVYCLTRKECDSVAAALAQ----ERINAISYHAGLADKLRNEVQMKWISNKVHVGHWTVVS--------------- 94 (184)
Q Consensus 34 ~~~~IIf~~tr~~~e~la~~L~~----~gi~~~~~hg~l~~~~R~~~~~~f~~g~~~vlVaT~tr--------------- 94 (184)
++-++|.|+|++.|.++...-++ -|+++.+.|||.+..+....|+ ....+||||+.|
T Consensus 296 gPi~vilvPTrela~Qi~~eaKkf~K~ygl~~v~~ygGgsk~eQ~k~Lk----~g~EivVaTPgRlid~VkmKatn~~rv 371 (731)
T KOG0339|consen 296 GPIGVILVPTRELASQIFSEAKKFGKAYGLRVVAVYGGGSKWEQSKELK----EGAEIVVATPGRLIDMVKMKATNLSRV 371 (731)
T ss_pred CCeEEEEeccHHHHHHHHHHHHHhhhhccceEEEeecCCcHHHHHHhhh----cCCeEEEechHHHHHHHHhhcccceee
Confidence 34467889999999998665544 3889999999999877666655 356789999999
Q ss_pred --------------------------------------------------------------------------------
Q psy437 95 -------------------------------------------------------------------------------- 94 (184)
Q Consensus 95 -------------------------------------------------------------------------------- 94 (184)
T Consensus 372 S~LV~DEadrmfdmGfe~qVrSI~~hirpdrQtllFsaTf~~kIe~lard~L~dpVrvVqg~vgean~dITQ~V~V~~s~ 451 (731)
T KOG0339|consen 372 SYLVLDEADRMFDMGFEPQVRSIKQHIRPDRQTLLFSATFKKKIEKLARDILSDPVRVVQGEVGEANEDITQTVSVCPSE 451 (731)
T ss_pred eEEEEechhhhhccccHHHHHHHHhhcCCcceEEEeeccchHHHHHHHHHHhcCCeeEEEeehhccccchhheeeeccCc
Confidence
Q ss_pred ---------------------------ccHHHHHHHHHhcCCcEEEeeCCCChHHHHHHHHHhhCCCceEEEE-------
Q psy437 95 ---------------------------KECDSVAAALAQERINAISYHAGLADKLRNEVQMKWISNKVHLYNV------- 140 (184)
Q Consensus 95 ---------------------------~~~e~~a~gL~~~gi~~~vih~~~p~~~r~~~~~~f~~~~~~v~va------- 140 (184)
.++|.++.-|...|+++..+|+++.|..|+.+...|+.+..+|++|
T Consensus 452 ~~Kl~wl~~~L~~f~S~gkvlifVTKk~~~e~i~a~Lklk~~~v~llhgdkdqa~rn~~ls~fKkk~~~VlvatDvaarg 531 (731)
T KOG0339|consen 452 EKKLNWLLRHLVEFSSEGKVLIFVTKKADAEEIAANLKLKGFNVSLLHGDKDQAERNEVLSKFKKKRKPVLVATDVAARG 531 (731)
T ss_pred HHHHHHHHHHhhhhccCCcEEEEEeccCCHHHHHHHhccccceeeeecCchhhHHHHHHHHHHhhcCCceEEEeeHhhcC
Confidence 3789999999999999999999999999999999999999999999
Q ss_pred EecCCccEEEecCCCCCccccccccccccCCcc
Q psy437 141 WKIQWKRIIWIHSLVLIKPDYLPPILDLRLGRE 173 (184)
Q Consensus 141 ~D~~~vr~v~~~~~p~~~e~y~~~i~~~~~~r~ 173 (184)
+|+++++.|+|||.-.+.|.|.|+|. |.||+
T Consensus 532 ldI~~ikTVvnyD~ardIdththrig--rtgRa 562 (731)
T KOG0339|consen 532 LDIPSIKTVVNYDFARDIDTHTHRIG--RTGRA 562 (731)
T ss_pred CCccccceeecccccchhHHHHHHhh--hcccc
Confidence 59999999999999999999999995 55554
No 75
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process
Probab=99.50 E-value=4.8e-13 Score=94.76 Aligned_cols=115 Identities=19% Similarity=0.255 Sum_probs=90.6
Q ss_pred eEEEEEEcc-ChHHHHHHHHHhhc-CCCcEEEEeccHHHHHHHHHHHHhCCCeeEEecCCCCHHHHHHHHHHHhccCceE
Q psy437 10 LKYEILPKK-NVLKEVISLIKAKY-SGQSGIVYCLTRKECDSVAAALAQERINAISYHAGLADKLRNEVQMKWISNKVHV 87 (184)
Q Consensus 10 l~y~v~~~~-~k~~~L~~~l~~~~-~~~~~IIf~~tr~~~e~la~~L~~~gi~~~~~hg~l~~~~R~~~~~~f~~g~~~v 87 (184)
|.+.+.+.. .|...+.+.+.+.. .+.++||||++...++.+++.|.+.+.++..+||+++..+|..+++.|.++...+
T Consensus 2 i~~~~~~~~~~k~~~i~~~i~~~~~~~~~~lvf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~i 81 (131)
T cd00079 2 IKQYVLPVEDEKLEALLELLKEHLKKGGKVLIFCPSKKMLDELAELLRKPGIKVAALHGDGSQEEREEVLKDFREGEIVV 81 (131)
T ss_pred cEEEEEECCHHHHHHHHHHHHhcccCCCcEEEEeCcHHHHHHHHHHHHhcCCcEEEEECCCCHHHHHHHHHHHHcCCCcE
Confidence 344444443 58888888887642 3678999999999999999999998999999999999999999999999999999
Q ss_pred EEEEeecccHHHHHHHHHhcCCcEEEeeCCCChHHHHHHHHHhh
Q psy437 88 GHWTVVSKECDSVAAALAQERINAISYHAGLADKLRNEVQMKWI 131 (184)
Q Consensus 88 lVaT~tr~~~e~~a~gL~~~gi~~~vih~~~p~~~r~~~~~~f~ 131 (184)
|++|. .++.|++.++.+ .+++.+.|.+...+.|...+
T Consensus 82 li~t~------~~~~G~d~~~~~-~vi~~~~~~~~~~~~Q~~GR 118 (131)
T cd00079 82 LVATD------VIARGIDLPNVS-VVINYDLPWSPSSYLQRIGR 118 (131)
T ss_pred EEEcC------hhhcCcChhhCC-EEEEeCCCCCHHHheecccc
Confidence 99999 556677766666 56666665555555555433
No 76
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=99.49 E-value=4.7e-13 Score=119.03 Aligned_cols=114 Identities=15% Similarity=0.152 Sum_probs=98.4
Q ss_pred EEEccChHHHHHHHHHhh-cCCCcEEEEeccHHHHHHHHHHHHhCCCeeEEecCCCCHHHHHHHHHHHhccCceEEEEEe
Q psy437 14 ILPKKNVLKEVISLIKAK-YSGQSGIVYCLTRKECDSVAAALAQERINAISYHAGLADKLRNEVQMKWISNKVHVGHWTV 92 (184)
Q Consensus 14 v~~~~~k~~~L~~~l~~~-~~~~~~IIf~~tr~~~e~la~~L~~~gi~~~~~hg~l~~~~R~~~~~~f~~g~~~vlVaT~ 92 (184)
+.+...++..|.+.|... ..+.++||||+|++.++.+++.|...|+++.++||++++.+|..++..|+.|++.++|+|+
T Consensus 425 ~~~~~~q~~~L~~~L~~~~~~g~~viIf~~t~~~ae~L~~~L~~~gi~~~~~h~~~~~~~R~~~l~~f~~g~i~vlV~t~ 504 (652)
T PRK05298 425 VRPTKGQVDDLLSEIRKRVAKGERVLVTTLTKRMAEDLTDYLKELGIKVRYLHSDIDTLERVEIIRDLRLGEFDVLVGIN 504 (652)
T ss_pred EeeccccHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHhhcceeEEEEECCCCHHHHHHHHHHHHcCCceEEEEeC
Confidence 334445677777777543 2467899999999999999999999999999999999999999999999999999999999
Q ss_pred ecccHHHHHHHHHhcCCcEEEeeCC-----CChHHHHHHHHHhhCCC
Q psy437 93 VSKECDSVAAALAQERINAISYHAG-----LADKLRNEVQMKWISNK 134 (184)
Q Consensus 93 tr~~~e~~a~gL~~~gi~~~vih~~-----~p~~~r~~~~~~f~~~~ 134 (184)
.+++|++.++++ +|++++ +|.+.+.|+|+.++.|.
T Consensus 505 ------~L~rGfdlp~v~-lVii~d~eifG~~~~~~~yiqr~GR~gR 544 (652)
T PRK05298 505 ------LLREGLDIPEVS-LVAILDADKEGFLRSERSLIQTIGRAAR 544 (652)
T ss_pred ------HHhCCccccCCc-EEEEeCCcccccCCCHHHHHHHhccccC
Confidence 999999999999 777766 48899999999977543
No 77
>KOG0350|consensus
Probab=99.49 E-value=1.1e-13 Score=116.19 Aligned_cols=106 Identities=11% Similarity=0.116 Sum_probs=93.7
Q ss_pred hHHHHHHHHHhhcCCCcEEEEeccHHHHHHHHHHHH----hCCCeeEEecCCCCHHHHHHHHHHHhccCceEEEEEeecc
Q psy437 20 VLKEVISLIKAKYSGQSGIVYCLTRKECDSVAAALA----QERINAISYHAGLADKLRNEVQMKWISNKVHVGHWTVVSK 95 (184)
Q Consensus 20 k~~~L~~~l~~~~~~~~~IIf~~tr~~~e~la~~L~----~~gi~~~~~hg~l~~~~R~~~~~~f~~g~~~vlVaT~tr~ 95 (184)
|--.+..+|... +..++|+|+++.+.+..+++.|. ..++++..|.|+++.+.|.+.++.|.+|++++|||++
T Consensus 416 kpl~~~~lI~~~-k~~r~lcf~~S~~sa~Rl~~~L~v~~~~~~~~~s~~t~~l~~k~r~k~l~~f~~g~i~vLIcSD--- 491 (620)
T KOG0350|consen 416 KPLAVYALITSN-KLNRTLCFVNSVSSANRLAHVLKVEFCSDNFKVSEFTGQLNGKRRYKMLEKFAKGDINVLICSD--- 491 (620)
T ss_pred chHhHHHHHHHh-hcceEEEEecchHHHHHHHHHHHHHhccccchhhhhhhhhhHHHHHHHHHHHhcCCceEEEehh---
Confidence 455566666543 67889999999999999999887 3467788899999999999999999999999999999
Q ss_pred cHHHHHHHHHhcCCcEEEeeCCCChHHHHHHHHHhhCC
Q psy437 96 ECDSVAAALAQERINAISYHAGLADKLRNEVQMKWISN 133 (184)
Q Consensus 96 ~~e~~a~gL~~~gi~~~vih~~~p~~~r~~~~~~f~~~ 133 (184)
.+|||+|..+++ .||||++|.+.+.|+||.++.+
T Consensus 492 ---~laRGiDv~~v~-~VINYd~P~~~ktyVHR~GRTA 525 (620)
T KOG0350|consen 492 ---ALARGIDVNDVD-NVINYDPPASDKTYVHRAGRTA 525 (620)
T ss_pred ---hhhcCCcccccc-eEeecCCCchhhHHHHhhcccc
Confidence 999999999999 9999999999999999996643
No 78
>KOG0349|consensus
Probab=99.49 E-value=4.6e-14 Score=117.05 Aligned_cols=100 Identities=17% Similarity=0.213 Sum_probs=91.1
Q ss_pred HHHhhcCCCcEEEEeccHHHHHHHHHHHHhCC---CeeEEecCCCCHHHHHHHHHHHhccCceEEEEEeecccHHHHHHH
Q psy437 27 LIKAKYSGQSGIVYCLTRKECDSVAAALAQER---INAISYHAGLADKLRNEVQMKWISNKVHVGHWTVVSKECDSVAAA 103 (184)
Q Consensus 27 ~l~~~~~~~~~IIf~~tr~~~e~la~~L~~~g---i~~~~~hg~l~~~~R~~~~~~f~~g~~~vlVaT~tr~~~e~~a~g 103 (184)
.+++ +...++||||.|+.+|+.+.+.|.+.| +++..+||+..+.+|.+.++.|++++++.||||+ .+|+|
T Consensus 499 ai~~-h~mdkaiifcrtk~dcDnLer~~~qkgg~~~scvclhgDrkP~Erk~nle~Fkk~dvkflictd------vaarg 571 (725)
T KOG0349|consen 499 AIRR-HAMDKAIIFCRTKQDCDNLERMMNQKGGKHYSCVCLHGDRKPDERKANLESFKKFDVKFLICTD------VAARG 571 (725)
T ss_pred hhhh-hccCceEEEEeccccchHHHHHHHHcCCccceeEEEecCCChhHHHHHHHhhhhcCeEEEEEeh------hhhcc
Confidence 3444 377899999999999999999998864 6899999999999999999999999999999999 99999
Q ss_pred HHhcCCcEEEeeCCCChHHHHHHHHHhhCCC
Q psy437 104 LAQERINAISYHAGLADKLRNEVQMKWISNK 134 (184)
Q Consensus 104 L~~~gi~~~vih~~~p~~~r~~~~~~f~~~~ 134 (184)
||+.|++ ++||.-+|.+..+|+||..+-|.
T Consensus 572 ldi~g~p-~~invtlpd~k~nyvhrigrvgr 601 (725)
T KOG0349|consen 572 LDITGLP-FMINVTLPDDKTNYVHRIGRVGR 601 (725)
T ss_pred ccccCCc-eEEEEecCcccchhhhhhhccch
Confidence 9999999 99999999999999999976654
No 79
>PRK09401 reverse gyrase; Reviewed
Probab=99.47 E-value=1.3e-13 Score=128.64 Aligned_cols=114 Identities=15% Similarity=0.174 Sum_probs=89.0
Q ss_pred CCeEEEEEEccChHHHHHHHHHhhcCCCcEEEEeccHHH---HHHHHHHHHhCCCeeEEecCCCCHHHHHHHHHHHhccC
Q psy437 8 ANLKYEILPKKNVLKEVISLIKAKYSGQSGIVYCLTRKE---CDSVAAALAQERINAISYHAGLADKLRNEVQMKWISNK 84 (184)
Q Consensus 8 ~Nl~y~v~~~~~k~~~L~~~l~~~~~~~~~IIf~~tr~~---~e~la~~L~~~gi~~~~~hg~l~~~~R~~~~~~f~~g~ 84 (184)
.|+........++...|..+++. .+.++||||+|+.. ++.+++.|...|+++..+||+| .+.+++|++|+
T Consensus 304 rnI~~~yi~~~~k~~~L~~ll~~--l~~~~LIFv~t~~~~~~ae~l~~~L~~~gi~v~~~hg~l-----~~~l~~F~~G~ 376 (1176)
T PRK09401 304 RNIVDSYIVDEDSVEKLVELVKR--LGDGGLIFVPSDKGKEYAEELAEYLEDLGINAELAISGF-----ERKFEKFEEGE 376 (1176)
T ss_pred CCceEEEEEcccHHHHHHHHHHh--cCCCEEEEEecccChHHHHHHHHHHHHCCCcEEEEeCcH-----HHHHHHHHCCC
Confidence 45543333333677788888865 34689999999877 9999999999999999999999 23459999999
Q ss_pred ceEEEEEeecccHHHHHHHHHhcC-CcEEEeeCCCCh------HHHHHHHHHhh
Q psy437 85 VHVGHWTVVSKECDSVAAALAQER-INAISYHAGLAD------KLRNEVQMKWI 131 (184)
Q Consensus 85 ~~vlVaT~tr~~~e~~a~gL~~~g-i~~~vih~~~p~------~~r~~~~~~f~ 131 (184)
++|||||.+.-+ .+|||||.++ |+ +|||+|+|. ....+.|+.++
T Consensus 377 ~~VLVatas~td--v~aRGIDiP~~Ir-yVI~y~vP~~~~~~~~~~~~~~~~~r 427 (1176)
T PRK09401 377 VDVLVGVASYYG--VLVRGIDLPERIR-YAIFYGVPKFKFSLEEELAPPFLLLR 427 (1176)
T ss_pred CCEEEEecCCCC--ceeecCCCCccee-EEEEeCCCCEEEeccccccCHHHHHH
Confidence 999999643211 7899999999 88 999999999 55556665543
No 80
>KOG0342|consensus
Probab=99.47 E-value=3e-13 Score=113.28 Aligned_cols=76 Identities=11% Similarity=0.031 Sum_probs=68.4
Q ss_pred ccHHHHHHHHHhcCCcEEEeeCCCChHHHHHHHHHhhCCCceEEEE-------EecCCccEEEecCCCCCcccccccccc
Q psy437 95 KECDSVAAALAQERINAISYHAGLADKLRNEVQMKWISNKVHLYNV-------WKIQWKRIIWIHSLVLIKPDYLPPILD 167 (184)
Q Consensus 95 ~~~e~~a~gL~~~gi~~~vih~~~p~~~r~~~~~~f~~~~~~v~va-------~D~~~vr~v~~~~~p~~~e~y~~~i~~ 167 (184)
..+.-.|.-|..-++++.-||+++||+.|+-+-..|+..+.-|+++ .|+|+|.||+.+++|++.++|+||++
T Consensus 341 ~~vk~~~~lL~~~dlpv~eiHgk~~Q~kRT~~~~~F~kaesgIL~cTDVaARGlD~P~V~~VvQ~~~P~d~~~YIHRvG- 419 (543)
T KOG0342|consen 341 MSVKFHAELLNYIDLPVLEIHGKQKQNKRTSTFFEFCKAESGILVCTDVAARGLDIPDVDWVVQYDPPSDPEQYIHRVG- 419 (543)
T ss_pred hHHHHHHHHHhhcCCchhhhhcCCcccccchHHHHHhhcccceEEecchhhccCCCCCceEEEEeCCCCCHHHHHHHhc-
Confidence 3566777888888999999999999999999999999998888888 59999999999999999999999995
Q ss_pred ccCCc
Q psy437 168 LRLGR 172 (184)
Q Consensus 168 ~~~~r 172 (184)
|-||
T Consensus 420 -RTaR 423 (543)
T KOG0342|consen 420 -RTAR 423 (543)
T ss_pred -cccc
Confidence 5555
No 81
>PRK10689 transcription-repair coupling factor; Provisional
Probab=99.46 E-value=7.5e-13 Score=123.39 Aligned_cols=91 Identities=15% Similarity=0.112 Sum_probs=82.8
Q ss_pred CCCcEEEEeccHHHHHHHHHHHHhC--CCeeEEecCCCCHHHHHHHHHHHhccCceEEEEEeecccHHHHHHHHHhcCCc
Q psy437 33 SGQSGIVYCLTRKECDSVAAALAQE--RINAISYHAGLADKLRNEVQMKWISNKVHVGHWTVVSKECDSVAAALAQERIN 110 (184)
Q Consensus 33 ~~~~~IIf~~tr~~~e~la~~L~~~--gi~~~~~hg~l~~~~R~~~~~~f~~g~~~vlVaT~tr~~~e~~a~gL~~~gi~ 110 (184)
.+++++|||++++.++.+++.|.+. ++++..+||+|++++|.+++.+|++|+.+|||||+ .+++|+|.++++
T Consensus 808 r~gqv~vf~n~i~~ie~la~~L~~~~p~~~v~~lHG~m~q~eRe~im~~Fr~Gk~~VLVaTd------IierGIDIP~v~ 881 (1147)
T PRK10689 808 RGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTT------IIETGIDIPTAN 881 (1147)
T ss_pred cCCeEEEEECCHHHHHHHHHHHHHhCCCCcEEEEeCCCCHHHHHHHHHHHHhcCCCEEEECc------hhhcccccccCC
Confidence 4578999999999999999999986 78899999999999999999999999999999999 999999999999
Q ss_pred EEEe-----eCCCChHHHHHHHHHhhCCC
Q psy437 111 AISY-----HAGLADKLRNEVQMKWISNK 134 (184)
Q Consensus 111 ~~vi-----h~~~p~~~r~~~~~~f~~~~ 134 (184)
+|+ |+|+|+ |+|+.+|.|.
T Consensus 882 -~VIi~~ad~fglaq----~~Qr~GRvGR 905 (1147)
T PRK10689 882 -TIIIERADHFGLAQ----LHQLRGRVGR 905 (1147)
T ss_pred -EEEEecCCCCCHHH----HHHHhhccCC
Confidence 665 888875 8999877654
No 82
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=99.46 E-value=2.9e-12 Score=114.63 Aligned_cols=140 Identities=13% Similarity=0.101 Sum_probs=116.5
Q ss_pred CCCcEEEEeccHHHHHHHHHHHHh----CCCeeEEecCCCCHHHHHHHHHHHhccCceEEEEEeec--------------
Q psy437 33 SGQSGIVYCLTRKECDSVAAALAQ----ERINAISYHAGLADKLRNEVQMKWISNKVHVGHWTVVS-------------- 94 (184)
Q Consensus 33 ~~~~~IIf~~tr~~~e~la~~L~~----~gi~~~~~hg~l~~~~R~~~~~~f~~g~~~vlVaT~tr-------------- 94 (184)
.+.++++.+||+..|.++++.+++ .|+++..+||+++..+|...+..+.+|+..|+|+|+++
T Consensus 309 ~g~q~lilaPT~~LA~Q~~~~l~~l~~~~~i~v~ll~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~~v~~~~l~lvV 388 (681)
T PRK10917 309 AGYQAALMAPTEILAEQHYENLKKLLEPLGIRVALLTGSLKGKERREILEAIASGEADIVIGTHALIQDDVEFHNLGLVI 388 (681)
T ss_pred cCCeEEEEeccHHHHHHHHHHHHHHHhhcCcEEEEEcCCCCHHHHHHHHHHHhCCCCCEEEchHHHhcccchhcccceEE
Confidence 567899999999999999888775 37899999999999999999999999999999998765
Q ss_pred --------------------------------------------------------------------------------
Q psy437 95 -------------------------------------------------------------------------------- 94 (184)
Q Consensus 95 -------------------------------------------------------------------------------- 94 (184)
T Consensus 389 IDE~Hrfg~~qr~~l~~~~~~~~iL~~SATp~prtl~~~~~g~~~~s~i~~~p~~r~~i~~~~~~~~~~~~~~~~i~~~~ 468 (681)
T PRK10917 389 IDEQHRFGVEQRLALREKGENPHVLVMTATPIPRTLAMTAYGDLDVSVIDELPPGRKPITTVVIPDSRRDEVYERIREEI 468 (681)
T ss_pred EechhhhhHHHHHHHHhcCCCCCEEEEeCCCCHHHHHHHHcCCCceEEEecCCCCCCCcEEEEeCcccHHHHHHHHHHHH
Confidence
Q ss_pred ---------------------ccHHHHHHHHHhc--CCcEEEeeCCCChHHHHHHHHHhhCCCceEEEE-------EecC
Q psy437 95 ---------------------KECDSVAAALAQE--RINAISYHAGLADKLRNEVQMKWISNKVHLYNV-------WKIQ 144 (184)
Q Consensus 95 ---------------------~~~e~~a~gL~~~--gi~~~vih~~~p~~~r~~~~~~f~~~~~~v~va-------~D~~ 144 (184)
..++.++..|... ++++..+|++|++..|..+.+.|++|++.|+|+ +|+|
T Consensus 469 ~~g~q~~v~~~~ie~s~~l~~~~~~~~~~~L~~~~~~~~v~~lHG~m~~~eR~~i~~~F~~g~~~ILVaT~vie~GiDip 548 (681)
T PRK10917 469 AKGRQAYVVCPLIEESEKLDLQSAEETYEELQEAFPELRVGLLHGRMKPAEKDAVMAAFKAGEIDILVATTVIEVGVDVP 548 (681)
T ss_pred HcCCcEEEEEcccccccchhHHHHHHHHHHHHHHCCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEECcceeeCcccC
Confidence 0123344455432 578899999999999999999999999999999 6999
Q ss_pred CccEEEecCCCCCcccccc-ccccccCCccc
Q psy437 145 WKRIIWIHSLVLIKPDYLP-PILDLRLGRED 174 (184)
Q Consensus 145 ~vr~v~~~~~p~~~e~y~~-~i~~~~~~r~~ 174 (184)
+++.|++++.|....+|+| ++ +|+||.+
T Consensus 549 ~v~~VIi~~~~r~gls~lhQ~~--GRvGR~g 577 (681)
T PRK10917 549 NATVMVIENAERFGLAQLHQLR--GRVGRGA 577 (681)
T ss_pred CCcEEEEeCCCCCCHHHHHHHh--hcccCCC
Confidence 9999999999986555554 66 6888863
No 83
>KOG0326|consensus
Probab=99.45 E-value=1.1e-13 Score=110.83 Aligned_cols=109 Identities=17% Similarity=0.158 Sum_probs=92.9
Q ss_pred EEecCCCCHHHHHHHHHHHhc-cCc-eEEEEEeecccHHHHHHHHHhcCCcEEEeeCCCChHHHHHHHHHhhCCCceEEE
Q psy437 62 ISYHAGLADKLRNEVQMKWIS-NKV-HVGHWTVVSKECDSVAAALAQERINAISYHAGLADKLRNEVQMKWISNKVHLYN 139 (184)
Q Consensus 62 ~~~hg~l~~~~R~~~~~~f~~-g~~-~vlVaT~tr~~~e~~a~gL~~~gi~~~vih~~~p~~~r~~~~~~f~~~~~~v~v 139 (184)
.-|++-....++...+.-+.+ -++ +.||+|++-+.+|.+|..+..-|.+|+-+|+.|.|+.|+.+--.|+.|.++.+|
T Consensus 298 tQyYafV~e~qKvhCLntLfskLqINQsIIFCNS~~rVELLAkKITelGyscyyiHakM~Q~hRNrVFHdFr~G~crnLV 377 (459)
T KOG0326|consen 298 TQYYAFVEERQKVHCLNTLFSKLQINQSIIFCNSTNRVELLAKKITELGYSCYYIHAKMAQEHRNRVFHDFRNGKCRNLV 377 (459)
T ss_pred hhheeeechhhhhhhHHHHHHHhcccceEEEeccchHhHHHHHHHHhccchhhHHHHHHHHhhhhhhhhhhhccccceee
Confidence 335555555555555655443 233 579999999999999999999999999999999999999999999999999999
Q ss_pred E-------EecCCccEEEecCCCCCccccccccccccCCc
Q psy437 140 V-------WKIQWKRIIWIHSLVLIKPDYLPPILDLRLGR 172 (184)
Q Consensus 140 a-------~D~~~vr~v~~~~~p~~~e~y~~~i~~~~~~r 172 (184)
+ +|++.+..|||||.|+++|.|+|||+ |.||
T Consensus 378 ctDL~TRGIDiqavNvVINFDfpk~aEtYLHRIG--RsGR 415 (459)
T KOG0326|consen 378 CTDLFTRGIDIQAVNVVINFDFPKNAETYLHRIG--RSGR 415 (459)
T ss_pred ehhhhhcccccceeeEEEecCCCCCHHHHHHHcc--CCcc
Confidence 9 59999999999999999999999995 5555
No 84
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=99.45 E-value=2.6e-12 Score=117.66 Aligned_cols=139 Identities=14% Similarity=0.084 Sum_probs=120.8
Q ss_pred CCCcEEEEeccHHHHHHHHHHHHhC----CCeeEEecCCCCHHHHHHHHHHHhccCceEEEEEeec--------------
Q psy437 33 SGQSGIVYCLTRKECDSVAAALAQE----RINAISYHAGLADKLRNEVQMKWISNKVHVGHWTVVS-------------- 94 (184)
Q Consensus 33 ~~~~~IIf~~tr~~~e~la~~L~~~----gi~~~~~hg~l~~~~R~~~~~~f~~g~~~vlVaT~tr-------------- 94 (184)
.+.+++|.+||+..|.+.++.+.+. ++++..++|+.+..++..+++.+.+|+.+|||+|+..
T Consensus 499 ~g~qvlvLvPT~~LA~Q~~~~f~~~~~~~~i~v~~Lsg~~~~~e~~~~~~~l~~g~~dIVIGTp~ll~~~v~f~~L~llV 578 (926)
T TIGR00580 499 DGKQVAVLVPTTLLAQQHFETFKERFANFPVTIELLSRFRSAKEQNEILKELASGKIDILIGTHKLLQKDVKFKDLGLLI 578 (926)
T ss_pred hCCeEEEEeCcHHHHHHHHHHHHHHhccCCcEEEEEeccccHHHHHHHHHHHHcCCceEEEchHHHhhCCCCcccCCEEE
Confidence 4578999999999999999988753 6788889999999999999999999999998888733
Q ss_pred --------------------------------------------------------------------------------
Q psy437 95 -------------------------------------------------------------------------------- 94 (184)
Q Consensus 95 -------------------------------------------------------------------------------- 94 (184)
T Consensus 579 IDEahrfgv~~~~~L~~~~~~~~vL~~SATpiprtl~~~l~g~~d~s~I~~~p~~R~~V~t~v~~~~~~~i~~~i~~el~ 658 (926)
T TIGR00580 579 IDEEQRFGVKQKEKLKELRTSVDVLTLSATPIPRTLHMSMSGIRDLSIIATPPEDRLPVRTFVMEYDPELVREAIRRELL 658 (926)
T ss_pred eecccccchhHHHHHHhcCCCCCEEEEecCCCHHHHHHHHhcCCCcEEEecCCCCccceEEEEEecCHHHHHHHHHHHHH
Confidence
Q ss_pred ------------ccHHHHHHHHHh--cCCcEEEeeCCCChHHHHHHHHHhhCCCceEEEE-------EecCCccEEEecC
Q psy437 95 ------------KECDSVAAALAQ--ERINAISYHAGLADKLRNEVQMKWISNKVHLYNV-------WKIQWKRIIWIHS 153 (184)
Q Consensus 95 ------------~~~e~~a~gL~~--~gi~~~vih~~~p~~~r~~~~~~f~~~~~~v~va-------~D~~~vr~v~~~~ 153 (184)
..++.++..|.. +++++.++|++|++..|..+.+.|++|+..|+|+ +|+|+++.|++++
T Consensus 659 ~g~qv~if~n~i~~~e~l~~~L~~~~p~~~v~~lHG~m~~~eRe~im~~F~~Gk~~ILVaT~iie~GIDIp~v~~VIi~~ 738 (926)
T TIGR00580 659 RGGQVFYVHNRIESIEKLATQLRELVPEARIAIAHGQMTENELEEVMLEFYKGEFQVLVCTTIIETGIDIPNANTIIIER 738 (926)
T ss_pred cCCeEEEEECCcHHHHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHHHHHcCCCCEEEECChhhcccccccCCEEEEec
Confidence 357788888876 6889999999999999999999999999999999 6999999999999
Q ss_pred CCC-CccccccccccccCCcc
Q psy437 154 LVL-IKPDYLPPILDLRLGRE 173 (184)
Q Consensus 154 ~p~-~~e~y~~~i~~~~~~r~ 173 (184)
.|. ...+|+|+++ |+||.
T Consensus 739 a~~~gls~l~Qr~G--RvGR~ 757 (926)
T TIGR00580 739 ADKFGLAQLYQLRG--RVGRS 757 (926)
T ss_pred CCCCCHHHHHHHhc--CCCCC
Confidence 876 4668999984 66664
No 85
>PTZ00424 helicase 45; Provisional
Probab=99.44 E-value=4.1e-13 Score=112.84 Aligned_cols=89 Identities=13% Similarity=0.159 Sum_probs=83.2
Q ss_pred CceEEEEEeecccHHHHHHHHHhcCCcEEEeeCCCChHHHHHHHHHhhCCCceEEEE-------EecCCccEEEecCCCC
Q psy437 84 KVHVGHWTVVSKECDSVAAALAQERINAISYHAGLADKLRNEVQMKWISNKVHLYNV-------WKIQWKRIIWIHSLVL 156 (184)
Q Consensus 84 ~~~vlVaT~tr~~~e~~a~gL~~~gi~~~vih~~~p~~~r~~~~~~f~~~~~~v~va-------~D~~~vr~v~~~~~p~ 156 (184)
..++||+|+++..|+.++..|...++.+..+|+++|+..|..+.+.|++|++.|+|+ +|+|++++|+++++|.
T Consensus 267 ~~~~ivF~~t~~~~~~l~~~l~~~~~~~~~~h~~~~~~~R~~i~~~f~~g~~~vLvaT~~l~~GiDip~v~~VI~~~~p~ 346 (401)
T PTZ00424 267 ITQAIIYCNTRRKVDYLTKKMHERDFTVSCMHGDMDQKDRDLIMREFRSGSTRVLITTDLLARGIDVQQVSLVINYDLPA 346 (401)
T ss_pred CCeEEEEecCcHHHHHHHHHHHHCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEEcccccCCcCcccCCEEEEECCCC
Confidence 357899999999999999999999999999999999999999999999999999999 6999999999999999
Q ss_pred CccccccccccccCCccc
Q psy437 157 IKPDYLPPILDLRLGRED 174 (184)
Q Consensus 157 ~~e~y~~~i~~~~~~r~~ 174 (184)
+..+|+|+++ |+||.+
T Consensus 347 s~~~y~qr~G--RagR~g 362 (401)
T PTZ00424 347 SPENYIHRIG--RSGRFG 362 (401)
T ss_pred CHHHEeeccc--ccccCC
Confidence 9999999994 777753
No 86
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=99.43 E-value=8.8e-13 Score=118.07 Aligned_cols=105 Identities=16% Similarity=0.183 Sum_probs=94.9
Q ss_pred hHHHHHHHHHhhcCCCcEEEEeccHHHHHHHHHHHHhCC-CeeEEecCCCCHHHHHHHHHHHhccCceEEEEEeecccHH
Q psy437 20 VLKEVISLIKAKYSGQSGIVYCLTRKECDSVAAALAQER-INAISYHAGLADKLRNEVQMKWISNKVHVGHWTVVSKECD 98 (184)
Q Consensus 20 k~~~L~~~l~~~~~~~~~IIf~~tr~~~e~la~~L~~~g-i~~~~~hg~l~~~~R~~~~~~f~~g~~~vlVaT~tr~~~e 98 (184)
....+.++++++ .+++||+|||..+|.++..|.+.+ ..+...||+++.+.|..+.++|++|+.+++|||+
T Consensus 242 ~~~~i~~~v~~~---~ttLIF~NTR~~aE~l~~~L~~~~~~~i~~HHgSlSre~R~~vE~~lk~G~lravV~TS------ 312 (814)
T COG1201 242 LYERIAELVKKH---RTTLIFTNTRSGAERLAFRLKKLGPDIIEVHHGSLSRELRLEVEERLKEGELKAVVATS------ 312 (814)
T ss_pred HHHHHHHHHhhc---CcEEEEEeChHHHHHHHHHHHHhcCCceeeecccccHHHHHHHHHHHhcCCceEEEEcc------
Confidence 456666666553 589999999999999999999886 8899999999999999999999999999999999
Q ss_pred HHHHHHHhcCCcEEEeeCCCChHHHHHHHHHhhCCC
Q psy437 99 SVAAALAQERINAISYHAGLADKLRNEVQMKWISNK 134 (184)
Q Consensus 99 ~~a~gL~~~gi~~~vih~~~p~~~r~~~~~~f~~~~ 134 (184)
.+--|+|.-+|+ .|+|++-|.+.-..+||.+++|.
T Consensus 313 SLELGIDiG~vd-lVIq~~SP~sV~r~lQRiGRsgH 347 (814)
T COG1201 313 SLELGIDIGDID-LVIQLGSPKSVNRFLQRIGRAGH 347 (814)
T ss_pred chhhccccCCce-EEEEeCCcHHHHHHhHhcccccc
Confidence 556699999999 99999999999999999988874
No 87
>KOG0348|consensus
Probab=99.42 E-value=1.2e-12 Score=110.79 Aligned_cols=116 Identities=14% Similarity=0.126 Sum_probs=99.2
Q ss_pred eEEEEEEccChHHHHHHHHHhh---cCCCcEEEEeccHHHHHHHHHHHHhC----------------------CCeeEEe
Q psy437 10 LKYEILPKKNVLKEVISLIKAK---YSGQSGIVYCLTRKECDSVAAALAQE----------------------RINAISY 64 (184)
Q Consensus 10 l~y~v~~~~~k~~~L~~~l~~~---~~~~~~IIf~~tr~~~e~la~~L~~~----------------------gi~~~~~ 64 (184)
.+|.|+|...++-.|..+|.+. ....++|||.++++.++.-...|.+. +.+..-+
T Consensus 398 qry~vVPpKLRLV~Laa~L~~~~k~~~~qk~iVF~S~~d~VeFHy~lf~~~l~~~~e~~s~~~~s~g~~~l~~~~k~~rL 477 (708)
T KOG0348|consen 398 QRYTVVPPKLRLVALAALLLNKVKFEEKQKMIVFFSCSDSVEFHYSLFSEALLSHLEGSSGAPDSEGLPPLFMDLKFYRL 477 (708)
T ss_pred hceEecCCchhHHHHHHHHHHHhhhhhhceeEEEEechhHHHHHHHHHHhhhhcccccccCCcccCCChhhhhcceEEEe
Confidence 3688888888888888887654 24567899999999999887777531 2456678
Q ss_pred cCCCCHHHHHHHHHHHhccCceEEEEEeecccHHHHHHHHHhcCCcEEEeeCCCChHHHHHHHHHhhC
Q psy437 65 HAGLADKLRNEVQMKWISNKVHVGHWTVVSKECDSVAAALAQERINAISYHAGLADKLRNEVQMKWIS 132 (184)
Q Consensus 65 hg~l~~~~R~~~~~~f~~g~~~vlVaT~tr~~~e~~a~gL~~~gi~~~vih~~~p~~~r~~~~~~f~~ 132 (184)
||+|+|++|..+++.|....-.||.||+ ++|||||-|.|. +|+.|+.|.+..+|+||..+.
T Consensus 478 HGsm~QeeRts~f~~Fs~~~~~VLLcTD------VAaRGLDlP~V~-~vVQYd~P~s~adylHRvGRT 538 (708)
T KOG0348|consen 478 HGSMEQEERTSVFQEFSHSRRAVLLCTD------VAARGLDLPHVG-LVVQYDPPFSTADYLHRVGRT 538 (708)
T ss_pred cCchhHHHHHHHHHhhccccceEEEehh------hhhccCCCCCcC-eEEEeCCCCCHHHHHHHhhhh
Confidence 9999999999999999998888999999 999999999999 999999999999999999654
No 88
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=99.42 E-value=9.1e-13 Score=119.40 Aligned_cols=96 Identities=16% Similarity=0.089 Sum_probs=87.1
Q ss_pred CCCcEEEEeccHHHHHHHHHHHHh---CCCeeEEecCCCCHHHHHHHHHHHhccCceEEEEEeecccHHHHHHHHHhcCC
Q psy437 33 SGQSGIVYCLTRKECDSVAAALAQ---ERINAISYHAGLADKLRNEVQMKWISNKVHVGHWTVVSKECDSVAAALAQERI 109 (184)
Q Consensus 33 ~~~~~IIf~~tr~~~e~la~~L~~---~gi~~~~~hg~l~~~~R~~~~~~f~~g~~~vlVaT~tr~~~e~~a~gL~~~gi 109 (184)
..+++||||+++.+++.+++.|.+ .++.+..+||+|++++|.++++.|.+|+.+|||||+ .+++||+++||
T Consensus 211 ~~g~iLVFlpg~~ei~~l~~~L~~~~~~~~~v~~Lhg~l~~~eq~~~~~~~~~G~rkVlvATn------IAErsLtIp~V 284 (812)
T PRK11664 211 ESGSLLLFLPGVGEIQRVQEQLASRVASDVLLCPLYGALSLAEQQKAILPAPAGRRKVVLATN------IAETSLTIEGI 284 (812)
T ss_pred CCCCEEEEcCCHHHHHHHHHHHHHhccCCceEEEeeCCCCHHHHHHHhccccCCCeEEEEecc------hHHhcccccCc
Confidence 467899999999999999999987 578899999999999999999999999999999999 99999999999
Q ss_pred cEEEeeCCCChHHH------------------HHHHHHhhCCCc
Q psy437 110 NAISYHAGLADKLR------------------NEVQMKWISNKV 135 (184)
Q Consensus 110 ~~~vih~~~p~~~r------------------~~~~~~f~~~~~ 135 (184)
+ +||+.|+|...+ ++.||..+.|..
T Consensus 285 ~-~VID~Gl~r~~~yd~~~g~~~L~~~~iSkasa~QR~GRaGR~ 327 (812)
T PRK11664 285 R-LVVDSGLERVARFDPKTGLTRLVTQRISQASMTQRAGRAGRL 327 (812)
T ss_pred e-EEEECCCcccccccccCCcceeEEEeechhhhhhhccccCCC
Confidence 9 999999997543 688888776653
No 89
>TIGR03714 secA2 accessory Sec system translocase SecA2. Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii.
Probab=99.42 E-value=1.4e-12 Score=116.22 Aligned_cols=121 Identities=12% Similarity=0.045 Sum_probs=100.2
Q ss_pred CCCCCCeEEE-----EEEccChHHHHHHHHHhh-cCCCcEEEEeccHHHHHHHHHHHHhCCCeeEEecCCCCHHHHHHHH
Q psy437 4 SFNRANLKYE-----ILPKKNVLKEVISLIKAK-YSGQSGIVYCLTRKECDSVAAALAQERINAISYHAGLADKLRNEVQ 77 (184)
Q Consensus 4 s~~R~Nl~y~-----v~~~~~k~~~L~~~l~~~-~~~~~~IIf~~tr~~~e~la~~L~~~gi~~~~~hg~l~~~~R~~~~ 77 (184)
|.+||.+.-. ......|...+.+.+.+. ..+.|+||||+|++.++.++..|.+.|+++.++||++++++|..+.
T Consensus 388 Pt~kp~~r~d~~d~i~~~~~~K~~ai~~~i~~~~~~~~pvLIft~s~~~se~ls~~L~~~gi~~~~L~a~~~~~E~~ii~ 467 (762)
T TIGR03714 388 PTNKPIIRIDYPDKIYATLPEKLMATLEDVKEYHETGQPVLLITGSVEMSEIYSELLLREGIPHNLLNAQNAAKEAQIIA 467 (762)
T ss_pred CCCCCeeeeeCCCeEEECHHHHHHHHHHHHHHHhhCCCCEEEEECcHHHHHHHHHHHHHCCCCEEEecCCChHHHHHHHH
Confidence 5677776543 222335888888888653 3678999999999999999999999999999999999999988887
Q ss_pred HHHhccCceEEEEEeecccHHHHHHHHHhc---------CCcEEEeeCCCChHHHHHHHHHhhCCC
Q psy437 78 MKWISNKVHVGHWTVVSKECDSVAAALAQE---------RINAISYHAGLADKLRNEVQMKWISNK 134 (184)
Q Consensus 78 ~~f~~g~~~vlVaT~tr~~~e~~a~gL~~~---------gi~~~vih~~~p~~~r~~~~~~f~~~~ 134 (184)
.++..| .|+|||+ .++||+|++ |+. +|+++++|....+ +|+.+|+|.
T Consensus 468 ~ag~~g--~VlIATd------mAgRGtDI~l~~~v~~~GGL~-vIit~~~ps~rid-~qr~GRtGR 523 (762)
T TIGR03714 468 EAGQKG--AVTVATS------MAGRGTDIKLGKGVAELGGLA-VIGTERMENSRVD-LQLRGRSGR 523 (762)
T ss_pred HcCCCC--eEEEEcc------ccccccCCCCCccccccCCeE-EEEecCCCCcHHH-HHhhhcccC
Confidence 777666 6899999 889999999 898 9999999987655 999977654
No 90
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=99.42 E-value=7.7e-12 Score=111.09 Aligned_cols=140 Identities=16% Similarity=0.130 Sum_probs=111.9
Q ss_pred CCCcEEEEeccHHHHHHHHHHHHh----CCCeeEEecCCCCHHHHHHHHHHHhccCceEEEEEeec--------------
Q psy437 33 SGQSGIVYCLTRKECDSVAAALAQ----ERINAISYHAGLADKLRNEVQMKWISNKVHVGHWTVVS-------------- 94 (184)
Q Consensus 33 ~~~~~IIf~~tr~~~e~la~~L~~----~gi~~~~~hg~l~~~~R~~~~~~f~~g~~~vlVaT~tr-------------- 94 (184)
.+.++++-+||+..|+++++.+.+ .|+++..++|+++..+|...++...+|+.+|+|+|.++
T Consensus 283 ~g~qvlilaPT~~LA~Q~~~~~~~l~~~~gi~v~lltg~~~~~~r~~~~~~i~~g~~~IiVgT~~ll~~~~~~~~l~lvV 362 (630)
T TIGR00643 283 AGYQVALMAPTEILAEQHYNSLRNLLAPLGIEVALLTGSLKGKRRKELLETIASGQIHLVVGTHALIQEKVEFKRLALVI 362 (630)
T ss_pred cCCcEEEECCHHHHHHHHHHHHHHHhcccCcEEEEEecCCCHHHHHHHHHHHhCCCCCEEEecHHHHhccccccccceEE
Confidence 567899999999999999888765 37999999999999888888777777766666666544
Q ss_pred --------------------------------------------------------------------------------
Q psy437 95 -------------------------------------------------------------------------------- 94 (184)
Q Consensus 95 -------------------------------------------------------------------------------- 94 (184)
T Consensus 363 IDEaH~fg~~qr~~l~~~~~~~~~~~~l~~SATp~prtl~l~~~~~l~~~~i~~~p~~r~~i~~~~~~~~~~~~~~~~i~ 442 (630)
T TIGR00643 363 IDEQHRFGVEQRKKLREKGQGGFTPHVLVMSATPIPRTLALTVYGDLDTSIIDELPPGRKPITTVLIKHDEKDIVYEFIE 442 (630)
T ss_pred EechhhccHHHHHHHHHhcccCCCCCEEEEeCCCCcHHHHHHhcCCcceeeeccCCCCCCceEEEEeCcchHHHHHHHHH
Confidence
Q ss_pred ------------------------ccHHHHHHHHHh--cCCcEEEeeCCCChHHHHHHHHHhhCCCceEEEE-------E
Q psy437 95 ------------------------KECDSVAAALAQ--ERINAISYHAGLADKLRNEVQMKWISNKVHLYNV-------W 141 (184)
Q Consensus 95 ------------------------~~~e~~a~gL~~--~gi~~~vih~~~p~~~r~~~~~~f~~~~~~v~va-------~ 141 (184)
..++.++..|.. +++++.++|++|++..|..+.+.|++|+..|+|+ +
T Consensus 443 ~~l~~g~q~~v~~~~i~~s~~~~~~~a~~~~~~L~~~~~~~~v~~lHG~m~~~eR~~i~~~F~~g~~~ILVaT~vie~Gv 522 (630)
T TIGR00643 443 EEIAKGRQAYVVYPLIEESEKLDLKAAEALYERLKKAFPKYNVGLLHGRMKSDEKEAVMEEFREGEVDILVATTVIEVGV 522 (630)
T ss_pred HHHHhCCcEEEEEccccccccchHHHHHHHHHHHHhhCCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEECceeecCc
Confidence 012334444532 5778899999999999999999999999999999 6
Q ss_pred ecCCccEEEecCCCCCccc-cccccccccCCccc
Q psy437 142 KIQWKRIIWIHSLVLIKPD-YLPPILDLRLGRED 174 (184)
Q Consensus 142 D~~~vr~v~~~~~p~~~e~-y~~~i~~~~~~r~~ 174 (184)
|+|+++.|++++.|....+ |.|++ +|+||.+
T Consensus 523 DiP~v~~VIi~~~~r~gls~lhQ~~--GRvGR~g 554 (630)
T TIGR00643 523 DVPNATVMVIEDAERFGLSQLHQLR--GRVGRGD 554 (630)
T ss_pred ccCCCcEEEEeCCCcCCHHHHHHHh--hhcccCC
Confidence 9999999999999985444 45576 6888853
No 91
>KOG0346|consensus
Probab=99.41 E-value=7.4e-13 Score=109.85 Aligned_cols=84 Identities=13% Similarity=0.087 Sum_probs=74.2
Q ss_pred EEEEEEccChHHHHHHHHHhhcCCCcEEEEeccHHHHHHHHHHHHhCCCeeEEecCCCCHHHHHHHHHHHhccCceEEEE
Q psy437 11 KYEILPKKNVLKEVISLIKAKYSGQSGIVYCLTRKECDSVAAALAQERINAISYHAGLADKLRNEVQMKWISNKVHVGHW 90 (184)
Q Consensus 11 ~y~v~~~~~k~~~L~~~l~~~~~~~~~IIf~~tr~~~e~la~~L~~~gi~~~~~hg~l~~~~R~~~~~~f~~g~~~vlVa 90 (184)
++..+...+|+-.+..+++-..-.++.|||+||...|-.+.-.|...|+++..+.|.|+...|.-++++|-.|-.++|||
T Consensus 245 y~v~cse~DKflllyallKL~LI~gKsliFVNtIdr~YrLkLfLeqFGiksciLNseLP~NSR~Hii~QFNkG~YdivIA 324 (569)
T KOG0346|consen 245 YQVKCSEEDKFLLLYALLKLRLIRGKSLIFVNTIDRCYRLKLFLEQFGIKSCILNSELPANSRCHIIEQFNKGLYDIVIA 324 (569)
T ss_pred EEEEeccchhHHHHHHHHHHHHhcCceEEEEechhhhHHHHHHHHHhCcHhhhhcccccccchhhHHHHhhCcceeEEEE
Confidence 44455666798888888765456789999999999999999999999999999999999999999999999999999999
Q ss_pred Eeec
Q psy437 91 TVVS 94 (184)
Q Consensus 91 T~tr 94 (184)
|+.-
T Consensus 325 tD~s 328 (569)
T KOG0346|consen 325 TDDS 328 (569)
T ss_pred ccCc
Confidence 9933
No 92
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=99.41 E-value=2e-12 Score=117.17 Aligned_cols=96 Identities=17% Similarity=0.086 Sum_probs=86.5
Q ss_pred CCCcEEEEeccHHHHHHHHHHHHh---CCCeeEEecCCCCHHHHHHHHHHHhccCceEEEEEeecccHHHHHHHHHhcCC
Q psy437 33 SGQSGIVYCLTRKECDSVAAALAQ---ERINAISYHAGLADKLRNEVQMKWISNKVHVGHWTVVSKECDSVAAALAQERI 109 (184)
Q Consensus 33 ~~~~~IIf~~tr~~~e~la~~L~~---~gi~~~~~hg~l~~~~R~~~~~~f~~g~~~vlVaT~tr~~~e~~a~gL~~~gi 109 (184)
..+++|||++++.+++.+++.|.+ .++.+..+||+|++++|.++++.|.+|+.+|||||+ .+++||+++||
T Consensus 208 ~~g~iLVFlpg~~eI~~l~~~L~~~~~~~~~v~pLHg~L~~~eq~~~~~~~~~G~rkVlVATn------IAErgItIp~V 281 (819)
T TIGR01970 208 ETGSILVFLPGQAEIRRVQEQLAERLDSDVLICPLYGELSLAAQDRAIKPDPQGRRKVVLATN------IAETSLTIEGI 281 (819)
T ss_pred cCCcEEEEECCHHHHHHHHHHHHhhcCCCcEEEEecCCCCHHHHHHHHhhcccCCeEEEEecc------hHhhcccccCc
Confidence 457899999999999999999987 478999999999999999999999999999999999 99999999999
Q ss_pred cEEEeeCCCChHH------------------HHHHHHHhhCCCc
Q psy437 110 NAISYHAGLADKL------------------RNEVQMKWISNKV 135 (184)
Q Consensus 110 ~~~vih~~~p~~~------------------r~~~~~~f~~~~~ 135 (184)
+ +||++|+|... .++.||..+.|..
T Consensus 282 ~-~VID~Gl~r~~~yd~~~g~~~L~~~~iSkasa~QR~GRAGR~ 324 (819)
T TIGR01970 282 R-VVIDSGLARVARFDPKTGITRLETVRISQASATQRAGRAGRL 324 (819)
T ss_pred e-EEEEcCcccccccccccCCceeeEEEECHHHHHhhhhhcCCC
Confidence 9 99999999753 2478888777653
No 93
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=99.40 E-value=1.3e-12 Score=122.01 Aligned_cols=92 Identities=18% Similarity=0.319 Sum_probs=79.1
Q ss_pred hHHHHHHHHHhhcCCCcEEEEeccH---HHHHHHHHHHHhCCCeeEEecCCCCHHHHHHHHHHHhccCceEEEEEeeccc
Q psy437 20 VLKEVISLIKAKYSGQSGIVYCLTR---KECDSVAAALAQERINAISYHAGLADKLRNEVQMKWISNKVHVGHWTVVSKE 96 (184)
Q Consensus 20 k~~~L~~~l~~~~~~~~~IIf~~tr---~~~e~la~~L~~~gi~~~~~hg~l~~~~R~~~~~~f~~g~~~vlVaT~tr~~ 96 (184)
+...|.++++. .+.++||||+|+ +.|+.+++.|.+.|+++..+||+|++ .++++|++|+++|||||.+.-
T Consensus 314 ~~~~L~~ll~~--l~~~~IVFv~t~~~~~~a~~l~~~L~~~g~~a~~lhg~~~~----~~l~~Fr~G~~~vLVata~~t- 386 (1171)
T TIGR01054 314 LKETLLEIVKK--LGTGGIVYVSIDYGKEKAEEIAEFLENHGVKAVAYHATKPK----EDYEKFAEGEIDVLIGVASYY- 386 (1171)
T ss_pred HHHHHHHHHHH--cCCCEEEEEeccccHHHHHHHHHHHHhCCceEEEEeCCCCH----HHHHHHHcCCCCEEEEecccc-
Confidence 35667777765 356899999999 99999999999999999999999973 689999999999999973221
Q ss_pred HHHHHHHHHhcC-CcEEEeeCCCCh
Q psy437 97 CDSVAAALAQER-INAISYHAGLAD 120 (184)
Q Consensus 97 ~e~~a~gL~~~g-i~~~vih~~~p~ 120 (184)
+.+|||||.++ |+ +|||+|+|.
T Consensus 387 -dv~aRGIDip~~V~-~vI~~~~P~ 409 (1171)
T TIGR01054 387 -GTLVRGLDLPERVR-YAVFLGVPK 409 (1171)
T ss_pred -CcccccCCCCcccc-EEEEECCCC
Confidence 18899999999 88 999999997
No 94
>PRK10689 transcription-repair coupling factor; Provisional
Probab=99.39 E-value=3.4e-12 Score=119.08 Aligned_cols=135 Identities=12% Similarity=0.030 Sum_probs=115.6
Q ss_pred CCCcEEEEeccHHHHHHHHHHHHhC----CCeeEEecCCCCHHHHHHHHHHHhccCceEEEEEeec--------------
Q psy437 33 SGQSGIVYCLTRKECDSVAAALAQE----RINAISYHAGLADKLRNEVQMKWISNKVHVGHWTVVS-------------- 94 (184)
Q Consensus 33 ~~~~~IIf~~tr~~~e~la~~L~~~----gi~~~~~hg~l~~~~R~~~~~~f~~g~~~vlVaT~tr-------------- 94 (184)
.+.+++|.|||+..|.++++.+.+. ++++..++|+.+..++..+++...+|..+|||+|+..
T Consensus 648 ~g~qvlvLvPT~eLA~Q~~~~f~~~~~~~~v~i~~l~g~~s~~e~~~il~~l~~g~~dIVVgTp~lL~~~v~~~~L~lLV 727 (1147)
T PRK10689 648 NHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMLSRFRSAKEQTQILAEAAEGKIDILIGTHKLLQSDVKWKDLGLLI 727 (1147)
T ss_pred cCCeEEEEeCcHHHHHHHHHHHHHhhccCCceEEEEECCCCHHHHHHHHHHHHhCCCCEEEECHHHHhCCCCHhhCCEEE
Confidence 5678999999999999999988752 5678889999999999999999988999999999743
Q ss_pred --------------------------------------------------------------------------------
Q psy437 95 -------------------------------------------------------------------------------- 94 (184)
Q Consensus 95 -------------------------------------------------------------------------------- 94 (184)
T Consensus 728 IDEahrfG~~~~e~lk~l~~~~qvLl~SATpiprtl~l~~~gl~d~~~I~~~p~~r~~v~~~~~~~~~~~~k~~il~el~ 807 (1147)
T PRK10689 728 VDEEHRFGVRHKERIKAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDSLVVREAILREIL 807 (1147)
T ss_pred EechhhcchhHHHHHHhcCCCCcEEEEcCCCCHHHHHHHHhhCCCcEEEecCCCCCCCceEEEEecCcHHHHHHHHHHHh
Confidence
Q ss_pred ------------ccHHHHHHHHHhc--CCcEEEeeCCCChHHHHHHHHHhhCCCceEEEE-------EecCCccEEE---
Q psy437 95 ------------KECDSVAAALAQE--RINAISYHAGLADKLRNEVQMKWISNKVHLYNV-------WKIQWKRIIW--- 150 (184)
Q Consensus 95 ------------~~~e~~a~gL~~~--gi~~~vih~~~p~~~r~~~~~~f~~~~~~v~va-------~D~~~vr~v~--- 150 (184)
..++.++..|... ++++.++|++|++..|..+...|++|++.|+|| +|+|++++|+
T Consensus 808 r~gqv~vf~n~i~~ie~la~~L~~~~p~~~v~~lHG~m~q~eRe~im~~Fr~Gk~~VLVaTdIierGIDIP~v~~VIi~~ 887 (1147)
T PRK10689 808 RGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIER 887 (1147)
T ss_pred cCCeEEEEECCHHHHHHHHHHHHHhCCCCcEEEEeCCCCHHHHHHHHHHHHhcCCCEEEECchhhcccccccCCEEEEec
Confidence 2466778888654 788899999999999999999999999999999 6999999999
Q ss_pred --ecCCCCCccccccccccccCCcc
Q psy437 151 --IHSLVLIKPDYLPPILDLRLGRE 173 (184)
Q Consensus 151 --~~~~p~~~e~y~~~i~~~~~~r~ 173 (184)
||++| +|+|++ +|+||.
T Consensus 888 ad~fgla----q~~Qr~--GRvGR~ 906 (1147)
T PRK10689 888 ADHFGLA----QLHQLR--GRVGRS 906 (1147)
T ss_pred CCCCCHH----HHHHHh--hccCCC
Confidence 66664 599998 477774
No 95
>PRK13767 ATP-dependent helicase; Provisional
Probab=99.39 E-value=7.5e-12 Score=114.71 Aligned_cols=148 Identities=16% Similarity=0.091 Sum_probs=107.3
Q ss_pred HHHHHHhhc-CCCcEEEEeccHHHHHHHHHHHHhC-----CCeeEEecCC---------------C---C----HHHHHH
Q psy437 24 VISLIKAKY-SGQSGIVYCLTRKECDSVAAALAQE-----RINAISYHAG---------------L---A----DKLRNE 75 (184)
Q Consensus 24 L~~~l~~~~-~~~~~IIf~~tr~~~e~la~~L~~~-----gi~~~~~hg~---------------l---~----~~~R~~ 75 (184)
++..|.... ...+.|.+..|-...+.++++|... .-++....+. + + ......
T Consensus 196 ~L~rL~~l~~~~~q~IglSATl~~~~~va~~L~~~~~~~~~r~~~iv~~~~~k~~~i~v~~p~~~l~~~~~~~~~~~l~~ 275 (876)
T PRK13767 196 SLERLEELAGGEFVRIGLSATIEPLEEVAKFLVGYEDDGEPRDCEIVDARFVKPFDIKVISPVDDLIHTPAEEISEALYE 275 (876)
T ss_pred HHHHHHHhcCCCCeEEEEecccCCHHHHHHHhcCccccCCCCceEEEccCCCccceEEEeccCccccccccchhHHHHHH
Confidence 334444332 3345677888887778888888532 1111111111 0 0 011122
Q ss_pred HHHHHhccCceEEEEEeecccHHHHHHHHHh------cCCcEEEeeCCCChHHHHHHHHHhhCCCceEEEE-------Ee
Q psy437 76 VQMKWISNKVHVGHWTVVSKECDSVAAALAQ------ERINAISYHAGLADKLRNEVQMKWISNKVHLYNV-------WK 142 (184)
Q Consensus 76 ~~~~f~~g~~~vlVaT~tr~~~e~~a~gL~~------~gi~~~vih~~~p~~~r~~~~~~f~~~~~~v~va-------~D 142 (184)
.+........++||+|+++..|+.++..|.. .+..+.++|+++++..|..+.+.|++|++.++|| +|
T Consensus 276 ~L~~~i~~~~~~LVF~nTr~~ae~la~~L~~~~~~~~~~~~i~~hHg~ls~~~R~~ve~~fk~G~i~vLVaTs~Le~GID 355 (876)
T PRK13767 276 TLHELIKEHRTTLIFTNTRSGAERVLYNLRKRFPEEYDEDNIGAHHSSLSREVRLEVEEKLKRGELKVVVSSTSLELGID 355 (876)
T ss_pred HHHHHHhcCCCEEEEeCCHHHHHHHHHHHHHhchhhccccceeeeeCCCCHHHHHHHHHHHHcCCCeEEEECChHHhcCC
Confidence 3333334445799999999999999999965 2456789999999999999999999999999999 69
Q ss_pred cCCccEEEecCCCCCccccccccccccCCcc
Q psy437 143 IQWKRIIWIHSLVLIKPDYLPPILDLRLGRE 173 (184)
Q Consensus 143 ~~~vr~v~~~~~p~~~e~y~~~i~~~~~~r~ 173 (184)
+|++++||+++.|.+..+|+|++ +|+||.
T Consensus 356 ip~Vd~VI~~~~P~sv~~ylQRi--GRaGR~ 384 (876)
T PRK13767 356 IGYIDLVVLLGSPKSVSRLLQRI--GRAGHR 384 (876)
T ss_pred CCCCcEEEEeCCCCCHHHHHHhc--ccCCCC
Confidence 99999999999999999999999 588875
No 96
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=99.39 E-value=5.3e-12 Score=115.60 Aligned_cols=95 Identities=12% Similarity=0.082 Sum_probs=84.6
Q ss_pred CCCcEEEEeccHHHHHHHHHHHHhC--CCeeEEecCCCCHHHHHHHHHHHhccCceEEEEEeecccHHHHHHHHHhcCCc
Q psy437 33 SGQSGIVYCLTRKECDSVAAALAQE--RINAISYHAGLADKLRNEVQMKWISNKVHVGHWTVVSKECDSVAAALAQERIN 110 (184)
Q Consensus 33 ~~~~~IIf~~tr~~~e~la~~L~~~--gi~~~~~hg~l~~~~R~~~~~~f~~g~~~vlVaT~tr~~~e~~a~gL~~~gi~ 110 (184)
.+++++|||++.+.++.+++.|.+. ++++..+||+|++++|..++++|++|+.+|||||+ .+++|+|.++++
T Consensus 659 ~g~qv~if~n~i~~~e~l~~~L~~~~p~~~v~~lHG~m~~~eRe~im~~F~~Gk~~ILVaT~------iie~GIDIp~v~ 732 (926)
T TIGR00580 659 RGGQVFYVHNRIESIEKLATQLRELVPEARIAIAHGQMTENELEEVMLEFYKGEFQVLVCTT------IIETGIDIPNAN 732 (926)
T ss_pred cCCeEEEEECCcHHHHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHHHHHcCCCCEEEECC------hhhcccccccCC
Confidence 5678999999999999999999974 78999999999999999999999999999999999 999999999999
Q ss_pred EEEeeCCCCh-HHHHHHHHHhhCCC
Q psy437 111 AISYHAGLAD-KLRNEVQMKWISNK 134 (184)
Q Consensus 111 ~~vih~~~p~-~~r~~~~~~f~~~~ 134 (184)
+|++++.|. ..-+++|+.+|.|.
T Consensus 733 -~VIi~~a~~~gls~l~Qr~GRvGR 756 (926)
T TIGR00580 733 -TIIIERADKFGLAQLYQLRGRVGR 756 (926)
T ss_pred -EEEEecCCCCCHHHHHHHhcCCCC
Confidence 777766654 45578899877554
No 97
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=99.39 E-value=2.6e-12 Score=114.02 Aligned_cols=122 Identities=16% Similarity=0.088 Sum_probs=101.6
Q ss_pred CCCCCCeEEEEE-----EccChHHHHHHHHHhh-cCCCcEEEEeccHHHHHHHHHHHHhCCCeeEEecCCCCHHHHHHHH
Q psy437 4 SFNRANLKYEIL-----PKKNVLKEVISLIKAK-YSGQSGIVYCLTRKECDSVAAALAQERINAISYHAGLADKLRNEVQ 77 (184)
Q Consensus 4 s~~R~Nl~y~v~-----~~~~k~~~L~~~l~~~-~~~~~~IIf~~tr~~~e~la~~L~~~gi~~~~~hg~l~~~~R~~~~ 77 (184)
|.+||++..... ...+|...+.+.+.+. ..+.|+||||+|...++.++..|.+.|+++..+||+ +.+|+..+
T Consensus 369 Ptnkp~~R~d~~d~i~~t~~~k~~ai~~~i~~~~~~grpvLV~t~si~~se~ls~~L~~~gi~~~~Lna~--q~~rEa~i 446 (745)
T TIGR00963 369 PTNRPVIRKDLSDLVYKTEEEKWKAVVDEIKERHAKGQPVLVGTTSVEKSELLSNLLKERGIPHNVLNAK--NHEREAEI 446 (745)
T ss_pred CCCCCeeeeeCCCeEEcCHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHcCCCeEEeeCC--hHHHHHHH
Confidence 567777654321 1224777777766432 367899999999999999999999999999999998 88999999
Q ss_pred HHHhccCceEEEEEeecccHHHHHHHHHhcC-------CcEEEeeCCCChHHHHHHHHHhhCCC
Q psy437 78 MKWISNKVHVGHWTVVSKECDSVAAALAQER-------INAISYHAGLADKLRNEVQMKWISNK 134 (184)
Q Consensus 78 ~~f~~g~~~vlVaT~tr~~~e~~a~gL~~~g-------i~~~vih~~~p~~~r~~~~~~f~~~~ 134 (184)
..|..+...|+|||+ .++||+|++. .- +|||+++|.+.|.|.|+.+++|.
T Consensus 447 i~~ag~~g~VtIATn------mAgRGtDI~l~~V~~~GGl-~VI~t~~p~s~ri~~q~~GRtGR 503 (745)
T TIGR00963 447 IAQAGRKGAVTIATN------MAGRGTDIKLEEVKELGGL-YVIGTERHESRRIDNQLRGRSGR 503 (745)
T ss_pred HHhcCCCceEEEEec------cccCCcCCCccchhhcCCc-EEEecCCCCcHHHHHHHhccccC
Confidence 999999999999999 8899998876 44 99999999999999999977653
No 98
>PRK02362 ski2-like helicase; Provisional
Probab=99.38 E-value=3e-12 Score=115.61 Aligned_cols=95 Identities=20% Similarity=0.165 Sum_probs=83.4
Q ss_pred CCCcEEEEeccHHHHHHHHHHHHhCC------------------------------------CeeEEecCCCCHHHHHHH
Q psy437 33 SGQSGIVYCLTRKECDSVAAALAQER------------------------------------INAISYHAGLADKLRNEV 76 (184)
Q Consensus 33 ~~~~~IIf~~tr~~~e~la~~L~~~g------------------------------------i~~~~~hg~l~~~~R~~~ 76 (184)
.+.++||||+|++.|+.++..|.... ..++++||||++.+|..+
T Consensus 242 ~~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~l~~gva~hHagl~~~eR~~v 321 (737)
T PRK02362 242 EGGQCLVFVSSRRNAEGFAKRAASALKKTLTAAERAELAELAEEIREVSDTETSKDLADCVAKGAAFHHAGLSREHRELV 321 (737)
T ss_pred cCCCeEEEEeCHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhccCccccHHHHHHHHhCEEeecCCCCHHHHHHH
Confidence 46799999999999999998886421 357889999999999999
Q ss_pred HHHHhccCceEEEEEeecccHHHHHHHHHhcCCcEEEee----CC-----CChHHHHHHHHHhhCCC
Q psy437 77 QMKWISNKVHVGHWTVVSKECDSVAAALAQERINAISYH----AG-----LADKLRNEVQMKWISNK 134 (184)
Q Consensus 77 ~~~f~~g~~~vlVaT~tr~~~e~~a~gL~~~gi~~~vih----~~-----~p~~~r~~~~~~f~~~~ 134 (184)
++.|++|.++|||||+ .+|+|++.+..+ +||+ |+ .|-+..+|.|+.++.|.
T Consensus 322 e~~Fr~G~i~VLvaT~------tla~GvnlPa~~-VVI~~~~~yd~~~g~~~~s~~~y~Qm~GRAGR 381 (737)
T PRK02362 322 EDAFRDRLIKVISSTP------TLAAGLNLPARR-VIIRDYRRYDGGAGMQPIPVLEYHQMAGRAGR 381 (737)
T ss_pred HHHHHcCCCeEEEech------hhhhhcCCCceE-EEEecceeecCCCCceeCCHHHHHHHhhcCCC
Confidence 9999999999999999 889999999998 7776 32 68899999999988875
No 99
>PHA02653 RNA helicase NPH-II; Provisional
Probab=99.37 E-value=2.8e-12 Score=113.90 Aligned_cols=92 Identities=17% Similarity=0.224 Sum_probs=79.2
Q ss_pred CCcEEEEeccHHHHHHHHHHHHhC--CCeeEEecCCCCHHHHHHHHHHH-hccCceEEEEEeecccHHHHHHHHHhcCCc
Q psy437 34 GQSGIVYCLTRKECDSVAAALAQE--RINAISYHAGLADKLRNEVQMKW-ISNKVHVGHWTVVSKECDSVAAALAQERIN 110 (184)
Q Consensus 34 ~~~~IIf~~tr~~~e~la~~L~~~--gi~~~~~hg~l~~~~R~~~~~~f-~~g~~~vlVaT~tr~~~e~~a~gL~~~gi~ 110 (184)
++++||||+++..++.+++.|.+. ++.+..+||+|++. ++.+++| ++|+.+|||||+ .+++||+++||+
T Consensus 395 ~g~iLVFlpg~~ei~~l~~~L~~~~~~~~v~~LHG~Lsq~--eq~l~~ff~~gk~kILVATd------IAERGIDIp~V~ 466 (675)
T PHA02653 395 GSSGIVFVASVSQCEEYKKYLEKRLPIYDFYIIHGKVPNI--DEILEKVYSSKNPSIIISTP------YLESSVTIRNAT 466 (675)
T ss_pred CCcEEEEECcHHHHHHHHHHHHhhcCCceEEeccCCcCHH--HHHHHHHhccCceeEEeccC------hhhccccccCee
Confidence 468999999999999999999986 79999999999974 5677787 689999999999 999999999998
Q ss_pred EEEeeCC---CCh---------HHHHHHHHHhhCCC
Q psy437 111 AISYHAG---LAD---------KLRNEVQMKWISNK 134 (184)
Q Consensus 111 ~~vih~~---~p~---------~~r~~~~~~f~~~~ 134 (184)
+||++| .|. +..+|+||.+|.|.
T Consensus 467 -~VID~G~~k~p~~~~g~~~~iSkasa~QRaGRAGR 501 (675)
T PHA02653 467 -HVYDTGRVYVPEPFGGKEMFISKSMRTQRKGRVGR 501 (675)
T ss_pred -EEEECCCccCCCcccCcccccCHHHHHHhccCcCC
Confidence 999999 565 55667777766554
No 100
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=99.36 E-value=6.4e-12 Score=105.96 Aligned_cols=107 Identities=15% Similarity=0.161 Sum_probs=93.2
Q ss_pred hHHHHHHHHHhhc---CCCcEEEEeccHHHHHHHHHHHHhCCCeeE-Ee--------cCCCCHHHHHHHHHHHhccCceE
Q psy437 20 VLKEVISLIKAKY---SGQSGIVYCLTRKECDSVAAALAQERINAI-SY--------HAGLADKLRNEVQMKWISNKVHV 87 (184)
Q Consensus 20 k~~~L~~~l~~~~---~~~~~IIf~~tr~~~e~la~~L~~~gi~~~-~~--------hg~l~~~~R~~~~~~f~~g~~~v 87 (184)
|++.+.+++++.+ ...+.|||++.|.+++.++..|.+.|+.+. .+ ..||+|.+..+++++|++|+.+|
T Consensus 349 Kl~~l~eilke~~~k~~~~RvIVFT~yRdTae~i~~~L~~~~~~~~~rFiGQa~r~~~~GMsQkeQ~eiI~~Fr~Ge~nV 428 (542)
T COG1111 349 KLEKLREILKEQLEKNGDSRVIVFTEYRDTAEEIVNFLKKIGIKARVRFIGQASREGDKGMSQKEQKEIIDQFRKGEYNV 428 (542)
T ss_pred cHHHHHHHHHHHHhcCCCceEEEEehhHhHHHHHHHHHHhcCCcceeEEeeccccccccccCHHHHHHHHHHHhcCCceE
Confidence 7777777776543 456799999999999999999999888774 22 24799999999999999999999
Q ss_pred EEEEeecccHHHHHHHHHhcCCcEEEeeCCCChHHHHHHHHHhhCC
Q psy437 88 GHWTVVSKECDSVAAALAQERINAISYHAGLADKLRNEVQMKWISN 133 (184)
Q Consensus 88 lVaT~tr~~~e~~a~gL~~~gi~~~vih~~~p~~~r~~~~~~f~~~ 133 (184)
||||+ ..-.|||++.++ .|+-|+.-++.-.++||.++.|
T Consensus 429 LVaTS------VgEEGLDIp~vD-lVifYEpvpSeIR~IQR~GRTG 467 (542)
T COG1111 429 LVATS------VGEEGLDIPEVD-LVIFYEPVPSEIRSIQRKGRTG 467 (542)
T ss_pred EEEcc------cccccCCCCccc-EEEEecCCcHHHHHHHhhCccc
Confidence 99999 667899999999 9999999999999999997654
No 101
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=99.35 E-value=9.8e-12 Score=111.27 Aligned_cols=121 Identities=12% Similarity=0.168 Sum_probs=91.1
Q ss_pred CCCCeEEEEEEccChHHHHHHHHHhh-cCCCcEEEEecc--------HHHHHHHHHHHHhC--CCeeEEecCCCCHHHHH
Q psy437 6 NRANLKYEILPKKNVLKEVISLIKAK-YSGQSGIVYCLT--------RKECDSVAAALAQE--RINAISYHAGLADKLRN 74 (184)
Q Consensus 6 ~R~Nl~y~v~~~~~k~~~L~~~l~~~-~~~~~~IIf~~t--------r~~~e~la~~L~~~--gi~~~~~hg~l~~~~R~ 74 (184)
.|+.+...+..... ...+.+.+.+. ..+.+++|||++ ...++.+++.|.+. ++++..+||+|++++|.
T Consensus 443 ~r~~i~~~~~~~~~-~~~~~~~i~~~~~~g~q~~v~~~~ie~s~~l~~~~~~~~~~~L~~~~~~~~v~~lHG~m~~~eR~ 521 (681)
T PRK10917 443 GRKPITTVVIPDSR-RDEVYERIREEIAKGRQAYVVCPLIEESEKLDLQSAEETYEELQEAFPELRVGLLHGRMKPAEKD 521 (681)
T ss_pred CCCCcEEEEeCccc-HHHHHHHHHHHHHcCCcEEEEEcccccccchhHHHHHHHHHHHHHHCCCCcEEEEeCCCCHHHHH
Confidence 35555544444432 33344444322 256789999985 44567778888765 57899999999999999
Q ss_pred HHHHHHhccCceEEEEEeecccHHHHHHHHHhcCCcEEEeeCCCChH-HHHHHHHHhhCCC
Q psy437 75 EVQMKWISNKVHVGHWTVVSKECDSVAAALAQERINAISYHAGLADK-LRNEVQMKWISNK 134 (184)
Q Consensus 75 ~~~~~f~~g~~~vlVaT~tr~~~e~~a~gL~~~gi~~~vih~~~p~~-~r~~~~~~f~~~~ 134 (184)
.++++|++|+.+|||||+ .+++|+|.++++ +|++++.|.. ...+.|+.+|.|.
T Consensus 522 ~i~~~F~~g~~~ILVaT~------vie~GiDip~v~-~VIi~~~~r~gls~lhQ~~GRvGR 575 (681)
T PRK10917 522 AVMAAFKAGEIDILVATT------VIEVGVDVPNAT-VMVIENAERFGLAQLHQLRGRVGR 575 (681)
T ss_pred HHHHHHHcCCCCEEEECc------ceeeCcccCCCc-EEEEeCCCCCCHHHHHHHhhcccC
Confidence 999999999999999999 889999999999 8999999874 5666666665443
No 102
>PRK13766 Hef nuclease; Provisional
Probab=99.35 E-value=7e-12 Score=113.74 Aligned_cols=109 Identities=16% Similarity=0.184 Sum_probs=97.3
Q ss_pred ChHHHHHHHHHhh---cCCCcEEEEeccHHHHHHHHHHHHhCCCeeEEecCC--------CCHHHHHHHHHHHhccCceE
Q psy437 19 NVLKEVISLIKAK---YSGQSGIVYCLTRKECDSVAAALAQERINAISYHAG--------LADKLRNEVQMKWISNKVHV 87 (184)
Q Consensus 19 ~k~~~L~~~l~~~---~~~~~~IIf~~tr~~~e~la~~L~~~gi~~~~~hg~--------l~~~~R~~~~~~f~~g~~~v 87 (184)
.|.+.|.++|.+. ....++||||+++..|+.+.+.|...|+++..+||. |++.+|..++++|++|+.++
T Consensus 347 pK~~~L~~il~~~~~~~~~~kvlIF~~~~~t~~~L~~~L~~~~~~~~~~~g~~~~~~~~~~~~~~r~~~~~~F~~g~~~v 426 (773)
T PRK13766 347 PKLEKLREIVKEQLGKNPDSRIIVFTQYRDTAEKIVDLLEKEGIKAVRFVGQASKDGDKGMSQKEQIEILDKFRAGEFNV 426 (773)
T ss_pred hHHHHHHHHHHHHHhcCCCCeEEEEeCcHHHHHHHHHHHHhCCCceEEEEccccccccCCCCHHHHHHHHHHHHcCCCCE
Confidence 4777888877553 256789999999999999999999999999999886 99999999999999999999
Q ss_pred EEEEeecccHHHHHHHHHhcCCcEEEeeCCCChHHHHHHHHHhhCCC
Q psy437 88 GHWTVVSKECDSVAAALAQERINAISYHAGLADKLRNEVQMKWISNK 134 (184)
Q Consensus 88 lVaT~tr~~~e~~a~gL~~~gi~~~vih~~~p~~~r~~~~~~f~~~~ 134 (184)
||+|+ .+++|+|.++++ +||+|+.|.+...|+||..+.|.
T Consensus 427 LvaT~------~~~eGldi~~~~-~VI~yd~~~s~~r~iQR~GR~gR 466 (773)
T PRK13766 427 LVSTS------VAEEGLDIPSVD-LVIFYEPVPSEIRSIQRKGRTGR 466 (773)
T ss_pred EEECC------hhhcCCCcccCC-EEEEeCCCCCHHHHHHHhcccCc
Confidence 99999 778899999999 99999999999999999866543
No 103
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=99.34 E-value=9.8e-12 Score=111.91 Aligned_cols=90 Identities=18% Similarity=0.127 Sum_probs=78.5
Q ss_pred CCCcEEEEeccHHHHHHHHHHHHhCCCeeEEecCCCCHHHHH-----HHHHHHhc----cC-------ceEEEEEeeccc
Q psy437 33 SGQSGIVYCLTRKECDSVAAALAQERINAISYHAGLADKLRN-----EVQMKWIS----NK-------VHVGHWTVVSKE 96 (184)
Q Consensus 33 ~~~~~IIf~~tr~~~e~la~~L~~~gi~~~~~hg~l~~~~R~-----~~~~~f~~----g~-------~~vlVaT~tr~~ 96 (184)
.+.++||||||++.|+.+++.|.+.++ ..+||+|++.+|. .++++|++ |. ..|||||+
T Consensus 271 ~g~~vLVF~NTv~~Aq~L~~~L~~~g~--~lLHG~m~q~dR~~~~~~~il~~Fk~~~~~g~~~~~~~g~~ILVATd---- 344 (844)
T TIGR02621 271 SGGAILVFCRTVKHVRKVFAKLPKEKF--ELLTGTLRGAERDDLVKKEIFNRFLPQMLSGSRARPQQGTVYLVCTS---- 344 (844)
T ss_pred CCCcEEEEECCHHHHHHHHHHHHhcCC--eEeeCCCCHHHHhhHHHHHHHHHHhccccccccccccccceEEeccc----
Confidence 567899999999999999999998887 8899999999999 88999987 44 68999999
Q ss_pred HHHHHHHHHhcCCcEEEeeCCCChHHHHHHHHHhhCCC
Q psy437 97 CDSVAAALAQERINAISYHAGLADKLRNEVQMKWISNK 134 (184)
Q Consensus 97 ~e~~a~gL~~~gi~~~vih~~~p~~~r~~~~~~f~~~~ 134 (184)
.+++|||++. + .+|+...| ...|+||..+.|.
T Consensus 345 --VaerGLDId~-d-~VI~d~aP--~esyIQRiGRtgR 376 (844)
T TIGR02621 345 --AGEVGVNISA-D-HLVCDLAP--FESMQQRFGRVNR 376 (844)
T ss_pred --hhhhcccCCc-c-eEEECCCC--HHHHHHHhcccCC
Confidence 9999999987 6 77787776 5899999966543
No 104
>KOG0334|consensus
Probab=99.32 E-value=1.7e-11 Score=110.43 Aligned_cols=137 Identities=15% Similarity=0.144 Sum_probs=120.7
Q ss_pred CCCcEEEEeccHHHHHHHHHHHHh----CCCeeEEecCCCCHHHHHHHHHHHhccCceEEEEEeec--------------
Q psy437 33 SGQSGIVYCLTRKECDSVAAALAQ----ERINAISYHAGLADKLRNEVQMKWISNKVHVGHWTVVS-------------- 94 (184)
Q Consensus 33 ~~~~~IIf~~tr~~~e~la~~L~~----~gi~~~~~hg~l~~~~R~~~~~~f~~g~~~vlVaT~tr-------------- 94 (184)
.++-+||.|+|++.+.+|.+++.. .++.+....|+-. +.+.+...+.| ..|+|||++|
T Consensus 437 dGPi~li~aPtrela~QI~r~~~kf~k~l~ir~v~vygg~~---~~~qiaelkRg-~eIvV~tpGRmiD~l~~n~grvtn 512 (997)
T KOG0334|consen 437 DGPIALILAPTRELAMQIHREVRKFLKLLGIRVVCVYGGSG---ISQQIAELKRG-AEIVVCTPGRMIDILCANSGRVTN 512 (997)
T ss_pred CCceEEEEcCCHHHHHHHHHHHHHHHhhcCceEEEecCCcc---HHHHHHHHhcC-CceEEeccchhhhhHhhcCCcccc
Confidence 445589999999999999888764 4888888888754 44566777777 7899999999
Q ss_pred --------------------------------------------------------------------------------
Q psy437 95 -------------------------------------------------------------------------------- 94 (184)
Q Consensus 95 -------------------------------------------------------------------------------- 94 (184)
T Consensus 513 lrR~t~lv~deaDrmfdmgfePq~~~Ii~nlrpdrQtvlfSatfpr~m~~la~~vl~~Pveiiv~~~svV~k~V~q~v~V 592 (997)
T KOG0334|consen 513 LRRVTYLVLDEADRMFDMGFEPQITRILQNLRPDRQTVLFSATFPRSMEALARKVLKKPVEIIVGGRSVVCKEVTQVVRV 592 (997)
T ss_pred ccccceeeechhhhhheeccCcccchHHhhcchhhhhhhhhhhhhHHHHHHHHHhhcCCeeEEEccceeEeccceEEEEE
Confidence
Q ss_pred -------------------------------ccHHHHHHHHHhcCCcEEEeeCCCChHHHHHHHHHhhCCCceEEEE---
Q psy437 95 -------------------------------KECDSVAAALAQERINAISYHAGLADKLRNEVQMKWISNKVHLYNV--- 140 (184)
Q Consensus 95 -------------------------------~~~e~~a~gL~~~gi~~~vih~~~p~~~r~~~~~~f~~~~~~v~va--- 140 (184)
..|+.+.+-|...|+.|..+|+|.|+..|+.+-+.|+++.+.+++|
T Consensus 593 ~~~e~eKf~kL~eLl~e~~e~~~tiiFv~~qe~~d~l~~~L~~ag~~~~slHGgv~q~dR~sti~dfK~~~~~LLvaTsv 672 (997)
T KOG0334|consen 593 CAIENEKFLKLLELLGERYEDGKTIIFVDKQEKADALLRDLQKAGYNCDSLHGGVDQHDRSSTIEDFKNGVVNLLVATSV 672 (997)
T ss_pred ecCchHHHHHHHHHHHHHhhcCCEEEEEcCchHHHHHHHHHHhcCcchhhhcCCCchHHHHhHHHHHhccCceEEEehhh
Confidence 5799999999999999988999999999999999999999999999
Q ss_pred ----EecCCccEEEecCCCCCcccccccccc-ccCCcc
Q psy437 141 ----WKIQWKRIIWIHSLVLIKPDYLPPILD-LRLGRE 173 (184)
Q Consensus 141 ----~D~~~vr~v~~~~~p~~~e~y~~~i~~-~~~~r~ 173 (184)
+|.+++-.|+|||.|.--++|+|+.++ +|+||-
T Consensus 673 varGLdv~~l~Lvvnyd~pnh~edyvhR~gRTgragrk 710 (997)
T KOG0334|consen 673 VARGLDVKELILVVNYDFPNHYEDYVHRVGRTGRAGRK 710 (997)
T ss_pred hhcccccccceEEEEcccchhHHHHHHHhcccccCCcc
Confidence 699999999999999999999999988 488885
No 105
>KOG0327|consensus
Probab=99.32 E-value=1.4e-11 Score=100.70 Aligned_cols=143 Identities=12% Similarity=0.150 Sum_probs=114.2
Q ss_pred CCcEEEEeccH-HHHHHHHHHHHhC--------------CCeeEEecCCCCHHHHHHHHHHHhccCceEEEEEeecccHH
Q psy437 34 GQSGIVYCLTR-KECDSVAAALAQE--------------RINAISYHAGLADKLRNEVQMKWISNKVHVGHWTVVSKECD 98 (184)
Q Consensus 34 ~~~~IIf~~tr-~~~e~la~~L~~~--------------gi~~~~~hg~l~~~~R~~~~~~f~~g~~~vlVaT~tr~~~e 98 (184)
..+.+.|.+|. ..+..+++.+-.. |++-.+.. ..++++...+-.|-....+.+++++++..+.
T Consensus 200 ~vQv~l~SAT~p~~vl~vt~~f~~~pv~i~vkk~~ltl~gikq~~i~--v~k~~k~~~l~dl~~~~~q~~if~nt~r~v~ 277 (397)
T KOG0327|consen 200 DVQVVLLSATMPSDVLEVTKKFMREPVRILVKKDELTLEGIKQFYIN--VEKEEKLDTLCDLYRRVTQAVIFCNTRRKVD 277 (397)
T ss_pred chhheeecccCcHHHHHHHHHhccCceEEEecchhhhhhheeeeeee--ccccccccHHHHHHHhhhcceEEecchhhHH
Confidence 45667777664 4666776665432 33332222 2233466667777666778999999999999
Q ss_pred HHHHHHHhcCCcEEEeeCCCChHHHHHHHHHhhCCCceEEEE-------EecCCccEEEecCCCCCcccccccccc-ccC
Q psy437 99 SVAAALAQERINAISYHAGLADKLRNEVQMKWISNKVHLYNV-------WKIQWKRIIWIHSLVLIKPDYLPPILD-LRL 170 (184)
Q Consensus 99 ~~a~gL~~~gi~~~vih~~~p~~~r~~~~~~f~~~~~~v~va-------~D~~~vr~v~~~~~p~~~e~y~~~i~~-~~~ 170 (184)
.+-..|...|..+..+|+++.+..|+-+.+.|++|..+|++. +|+.++..|+||++|...++|+|++++ +|.
T Consensus 278 ~l~~~L~~~~~~~s~~~~d~~q~~R~~~~~ef~~gssrvlIttdl~argidv~~~slvinydlP~~~~~yihR~gr~gr~ 357 (397)
T KOG0327|consen 278 NLTDKLRAHGFTVSAIHGDMEQNERDTLMREFRSGSSRVLITTDLLARGIDVQQVSLVVNYDLPARKENYIHRIGRAGRF 357 (397)
T ss_pred HHHHHHhhCCceEEEeecccchhhhhHHHHHhhcCCceEEeeccccccccchhhcceeeeeccccchhhhhhhccccccc
Confidence 999999999999999999999999999999999999999998 599999999999999999999999988 588
Q ss_pred Cccccccc
Q psy437 171 GREDIREG 178 (184)
Q Consensus 171 ~r~~~~~~ 178 (184)
||+++.-|
T Consensus 358 grkg~~in 365 (397)
T KOG0327|consen 358 GRKGVAIN 365 (397)
T ss_pred CCCceeee
Confidence 88865443
No 106
>PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins. It may be that this is not an autonomously folding unit, but an integral part of the helicase. The eukaryotic translation initiation factor 4A (eIF4A) is a member of the DEA(D/H)-box RNA helicase family This is a diverse group of proteins that couples an ATPase activity to RNA binding and unwinding. The structure of the carboxyl-terminal domain of eIF4A has been determined to 1.75 A resolution; it has a parallel alpha-beta topology that superimposes, with minor variations, on the structures and conserved motifs of the equivalent domain in other, distantly related helicases [].; GO: 0003676 nucleic acid binding, 0004386 helicase activity, 0005524 ATP binding; PDB: 2Z83_A 2JGN_C 2I4I_A 2BMF_A 2BHR_B 1WP9_E 2WAX_C 2WAY_C 3JUX_A 3DIN_B ....
Probab=99.31 E-value=2e-12 Score=84.29 Aligned_cols=75 Identities=15% Similarity=0.052 Sum_probs=63.7
Q ss_pred HHHHhCCCeeEEecCCCCHHHHHHHHHHHhccCceEEEEEeecccHHHHHHHHHhcCCcEEEeeCCCChHHHHHHHHHhh
Q psy437 52 AALAQERINAISYHAGLADKLRNEVQMKWISNKVHVGHWTVVSKECDSVAAALAQERINAISYHAGLADKLRNEVQMKWI 131 (184)
Q Consensus 52 ~~L~~~gi~~~~~hg~l~~~~R~~~~~~f~~g~~~vlVaT~tr~~~e~~a~gL~~~gi~~~vih~~~p~~~r~~~~~~f~ 131 (184)
+.|++.|+++..+||++++++|..+++.|.++...+||+|+ .++.|+|.++++ .|+++++|.+...|.|+..+
T Consensus 1 ~~L~~~~~~~~~i~~~~~~~~r~~~~~~f~~~~~~vli~t~------~~~~Gid~~~~~-~vi~~~~~~~~~~~~Q~~GR 73 (78)
T PF00271_consen 1 KFLEKKGIKVAIIHGDMSQKERQEILKKFNSGEIRVLIATD------ILGEGIDLPDAS-HVIFYDPPWSPEEYIQRIGR 73 (78)
T ss_dssp HHHHHTTSSEEEESTTSHHHHHHHHHHHHHTTSSSEEEESC------GGTTSSTSTTES-EEEESSSESSHHHHHHHHTT
T ss_pred CChHHCCCcEEEEECCCCHHHHHHHHHHhhccCceEEEeec------cccccccccccc-cccccccCCCHHHHHHHhhc
Confidence 46888999999999999999999999999999999999999 556677777777 77777777777777777766
Q ss_pred CC
Q psy437 132 SN 133 (184)
Q Consensus 132 ~~ 133 (184)
-+
T Consensus 74 ~~ 75 (78)
T PF00271_consen 74 AG 75 (78)
T ss_dssp SS
T ss_pred CC
Confidence 44
No 107
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=99.30 E-value=2.6e-11 Score=107.72 Aligned_cols=120 Identities=12% Similarity=0.126 Sum_probs=90.8
Q ss_pred CCCeEEEEEEccChHHHHHHHHHhh-cCCCcEEEEeccH--------HHHHHHHHHHHh--CCCeeEEecCCCCHHHHHH
Q psy437 7 RANLKYEILPKKNVLKEVISLIKAK-YSGQSGIVYCLTR--------KECDSVAAALAQ--ERINAISYHAGLADKLRNE 75 (184)
Q Consensus 7 R~Nl~y~v~~~~~k~~~L~~~l~~~-~~~~~~IIf~~tr--------~~~e~la~~L~~--~gi~~~~~hg~l~~~~R~~ 75 (184)
|..+...+.....+ ..+...+.+. ..+.+++|||++. ..++.+++.|.+ .++++..+||+|++++|..
T Consensus 421 r~~i~~~~~~~~~~-~~~~~~i~~~l~~g~q~~v~~~~i~~s~~~~~~~a~~~~~~L~~~~~~~~v~~lHG~m~~~eR~~ 499 (630)
T TIGR00643 421 RKPITTVLIKHDEK-DIVYEFIEEEIAKGRQAYVVYPLIEESEKLDLKAAEALYERLKKAFPKYNVGLLHGRMKSDEKEA 499 (630)
T ss_pred CCceEEEEeCcchH-HHHHHHHHHHHHhCCcEEEEEccccccccchHHHHHHHHHHHHhhCCCCcEEEEeCCCCHHHHHH
Confidence 44444444433332 4455555432 2567899999875 456677777775 3788999999999999999
Q ss_pred HHHHHhccCceEEEEEeecccHHHHHHHHHhcCCcEEEeeCCCCh-HHHHHHHHHhhCCC
Q psy437 76 VQMKWISNKVHVGHWTVVSKECDSVAAALAQERINAISYHAGLAD-KLRNEVQMKWISNK 134 (184)
Q Consensus 76 ~~~~f~~g~~~vlVaT~tr~~~e~~a~gL~~~gi~~~vih~~~p~-~~r~~~~~~f~~~~ 134 (184)
++++|++|+.+|||||+ .++.|+|.++++ +|++++.|. ....+.|+..+.|.
T Consensus 500 i~~~F~~g~~~ILVaT~------vie~GvDiP~v~-~VIi~~~~r~gls~lhQ~~GRvGR 552 (630)
T TIGR00643 500 VMEEFREGEVDILVATT------VIEVGVDVPNAT-VMVIEDAERFGLSQLHQLRGRVGR 552 (630)
T ss_pred HHHHHHcCCCCEEEECc------eeecCcccCCCc-EEEEeCCCcCCHHHHHHHhhhccc
Confidence 99999999999999999 789999999999 888999887 45666777766553
No 108
>PHA02558 uvsW UvsW helicase; Provisional
Probab=99.29 E-value=2.1e-11 Score=105.71 Aligned_cols=94 Identities=10% Similarity=-0.069 Sum_probs=86.3
Q ss_pred CCCcEEEEeccHHHHHHHHHHHHhCCCeeEEecCCCCHHHHHHHHHHHhccCceEEEEE-eecccHHHHHHHHHhcCCcE
Q psy437 33 SGQSGIVYCLTRKECDSVAAALAQERINAISYHAGLADKLRNEVQMKWISNKVHVGHWT-VVSKECDSVAAALAQERINA 111 (184)
Q Consensus 33 ~~~~~IIf~~tr~~~e~la~~L~~~gi~~~~~hg~l~~~~R~~~~~~f~~g~~~vlVaT-~tr~~~e~~a~gL~~~gi~~ 111 (184)
.+.+.+|||.+.+.++.+++.|.+.|+++..+||++++++|..+++.|.+|+..+|||| + .+++|+|.++++
T Consensus 343 ~~~~~lV~~~~~~h~~~L~~~L~~~g~~v~~i~G~~~~~eR~~i~~~~~~~~~~vLvaT~~------~l~eG~Dip~ld- 415 (501)
T PHA02558 343 KGENTFVMFKYVEHGKPLYEMLKKVYDKVYYVSGEVDTEDRNEMKKIAEGGKGIIIVASYG------VFSTGISIKNLH- 415 (501)
T ss_pred cCCCEEEEEEEHHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHHHhCCCCeEEEEEcc------eecccccccccc-
Confidence 45678898888999999999999999999999999999999999999999999999999 7 778999999999
Q ss_pred EEeeCCCChHHHHHHHHHhhCC
Q psy437 112 ISYHAGLADKLRNEVQMKWISN 133 (184)
Q Consensus 112 ~vih~~~p~~~r~~~~~~f~~~ 133 (184)
.++.+..+.+...|+|+.+|.+
T Consensus 416 ~vIl~~p~~s~~~~~QriGR~~ 437 (501)
T PHA02558 416 HVIFAHPSKSKIIVLQSIGRVL 437 (501)
T ss_pred EEEEecCCcchhhhhhhhhccc
Confidence 8889999999999999997654
No 109
>KOG0345|consensus
Probab=99.28 E-value=6.4e-11 Score=99.13 Aligned_cols=135 Identities=12% Similarity=0.064 Sum_probs=107.5
Q ss_pred cEEEEeccHHHHHHHHHHHHh-----CCCeeEEecCCCCHHHHHHHHHHHhccCceEEEEEeec----------------
Q psy437 36 SGIVYCLTRKECDSVAAALAQ-----ERINAISYHAGLADKLRNEVQMKWISNKVHVGHWTVVS---------------- 94 (184)
Q Consensus 36 ~~IIf~~tr~~~e~la~~L~~-----~gi~~~~~hg~l~~~~R~~~~~~f~~g~~~vlVaT~tr---------------- 94 (184)
-++|.+|||+.|.+|.+.+.. .++++..+-||.+-+ +-+..|++...+|+|+|++|
T Consensus 81 galIIsPTRELa~QI~~V~~~F~~~l~~l~~~l~vGG~~v~---~Di~~fkee~~nIlVgTPGRL~di~~~~~~~l~~rs 157 (567)
T KOG0345|consen 81 GALIISPTRELARQIREVAQPFLEHLPNLNCELLVGGRSVE---EDIKTFKEEGPNILVGTPGRLLDILQREAEKLSFRS 157 (567)
T ss_pred eEEEecCcHHHHHHHHHHHHHHHHhhhccceEEEecCccHH---HHHHHHHHhCCcEEEeCchhHHHHHhchhhhccccc
Confidence 479999999999988766542 477899999996543 45677888888999999999
Q ss_pred --------------------------------------------------------------------------------
Q psy437 95 -------------------------------------------------------------------------------- 94 (184)
Q Consensus 95 -------------------------------------------------------------------------------- 94 (184)
T Consensus 158 Le~LVLDEADrLldmgFe~~~n~ILs~LPKQRRTGLFSATq~~~v~dL~raGLRNpv~V~V~~k~~~~tPS~L~~~Y~v~ 237 (567)
T KOG0345|consen 158 LEILVLDEADRLLDMGFEASVNTILSFLPKQRRTGLFSATQTQEVEDLARAGLRNPVRVSVKEKSKSATPSSLALEYLVC 237 (567)
T ss_pred cceEEecchHhHhcccHHHHHHHHHHhcccccccccccchhhHHHHHHHHhhccCceeeeecccccccCchhhcceeeEe
Confidence
Q ss_pred ----------------------------ccHHHHHHHHH--hcCCcEEEeeCCCChHHHHHHHHHhhCCCceEEEE----
Q psy437 95 ----------------------------KECDSVAAALA--QERINAISYHAGLADKLRNEVQMKWISNKVHLYNV---- 140 (184)
Q Consensus 95 ----------------------------~~~e~~a~gL~--~~gi~~~vih~~~p~~~r~~~~~~f~~~~~~v~va---- 140 (184)
..+|=.+.-+. ...+..+.+||.|.++.|+.+.+.|+..+-.++.+
T Consensus 238 ~a~eK~~~lv~~L~~~~~kK~iVFF~TCasVeYf~~~~~~~l~~~~i~~iHGK~~q~~R~k~~~~F~~~~~~vl~~TDVa 317 (567)
T KOG0345|consen 238 EADEKLSQLVHLLNNNKDKKCIVFFPTCASVEYFGKLFSRLLKKREIFSIHGKMSQKARAKVLEAFRKLSNGVLFCTDVA 317 (567)
T ss_pred cHHHHHHHHHHHHhccccccEEEEecCcchHHHHHHHHHHHhCCCcEEEecchhcchhHHHHHHHHHhccCceEEeehhh
Confidence 12333333331 24566789999999999999999999855555554
Q ss_pred ---EecCCccEEEecCCCCCccccccccccc-cCCcc
Q psy437 141 ---WKIQWKRIIWIHSLVLIKPDYLPPILDL-RLGRE 173 (184)
Q Consensus 141 ---~D~~~vr~v~~~~~p~~~e~y~~~i~~~-~~~r~ 173 (184)
+|+|+|.+|+++|+|+.+..++||.+++ |+||+
T Consensus 318 ARGlDip~iD~VvQ~DpP~~~~~FvHR~GRTaR~gr~ 354 (567)
T KOG0345|consen 318 ARGLDIPGIDLVVQFDPPKDPSSFVHRCGRTARAGRE 354 (567)
T ss_pred hccCCCCCceEEEecCCCCChhHHHhhcchhhhccCc
Confidence 6999999999999999999999999985 88887
No 110
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=99.28 E-value=5.5e-11 Score=98.99 Aligned_cols=85 Identities=14% Similarity=-0.005 Sum_probs=71.7
Q ss_pred CCCcEEEEeccHHHHHHHHHHHHhCC--CeeEEecCCCCHHHHHHHHHHHhccCceEEEEEeecccHHHHHHHHHhcCCc
Q psy437 33 SGQSGIVYCLTRKECDSVAAALAQER--INAISYHAGLADKLRNEVQMKWISNKVHVGHWTVVSKECDSVAAALAQERIN 110 (184)
Q Consensus 33 ~~~~~IIf~~tr~~~e~la~~L~~~g--i~~~~~hg~l~~~~R~~~~~~f~~g~~~vlVaT~tr~~~e~~a~gL~~~gi~ 110 (184)
.+.++||||+|++.++.++..|++.+ +.+..+||.+++.+|.+. ++.++||||+ .+++|||.+.+
T Consensus 271 ~~~k~LIf~nt~~~~~~l~~~L~~~~~~~~~~~l~g~~~~~~R~~~------~~~~iLVaTd------v~~rGiDi~~~- 337 (357)
T TIGR03158 271 PGERGAIILDSLDEVNRLSDLLQQQGLGDDIGRITGFAPKKDRERA------MQFDILLGTS------TVDVGVDFKRD- 337 (357)
T ss_pred CCCeEEEEECCHHHHHHHHHHHhhhCCCceEEeeecCCCHHHHHHh------ccCCEEEEec------HHhcccCCCCc-
Confidence 45689999999999999999999864 578889999999988755 3678999999 89999999876
Q ss_pred EEEeeCCCChHHHHHHHHHhhCC
Q psy437 111 AISYHAGLADKLRNEVQMKWISN 133 (184)
Q Consensus 111 ~~vih~~~p~~~r~~~~~~f~~~ 133 (184)
.+++ + |.+..+|+||.+|.|
T Consensus 338 -~vi~-~-p~~~~~yiqR~GR~g 357 (357)
T TIGR03158 338 -WLIF-S-ARDAAAFWQRLGRLG 357 (357)
T ss_pred -eEEE-C-CCCHHHHhhhcccCC
Confidence 3443 3 888999999988765
No 111
>PRK00254 ski2-like helicase; Provisional
Probab=99.27 E-value=3.3e-11 Score=108.58 Aligned_cols=95 Identities=21% Similarity=0.240 Sum_probs=79.4
Q ss_pred CCCcEEEEeccHHHHHHHHHHHHhC---------------------------------CCeeEEecCCCCHHHHHHHHHH
Q psy437 33 SGQSGIVYCLTRKECDSVAAALAQE---------------------------------RINAISYHAGLADKLRNEVQMK 79 (184)
Q Consensus 33 ~~~~~IIf~~tr~~~e~la~~L~~~---------------------------------gi~~~~~hg~l~~~~R~~~~~~ 79 (184)
.+.++||||+||+.|+.++..|... ...+.++||||++++|..+.+.
T Consensus 237 ~~~~vLVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~~hHagl~~~eR~~ve~~ 316 (720)
T PRK00254 237 KGKGALVFVNTRRSAEKEALELAKKIKRFLTKPELRALKELADSLEENPTNEKLKKALRGGVAFHHAGLGRTERVLIEDA 316 (720)
T ss_pred hCCCEEEEEcChHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCcHHHHHHHhhCEEEeCCCCCHHHHHHHHHH
Confidence 4578999999999999888776421 2248899999999999999999
Q ss_pred HhccCceEEEEEeecccHHHHHHHHHhcCCcEEEee-------CCCCh-HHHHHHHHHhhCCC
Q psy437 80 WISNKVHVGHWTVVSKECDSVAAALAQERINAISYH-------AGLAD-KLRNEVQMKWISNK 134 (184)
Q Consensus 80 f~~g~~~vlVaT~tr~~~e~~a~gL~~~gi~~~vih-------~~~p~-~~r~~~~~~f~~~~ 134 (184)
|++|..+|||||+ .+|.|++.++++ +||+ ++.|. ..-+|.|+.++.|.
T Consensus 317 F~~G~i~VLvaT~------tLa~Gvnipa~~-vVI~~~~~~~~~~~~~~~~~~~~Qm~GRAGR 372 (720)
T PRK00254 317 FREGLIKVITATP------TLSAGINLPAFR-VIIRDTKRYSNFGWEDIPVLEIQQMMGRAGR 372 (720)
T ss_pred HHCCCCeEEEeCc------HHhhhcCCCceE-EEECCceEcCCCCceeCCHHHHHHhhhccCC
Confidence 9999999999999 889999999998 6674 45554 45688999988765
No 112
>PRK12906 secA preprotein translocase subunit SecA; Reviewed
Probab=99.26 E-value=1.7e-11 Score=109.63 Aligned_cols=122 Identities=14% Similarity=0.063 Sum_probs=100.0
Q ss_pred CCCCCCeEEEEE-----EccChHHHHHHHHHhh-cCCCcEEEEeccHHHHHHHHHHHHhCCCeeEEecCCCCHHHHHHHH
Q psy437 4 SFNRANLKYEIL-----PKKNVLKEVISLIKAK-YSGQSGIVYCLTRKECDSVAAALAQERINAISYHAGLADKLRNEVQ 77 (184)
Q Consensus 4 s~~R~Nl~y~v~-----~~~~k~~~L~~~l~~~-~~~~~~IIf~~tr~~~e~la~~L~~~gi~~~~~hg~l~~~~R~~~~ 77 (184)
|.+||.+..... ....|...|.+.+.+. ..+.|+||||+|...++.++..|.+.|+++..+||++++.++..+.
T Consensus 404 Ptnkp~~r~d~~d~i~~t~~~K~~al~~~i~~~~~~g~pvLI~t~si~~se~ls~~L~~~gi~~~~Lna~~~~~Ea~ii~ 483 (796)
T PRK12906 404 PTNRPVIRKDSPDLLYPTLDSKFNAVVKEIKERHAKGQPVLVGTVAIESSERLSHLLDEAGIPHAVLNAKNHAKEAEIIM 483 (796)
T ss_pred CCCCCeeeeeCCCeEEcCHHHHHHHHHHHHHHHHhCCCCEEEEeCcHHHHHHHHHHHHHCCCCeeEecCCcHHHHHHHHH
Confidence 566776553322 2234888888888542 3678999999999999999999999999999999999988888888
Q ss_pred HHHhccCceEEEEEeecccHHHHHHHHHhc---CCc----EEEeeCCCChHHHHHHHHHhhCC
Q psy437 78 MKWISNKVHVGHWTVVSKECDSVAAALAQE---RIN----AISYHAGLADKLRNEVQMKWISN 133 (184)
Q Consensus 78 ~~f~~g~~~vlVaT~tr~~~e~~a~gL~~~---gi~----~~vih~~~p~~~r~~~~~~f~~~ 133 (184)
+.+..|. |+|||+ .++||+|++ +|. -+||++++|.+.|.|.|+.+|+|
T Consensus 484 ~ag~~g~--VtIATn------mAGRGtDI~l~~~V~~~GGLhVI~te~pes~ri~~Ql~GRtG 538 (796)
T PRK12906 484 NAGQRGA--VTIATN------MAGRGTDIKLGPGVKELGGLAVIGTERHESRRIDNQLRGRSG 538 (796)
T ss_pred hcCCCce--EEEEec------cccCCCCCCCCcchhhhCCcEEEeeecCCcHHHHHHHhhhhc
Confidence 8888776 899999 888999984 554 28999999999999999997665
No 113
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=99.26 E-value=2.7e-11 Score=107.70 Aligned_cols=96 Identities=13% Similarity=0.072 Sum_probs=88.2
Q ss_pred HHHHHhccCceEEEEEeecccHHHHHHHHHhcCCcEEEeeCCCChHHHHHHHHHhhCCCceEEEE-------EecCCccE
Q psy437 76 VQMKWISNKVHVGHWTVVSKECDSVAAALAQERINAISYHAGLADKLRNEVQMKWISNKVHLYNV-------WKIQWKRI 148 (184)
Q Consensus 76 ~~~~f~~g~~~vlVaT~tr~~~e~~a~gL~~~gi~~~vih~~~p~~~r~~~~~~f~~~~~~v~va-------~D~~~vr~ 148 (184)
-+..+.....++||+|++++.++.++..|...|+++..+|+++++..|..+.+.|+.|++.|+|+ ||+|++++
T Consensus 434 eI~~~~~~g~~vLIf~~tk~~ae~L~~~L~~~gi~~~~lh~~~~~~eR~~~l~~fr~G~i~VLV~t~~L~rGfDiP~v~l 513 (655)
T TIGR00631 434 EIRQRVARNERVLVTTLTKKMAEDLTDYLKELGIKVRYLHSEIDTLERVEIIRDLRLGEFDVLVGINLLREGLDLPEVSL 513 (655)
T ss_pred HHHHHHcCCCEEEEEECCHHHHHHHHHHHhhhccceeeeeCCCCHHHHHHHHHHHhcCCceEEEEcChhcCCeeeCCCcE
Confidence 34455666778999999999999999999999999999999999999999999999999999987 79999999
Q ss_pred EEecC-----CCCCccccccccccccCCcc
Q psy437 149 IWIHS-----LVLIKPDYLPPILDLRLGRE 173 (184)
Q Consensus 149 v~~~~-----~p~~~e~y~~~i~~~~~~r~ 173 (184)
|++++ .|.+.++|+|++ +|+||.
T Consensus 514 Vvi~DadifG~p~~~~~~iqri--GRagR~ 541 (655)
T TIGR00631 514 VAILDADKEGFLRSERSLIQTI--GRAARN 541 (655)
T ss_pred EEEeCcccccCCCCHHHHHHHh--cCCCCC
Confidence 99999 899999999999 588885
No 114
>KOG0337|consensus
Probab=99.26 E-value=2.2e-12 Score=106.62 Aligned_cols=109 Identities=13% Similarity=0.067 Sum_probs=99.2
Q ss_pred EEccChHHHHHHHHHhhcCCCcEEEEeccHHHHHHHHHHHHhCCCeeEEecCCCCHHHHHHHHHHHhccCceEEEEEeec
Q psy437 15 LPKKNVLKEVISLIKAKYSGQSGIVYCLTRKECDSVAAALAQERINAISYHAGLADKLRNEVQMKWISNKVHVGHWTVVS 94 (184)
Q Consensus 15 ~~~~~k~~~L~~~l~~~~~~~~~IIf~~tr~~~e~la~~L~~~gi~~~~~hg~l~~~~R~~~~~~f~~g~~~vlVaT~tr 94 (184)
++..+|...|+.++.+.....+++|||+|+..+|.+...|...|+.+..++|.|++..|..-..+|..++..++|.|+
T Consensus 242 ~~~a~K~aaLl~il~~~~~~~~t~vf~~tk~hve~~~~ll~~~g~~~s~iysslD~~aRk~~~~~F~~~k~~~lvvTd-- 319 (529)
T KOG0337|consen 242 VRKAEKEAALLSILGGRIKDKQTIVFVATKHHVEYVRGLLRDFGGEGSDIYSSLDQEARKINGRDFRGRKTSILVVTD-- 319 (529)
T ss_pred eccHHHHHHHHHHHhccccccceeEEecccchHHHHHHHHHhcCCCccccccccChHhhhhccccccCCccceEEEeh--
Confidence 334457788888886654556899999999999999999999999999999999999999999999999999999999
Q ss_pred ccHHHHHHHHHhcCCcEEEeeCCCChHHHHHHHHHh
Q psy437 95 KECDSVAAALAQERINAISYHAGLADKLRNEVQMKW 130 (184)
Q Consensus 95 ~~~e~~a~gL~~~gi~~~vih~~~p~~~r~~~~~~f 130 (184)
..|+|+|++..+ -|+|+++|.+.+-++||..
T Consensus 320 ----vaaRG~diplld-nvinyd~p~~~klFvhRVg 350 (529)
T KOG0337|consen 320 ----VAARGLDIPLLD-NVINYDFPPDDKLFVHRVG 350 (529)
T ss_pred ----hhhccCCCcccc-ccccccCCCCCceEEEEec
Confidence 899999999999 9999999999999999984
No 115
>PRK12900 secA preprotein translocase subunit SecA; Reviewed
Probab=99.25 E-value=2.3e-11 Score=110.18 Aligned_cols=122 Identities=11% Similarity=0.089 Sum_probs=101.6
Q ss_pred CCCCCCeEEEE-----EEccChHHHHHHHHHhh-cCCCcEEEEeccHHHHHHHHHHHHhCCCeeEEecCCCCHHHHHHHH
Q psy437 4 SFNRANLKYEI-----LPKKNVLKEVISLIKAK-YSGQSGIVYCLTRKECDSVAAALAQERINAISYHAGLADKLRNEVQ 77 (184)
Q Consensus 4 s~~R~Nl~y~v-----~~~~~k~~~L~~~l~~~-~~~~~~IIf~~tr~~~e~la~~L~~~gi~~~~~hg~l~~~~R~~~~ 77 (184)
|.+||.+.-.. .....|...|.+.+... ..+.|+||||+|++.++.++..|...|+++.++|+ .+.+|+..+
T Consensus 562 PTnrP~~R~D~~d~vy~t~~eK~~Ali~~I~~~~~~grpVLIft~Sve~sE~Ls~~L~~~gI~h~vLna--kq~~REa~I 639 (1025)
T PRK12900 562 PTNKPIVRKDMDDLVYKTRREKYNAIVLKVEELQKKGQPVLVGTASVEVSETLSRMLRAKRIAHNVLNA--KQHDREAEI 639 (1025)
T ss_pred CCCCCcceecCCCeEecCHHHHHHHHHHHHHHHhhCCCCEEEEeCcHHHHHHHHHHHHHcCCCceeecC--CHHHhHHHH
Confidence 56677654321 22235888898888543 36789999999999999999999999999999997 588999999
Q ss_pred HHHhccCceEEEEEeecccHHHHHHHHHhc---CCcE----EEeeCCCChHHHHHHHHHhhCC
Q psy437 78 MKWISNKVHVGHWTVVSKECDSVAAALAQE---RINA----ISYHAGLADKLRNEVQMKWISN 133 (184)
Q Consensus 78 ~~f~~g~~~vlVaT~tr~~~e~~a~gL~~~---gi~~----~vih~~~p~~~r~~~~~~f~~~ 133 (184)
..|..+...|+|||+ .++||+|++ +|.. +||+...|.+.|.|.|+.+++|
T Consensus 640 ia~AG~~g~VtIATN------MAGRGtDIkl~~~V~~vGGL~VIgterhes~Rid~Ql~GRtG 696 (1025)
T PRK12900 640 VAEAGQKGAVTIATN------MAGRGTDIKLGEGVRELGGLFILGSERHESRRIDRQLRGRAG 696 (1025)
T ss_pred HHhcCCCCeEEEecc------CcCCCCCcCCccchhhhCCceeeCCCCCchHHHHHHHhhhhh
Confidence 999999999999999 889999988 5541 5799999999999999997765
No 116
>PRK09751 putative ATP-dependent helicase Lhr; Provisional
Probab=99.25 E-value=1.5e-10 Score=109.72 Aligned_cols=162 Identities=15% Similarity=0.103 Sum_probs=113.5
Q ss_pred CeEEEEEEcc-----Ch----HHHHHHHHHhhc-CCCcEEEEeccHHHHHHHHHHHHhC-C-------------CeeEEe
Q psy437 9 NLKYEILPKK-----NV----LKEVISLIKAKY-SGQSGIVYCLTRKECDSVAAALAQE-R-------------INAISY 64 (184)
Q Consensus 9 Nl~y~v~~~~-----~k----~~~L~~~l~~~~-~~~~~IIf~~tr~~~e~la~~L~~~-g-------------i~~~~~ 64 (184)
|+.|.|..+- .| +..+++.|.... .+.+.|-+..|....+.++++|... . +.....
T Consensus 124 ~Vr~VIVDE~H~L~g~kRG~~Lel~LeRL~~l~~~~~QrIgLSATI~n~eevA~~L~g~~pv~Iv~~~~~r~~~l~v~vp 203 (1490)
T PRK09751 124 GVETVIIDEVHAVAGSKRGAHLALSLERLDALLHTSAQRIGLSATVRSASDVAAFLGGDRPVTVVNPPAMRHPQIRIVVP 203 (1490)
T ss_pred cCCEEEEecHHHhcccccccHHHHHHHHHHHhCCCCCeEEEEEeeCCCHHHHHHHhcCCCCEEEECCCCCcccceEEEEe
Confidence 4567766542 12 334444454332 3456788899999899999999532 1 111111
Q ss_pred cCCCCH----------------------HHHHHHHHHHhccCceEEEEEeecccHHHHHHHHHhcC--------------
Q psy437 65 HAGLAD----------------------KLRNEVQMKWISNKVHVGHWTVVSKECDSVAAALAQER-------------- 108 (184)
Q Consensus 65 hg~l~~----------------------~~R~~~~~~f~~g~~~vlVaT~tr~~~e~~a~gL~~~g-------------- 108 (184)
..++.. .....++....+ ..++||+|++|+.||.++..|....
T Consensus 204 ~~d~~~~~~~~~~~~~~~~~~r~~~i~~~v~~~il~~i~~-~~stLVFvNSR~~AE~La~~L~~~~~~~~~~~~~~~~~~ 282 (1490)
T PRK09751 204 VANMDDVSSVASGTGEDSHAGREGSIWPYIETGILDEVLR-HRSTIVFTNSRGLAEKLTARLNELYAARLQRSPSIAVDA 282 (1490)
T ss_pred cCchhhccccccccccccchhhhhhhhHHHHHHHHHHHhc-CCCEEEECCCHHHHHHHHHHHHHhhhhhccccccccchh
Confidence 111110 001123333333 4578999999999999999886421
Q ss_pred -------------------CcEEEeeCCCChHHHHHHHHHhhCCCceEEEE-------EecCCccEEEecCCCCCccccc
Q psy437 109 -------------------INAISYHAGLADKLRNEVQMKWISNKVHLYNV-------WKIQWKRIIWIHSLVLIKPDYL 162 (184)
Q Consensus 109 -------------------i~~~vih~~~p~~~r~~~~~~f~~~~~~v~va-------~D~~~vr~v~~~~~p~~~e~y~ 162 (184)
..+.++|++++++.|..+.+.|++|+++++|| +|+++++.||+++.|.+..+|+
T Consensus 283 ~~~~~~~~~~~~~~~~~~~~ia~~HHGsLSkeeR~~IE~~fK~G~LrvLVATssLELGIDIg~VDlVIq~gsP~sVas~L 362 (1490)
T PRK09751 283 AHFESTSGATSNRVQSSDVFIARSHHGSVSKEQRAITEQALKSGELRCVVATSSLELGIDMGAVDLVIQVATPLSVASGL 362 (1490)
T ss_pred hhhhhccccchhccccccceeeeeccccCCHHHHHHHHHHHHhCCceEEEeCcHHHccCCcccCCEEEEeCCCCCHHHHH
Confidence 12468999999999999999999999999999 6999999999999999999999
Q ss_pred cccccccCCcc
Q psy437 163 PPILDLRLGRE 173 (184)
Q Consensus 163 ~~i~~~~~~r~ 173 (184)
|++ +|+||.
T Consensus 363 QRi--GRAGR~ 371 (1490)
T PRK09751 363 QRI--GRAGHQ 371 (1490)
T ss_pred HHh--CCCCCC
Confidence 999 588885
No 117
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=99.24 E-value=3.6e-11 Score=107.09 Aligned_cols=96 Identities=14% Similarity=0.067 Sum_probs=87.3
Q ss_pred HHHHHhccCceEEEEEeecccHHHHHHHHHhcCCcEEEeeCCCChHHHHHHHHHhhCCCceEEEE-------EecCCccE
Q psy437 76 VQMKWISNKVHVGHWTVVSKECDSVAAALAQERINAISYHAGLADKLRNEVQMKWISNKVHLYNV-------WKIQWKRI 148 (184)
Q Consensus 76 ~~~~f~~g~~~vlVaT~tr~~~e~~a~gL~~~gi~~~vih~~~p~~~r~~~~~~f~~~~~~v~va-------~D~~~vr~ 148 (184)
.+..|.....++||+|++++.++.++..|...|+++.++|+++++..|..+.+.|+.|++.|+|+ ||+|++++
T Consensus 438 ~L~~~~~~g~~viIf~~t~~~ae~L~~~L~~~gi~~~~~h~~~~~~~R~~~l~~f~~g~i~vlV~t~~L~rGfdlp~v~l 517 (652)
T PRK05298 438 EIRKRVAKGERVLVTTLTKRMAEDLTDYLKELGIKVRYLHSDIDTLERVEIIRDLRLGEFDVLVGINLLREGLDIPEVSL 517 (652)
T ss_pred HHHHHHhCCCEEEEEeCCHHHHHHHHHHHhhcceeEEEEECCCCHHHHHHHHHHHHcCCceEEEEeCHHhCCccccCCcE
Confidence 34556666788999999999999999999999999999999999999999999999999999987 79999999
Q ss_pred EEecCC-----CCCccccccccccccCCcc
Q psy437 149 IWIHSL-----VLIKPDYLPPILDLRLGRE 173 (184)
Q Consensus 149 v~~~~~-----p~~~e~y~~~i~~~~~~r~ 173 (184)
|++++. |.+.++|+|++ ||+||.
T Consensus 518 Vii~d~eifG~~~~~~~yiqr~--GR~gR~ 545 (652)
T PRK05298 518 VAILDADKEGFLRSERSLIQTI--GRAARN 545 (652)
T ss_pred EEEeCCcccccCCCHHHHHHHh--ccccCC
Confidence 999985 78999999999 588884
No 118
>KOG4284|consensus
Probab=99.24 E-value=5.6e-11 Score=102.91 Aligned_cols=75 Identities=13% Similarity=0.104 Sum_probs=71.1
Q ss_pred cHHHHHHHHHhcCCcEEEeeCCCChHHHHHHHHHhhCCCceEEEE-------EecCCccEEEecCCCCCccccccccccc
Q psy437 96 ECDSVAAALAQERINAISYHAGLADKLRNEVQMKWISNKVHLYNV-------WKIQWKRIIWIHSLVLIKPDYLPPILDL 168 (184)
Q Consensus 96 ~~e~~a~gL~~~gi~~~vih~~~p~~~r~~~~~~f~~~~~~v~va-------~D~~~vr~v~~~~~p~~~e~y~~~i~~~ 168 (184)
.|+-+|..|...|++|..|.+.|.|+.|--+....+.-.++|+|+ +|-+++.+|+|.|.|.+-+.|+|||+
T Consensus 284 ra~~~a~~L~ssG~d~~~ISgaM~Q~~Rl~a~~~lr~f~~rILVsTDLtaRGIDa~~vNLVVNiD~p~d~eTY~HRIG-- 361 (980)
T KOG4284|consen 284 RAEPIATHLKSSGLDVTFISGAMSQKDRLLAVDQLRAFRVRILVSTDLTARGIDADNVNLVVNIDAPADEETYFHRIG-- 361 (980)
T ss_pred hhhHHHHHhhccCCCeEEeccccchhHHHHHHHHhhhceEEEEEecchhhccCCccccceEEecCCCcchHHHHHHhh--
Confidence 689999999999999999999999999999999999999999999 59999999999999999999999995
Q ss_pred cCCc
Q psy437 169 RLGR 172 (184)
Q Consensus 169 ~~~r 172 (184)
|+||
T Consensus 362 RAgR 365 (980)
T KOG4284|consen 362 RAGR 365 (980)
T ss_pred hccc
Confidence 7776
No 119
>PRK04914 ATP-dependent helicase HepA; Validated
Probab=99.23 E-value=4.6e-11 Score=109.46 Aligned_cols=101 Identities=17% Similarity=0.195 Sum_probs=86.8
Q ss_pred HHHHHHHHhcc--CceEEEEEeecccHHHHHHHH-HhcCCcEEEeeCCCChHHHHHHHHHhhCC--CceEEEE-------
Q psy437 73 RNEVQMKWISN--KVHVGHWTVVSKECDSVAAAL-AQERINAISYHAGLADKLRNEVQMKWISN--KVHLYNV------- 140 (184)
Q Consensus 73 R~~~~~~f~~g--~~~vlVaT~tr~~~e~~a~gL-~~~gi~~~vih~~~p~~~r~~~~~~f~~~--~~~v~va------- 140 (184)
|...+..+.+. .-++||+|.++..++.++..| ...|+++.+||+++|+..|..+.+.|+++ ...|+++
T Consensus 480 Ki~~L~~~L~~~~~~KvLVF~~~~~t~~~L~~~L~~~~Gi~~~~ihG~~s~~eR~~~~~~F~~~~~~~~VLIsTdvgseG 559 (956)
T PRK04914 480 RVEWLIDFLKSHRSEKVLVICAKAATALQLEQALREREGIRAAVFHEGMSIIERDRAAAYFADEEDGAQVLLCSEIGSEG 559 (956)
T ss_pred HHHHHHHHHHhcCCCeEEEEeCcHHHHHHHHHHHhhccCeeEEEEECCCCHHHHHHHHHHHhcCCCCccEEEechhhccC
Confidence 44444455442 458999999999999999999 67899999999999999999999999974 5889988
Q ss_pred EecCCccEEEecCCCCCccccccccccc-cCCcc
Q psy437 141 WKIQWKRIIWIHSLVLIKPDYLPPILDL-RLGRE 173 (184)
Q Consensus 141 ~D~~~vr~v~~~~~p~~~e~y~~~i~~~-~~~r~ 173 (184)
.|.+.+++|||||+|.+++.|.|+|+++ |.|+.
T Consensus 560 lNlq~a~~VInfDlP~nP~~~eQRIGR~~RiGQ~ 593 (956)
T PRK04914 560 RNFQFASHLVLFDLPFNPDLLEQRIGRLDRIGQK 593 (956)
T ss_pred CCcccccEEEEecCCCCHHHHHHHhcccccCCCC
Confidence 5999999999999999999999999764 66664
No 120
>PHA02653 RNA helicase NPH-II; Provisional
Probab=99.20 E-value=4.3e-10 Score=100.15 Aligned_cols=85 Identities=13% Similarity=0.063 Sum_probs=73.4
Q ss_pred ceEEEEEeecccHHHHHHHHHhc--CCcEEEeeCCCChHHHHHHHHHh-hCCCceEEEE-------EecCCccEEEecC-
Q psy437 85 VHVGHWTVVSKECDSVAAALAQE--RINAISYHAGLADKLRNEVQMKW-ISNKVHLYNV-------WKIQWKRIIWIHS- 153 (184)
Q Consensus 85 ~~vlVaT~tr~~~e~~a~gL~~~--gi~~~vih~~~p~~~r~~~~~~f-~~~~~~v~va-------~D~~~vr~v~~~~- 153 (184)
.++||++++.++|+.+++.|... ++.+..+|+++|+. +...+.| ++|+.+|++| +|+|+|++||+++
T Consensus 396 g~iLVFlpg~~ei~~l~~~L~~~~~~~~v~~LHG~Lsq~--eq~l~~ff~~gk~kILVATdIAERGIDIp~V~~VID~G~ 473 (675)
T PHA02653 396 SSGIVFVASVSQCEEYKKYLEKRLPIYDFYIIHGKVPNI--DEILEKVYSSKNPSIIISTPYLESSVTIRNATHVYDTGR 473 (675)
T ss_pred CcEEEEECcHHHHHHHHHHHHhhcCCceEEeccCCcCHH--HHHHHHHhccCceeEEeccChhhccccccCeeEEEECCC
Confidence 47999999999999999999876 79999999999985 3444555 7899999999 6999999999998
Q ss_pred --CCC---------CccccccccccccCCcc
Q psy437 154 --LVL---------IKPDYLPPILDLRLGRE 173 (184)
Q Consensus 154 --~p~---------~~e~y~~~i~~~~~~r~ 173 (184)
.|. +..+|.||. +|+||.
T Consensus 474 ~k~p~~~~g~~~~iSkasa~QRa--GRAGR~ 502 (675)
T PHA02653 474 VYVPEPFGGKEMFISKSMRTQRK--GRVGRV 502 (675)
T ss_pred ccCCCcccCcccccCHHHHHHhc--cCcCCC
Confidence 665 777999998 588886
No 121
>KOG0344|consensus
Probab=99.20 E-value=3e-10 Score=97.17 Aligned_cols=97 Identities=16% Similarity=0.126 Sum_probs=86.3
Q ss_pred HHHHhcc-CceEEEEEeecccHHHHHHHH-HhcCCcEEEeeCCCChHHHHHHHHHhhCCCceEEEE-------EecCCcc
Q psy437 77 QMKWISN-KVHVGHWTVVSKECDSVAAAL-AQERINAISYHAGLADKLRNEVQMKWISNKVHLYNV-------WKIQWKR 147 (184)
Q Consensus 77 ~~~f~~g-~~~vlVaT~tr~~~e~~a~gL-~~~gi~~~vih~~~p~~~r~~~~~~f~~~~~~v~va-------~D~~~vr 147 (184)
.+-+.+| .-++||+.-+...|..+..-| ..++|++.|||++.++..|+...+.|+.|++-++++ +|..+++
T Consensus 379 rq~v~~g~~PP~lIfVQs~eRak~L~~~L~~~~~i~v~vIh~e~~~~qrde~~~~FR~g~IwvLicTdll~RGiDf~gvn 458 (593)
T KOG0344|consen 379 RQLVASGFKPPVLIFVQSKERAKQLFEELEIYDNINVDVIHGERSQKQRDETMERFRIGKIWVLICTDLLARGIDFKGVN 458 (593)
T ss_pred HHHHhccCCCCeEEEEecHHHHHHHHHHhhhccCcceeeEecccchhHHHHHHHHHhccCeeEEEehhhhhccccccCcc
Confidence 3334444 347999999999999999999 899999999999999999999999999999999999 5999999
Q ss_pred EEEecCCCCCcccccccccc-ccCCcc
Q psy437 148 IIWIHSLVLIKPDYLPPILD-LRLGRE 173 (184)
Q Consensus 148 ~v~~~~~p~~~e~y~~~i~~-~~~~r~ 173 (184)
.|||||.|.+.-+|+|+|++ +|+||.
T Consensus 459 ~VInyD~p~s~~syihrIGRtgRag~~ 485 (593)
T KOG0344|consen 459 LVINYDFPQSDLSYIHRIGRTGRAGRS 485 (593)
T ss_pred eEEecCCCchhHHHHHHhhccCCCCCC
Confidence 99999999999999999976 366664
No 122
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=99.18 E-value=6.6e-10 Score=96.69 Aligned_cols=107 Identities=20% Similarity=0.260 Sum_probs=101.9
Q ss_pred CCcEEEEeccHHHHHHHHHHHHhCCCeeEEecCCCCHHHHHHHHHHHhccCceE--------------------------
Q psy437 34 GQSGIVYCLTRKECDSVAAALAQERINAISYHAGLADKLRNEVQMKWISNKVHV-------------------------- 87 (184)
Q Consensus 34 ~~~~IIf~~tr~~~e~la~~L~~~gi~~~~~hg~l~~~~R~~~~~~f~~g~~~v-------------------------- 87 (184)
.+.+||..|-....++-...|...|+.++++++.++.++|..++.++..|+.++
T Consensus 57 ~G~TLVVSPLiSLM~DQV~~l~~~Gi~A~~lnS~l~~~e~~~v~~~l~~g~~klLyisPErl~~~~f~~~L~~~~i~l~v 136 (590)
T COG0514 57 EGLTLVVSPLISLMKDQVDQLEAAGIRAAYLNSTLSREERQQVLNQLKSGQLKLLYISPERLMSPRFLELLKRLPISLVA 136 (590)
T ss_pred CCCEEEECchHHHHHHHHHHHHHcCceeehhhcccCHHHHHHHHHHHhcCceeEEEECchhhcChHHHHHHHhCCCceEE
Confidence 468999999999999999999999999999999999999999999999998877
Q ss_pred --------------------------------------------------------------------------------
Q psy437 88 -------------------------------------------------------------------------------- 87 (184)
Q Consensus 88 -------------------------------------------------------------------------------- 87 (184)
T Consensus 137 IDEAHCiSqWGhdFRP~Y~~lg~l~~~~~~~p~~AlTATA~~~v~~DI~~~L~l~~~~~~~~sfdRpNi~~~v~~~~~~~ 216 (590)
T COG0514 137 IDEAHCISQWGHDFRPDYRRLGRLRAGLPNPPVLALTATATPRVRDDIREQLGLQDANIFRGSFDRPNLALKVVEKGEPS 216 (590)
T ss_pred echHHHHhhcCCccCHhHHHHHHHHhhCCCCCEEEEeCCCChHHHHHHHHHhcCCCcceEEecCCCchhhhhhhhcccHH
Confidence
Q ss_pred -----------------EEEEeecccHHHHHHHHHhcCCcEEEeeCCCChHHHHHHHHHhhCCCceEEEE
Q psy437 88 -----------------GHWTVVSKECDSVAAALAQERINAISYHAGLADKLRNEVQMKWISNKVHLYNV 140 (184)
Q Consensus 88 -----------------lVaT~tr~~~e~~a~gL~~~gi~~~vih~~~p~~~r~~~~~~f~~~~~~v~va 140 (184)
||||.||++||.+|++|...|+++..||+||+...|..+|+.|..++++|+||
T Consensus 217 ~q~~fi~~~~~~~~~~GIIYc~sRk~~E~ia~~L~~~g~~a~~YHaGl~~~eR~~~q~~f~~~~~~iiVA 286 (590)
T COG0514 217 DQLAFLATVLPQLSKSGIIYCLTRKKVEELAEWLRKNGISAGAYHAGLSNEERERVQQAFLNDEIKVMVA 286 (590)
T ss_pred HHHHHHHhhccccCCCeEEEEeeHHhHHHHHHHHHHCCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEE
Confidence 78888889999999999999999999999999999999999999999999998
No 123
>KOG0354|consensus
Probab=99.17 E-value=1.9e-10 Score=101.59 Aligned_cols=106 Identities=18% Similarity=0.189 Sum_probs=91.2
Q ss_pred ChHHHHHHHHHhhc---CCCcEEEEeccHHHHHHHHHHHHh---CCCeeEEec--------CCCCHHHHHHHHHHHhccC
Q psy437 19 NVLKEVISLIKAKY---SGQSGIVYCLTRKECDSVAAALAQ---ERINAISYH--------AGLADKLRNEVQMKWISNK 84 (184)
Q Consensus 19 ~k~~~L~~~l~~~~---~~~~~IIf~~tr~~~e~la~~L~~---~gi~~~~~h--------g~l~~~~R~~~~~~f~~g~ 84 (184)
.|++.|.+.|.+.+ +...+||||.||+.|+.|..+|.. .|+++..+- .||++++..+++++|++|+
T Consensus 395 pkle~l~~~l~e~f~~~~dsR~IIFve~R~sa~~l~~~l~~~~~~~ir~~~fiGq~~s~~~~gmtqk~Q~evl~~Fr~G~ 474 (746)
T KOG0354|consen 395 PKLEKLVEILVEQFEQNPDSRTIIFVETRESALALKKWLLQLHELGIKAEIFIGQGKSTQSTGMTQKEQKEVLDKFRDGE 474 (746)
T ss_pred hhHHHHHHHHHHHhhcCCCccEEEEEehHHHHHHHHHHHHhhhhcccccceeeeccccccccccCHHHHHHHHHHHhCCC
Confidence 48888888886543 556799999999999999999983 244443333 4899999999999999999
Q ss_pred ceEEEEEeecccHHHHHHHHHhcCCcEEEeeCCCChHHHHHHHHHhh
Q psy437 85 VHVGHWTVVSKECDSVAAALAQERINAISYHAGLADKLRNEVQMKWI 131 (184)
Q Consensus 85 ~~vlVaT~tr~~~e~~a~gL~~~gi~~~vih~~~p~~~r~~~~~~f~ 131 (184)
.++||||+ ..-+|||+..++ .||-||...++-..+||.+|
T Consensus 475 ~NvLVATS------V~EEGLDI~ec~-lVIcYd~~snpIrmIQrrGR 514 (746)
T KOG0354|consen 475 INVLVATS------VAEEGLDIGECN-LVICYDYSSNPIRMVQRRGR 514 (746)
T ss_pred ccEEEEec------chhccCCccccc-EEEEecCCccHHHHHHHhcc
Confidence 99999999 777899999999 99999999999999999966
No 124
>PRK01172 ski2-like helicase; Provisional
Probab=99.16 E-value=2.7e-10 Score=102.03 Aligned_cols=95 Identities=19% Similarity=0.117 Sum_probs=78.7
Q ss_pred CCCcEEEEeccHHHHHHHHHHHHhC-----C--------------------CeeEEecCCCCHHHHHHHHHHHhccCceE
Q psy437 33 SGQSGIVYCLTRKECDSVAAALAQE-----R--------------------INAISYHAGLADKLRNEVQMKWISNKVHV 87 (184)
Q Consensus 33 ~~~~~IIf~~tr~~~e~la~~L~~~-----g--------------------i~~~~~hg~l~~~~R~~~~~~f~~g~~~v 87 (184)
.++++||||+|++.|+.++..|... . ..+.++||+|++++|..+.+.|++|..+|
T Consensus 235 ~~~~vLVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~~~hagl~~~eR~~ve~~f~~g~i~V 314 (674)
T PRK01172 235 DGGQVLVFVSSRKNAEDYAEMLIQHFPEFNDFKVSSENNNVYDDSLNEMLPHGVAFHHAGLSNEQRRFIEEMFRNRYIKV 314 (674)
T ss_pred CCCcEEEEeccHHHHHHHHHHHHHhhhhcccccccccccccccHHHHHHHhcCEEEecCCCCHHHHHHHHHHHHcCCCeE
Confidence 4678999999999999999988653 1 24778999999999999999999999999
Q ss_pred EEEEeecccHHHHHHHHHhcCCcEEEee--------CCCChHHHHHHHHHhhCCC
Q psy437 88 GHWTVVSKECDSVAAALAQERINAISYH--------AGLADKLRNEVQMKWISNK 134 (184)
Q Consensus 88 lVaT~tr~~~e~~a~gL~~~gi~~~vih--------~~~p~~~r~~~~~~f~~~~ 134 (184)
||||+ .+|.|++.++.. +|+. +..|-+..++.|+.++.|.
T Consensus 315 LvaT~------~la~Gvnipa~~-VII~~~~~~~~~~~~~~s~~~~~Qm~GRAGR 362 (674)
T PRK01172 315 IVATP------TLAAGVNLPARL-VIVRDITRYGNGGIRYLSNMEIKQMIGRAGR 362 (674)
T ss_pred EEecc------hhhccCCCcceE-EEEcCceEeCCCCceeCCHHHHHHHhhcCCC
Confidence 99999 889999999965 3332 1124577889999988765
No 125
>PRK02362 ski2-like helicase; Provisional
Probab=99.16 E-value=3.7e-10 Score=102.08 Aligned_cols=152 Identities=13% Similarity=0.113 Sum_probs=106.7
Q ss_pred HHHHHHHHhhcCCCcEEEEeccHHHHHHHHHHHHhCCC---------eeEEecC------C----CCH---HHHHHHHHH
Q psy437 22 KEVISLIKAKYSGQSGIVYCLTRKECDSVAAALAQERI---------NAISYHA------G----LAD---KLRNEVQMK 79 (184)
Q Consensus 22 ~~L~~~l~~~~~~~~~IIf~~tr~~~e~la~~L~~~gi---------~~~~~hg------~----l~~---~~R~~~~~~ 79 (184)
+.++..++...+..+.|.++.|-..++.++++|...-+ ....+.+ + +.. ......+..
T Consensus 159 e~il~rl~~~~~~~qii~lSATl~n~~~la~wl~~~~~~~~~rpv~l~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (737)
T PRK02362 159 EVTLAKLRRLNPDLQVVALSATIGNADELADWLDAELVDSEWRPIDLREGVFYGGAIHFDDSQREVEVPSKDDTLNLVLD 238 (737)
T ss_pred HHHHHHHHhcCCCCcEEEEcccCCCHHHHHHHhCCCcccCCCCCCCCeeeEecCCeeccccccccCCCccchHHHHHHHH
Confidence 44444454332445677788888888899999863211 1111111 0 110 112222333
Q ss_pred HhccCceEEEEEeecccHHHHHHHHHhcC------------------------------------CcEEEeeCCCChHHH
Q psy437 80 WISNKVHVGHWTVVSKECDSVAAALAQER------------------------------------INAISYHAGLADKLR 123 (184)
Q Consensus 80 f~~g~~~vlVaT~tr~~~e~~a~gL~~~g------------------------------------i~~~vih~~~p~~~r 123 (184)
......++||++++|++|+.+|..|.... ..+.++|+|+|+..|
T Consensus 239 ~~~~~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~l~~gva~hHagl~~~eR 318 (737)
T PRK02362 239 TLEEGGQCLVFVSSRRNAEGFAKRAASALKKTLTAAERAELAELAEEIREVSDTETSKDLADCVAKGAAFHHAGLSREHR 318 (737)
T ss_pred HHHcCCCeEEEEeCHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhccCccccHHHHHHHHhCEEeecCCCCHHHH
Confidence 33345689999999999999998885321 235789999999999
Q ss_pred HHHHHHhhCCCceEEEE-------EecCCccEEEe----cC-----CCCCccccccccccccCCcccc
Q psy437 124 NEVQMKWISNKVHLYNV-------WKIQWKRIIWI----HS-----LVLIKPDYLPPILDLRLGREDI 175 (184)
Q Consensus 124 ~~~~~~f~~~~~~v~va-------~D~~~vr~v~~----~~-----~p~~~e~y~~~i~~~~~~r~~~ 175 (184)
..+.+.|++|.+.|+|| +|.|.++.||+ |+ .|.+..+|+|++ +|+||.+.
T Consensus 319 ~~ve~~Fr~G~i~VLvaT~tla~GvnlPa~~VVI~~~~~yd~~~g~~~~s~~~y~Qm~--GRAGR~g~ 384 (737)
T PRK02362 319 ELVEDAFRDRLIKVISSTPTLAAGLNLPARRVIIRDYRRYDGGAGMQPIPVLEYHQMA--GRAGRPGL 384 (737)
T ss_pred HHHHHHHHcCCCeEEEechhhhhhcCCCceEEEEecceeecCCCCceeCCHHHHHHHh--hcCCCCCC
Confidence 99999999999999999 59999999997 65 688999999999 58888654
No 126
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=99.15 E-value=8.5e-10 Score=100.29 Aligned_cols=138 Identities=12% Similarity=0.032 Sum_probs=102.0
Q ss_pred CCCcEEEEeccHHHHHHHHHHHHhC--------CCeeEEecCCCCHHHHHH-----HHHHH-hccCceEEEEEeecccHH
Q psy437 33 SGQSGIVYCLTRKECDSVAAALAQE--------RINAISYHAGLADKLRNE-----VQMKW-ISNKVHVGHWTVVSKECD 98 (184)
Q Consensus 33 ~~~~~IIf~~tr~~~e~la~~L~~~--------gi~~~~~hg~l~~~~R~~-----~~~~f-~~g~~~vlVaT~tr~~~e 98 (184)
+..+.|+|+.|-.. +.++..+... .+++..++-.++...+.. .+... .....++||+++++++++
T Consensus 148 ~~lqlilmSATl~~-~~l~~~~~~~~~I~~~gr~~pV~~~y~~~~~~~~~~~~v~~~l~~~l~~~~g~iLVFlpg~~ei~ 226 (812)
T PRK11664 148 DDLKLLIMSATLDN-DRLQQLLPDAPVIVSEGRSFPVERRYQPLPAHQRFDEAVARATAELLRQESGSLLLFLPGVGEIQ 226 (812)
T ss_pred ccceEEEEecCCCH-HHHHHhcCCCCEEEecCccccceEEeccCchhhhHHHHHHHHHHHHHHhCCCCEEEEcCCHHHHH
Confidence 34567888888754 4566665321 123333333333322221 23333 334568999999999999
Q ss_pred HHHHHHHh---cCCcEEEeeCCCChHHHHHHHHHhhCCCceEEEE-------EecCCccEEEecCCCCCc----------
Q psy437 99 SVAAALAQ---ERINAISYHAGLADKLRNEVQMKWISNKVHLYNV-------WKIQWKRIIWIHSLVLIK---------- 158 (184)
Q Consensus 99 ~~a~gL~~---~gi~~~vih~~~p~~~r~~~~~~f~~~~~~v~va-------~D~~~vr~v~~~~~p~~~---------- 158 (184)
.++..|.. .++.+..+|+++|++.+..+.+.|++|+.+|++| +|+|+|++||++++|+..
T Consensus 227 ~l~~~L~~~~~~~~~v~~Lhg~l~~~eq~~~~~~~~~G~rkVlvATnIAErsLtIp~V~~VID~Gl~r~~~yd~~~g~~~ 306 (812)
T PRK11664 227 RVQEQLASRVASDVLLCPLYGALSLAEQQKAILPAPAGRRKVVLATNIAETSLTIEGIRLVVDSGLERVARFDPKTGLTR 306 (812)
T ss_pred HHHHHHHHhccCCceEEEeeCCCCHHHHHHHhccccCCCeEEEEecchHHhcccccCceEEEECCCcccccccccCCcce
Confidence 99999976 6888889999999999999999999999999999 699999999999998754
Q ss_pred --------cccccccccccCCcc
Q psy437 159 --------PDYLPPILDLRLGRE 173 (184)
Q Consensus 159 --------e~y~~~i~~~~~~r~ 173 (184)
.+|.||. +|+||-
T Consensus 307 L~~~~iSkasa~QR~--GRaGR~ 327 (812)
T PRK11664 307 LVTQRISQASMTQRA--GRAGRL 327 (812)
T ss_pred eEEEeechhhhhhhc--cccCCC
Confidence 4799998 588885
No 127
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=99.13 E-value=1.1e-09 Score=99.44 Aligned_cols=138 Identities=12% Similarity=0.016 Sum_probs=100.7
Q ss_pred CCCcEEEEeccHHHHHHHHHHHHhC--------CCeeEEecCCCCHHHH-----HHHHHH-HhccCceEEEEEeecccHH
Q psy437 33 SGQSGIVYCLTRKECDSVAAALAQE--------RINAISYHAGLADKLR-----NEVQMK-WISNKVHVGHWTVVSKECD 98 (184)
Q Consensus 33 ~~~~~IIf~~tr~~~e~la~~L~~~--------gi~~~~~hg~l~~~~R-----~~~~~~-f~~g~~~vlVaT~tr~~~e 98 (184)
+..+.|++..|-.. +.+.+.|... .+++..++-.....++ ...+.. +.....++||++++.++++
T Consensus 145 ~dlqlIlmSATl~~-~~l~~~l~~~~vI~~~gr~~pVe~~y~~~~~~~~~~~~v~~~l~~~l~~~~g~iLVFlpg~~eI~ 223 (819)
T TIGR01970 145 EDLKILAMSATLDG-ERLSSLLPDAPVVESEGRSFPVEIRYLPLRGDQRLEDAVSRAVEHALASETGSILVFLPGQAEIR 223 (819)
T ss_pred CCceEEEEeCCCCH-HHHHHHcCCCcEEEecCcceeeeeEEeecchhhhHHHHHHHHHHHHHHhcCCcEEEEECCHHHHH
Confidence 34567888888664 3456665321 1233333333322222 122222 2333467999999999999
Q ss_pred HHHHHHHh---cCCcEEEeeCCCChHHHHHHHHHhhCCCceEEEE-------EecCCccEEEecCCCCCc----------
Q psy437 99 SVAAALAQ---ERINAISYHAGLADKLRNEVQMKWISNKVHLYNV-------WKIQWKRIIWIHSLVLIK---------- 158 (184)
Q Consensus 99 ~~a~gL~~---~gi~~~vih~~~p~~~r~~~~~~f~~~~~~v~va-------~D~~~vr~v~~~~~p~~~---------- 158 (184)
.++..|.. .++.+..+|+++|++.+..+.+.|++|+.+|+++ +|+|+|++||++++|+..
T Consensus 224 ~l~~~L~~~~~~~~~v~pLHg~L~~~eq~~~~~~~~~G~rkVlVATnIAErgItIp~V~~VID~Gl~r~~~yd~~~g~~~ 303 (819)
T TIGR01970 224 RVQEQLAERLDSDVLICPLYGELSLAAQDRAIKPDPQGRRKVVLATNIAETSLTIEGIRVVIDSGLARVARFDPKTGITR 303 (819)
T ss_pred HHHHHHHhhcCCCcEEEEecCCCCHHHHHHHHhhcccCCeEEEEecchHhhcccccCceEEEEcCcccccccccccCCce
Confidence 99999976 5888889999999999999999999999999999 699999999999999754
Q ss_pred --------cccccccccccCCcc
Q psy437 159 --------PDYLPPILDLRLGRE 173 (184)
Q Consensus 159 --------e~y~~~i~~~~~~r~ 173 (184)
.+|.||. +|+||.
T Consensus 304 L~~~~iSkasa~QR~--GRAGR~ 324 (819)
T TIGR01970 304 LETVRISQASATQRA--GRAGRL 324 (819)
T ss_pred eeEEEECHHHHHhhh--hhcCCC
Confidence 2478998 588885
No 128
>PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins. It may be that this is not an autonomously folding unit, but an integral part of the helicase. The eukaryotic translation initiation factor 4A (eIF4A) is a member of the DEA(D/H)-box RNA helicase family This is a diverse group of proteins that couples an ATPase activity to RNA binding and unwinding. The structure of the carboxyl-terminal domain of eIF4A has been determined to 1.75 A resolution; it has a parallel alpha-beta topology that superimposes, with minor variations, on the structures and conserved motifs of the equivalent domain in other, distantly related helicases [].; GO: 0003676 nucleic acid binding, 0004386 helicase activity, 0005524 ATP binding; PDB: 2Z83_A 2JGN_C 2I4I_A 2BMF_A 2BHR_B 1WP9_E 2WAX_C 2WAY_C 3JUX_A 3DIN_B ....
Probab=99.13 E-value=9.3e-11 Score=76.35 Aligned_cols=69 Identities=19% Similarity=0.227 Sum_probs=64.7
Q ss_pred HHHhcCCcEEEeeCCCChHHHHHHHHHhhCCCceEEEE-------EecCCccEEEecCCCCCccccccccccccCCcc
Q psy437 103 ALAQERINAISYHAGLADKLRNEVQMKWISNKVHLYNV-------WKIQWKRIIWIHSLVLIKPDYLPPILDLRLGRE 173 (184)
Q Consensus 103 gL~~~gi~~~vih~~~p~~~r~~~~~~f~~~~~~v~va-------~D~~~vr~v~~~~~p~~~e~y~~~i~~~~~~r~ 173 (184)
.|...|+++..+|+++|+..|..+.+.|.++...++++ +|.|++++|+++++|.+...|.|.+ +|+||.
T Consensus 2 ~L~~~~~~~~~i~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gid~~~~~~vi~~~~~~~~~~~~Q~~--GR~~R~ 77 (78)
T PF00271_consen 2 FLEKKGIKVAIIHGDMSQKERQEILKKFNSGEIRVLIATDILGEGIDLPDASHVIFYDPPWSPEEYIQRI--GRAGRI 77 (78)
T ss_dssp HHHHTTSSEEEESTTSHHHHHHHHHHHHHTTSSSEEEESCGGTTSSTSTTESEEEESSSESSHHHHHHHH--TTSSTT
T ss_pred ChHHCCCcEEEEECCCCHHHHHHHHHHhhccCceEEEeeccccccccccccccccccccCCCHHHHHHHh--hcCCCC
Confidence 57889999999999999999999999999999999999 5999999999999999999999999 477774
No 129
>TIGR00603 rad25 DNA repair helicase rad25. All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.09 E-value=5.9e-10 Score=99.48 Aligned_cols=102 Identities=16% Similarity=0.066 Sum_probs=85.8
Q ss_pred ChHHHHHHHHHhh-cCCCcEEEEeccHHHHHHHHHHHHhCCCeeEEecCCCCHHHHHHHHHHHhcc-CceEEEEEeeccc
Q psy437 19 NVLKEVISLIKAK-YSGQSGIVYCLTRKECDSVAAALAQERINAISYHAGLADKLRNEVQMKWISN-KVHVGHWTVVSKE 96 (184)
Q Consensus 19 ~k~~~L~~~l~~~-~~~~~~IIf~~tr~~~e~la~~L~~~gi~~~~~hg~l~~~~R~~~~~~f~~g-~~~vlVaT~tr~~ 96 (184)
.|+..+..+++.+ ..+.++||||.+...++.++..|. +.++||++++.+|.+++++|++| .+++||+|.
T Consensus 480 ~K~~~~~~Li~~he~~g~kiLVF~~~~~~l~~~a~~L~-----~~~I~G~ts~~ER~~il~~Fr~~~~i~vLv~Sk---- 550 (732)
T TIGR00603 480 NKFRACQFLIRFHEQRGDKIIVFSDNVFALKEYAIKLG-----KPFIYGPTSQQERMQILQNFQHNPKVNTIFLSK---- 550 (732)
T ss_pred HHHHHHHHHHHHHhhcCCeEEEEeCCHHHHHHHHHHcC-----CceEECCCCHHHHHHHHHHHHhCCCccEEEEec----
Confidence 4666666666432 256789999999999999998873 46689999999999999999975 789999998
Q ss_pred HHHHHHHHHhcCCcEEEeeCCCC-hHHHHHHHHHhhC
Q psy437 97 CDSVAAALAQERINAISYHAGLA-DKLRNEVQMKWIS 132 (184)
Q Consensus 97 ~e~~a~gL~~~gi~~~vih~~~p-~~~r~~~~~~f~~ 132 (184)
...+|+|.++++ ++|+++.| .+.+.|+||.+|-
T Consensus 551 --VgdeGIDlP~a~-vvI~~s~~~gS~~q~iQRlGRi 584 (732)
T TIGR00603 551 --VGDTSIDLPEAN-VLIQISSHYGSRRQEAQRLGRI 584 (732)
T ss_pred --ccccccCCCCCC-EEEEeCCCCCCHHHHHHHhccc
Confidence 778999999999 99999887 6999999999653
No 130
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=99.09 E-value=4.5e-10 Score=104.99 Aligned_cols=94 Identities=16% Similarity=0.108 Sum_probs=80.9
Q ss_pred CCCcEEEEeccHHHHHHHHHHHHhCCCe---eEEecCCCCHHHHHHHHHHHhccCceEEEEEeecccHHHHHHHHHhcCC
Q psy437 33 SGQSGIVYCLTRKECDSVAAALAQERIN---AISYHAGLADKLRNEVQMKWISNKVHVGHWTVVSKECDSVAAALAQERI 109 (184)
Q Consensus 33 ~~~~~IIf~~tr~~~e~la~~L~~~gi~---~~~~hg~l~~~~R~~~~~~f~~g~~~vlVaT~tr~~~e~~a~gL~~~gi 109 (184)
..+.+||||++..+++.+++.|.+.+++ +..+||+|++++|..+++. .|..+|||||+ .+++||+++||
T Consensus 285 ~~GdILVFLpg~~EIe~lae~L~~~~~~~~~VlpLhg~Ls~~eQ~~Vf~~--~g~rkIIVATN------IAEtSITIpgI 356 (1294)
T PRK11131 285 GPGDILIFMSGEREIRDTADALNKLNLRHTEILPLYARLSNSEQNRVFQS--HSGRRIVLATN------VAETSLTVPGI 356 (1294)
T ss_pred CCCCEEEEcCCHHHHHHHHHHHHhcCCCcceEeecccCCCHHHHHHHhcc--cCCeeEEEecc------HHhhccccCcc
Confidence 4577999999999999999999987765 6689999999999999886 57889999999 99999999999
Q ss_pred cEEEeeCCC---------------C---hHHHHHHHHHhhCCCc
Q psy437 110 NAISYHAGL---------------A---DKLRNEVQMKWISNKV 135 (184)
Q Consensus 110 ~~~vih~~~---------------p---~~~r~~~~~~f~~~~~ 135 (184)
+ +||++|+ | -+..+|.||.++.|..
T Consensus 357 ~-yVID~Gl~k~~~Yd~~~~~~~Lp~~~iSkasa~QRaGRAGR~ 399 (1294)
T PRK11131 357 K-YVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRV 399 (1294)
T ss_pred e-EEEECCCccccccccccCcccCCeeecCHhhHhhhccccCCC
Confidence 9 9999984 3 3456788888777654
No 131
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=99.08 E-value=6.3e-10 Score=98.23 Aligned_cols=86 Identities=12% Similarity=-0.119 Sum_probs=72.4
Q ss_pred CceEEEEEeecccHHHHHHHHHhcCCcEEEeeCCCChHHHHHHHHHhhCCCceEEEE-------EecC---Ccc-----E
Q psy437 84 KVHVGHWTVVSKECDSVAAALAQERINAISYHAGLADKLRNEVQMKWISNKVHLYNV-------WKIQ---WKR-----I 148 (184)
Q Consensus 84 ~~~vlVaT~tr~~~e~~a~gL~~~gi~~~vih~~~p~~~r~~~~~~f~~~~~~v~va-------~D~~---~vr-----~ 148 (184)
.-++||+|.+..+++.++..|...|+++.++|++.++..+..+...+.. ..|+|| .|++ +|+ +
T Consensus 473 ~~pvLIft~t~~~se~L~~~L~~~gi~~~~Lhg~~~~rE~~ii~~ag~~--g~VlVATdmAgRGtDI~l~~~V~~~GGLh 550 (656)
T PRK12898 473 GRPVLVGTRSVAASERLSALLREAGLPHQVLNAKQDAEEAAIVARAGQR--GRITVATNMAGRGTDIKLEPGVAARGGLH 550 (656)
T ss_pred CCCEEEEeCcHHHHHHHHHHHHHCCCCEEEeeCCcHHHHHHHHHHcCCC--CcEEEEccchhcccCcCCccchhhcCCCE
Confidence 3579999999999999999999999999999999877776666655544 458887 5998 777 9
Q ss_pred EEecCCCCCccccccccccccCCcc
Q psy437 149 IWIHSLVLIKPDYLPPILDLRLGRE 173 (184)
Q Consensus 149 v~~~~~p~~~e~y~~~i~~~~~~r~ 173 (184)
||++++|.+.+.|.|+++ |.||.
T Consensus 551 VI~~d~P~s~r~y~hr~G--RTGRq 573 (656)
T PRK12898 551 VILTERHDSARIDRQLAG--RCGRQ 573 (656)
T ss_pred EEEcCCCCCHHHHHHhcc--cccCC
Confidence 999999999999999996 55553
No 132
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process
Probab=99.08 E-value=1.5e-09 Score=76.65 Aligned_cols=89 Identities=19% Similarity=0.178 Sum_probs=81.7
Q ss_pred CceEEEEEeecccHHHHHHHHHhcCCcEEEeeCCCChHHHHHHHHHhhCCCceEEEE-------EecCCccEEEecCCCC
Q psy437 84 KVHVGHWTVVSKECDSVAAALAQERINAISYHAGLADKLRNEVQMKWISNKVHLYNV-------WKIQWKRIIWIHSLVL 156 (184)
Q Consensus 84 ~~~vlVaT~tr~~~e~~a~gL~~~gi~~~vih~~~p~~~r~~~~~~f~~~~~~v~va-------~D~~~vr~v~~~~~p~ 156 (184)
..++||+|++...++.++..|...+..+..+|++++...+..+...|..+...++++ +|.|....|+++++|.
T Consensus 28 ~~~~lvf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ili~t~~~~~G~d~~~~~~vi~~~~~~ 107 (131)
T cd00079 28 GGKVLIFCPSKKMLDELAELLRKPGIKVAALHGDGSQEEREEVLKDFREGEIVVLVATDVIARGIDLPNVSVVINYDLPW 107 (131)
T ss_pred CCcEEEEeCcHHHHHHHHHHHHhcCCcEEEEECCCCHHHHHHHHHHHHcCCCcEEEEcChhhcCcChhhCCEEEEeCCCC
Confidence 457999999999999999999989999899999999999999999999999888887 5999999999999999
Q ss_pred CccccccccccccCCccc
Q psy437 157 IKPDYLPPILDLRLGRED 174 (184)
Q Consensus 157 ~~e~y~~~i~~~~~~r~~ 174 (184)
+...+.|.++ |+||.+
T Consensus 108 ~~~~~~Q~~G--R~~R~~ 123 (131)
T cd00079 108 SPSSYLQRIG--RAGRAG 123 (131)
T ss_pred CHHHheeccc--ccccCC
Confidence 9999999995 666654
No 133
>KOG0352|consensus
Probab=99.07 E-value=5.8e-10 Score=92.82 Aligned_cols=108 Identities=26% Similarity=0.346 Sum_probs=98.1
Q ss_pred CCCcEEEEeccHHHHHHHHHHHHhCCCeeEEecCCCCHHHHHHHHHHHhccCceE-------------------------
Q psy437 33 SGQSGIVYCLTRKECDSVAAALAQERINAISYHAGLADKLRNEVQMKWISNKVHV------------------------- 87 (184)
Q Consensus 33 ~~~~~IIf~~tr~~~e~la~~L~~~gi~~~~~hg~l~~~~R~~~~~~f~~g~~~v------------------------- 87 (184)
..+-+|||.+-......-...|....+++..+.+.|+..+|.+++-.+...+.++
T Consensus 60 ~~gITIV~SPLiALIkDQiDHL~~LKVp~~SLNSKlSt~ER~ri~~DL~~ekp~~K~LYITPE~AAt~~FQ~lLn~L~~r 139 (641)
T KOG0352|consen 60 HGGITIVISPLIALIKDQIDHLKRLKVPCESLNSKLSTVERSRIMGDLAKEKPTIKMLYITPEGAATDGFQKLLNGLANR 139 (641)
T ss_pred hCCeEEEehHHHHHHHHHHHHHHhcCCchhHhcchhhHHHHHHHHHHHHhcCCceeEEEEchhhhhhhhHHHHHHHHhhh
Confidence 3457899999999888888888888999999999999999999988887655433
Q ss_pred --------------------------------------------------------------------------------
Q psy437 88 -------------------------------------------------------------------------------- 87 (184)
Q Consensus 88 -------------------------------------------------------------------------------- 87 (184)
T Consensus 140 ~~L~Y~vVDEAHCVSQWGHDFRPDYL~LG~LRS~~~~vpwvALTATA~~~VqEDi~~qL~L~~PVAiFkTP~FR~NLFYD 219 (641)
T KOG0352|consen 140 DVLRYIVVDEAHCVSQWGHDFRPDYLTLGSLRSVCPGVPWVALTATANAKVQEDIAFQLKLRNPVAIFKTPTFRDNLFYD 219 (641)
T ss_pred ceeeeEEechhhhHhhhccccCcchhhhhhHHhhCCCCceEEeecccChhHHHHHHHHHhhcCcHHhccCcchhhhhhHH
Confidence
Q ss_pred ---------------------------------------EEEEeecccHHHHHHHHHhcCCcEEEeeCCCChHHHHHHHH
Q psy437 88 ---------------------------------------GHWTVVSKECDSVAAALAQERINAISYHAGLADKLRNEVQM 128 (184)
Q Consensus 88 ---------------------------------------lVaT~tr~~~e~~a~gL~~~gi~~~vih~~~p~~~r~~~~~ 128 (184)
||||.||..||.+|-+|.+.||.+.+||+|+..+.|+.+|+
T Consensus 220 ~~~K~~I~D~~~~LaDF~~~~LG~~~~~~~~~K~~~GCGIVYCRTR~~cEq~AI~l~~~Gi~A~AYHAGLK~~ERTeVQe 299 (641)
T KOG0352|consen 220 NHMKSFITDCLTVLADFSSSNLGKHEKASQNKKTFTGCGIVYCRTRNECEQVAIMLEIAGIPAMAYHAGLKKKERTEVQE 299 (641)
T ss_pred HHHHHHhhhHhHhHHHHHHHhcCChhhhhcCCCCcCcceEEEeccHHHHHHHHHHhhhcCcchHHHhcccccchhHHHHH
Confidence 89999999999999999999999999999999999999999
Q ss_pred HhhCCCceEEEE
Q psy437 129 KWISNKVHLYNV 140 (184)
Q Consensus 129 ~f~~~~~~v~va 140 (184)
.|++++++|++|
T Consensus 300 ~WM~~~~PvI~A 311 (641)
T KOG0352|consen 300 KWMNNEIPVIAA 311 (641)
T ss_pred HHhcCCCCEEEE
Confidence 999999999998
No 134
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=99.06 E-value=1e-08 Score=85.15 Aligned_cols=86 Identities=10% Similarity=0.069 Sum_probs=72.9
Q ss_pred cCceEEEEEeecccHHHHHHHHHhcCC--cEEEeeCCCChHHHHHH----HHHhhCCCceEEEE-------EecCCccEE
Q psy437 83 NKVHVGHWTVVSKECDSVAAALAQERI--NAISYHAGLADKLRNEV----QMKWISNKVHLYNV-------WKIQWKRII 149 (184)
Q Consensus 83 g~~~vlVaT~tr~~~e~~a~gL~~~gi--~~~vih~~~p~~~r~~~----~~~f~~~~~~v~va-------~D~~~vr~v 149 (184)
...++||++++++.|+.++..|...+. .+..+|+++++..|... .+.|++++..++|+ +|++ +..|
T Consensus 221 ~~~~~lVf~~t~~~~~~~~~~L~~~~~~~~~~~~h~~~~~~~r~~~~~~~~~~f~~~~~~ilvaT~~~~~GiDi~-~~~v 299 (358)
T TIGR01587 221 KGGKIAIIVNTVDRAQEFYQQLKENAPEEEIMLLHSRFTEKDRAKKEAELLEEMKKNEKFVIVATQVIEASLDIS-ADVM 299 (358)
T ss_pred CCCeEEEEECCHHHHHHHHHHHHhhcCCCeEEEEECCCCHHHHHHHHHHHHHHhcCCCCeEEEECcchhceeccC-CCEE
Confidence 345899999999999999999977665 47999999999999774 67899999999999 6996 7888
Q ss_pred EecCCCCCccccccccccccCCcc
Q psy437 150 WIHSLVLIKPDYLPPILDLRLGRE 173 (184)
Q Consensus 150 ~~~~~p~~~e~y~~~i~~~~~~r~ 173 (184)
+++..| .++|+|+++ |+||.
T Consensus 300 i~~~~~--~~~~iqr~G--R~gR~ 319 (358)
T TIGR01587 300 ITELAP--IDSLIQRLG--RLHRY 319 (358)
T ss_pred EEcCCC--HHHHHHHhc--cccCC
Confidence 888776 789999996 55554
No 135
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only]
Probab=99.02 E-value=9.5e-10 Score=94.42 Aligned_cols=85 Identities=25% Similarity=0.389 Sum_probs=72.6
Q ss_pred cChHHHHHHHHHhhc-------CCCcEEEEeccHHHHHHHHHHHHhCCCeeEEecCCCCHHHHHHHHHHHhccCceEEEE
Q psy437 18 KNVLKEVISLIKAKY-------SGQSGIVYCLTRKECDSVAAALAQERINAISYHAGLADKLRNEVQMKWISNKVHVGHW 90 (184)
Q Consensus 18 ~~k~~~L~~~l~~~~-------~~~~~IIf~~tr~~~e~la~~L~~~gi~~~~~hg~l~~~~R~~~~~~f~~g~~~vlVa 90 (184)
.+|.+.+..+.+..+ -.+++|||++||+.|..+|..|...|+++..||+||+..+|..+...|.+++..++|.
T Consensus 417 ~eK~~ii~~L~k~E~~~~sskg~rGQtIVFT~SRrr~h~lA~~L~~kG~~a~pYHaGL~y~eRk~vE~~F~~q~l~~VVT 496 (830)
T COG1202 417 SEKWDIIARLVKREFSTESSKGYRGQTIVFTYSRRRCHELADALTGKGLKAAPYHAGLPYKERKSVERAFAAQELAAVVT 496 (830)
T ss_pred hHHHHHHHHHHHHHHhhhhccCcCCceEEEecchhhHHHHHHHhhcCCcccccccCCCcHHHHHHHHHHHhcCCcceEee
Confidence 357777777665432 3568999999999999999999999999999999999999999999999999999999
Q ss_pred EeecccHHHHHHHHHhcC
Q psy437 91 TVVSKECDSVAAALAQER 108 (184)
Q Consensus 91 T~tr~~~e~~a~gL~~~g 108 (184)
|- .+|.|.|.|.
T Consensus 497 TA------AL~AGVDFPA 508 (830)
T COG1202 497 TA------ALAAGVDFPA 508 (830)
T ss_pred hh------hhhcCCCCch
Confidence 99 5666666554
No 136
>smart00490 HELICc helicase superfamily c-terminal domain.
Probab=99.01 E-value=1.6e-09 Score=70.21 Aligned_cols=78 Identities=19% Similarity=0.144 Sum_probs=64.8
Q ss_pred HHHHHHHhCCCeeEEecCCCCHHHHHHHHHHHhccCceEEEEEeecccHHHHHHHHHhcCCcEEEeeCCCChHHHHHHHH
Q psy437 49 SVAAALAQERINAISYHAGLADKLRNEVQMKWISNKVHVGHWTVVSKECDSVAAALAQERINAISYHAGLADKLRNEVQM 128 (184)
Q Consensus 49 ~la~~L~~~gi~~~~~hg~l~~~~R~~~~~~f~~g~~~vlVaT~tr~~~e~~a~gL~~~gi~~~vih~~~p~~~r~~~~~ 128 (184)
.+++.|...++++..+||++++++|..+++.|.++...+||+|+ .++.|++.+.++ .|+.++.|.+...+.|+
T Consensus 2 ~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~------~~~~Gi~~~~~~-~vi~~~~~~~~~~~~Q~ 74 (82)
T smart00490 2 ELAELLKELGIKVARLHGGLSQEEREEILEKFNNGKIKVLVATD------VAERGLDLPGVD-LVIIYDLPWSPASYIQR 74 (82)
T ss_pred HHHHHHHHCCCeEEEEECCCCHHHHHHHHHHHHcCCCeEEEECC------hhhCCcChhcCC-EEEEeCCCCCHHHHHHh
Confidence 56778888899999999999999999999999999999999999 667787777777 67777777777777776
Q ss_pred HhhCC
Q psy437 129 KWISN 133 (184)
Q Consensus 129 ~f~~~ 133 (184)
..+.+
T Consensus 75 ~gR~~ 79 (82)
T smart00490 75 IGRAG 79 (82)
T ss_pred hcccc
Confidence 65543
No 137
>KOG0346|consensus
Probab=99.01 E-value=1.3e-09 Score=90.90 Aligned_cols=73 Identities=10% Similarity=0.067 Sum_probs=62.6
Q ss_pred cHHHHHHHHHhcCCcEEEeeCCCChHHHHHHHHHhhCCCceEEEE-----------------------------------
Q psy437 96 ECDSVAAALAQERINAISYHAGLADKLRNEVQMKWISNKVHLYNV----------------------------------- 140 (184)
Q Consensus 96 ~~e~~a~gL~~~gi~~~vih~~~p~~~r~~~~~~f~~~~~~v~va----------------------------------- 140 (184)
.|=++---|..-||..+|+|+.||...|-.+.++|-.|--++++|
T Consensus 280 r~YrLkLfLeqFGiksciLNseLP~NSR~Hii~QFNkG~YdivIAtD~s~~~~~~eee~kgk~~e~~~kndkkskkK~D~ 359 (569)
T KOG0346|consen 280 RCYRLKLFLEQFGIKSCILNSELPANSRCHIIEQFNKGLYDIVIATDDSADGDKLEEEVKGKSDEKNPKNDKKSKKKLDK 359 (569)
T ss_pred hhHHHHHHHHHhCcHhhhhcccccccchhhHHHHhhCcceeEEEEccCccchhhhhccccccccccCCCCccccccccCc
Confidence 344444456788999999999999999999999999999999988
Q ss_pred -------EecCCccEEEecCCCCCccccccccccc
Q psy437 141 -------WKIQWKRIIWIHSLVLIKPDYLPPILDL 168 (184)
Q Consensus 141 -------~D~~~vr~v~~~~~p~~~e~y~~~i~~~ 168 (184)
+|..+|..|+|||+|.+.++|+||++++
T Consensus 360 E~GVsRGIDF~~V~~VlNFD~P~t~~sYIHRvGRT 394 (569)
T KOG0346|consen 360 ESGVSRGIDFHHVSNVLNFDFPETVTSYIHRVGRT 394 (569)
T ss_pred hhchhccccchheeeeeecCCCCchHHHHHhcccc
Confidence 2566788999999999999999999753
No 138
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=99.00 E-value=2.1e-09 Score=96.81 Aligned_cols=89 Identities=12% Similarity=-0.113 Sum_probs=78.2
Q ss_pred cCceEEEEEeecccHHHHHHHHHhcCCcEEEeeCCCChHHHHHHHHHhhCCCceEEEE-------Eec---CCcc-----
Q psy437 83 NKVHVGHWTVVSKECDSVAAALAQERINAISYHAGLADKLRNEVQMKWISNKVHLYNV-------WKI---QWKR----- 147 (184)
Q Consensus 83 g~~~vlVaT~tr~~~e~~a~gL~~~gi~~~vih~~~p~~~r~~~~~~f~~~~~~v~va-------~D~---~~vr----- 147 (184)
...++||+|.+...++.++..|...|+++.++|+++++..+..+.+.+..| .|+|| .|+ |+|+
T Consensus 427 ~~~pvLIf~~t~~~se~l~~~L~~~gi~~~~L~~~~~~~e~~~i~~ag~~g--~VlIATdmAgRG~DI~l~~~V~~~GGL 504 (790)
T PRK09200 427 TGRPVLIGTGSIEQSETFSKLLDEAGIPHNLLNAKNAAKEAQIIAEAGQKG--AVTVATNMAGRGTDIKLGEGVHELGGL 504 (790)
T ss_pred cCCCEEEEeCcHHHHHHHHHHHHHCCCCEEEecCCccHHHHHHHHHcCCCC--eEEEEccchhcCcCCCcccccccccCc
Confidence 456899999999999999999999999999999999999998888888776 57777 599 7999
Q ss_pred EEEecCCCCCcccccccccc-ccCCcc
Q psy437 148 IIWIHSLVLIKPDYLPPILD-LRLGRE 173 (184)
Q Consensus 148 ~v~~~~~p~~~e~y~~~i~~-~~~~r~ 173 (184)
+||++++|.+.+.|.|++++ +|.|..
T Consensus 505 ~VI~~d~p~s~r~y~qr~GRtGR~G~~ 531 (790)
T PRK09200 505 AVIGTERMESRRVDLQLRGRSGRQGDP 531 (790)
T ss_pred EEEeccCCCCHHHHHHhhccccCCCCC
Confidence 99999999999999999965 355544
No 139
>PHA02558 uvsW UvsW helicase; Provisional
Probab=98.97 E-value=4.5e-09 Score=91.25 Aligned_cols=87 Identities=13% Similarity=-0.076 Sum_probs=77.0
Q ss_pred ceEEEEEeecccHHHHHHHHHhcCCcEEEeeCCCChHHHHHHHHHhhCCCceEEEE--------EecCCccEEEecCCCC
Q psy437 85 VHVGHWTVVSKECDSVAAALAQERINAISYHAGLADKLRNEVQMKWISNKVHLYNV--------WKIQWKRIIWIHSLVL 156 (184)
Q Consensus 85 ~~vlVaT~tr~~~e~~a~gL~~~gi~~~vih~~~p~~~r~~~~~~f~~~~~~v~va--------~D~~~vr~v~~~~~p~ 156 (184)
.+++|.+.....++.++..|...|+++.++|+++|++.|..+.+.|+.|+..++++ ||+|++..|++..+|+
T Consensus 345 ~~~lV~~~~~~h~~~L~~~L~~~g~~v~~i~G~~~~~eR~~i~~~~~~~~~~vLvaT~~~l~eG~Dip~ld~vIl~~p~~ 424 (501)
T PHA02558 345 ENTFVMFKYVEHGKPLYEMLKKVYDKVYYVSGEVDTEDRNEMKKIAEGGKGIIIVASYGVFSTGISIKNLHHVIFAHPSK 424 (501)
T ss_pred CCEEEEEEEHHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHHHhCCCCeEEEEEcceeccccccccccEEEEecCCc
Confidence 35666666677999999999999999999999999999999999999998888876 6999999999999999
Q ss_pred CccccccccccccCCcc
Q psy437 157 IKPDYLPPILDLRLGRE 173 (184)
Q Consensus 157 ~~e~y~~~i~~~~~~r~ 173 (184)
+...|+|+++ |.+|.
T Consensus 425 s~~~~~QriG--R~~R~ 439 (501)
T PHA02558 425 SKIIVLQSIG--RVLRK 439 (501)
T ss_pred chhhhhhhhh--ccccC
Confidence 9999999996 55553
No 140
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=98.97 E-value=3.7e-09 Score=99.17 Aligned_cols=94 Identities=16% Similarity=0.113 Sum_probs=79.6
Q ss_pred CCCcEEEEeccHHHHHHHHHHHHhCC---CeeEEecCCCCHHHHHHHHHHHhccCceEEEEEeecccHHHHHHHHHhcCC
Q psy437 33 SGQSGIVYCLTRKECDSVAAALAQER---INAISYHAGLADKLRNEVQMKWISNKVHVGHWTVVSKECDSVAAALAQERI 109 (184)
Q Consensus 33 ~~~~~IIf~~tr~~~e~la~~L~~~g---i~~~~~hg~l~~~~R~~~~~~f~~g~~~vlVaT~tr~~~e~~a~gL~~~gi 109 (184)
.++.+|||+++..+++.+++.|.+.+ +.+..+||+|++++|.++++.+ +..+|||||+ .++++|+++||
T Consensus 278 ~~GdILVFLpg~~EI~~l~~~L~~~~~~~~~VlpLhg~Ls~~eQ~~vf~~~--~~rkIVLATN------IAEtSLTIpgV 349 (1283)
T TIGR01967 278 GPGDILIFLPGEREIRDAAEILRKRNLRHTEILPLYARLSNKEQQRVFQPH--SGRRIVLATN------VAETSLTVPGI 349 (1283)
T ss_pred CCCCEEEeCCCHHHHHHHHHHHHhcCCCCcEEEeccCCCCHHHHHHHhCCC--CCceEEEecc------HHHhccccCCe
Confidence 45789999999999999999998764 4578899999999999886543 3468999999 88999999999
Q ss_pred cEEEeeCCCCh------------------HHHHHHHHHhhCCCc
Q psy437 110 NAISYHAGLAD------------------KLRNEVQMKWISNKV 135 (184)
Q Consensus 110 ~~~vih~~~p~------------------~~r~~~~~~f~~~~~ 135 (184)
+ +||+.|++. +..+|.||.++.|.+
T Consensus 350 ~-yVIDsGl~r~~~yd~~~~~~~L~~~~ISkasa~QRaGRAGR~ 392 (1283)
T TIGR01967 350 H-YVIDTGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRV 392 (1283)
T ss_pred e-EEEeCCCccccccccccCccccCCccCCHHHHHHHhhhhCCC
Confidence 9 999999765 456889998877653
No 141
>KOG0343|consensus
Probab=98.94 E-value=2.9e-08 Score=85.00 Aligned_cols=163 Identities=13% Similarity=0.162 Sum_probs=119.0
Q ss_pred CCCCCCeEEEEEEccChH------HHHHHHHHhhcCCCcEEEEeccHH-HHHHHHHHHHhCCCeeEEecCC---------
Q psy437 4 SFNRANLKYEILPKKNVL------KEVISLIKAKYSGQSGIVYCLTRK-ECDSVAAALAQERINAISYHAG--------- 67 (184)
Q Consensus 4 s~~R~Nl~y~v~~~~~k~------~~L~~~l~~~~~~~~~IIf~~tr~-~~e~la~~L~~~gi~~~~~hg~--------- 67 (184)
+|+-+||...|....+++ ..|-.+|....+..+++.|..|.. .+..++.. .........+|..
T Consensus 210 ~f~t~~lQmLvLDEADR~LDMGFk~tL~~Ii~~lP~~RQTLLFSATqt~svkdLaRL-sL~dP~~vsvhe~a~~atP~~L 288 (758)
T KOG0343|consen 210 NFSTSNLQMLVLDEADRMLDMGFKKTLNAIIENLPKKRQTLLFSATQTKSVKDLARL-SLKDPVYVSVHENAVAATPSNL 288 (758)
T ss_pred CCCCCcceEEEeccHHHHHHHhHHHHHHHHHHhCChhheeeeeecccchhHHHHHHh-hcCCCcEEEEeccccccChhhh
Confidence 456677777766554321 223333433334568999977654 34444432 2223334445521
Q ss_pred ------CCHHHHHHHHHHHhcc--CceEEEEEeecccHHHHHHHHH--hcCCcEEEeeCCCChHHHHHHHHHhhCCCceE
Q psy437 68 ------LADKLRNEVQMKWISN--KVHVGHWTVVSKECDSVAAALA--QERINAISYHAGLADKLRNEVQMKWISNKVHL 137 (184)
Q Consensus 68 ------l~~~~R~~~~~~f~~g--~~~vlVaT~tr~~~e~~a~gL~--~~gi~~~vih~~~p~~~r~~~~~~f~~~~~~v 137 (184)
+.-+++..++-.|... +.++||+.++.+.+.-+..... .+|++...+||.|.|..|..+-..|.+.+--|
T Consensus 289 ~Q~y~~v~l~~Ki~~L~sFI~shlk~K~iVF~SscKqvkf~~e~F~rlrpg~~l~~L~G~~~Q~~R~ev~~~F~~~~~~v 368 (758)
T KOG0343|consen 289 QQSYVIVPLEDKIDMLWSFIKSHLKKKSIVFLSSCKQVKFLYEAFCRLRPGIPLLALHGTMSQKKRIEVYKKFVRKRAVV 368 (758)
T ss_pred hheEEEEehhhHHHHHHHHHHhccccceEEEEehhhHHHHHHHHHHhcCCCCceeeeccchhHHHHHHHHHHHHHhcceE
Confidence 2236778889999875 4578999999999888887775 58999999999999999999999999888777
Q ss_pred EEE-------EecCCccEEEecCCCCCcccccccccc
Q psy437 138 YNV-------WKIQWKRIIWIHSLVLIKPDYLPPILD 167 (184)
Q Consensus 138 ~va-------~D~~~vr~v~~~~~p~~~e~y~~~i~~ 167 (184)
+.| +|.|-|.||+.+|-|.+.+.|+||+++
T Consensus 369 LF~TDv~aRGLDFpaVdwViQ~DCPedv~tYIHRvGR 405 (758)
T KOG0343|consen 369 LFCTDVAARGLDFPAVDWVIQVDCPEDVDTYIHRVGR 405 (758)
T ss_pred EEeehhhhccCCCcccceEEEecCchhHHHHHHHhhh
Confidence 777 699999999999999999999999964
No 142
>KOG0349|consensus
Probab=98.92 E-value=4.3e-09 Score=87.91 Aligned_cols=87 Identities=16% Similarity=0.180 Sum_probs=78.8
Q ss_pred ceEEEEEeecccHHHHHHHHHhcC---CcEEEeeCCCChHHHHHHHHHhhCCCceEEEE-------EecCCccEEEecCC
Q psy437 85 VHVGHWTVVSKECDSVAAALAQER---INAISYHAGLADKLRNEVQMKWISNKVHLYNV-------WKIQWKRIIWIHSL 154 (184)
Q Consensus 85 ~~vlVaT~tr~~~e~~a~gL~~~g---i~~~vih~~~p~~~r~~~~~~f~~~~~~v~va-------~D~~~vr~v~~~~~ 154 (184)
-+.|++|.|+.+|+.+-+.|...| .+++.+|+|..++.|..-.+.|+.++++.+++ +|+..+.++||..+
T Consensus 506 dkaiifcrtk~dcDnLer~~~qkgg~~~scvclhgDrkP~Erk~nle~Fkk~dvkflictdvaargldi~g~p~~invtl 585 (725)
T KOG0349|consen 506 DKAIIFCRTKQDCDNLERMMNQKGGKHYSCVCLHGDRKPDERKANLESFKKFDVKFLICTDVAARGLDITGLPFMINVTL 585 (725)
T ss_pred CceEEEEeccccchHHHHHHHHcCCccceeEEEecCCChhHHHHHHHhhhhcCeEEEEEehhhhccccccCCceEEEEec
Confidence 367999999999999999997665 57888999999999999999999999999988 69999999999999
Q ss_pred CCCccccccccccccCCcc
Q psy437 155 VLIKPDYLPPILDLRLGRE 173 (184)
Q Consensus 155 p~~~e~y~~~i~~~~~~r~ 173 (184)
|....+|+|||+ |+||.
T Consensus 586 pd~k~nyvhrig--rvgra 602 (725)
T KOG0349|consen 586 PDDKTNYVHRIG--RVGRA 602 (725)
T ss_pred Ccccchhhhhhh--ccchh
Confidence 999999999995 66664
No 143
>PRK00254 ski2-like helicase; Provisional
Probab=98.92 E-value=3.2e-08 Score=89.44 Aligned_cols=141 Identities=14% Similarity=0.096 Sum_probs=97.1
Q ss_pred CCCcEEEEeccHHHHHHHHHHHHhCCC-------ee---EEecC------CCC---HHHHHHHHHHHhccCceEEEEEee
Q psy437 33 SGQSGIVYCLTRKECDSVAAALAQERI-------NA---ISYHA------GLA---DKLRNEVQMKWISNKVHVGHWTVV 93 (184)
Q Consensus 33 ~~~~~IIf~~tr~~~e~la~~L~~~gi-------~~---~~~hg------~l~---~~~R~~~~~~f~~g~~~vlVaT~t 93 (184)
...+.|.+..|-..++.++++|....+ +. ..+++ +.. ...-...+.+......++||+|++
T Consensus 168 ~~~qiI~lSATl~n~~~la~wl~~~~~~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~vLVF~~s 247 (720)
T PRK00254 168 GRAQILGLSATVGNAEELAEWLNAELVVSDWRPVKLRKGVFYQGFLFWEDGKIERFPNSWESLVYDAVKKGKGALVFVNT 247 (720)
T ss_pred cCCcEEEEEccCCCHHHHHHHhCCccccCCCCCCcceeeEecCCeeeccCcchhcchHHHHHHHHHHHHhCCCEEEEEcC
Confidence 345667788888778899999864211 11 11111 100 011112233334445689999999
Q ss_pred cccHHHHHHHHHhc---------------------------------CCcEEEeeCCCChHHHHHHHHHhhCCCceEEEE
Q psy437 94 SKECDSVAAALAQE---------------------------------RINAISYHAGLADKLRNEVQMKWISNKVHLYNV 140 (184)
Q Consensus 94 r~~~e~~a~gL~~~---------------------------------gi~~~vih~~~p~~~r~~~~~~f~~~~~~v~va 140 (184)
|+.|+.+|..|... ...+..+|+|+++..|..+.+.|++|.++|+||
T Consensus 248 r~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~~hHagl~~~eR~~ve~~F~~G~i~VLva 327 (720)
T PRK00254 248 RRSAEKEALELAKKIKRFLTKPELRALKELADSLEENPTNEKLKKALRGGVAFHHAGLGRTERVLIEDAFREGLIKVITA 327 (720)
T ss_pred hHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCcHHHHHHHhhCEEEeCCCCCHHHHHHHHHHHHCCCCeEEEe
Confidence 99999988777321 112588999999999999999999999999999
Q ss_pred -------EecCCccEEEe-------cCCCC-CccccccccccccCCcccc
Q psy437 141 -------WKIQWKRIIWI-------HSLVL-IKPDYLPPILDLRLGREDI 175 (184)
Q Consensus 141 -------~D~~~vr~v~~-------~~~p~-~~e~y~~~i~~~~~~r~~~ 175 (184)
+|+|.++.||. ++.|. ...+|+|++ +|+||.+.
T Consensus 328 T~tLa~Gvnipa~~vVI~~~~~~~~~~~~~~~~~~~~Qm~--GRAGR~~~ 375 (720)
T PRK00254 328 TPTLSAGINLPAFRVIIRDTKRYSNFGWEDIPVLEIQQMM--GRAGRPKY 375 (720)
T ss_pred CcHHhhhcCCCceEEEECCceEcCCCCceeCCHHHHHHhh--hccCCCCc
Confidence 59999999994 55554 344789998 58888643
No 144
>PRK01172 ski2-like helicase; Provisional
Probab=98.90 E-value=2.7e-08 Score=89.30 Aligned_cols=151 Identities=15% Similarity=0.117 Sum_probs=100.1
Q ss_pred HHHHHHHHhhcCCCcEEEEeccHHHHHHHHHHHHhCCC---------eeEEecCC------C--CHHHHHHHHHHHhccC
Q psy437 22 KEVISLIKAKYSGQSGIVYCLTRKECDSVAAALAQERI---------NAISYHAG------L--ADKLRNEVQMKWISNK 84 (184)
Q Consensus 22 ~~L~~~l~~~~~~~~~IIf~~tr~~~e~la~~L~~~gi---------~~~~~hg~------l--~~~~R~~~~~~f~~g~ 84 (184)
+.+...++...+..+.|.+..|-..++.++++|...-+ ....++.+ . ....-...+.......
T Consensus 157 e~ll~~~~~~~~~~riI~lSATl~n~~~la~wl~~~~~~~~~r~vpl~~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 236 (674)
T PRK01172 157 ETVLSSARYVNPDARILALSATVSNANELAQWLNASLIKSNFRPVPLKLGILYRKRLILDGYERSQVDINSLIKETVNDG 236 (674)
T ss_pred HHHHHHHHhcCcCCcEEEEeCccCCHHHHHHHhCCCccCCCCCCCCeEEEEEecCeeeecccccccccHHHHHHHHHhCC
Confidence 34444443222345677788998888999998853211 11112111 0 0111122333333445
Q ss_pred ceEEEEEeecccHHHHHHHHHhc-----C--------------------CcEEEeeCCCChHHHHHHHHHhhCCCceEEE
Q psy437 85 VHVGHWTVVSKECDSVAAALAQE-----R--------------------INAISYHAGLADKLRNEVQMKWISNKVHLYN 139 (184)
Q Consensus 85 ~~vlVaT~tr~~~e~~a~gL~~~-----g--------------------i~~~vih~~~p~~~r~~~~~~f~~~~~~v~v 139 (184)
.++||++++++.|+.+|..|... . ..+..+|+++|+..|..+.+.|++|.+.|+|
T Consensus 237 ~~vLVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~~~hagl~~~eR~~ve~~f~~g~i~VLv 316 (674)
T PRK01172 237 GQVLVFVSSRKNAEDYAEMLIQHFPEFNDFKVSSENNNVYDDSLNEMLPHGVAFHHAGLSNEQRRFIEEMFRNRYIKVIV 316 (674)
T ss_pred CcEEEEeccHHHHHHHHHHHHHhhhhcccccccccccccccHHHHHHHhcCEEEecCCCCHHHHHHHHHHHHcCCCeEEE
Confidence 68999999999999999988542 1 1246789999999999999999999999999
Q ss_pred E-------EecCCccEEEecCC---------CCCccccccccccccCCcccc
Q psy437 140 V-------WKIQWKRIIWIHSL---------VLIKPDYLPPILDLRLGREDI 175 (184)
Q Consensus 140 a-------~D~~~vr~v~~~~~---------p~~~e~y~~~i~~~~~~r~~~ 175 (184)
| +|+|.. .|+..+. |-+..+|.|++ +|+||.+.
T Consensus 317 aT~~la~Gvnipa~-~VII~~~~~~~~~~~~~~s~~~~~Qm~--GRAGR~g~ 365 (674)
T PRK01172 317 ATPTLAAGVNLPAR-LVIVRDITRYGNGGIRYLSNMEIKQMI--GRAGRPGY 365 (674)
T ss_pred ecchhhccCCCcce-EEEEcCceEeCCCCceeCCHHHHHHHh--hcCCCCCC
Confidence 9 599985 4555554 34566778998 58888753
No 145
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=98.88 E-value=1.3e-08 Score=86.79 Aligned_cols=122 Identities=16% Similarity=0.112 Sum_probs=94.9
Q ss_pred EEEEEccChHHHHHHHHHhh-cCCCcEEEEeccHHHHHHHHHHHHhCCCeeEEecCCCCHHHHHHHHHHHhccCceEEEE
Q psy437 12 YEILPKKNVLKEVISLIKAK-YSGQSGIVYCLTRKECDSVAAALAQERINAISYHAGLADKLRNEVQMKWISNKVHVGHW 90 (184)
Q Consensus 12 y~v~~~~~k~~~L~~~l~~~-~~~~~~IIf~~tr~~~e~la~~L~~~gi~~~~~hg~l~~~~R~~~~~~f~~g~~~vlVa 90 (184)
..|.+....++.|++.|++. ..+..++|-+-|++.||.+.++|.+.|+++.++|++.+.-+|.+++..++.|...|||.
T Consensus 423 ievRp~~~QvdDL~~EI~~r~~~~eRvLVTtLTKkmAEdLT~Yl~e~gikv~YlHSdidTlER~eIirdLR~G~~DvLVG 502 (663)
T COG0556 423 IEVRPTKGQVDDLLSEIRKRVAKNERVLVTTLTKKMAEDLTEYLKELGIKVRYLHSDIDTLERVEIIRDLRLGEFDVLVG 502 (663)
T ss_pred eeeecCCCcHHHHHHHHHHHHhcCCeEEEEeehHHHHHHHHHHHHhcCceEEeeeccchHHHHHHHHHHHhcCCccEEEe
Confidence 44556666778888777652 36688999999999999999999999999999999999999999999999999999999
Q ss_pred EeecccHHHHHHHHHhcCCcE-EEeeCCCC---hHHHHHHHHHh---hCCCceEEE
Q psy437 91 TVVSKECDSVAAALAQERINA-ISYHAGLA---DKLRNEVQMKW---ISNKVHLYN 139 (184)
Q Consensus 91 T~tr~~~e~~a~gL~~~gi~~-~vih~~~p---~~~r~~~~~~f---~~~~~~v~v 139 (184)
.+ .+=.|||.|-++- .++-+|.+ .+.++-+|=.+ ++-...|+.
T Consensus 503 IN------LLREGLDiPEVsLVAIlDADKeGFLRse~SLIQtIGRAARN~~GkvIl 552 (663)
T COG0556 503 IN------LLREGLDLPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKVIL 552 (663)
T ss_pred eh------hhhccCCCcceeEEEEeecCccccccccchHHHHHHHHhhccCCeEEE
Confidence 99 7788999998882 23444433 35555566543 333444444
No 146
>KOG0350|consensus
Probab=98.88 E-value=3e-09 Score=89.85 Aligned_cols=89 Identities=10% Similarity=0.094 Sum_probs=79.5
Q ss_pred ceEEEEEeecccHHHHHHHHH----hcCCcEEEeeCCCChHHHHHHHHHhhCCCceEEEE-------EecCCccEEEecC
Q psy437 85 VHVGHWTVVSKECDSVAAALA----QERINAISYHAGLADKLRNEVQMKWISNKVHLYNV-------WKIQWKRIIWIHS 153 (184)
Q Consensus 85 ~~vlVaT~tr~~~e~~a~gL~----~~gi~~~vih~~~p~~~r~~~~~~f~~~~~~v~va-------~D~~~vr~v~~~~ 153 (184)
.++||+|++-..+-++++-|. ..+..+--+-+++.++.|.-..+.|..|++.++++ +|+.+|..|||||
T Consensus 430 ~r~lcf~~S~~sa~Rl~~~L~v~~~~~~~~~s~~t~~l~~k~r~k~l~~f~~g~i~vLIcSD~laRGiDv~~v~~VINYd 509 (620)
T KOG0350|consen 430 NRTLCFVNSVSSANRLAHVLKVEFCSDNFKVSEFTGQLNGKRRYKMLEKFAKGDINVLICSDALARGIDVNDVDNVINYD 509 (620)
T ss_pred ceEEEEecchHHHHHHHHHHHHHhccccchhhhhhhhhhHHHHHHHHHHHhcCCceEEEehhhhhcCCcccccceEeecC
Confidence 478999999988888888885 34444455889999999999999999999999999 5999999999999
Q ss_pred CCCCccccccccccc-cCCcc
Q psy437 154 LVLIKPDYLPPILDL-RLGRE 173 (184)
Q Consensus 154 ~p~~~e~y~~~i~~~-~~~r~ 173 (184)
+|.+...|+||++++ |+||+
T Consensus 510 ~P~~~ktyVHR~GRTARAgq~ 530 (620)
T KOG0350|consen 510 PPASDKTYVHRAGRTARAGQD 530 (620)
T ss_pred CCchhhHHHHhhcccccccCC
Confidence 999999999999995 99998
No 147
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=98.87 E-value=1.1e-07 Score=83.52 Aligned_cols=146 Identities=13% Similarity=0.119 Sum_probs=121.3
Q ss_pred HHHhhcCCCcEEEEeccHHHHHHH----HHHHHhCCCeeEEecCCCCHHHHHHHHHHHhccCceEEEEEeec--------
Q psy437 27 LIKAKYSGQSGIVYCLTRKECDSV----AAALAQERINAISYHAGLADKLRNEVQMKWISNKVHVGHWTVVS-------- 94 (184)
Q Consensus 27 ~l~~~~~~~~~IIf~~tr~~~e~l----a~~L~~~gi~~~~~hg~l~~~~R~~~~~~f~~g~~~vlVaT~tr-------- 94 (184)
.+.....+.++..-+||-=.|++- .++|...|+++..+-|.+..+.|.+++++..+|+++++|.|-+-
T Consensus 304 ml~ai~~G~Q~ALMAPTEILA~QH~~~~~~~l~~~~i~V~lLtG~~kgk~r~~~l~~l~~G~~~ivVGTHALiQd~V~F~ 383 (677)
T COG1200 304 MLAAIEAGYQAALMAPTEILAEQHYESLRKWLEPLGIRVALLTGSLKGKARKEILEQLASGEIDIVVGTHALIQDKVEFH 383 (677)
T ss_pred HHHHHHcCCeeEEeccHHHHHHHHHHHHHHHhhhcCCeEEEeecccchhHHHHHHHHHhCCCCCEEEEcchhhhcceeec
Confidence 333333677889999997666554 45555669999999999999999999999999999999998776
Q ss_pred --------------------------------------------------------------------------------
Q psy437 95 -------------------------------------------------------------------------------- 94 (184)
Q Consensus 95 -------------------------------------------------------------------------------- 94 (184)
T Consensus 384 ~LgLVIiDEQHRFGV~QR~~L~~KG~~~Ph~LvMTATPIPRTLAlt~fgDldvS~IdElP~GRkpI~T~~i~~~~~~~v~ 463 (677)
T COG1200 384 NLGLVIIDEQHRFGVHQRLALREKGEQNPHVLVMTATPIPRTLALTAFGDLDVSIIDELPPGRKPITTVVIPHERRPEVY 463 (677)
T ss_pred ceeEEEEeccccccHHHHHHHHHhCCCCCcEEEEeCCCchHHHHHHHhccccchhhccCCCCCCceEEEEeccccHHHHH
Confidence
Q ss_pred ----------------------------ccHHHHHHHHH--hcCCcEEEeeCCCChHHHHHHHHHhhCCCceEEEE----
Q psy437 95 ----------------------------KECDSVAAALA--QERINAISYHAGLADKLRNEVQMKWISNKVHLYNV---- 140 (184)
Q Consensus 95 ----------------------------~~~e~~a~gL~--~~gi~~~vih~~~p~~~r~~~~~~f~~~~~~v~va---- 140 (184)
+.++.++..|. .++..+..+||-|+.+.++.+++.|++|++.|+||
T Consensus 464 e~i~~ei~~GrQaY~VcPLIeESE~l~l~~a~~~~~~L~~~~~~~~vgL~HGrm~~~eKd~vM~~Fk~~e~~ILVaTTVI 543 (677)
T COG1200 464 ERIREEIAKGRQAYVVCPLIEESEKLELQAAEELYEELKSFLPELKVGLVHGRMKPAEKDAVMEAFKEGEIDILVATTVI 543 (677)
T ss_pred HHHHHHHHcCCEEEEEeccccccccchhhhHHHHHHHHHHHcccceeEEEecCCChHHHHHHHHHHHcCCCcEEEEeeEE
Confidence 35667777775 35677899999999999999999999999999999
Q ss_pred ---EecCCccEEEecCCCCCccccccccccccCCcc
Q psy437 141 ---WKIQWKRIIWIHSLVLIKPDYLPPILDLRLGRE 173 (184)
Q Consensus 141 ---~D~~~vr~v~~~~~p~~~e~y~~~i~~~~~~r~ 173 (184)
.|.||-...+..+.-.-=-+-+|.. ++|+||=
T Consensus 544 EVGVdVPnATvMVIe~AERFGLaQLHQL-RGRVGRG 578 (677)
T COG1200 544 EVGVDVPNATVMVIENAERFGLAQLHQL-RGRVGRG 578 (677)
T ss_pred EecccCCCCeEEEEechhhhhHHHHHHh-ccccCCC
Confidence 4999999999888766666778874 8999995
No 148
>PRK09401 reverse gyrase; Reviewed
Probab=98.85 E-value=1.9e-08 Score=94.63 Aligned_cols=79 Identities=15% Similarity=0.007 Sum_probs=71.6
Q ss_pred ceEEEEEeeccc---HHHHHHHHHhcCCcEEEeeCCCChHHHHHHHHHhhCCCceEEEE-----------EecCC-ccEE
Q psy437 85 VHVGHWTVVSKE---CDSVAAALAQERINAISYHAGLADKLRNEVQMKWISNKVHLYNV-----------WKIQW-KRII 149 (184)
Q Consensus 85 ~~vlVaT~tr~~---~e~~a~gL~~~gi~~~vih~~~p~~~r~~~~~~f~~~~~~v~va-----------~D~~~-vr~v 149 (184)
.++||+++++.. |+.++..|...|+++..+|+++ +..+ +.|++|++.|+|+ +|+|+ ||+|
T Consensus 329 ~~~LIFv~t~~~~~~ae~l~~~L~~~gi~v~~~hg~l----~~~l-~~F~~G~~~VLVatas~tdv~aRGIDiP~~IryV 403 (1176)
T PRK09401 329 DGGLIFVPSDKGKEYAEELAEYLEDLGINAELAISGF----ERKF-EKFEEGEVDVLVGVASYYGVLVRGIDLPERIRYA 403 (1176)
T ss_pred CCEEEEEecccChHHHHHHHHHHHHCCCcEEEEeCcH----HHHH-HHHHCCCCCEEEEecCCCCceeecCCCCcceeEE
Confidence 479999999988 9999999999999999999999 2233 9999999999998 49999 8999
Q ss_pred EecCCCC------Cccccccccccc
Q psy437 150 WIHSLVL------IKPDYLPPILDL 168 (184)
Q Consensus 150 ~~~~~p~------~~e~y~~~i~~~ 168 (184)
|||++|+ ..+.|.|+++++
T Consensus 404 I~y~vP~~~~~~~~~~~~~~~~~r~ 428 (1176)
T PRK09401 404 IFYGVPKFKFSLEEELAPPFLLLRL 428 (1176)
T ss_pred EEeCCCCEEEeccccccCHHHHHHH
Confidence 9999999 889999999875
No 149
>PRK12904 preprotein translocase subunit SecA; Reviewed
Probab=98.85 E-value=2.4e-08 Score=90.18 Aligned_cols=96 Identities=16% Similarity=0.118 Sum_probs=79.5
Q ss_pred CCCCCCeEEEE-----EEccChHHHHHHHHHhh-cCCCcEEEEeccHHHHHHHHHHHHhCCCeeEEecCCCCHHHHHHHH
Q psy437 4 SFNRANLKYEI-----LPKKNVLKEVISLIKAK-YSGQSGIVYCLTRKECDSVAAALAQERINAISYHAGLADKLRNEVQ 77 (184)
Q Consensus 4 s~~R~Nl~y~v-----~~~~~k~~~L~~~l~~~-~~~~~~IIf~~tr~~~e~la~~L~~~gi~~~~~hg~l~~~~R~~~~ 77 (184)
|.+||.+.... .....|...|.+.+.+. ..+.|+||||+|...++.++..|.+.|+++..+||. +.+|+..+
T Consensus 394 Ptnkp~~r~d~~d~i~~t~~~K~~aI~~~I~~~~~~grpVLIft~Si~~se~Ls~~L~~~gi~~~vLnak--q~eREa~I 471 (830)
T PRK12904 394 PTNRPMIRIDHPDLIYKTEKEKFDAVVEDIKERHKKGQPVLVGTVSIEKSELLSKLLKKAGIPHNVLNAK--NHEREAEI 471 (830)
T ss_pred CCCCCeeeeeCCCeEEECHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCceEeccCc--hHHHHHHH
Confidence 66778776442 12235888888888652 367899999999999999999999999999999995 78999999
Q ss_pred HHHhccCceEEEEEeecccHHHHHHHHHhc
Q psy437 78 MKWISNKVHVGHWTVVSKECDSVAAALAQE 107 (184)
Q Consensus 78 ~~f~~g~~~vlVaT~tr~~~e~~a~gL~~~ 107 (184)
.+|..+...|+|||+ .++||+|++
T Consensus 472 ia~Ag~~g~VtIATN------mAGRGtDI~ 495 (830)
T PRK12904 472 IAQAGRPGAVTIATN------MAGRGTDIK 495 (830)
T ss_pred HHhcCCCceEEEecc------cccCCcCcc
Confidence 999999999999999 667776643
No 150
>PRK13766 Hef nuclease; Provisional
Probab=98.82 E-value=2.1e-08 Score=91.20 Aligned_cols=89 Identities=15% Similarity=0.166 Sum_probs=82.0
Q ss_pred ccCceEEEEEeecccHHHHHHHHHhcCCcEEEeeCC--------CChHHHHHHHHHhhCCCceEEEE-------EecCCc
Q psy437 82 SNKVHVGHWTVVSKECDSVAAALAQERINAISYHAG--------LADKLRNEVQMKWISNKVHLYNV-------WKIQWK 146 (184)
Q Consensus 82 ~g~~~vlVaT~tr~~~e~~a~gL~~~gi~~~vih~~--------~p~~~r~~~~~~f~~~~~~v~va-------~D~~~v 146 (184)
.+..++||+|..+..|+.++..|...|+++..+|+. +++..|..+.+.|++|...++++ +|+|++
T Consensus 363 ~~~~kvlIF~~~~~t~~~L~~~L~~~~~~~~~~~g~~~~~~~~~~~~~~r~~~~~~F~~g~~~vLvaT~~~~eGldi~~~ 442 (773)
T PRK13766 363 NPDSRIIVFTQYRDTAEKIVDLLEKEGIKAVRFVGQASKDGDKGMSQKEQIEILDKFRAGEFNVLVSTSVAEEGLDIPSV 442 (773)
T ss_pred CCCCeEEEEeCcHHHHHHHHHHHHhCCCceEEEEccccccccCCCCHHHHHHHHHHHHcCCCCEEEECChhhcCCCcccC
Confidence 456789999999999999999999999998889886 99999999999999999999999 699999
Q ss_pred cEEEecCCCCCccccccccccccCCc
Q psy437 147 RIIWIHSLVLIKPDYLPPILDLRLGR 172 (184)
Q Consensus 147 r~v~~~~~p~~~e~y~~~i~~~~~~r 172 (184)
++||+|++|.+...|+|++ +|.||
T Consensus 443 ~~VI~yd~~~s~~r~iQR~--GR~gR 466 (773)
T PRK13766 443 DLVIFYEPVPSEIRSIQRK--GRTGR 466 (773)
T ss_pred CEEEEeCCCCCHHHHHHHh--cccCc
Confidence 9999999999999999988 47777
No 151
>smart00490 HELICc helicase superfamily c-terminal domain.
Probab=98.82 E-value=1.9e-08 Score=65.08 Aligned_cols=73 Identities=23% Similarity=0.336 Sum_probs=65.8
Q ss_pred HHHHHHHhcCCcEEEeeCCCChHHHHHHHHHhhCCCceEEEE-------EecCCccEEEecCCCCCccccccccccccCC
Q psy437 99 SVAAALAQERINAISYHAGLADKLRNEVQMKWISNKVHLYNV-------WKIQWKRIIWIHSLVLIKPDYLPPILDLRLG 171 (184)
Q Consensus 99 ~~a~gL~~~gi~~~vih~~~p~~~r~~~~~~f~~~~~~v~va-------~D~~~vr~v~~~~~p~~~e~y~~~i~~~~~~ 171 (184)
.++..|...++.+.++|++++...+..+.+.|.++...++++ +|.|+++.|+.+++|.+...|.|.++ |++
T Consensus 2 ~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gi~~~~~~~vi~~~~~~~~~~~~Q~~g--R~~ 79 (82)
T smart00490 2 ELAELLKELGIKVARLHGGLSQEEREEILEKFNNGKIKVLVATDVAERGLDLPGVDLVIIYDLPWSPASYIQRIG--RAG 79 (82)
T ss_pred HHHHHHHHCCCeEEEEECCCCHHHHHHHHHHHHcCCCeEEEECChhhCCcChhcCCEEEEeCCCCCHHHHHHhhc--ccc
Confidence 466778888999999999999999999999999999988887 59999999999999999999999994 666
Q ss_pred cc
Q psy437 172 RE 173 (184)
Q Consensus 172 r~ 173 (184)
|.
T Consensus 80 R~ 81 (82)
T smart00490 80 RA 81 (82)
T ss_pred cC
Confidence 64
No 152
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=98.81 E-value=2.3e-07 Score=84.12 Aligned_cols=85 Identities=13% Similarity=0.071 Sum_probs=71.4
Q ss_pred cCceEEEEEeecccHHHHHHHHHhcCCcEEEeeCCCChHHHH-----HHHHHhhC----CC-------ceEEEE------
Q psy437 83 NKVHVGHWTVVSKECDSVAAALAQERINAISYHAGLADKLRN-----EVQMKWIS----NK-------VHLYNV------ 140 (184)
Q Consensus 83 g~~~vlVaT~tr~~~e~~a~gL~~~gi~~~vih~~~p~~~r~-----~~~~~f~~----~~-------~~v~va------ 140 (184)
...++||+|+++..|+.++..|...++ ..+|++|++..|. .+++.|++ ++ ..|+||
T Consensus 271 ~g~~vLVF~NTv~~Aq~L~~~L~~~g~--~lLHG~m~q~dR~~~~~~~il~~Fk~~~~~g~~~~~~~g~~ILVATdVaer 348 (844)
T TIGR02621 271 SGGAILVFCRTVKHVRKVFAKLPKEKF--ELLTGTLRGAERDDLVKKEIFNRFLPQMLSGSRARPQQGTVYLVCTSAGEV 348 (844)
T ss_pred CCCcEEEEECCHHHHHHHHHHHHhcCC--eEeeCCCCHHHHhhHHHHHHHHHHhccccccccccccccceEEeccchhhh
Confidence 345799999999999999999998887 8999999999999 77888987 43 678888
Q ss_pred -EecCCccEEEecCCCCCccccccccccc-cCCc
Q psy437 141 -WKIQWKRIIWIHSLVLIKPDYLPPILDL-RLGR 172 (184)
Q Consensus 141 -~D~~~vr~v~~~~~p~~~e~y~~~i~~~-~~~r 172 (184)
+|++. ..||++..| .++|+||++++ |.|+
T Consensus 349 GLDId~-d~VI~d~aP--~esyIQRiGRtgR~G~ 379 (844)
T TIGR02621 349 GVNISA-DHLVCDLAP--FESMQQRFGRVNRFGE 379 (844)
T ss_pred cccCCc-ceEEECCCC--HHHHHHHhcccCCCCC
Confidence 69987 788887766 59999999752 5555
No 153
>PRK09694 helicase Cas3; Provisional
Probab=98.80 E-value=6e-08 Score=88.69 Aligned_cols=90 Identities=13% Similarity=0.037 Sum_probs=75.7
Q ss_pred CCCcEEEEeccHHHHHHHHHHHHhCC---CeeEEecCCCCHHHHH----HHHHHH-hccC---ceEEEEEeecccHHHHH
Q psy437 33 SGQSGIVYCLTRKECDSVAAALAQER---INAISYHAGLADKLRN----EVQMKW-ISNK---VHVGHWTVVSKECDSVA 101 (184)
Q Consensus 33 ~~~~~IIf~~tr~~~e~la~~L~~~g---i~~~~~hg~l~~~~R~----~~~~~f-~~g~---~~vlVaT~tr~~~e~~a 101 (184)
.+.+++|||||.+.|+.+++.|++.+ .++..+||.+.+.+|. ++++.| ++|+ ..|||+|. .+.
T Consensus 559 ~g~~vLVf~NTV~~Aq~ly~~L~~~~~~~~~v~llHsrf~~~dR~~~E~~vl~~fgk~g~r~~~~ILVaTQ------ViE 632 (878)
T PRK09694 559 AGAQVCLICNLVDDAQKLYQRLKELNNTQVDIDLFHARFTLNDRREKEQRVIENFGKNGKRNQGRILVATQ------VVE 632 (878)
T ss_pred cCCEEEEEECCHHHHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHHHHHHhcCCcCCCeEEEECc------chh
Confidence 56789999999999999999999764 6799999999999984 567778 5565 47999999 899
Q ss_pred HHHHhcCCcEEEeeCCCChHHHHHHHHHhhC
Q psy437 102 AALAQERINAISYHAGLADKLRNEVQMKWIS 132 (184)
Q Consensus 102 ~gL~~~gi~~~vih~~~p~~~r~~~~~~f~~ 132 (184)
+|||. +.+ .+|....| ...++||..|-
T Consensus 633 ~GLDI-d~D-vlItdlaP--idsLiQRaGR~ 659 (878)
T PRK09694 633 QSLDL-DFD-WLITQLCP--VDLLFQRLGRL 659 (878)
T ss_pred heeec-CCC-eEEECCCC--HHHHHHHHhcc
Confidence 99999 578 78887777 56999999653
No 154
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=98.80 E-value=1.1e-08 Score=92.68 Aligned_cols=95 Identities=14% Similarity=0.109 Sum_probs=76.9
Q ss_pred CCCCCCeEEE-----EEEccChHHHHHHHHHhh-cCCCcEEEEeccHHHHHHHHHHHHhCCCeeEEecCCCCHHHHHHHH
Q psy437 4 SFNRANLKYE-----ILPKKNVLKEVISLIKAK-YSGQSGIVYCLTRKECDSVAAALAQERINAISYHAGLADKLRNEVQ 77 (184)
Q Consensus 4 s~~R~Nl~y~-----v~~~~~k~~~L~~~l~~~-~~~~~~IIf~~tr~~~e~la~~L~~~gi~~~~~hg~l~~~~R~~~~ 77 (184)
|.+||.+.-. ......|...+++.+.+. ..+.|+||||+|.+.++.++..|.+.|+++..+||++++.+|..+.
T Consensus 408 Ptnkp~~R~d~~d~v~~t~~~k~~av~~~i~~~~~~g~PVLVgt~Sie~sE~ls~~L~~~gi~h~vLnak~~q~Ea~iia 487 (896)
T PRK13104 408 PTNRSMIRKDEADLVYLTQADKFQAIIEDVRECGVRKQPVLVGTVSIEASEFLSQLLKKENIKHQVLNAKFHEKEAQIIA 487 (896)
T ss_pred CCCCCcceecCCCeEEcCHHHHHHHHHHHHHHHHhCCCCEEEEeCcHHHHHHHHHHHHHcCCCeEeecCCCChHHHHHHH
Confidence 5677776532 122335888888777543 3678999999999999999999999999999999999999999999
Q ss_pred HHHhccCceEEEEEeecccHHHHHHHHHh
Q psy437 78 MKWISNKVHVGHWTVVSKECDSVAAALAQ 106 (184)
Q Consensus 78 ~~f~~g~~~vlVaT~tr~~~e~~a~gL~~ 106 (184)
+.|+.|. |+|||+ .++||+|+
T Consensus 488 ~Ag~~G~--VtIATN------mAGRGtDI 508 (896)
T PRK13104 488 EAGRPGA--VTIATN------MAGRGTDI 508 (896)
T ss_pred hCCCCCc--EEEecc------CccCCcce
Confidence 9999994 999999 55555554
No 155
>KOG0332|consensus
Probab=98.77 E-value=3.1e-08 Score=81.29 Aligned_cols=108 Identities=10% Similarity=0.043 Sum_probs=91.1
Q ss_pred HHHHHHHHHHHhcc-C-ceEEEEEeecccHHHHHHHHHhcCCcEEEeeCCCChHHHHHHHHHhhCCCceEEEE-------
Q psy437 70 DKLRNEVQMKWISN-K-VHVGHWTVVSKECDSVAAALAQERINAISYHAGLADKLRNEVQMKWISNKVHLYNV------- 140 (184)
Q Consensus 70 ~~~R~~~~~~f~~g-~-~~vlVaT~tr~~~e~~a~gL~~~gi~~~vih~~~p~~~r~~~~~~f~~~~~~v~va------- 140 (184)
.+++..++-.+-.. . .+-||+|-|+..+..++..|...|..+.++||+|.-..|..+...|+.|+.+|+++
T Consensus 314 ~~~K~~~l~~lyg~~tigqsiIFc~tk~ta~~l~~~m~~~Gh~V~~l~G~l~~~~R~~ii~~Fr~g~~kVLitTnV~ARG 393 (477)
T KOG0332|consen 314 RDDKYQALVNLYGLLTIGQSIIFCHTKATAMWLYEEMRAEGHQVSLLHGDLTVEQRAAIIDRFREGKEKVLITTNVCARG 393 (477)
T ss_pred hhhHHHHHHHHHhhhhhhheEEEEeehhhHHHHHHHHHhcCceeEEeeccchhHHHHHHHHHHhcCcceEEEEechhhcc
Confidence 34555555553322 1 25699999999999999999999999999999999999999999999999999998
Q ss_pred EecCCccEEEecCCCCC------cccccccccc-ccCCcccccc
Q psy437 141 WKIQWKRIIWIHSLVLI------KPDYLPPILD-LRLGREDIRE 177 (184)
Q Consensus 141 ~D~~~vr~v~~~~~p~~------~e~y~~~i~~-~~~~r~~~~~ 177 (184)
+|.+.|..|+|||+|.. .|.|+|||++ +|-||.++.=
T Consensus 394 iDv~qVs~VvNydlP~~~~~~pD~etYlHRiGRtGRFGkkG~a~ 437 (477)
T KOG0332|consen 394 IDVAQVSVVVNYDLPVKYTGEPDYETYLHRIGRTGRFGKKGLAI 437 (477)
T ss_pred cccceEEEEEecCCccccCCCCCHHHHHHHhcccccccccceEE
Confidence 69999999999999975 5789999988 5888875543
No 156
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=98.77 E-value=7.1e-08 Score=90.63 Aligned_cols=87 Identities=14% Similarity=0.068 Sum_probs=73.4
Q ss_pred cCceEEEEEeecccHHHHHHHHHhcCCc---EEEeeCCCChHHHHHHHHHhhCCCceEEEE-------EecCCccEEEec
Q psy437 83 NKVHVGHWTVVSKECDSVAAALAQERIN---AISYHAGLADKLRNEVQMKWISNKVHLYNV-------WKIQWKRIIWIH 152 (184)
Q Consensus 83 g~~~vlVaT~tr~~~e~~a~gL~~~gi~---~~vih~~~p~~~r~~~~~~f~~~~~~v~va-------~D~~~vr~v~~~ 152 (184)
+..+|||++++..+++.++..|...+++ +..+|+++|++.+..+.+. .|+.+|++| +|+|+|++||++
T Consensus 285 ~~GdILVFLpg~~EIe~lae~L~~~~~~~~~VlpLhg~Ls~~eQ~~Vf~~--~g~rkIIVATNIAEtSITIpgI~yVID~ 362 (1294)
T PRK11131 285 GPGDILIFMSGEREIRDTADALNKLNLRHTEILPLYARLSNSEQNRVFQS--HSGRRIVLATNVAETSLTVPGIKYVIDP 362 (1294)
T ss_pred CCCCEEEEcCCHHHHHHHHHHHHhcCCCcceEeecccCCCHHHHHHHhcc--cCCeeEEEeccHHhhccccCcceEEEEC
Confidence 4567999999999999999999887765 5679999999999887765 467899999 699999999998
Q ss_pred C---------------CC---CCccccccccccccCCcc
Q psy437 153 S---------------LV---LIKPDYLPPILDLRLGRE 173 (184)
Q Consensus 153 ~---------------~p---~~~e~y~~~i~~~~~~r~ 173 (184)
+ +| .|..+|.||. +|+||.
T Consensus 363 Gl~k~~~Yd~~~~~~~Lp~~~iSkasa~QRa--GRAGR~ 399 (1294)
T PRK11131 363 GTARISRYSYRTKVQRLPIEPISQASANQRK--GRCGRV 399 (1294)
T ss_pred CCccccccccccCcccCCeeecCHhhHhhhc--cccCCC
Confidence 5 44 4557899999 588885
No 157
>KOG0351|consensus
Probab=98.77 E-value=6.4e-08 Score=88.72 Aligned_cols=107 Identities=24% Similarity=0.302 Sum_probs=98.1
Q ss_pred CCcEEEEeccHHHHHHHHHHHHhCCCeeEEecCCCCHHHHHHHHHHHhcc--CceE------------------------
Q psy437 34 GQSGIVYCLTRKECDSVAAALAQERINAISYHAGLADKLRNEVQMKWISN--KVHV------------------------ 87 (184)
Q Consensus 34 ~~~~IIf~~tr~~~e~la~~L~~~gi~~~~~hg~l~~~~R~~~~~~f~~g--~~~v------------------------ 87 (184)
++-+||..|-....+.....|...+|++.+++|+++..+|..+++.+.+| .+++
T Consensus 304 ~gitvVISPL~SLm~DQv~~L~~~~I~a~~L~s~q~~~~~~~i~q~l~~~~~~ikilYvtPE~v~~~~~l~~~~~~L~~~ 383 (941)
T KOG0351|consen 304 GGVTVVISPLISLMQDQVTHLSKKGIPACFLSSIQTAAERLAILQKLANGNPIIKILYVTPEKVVASEGLLESLADLYAR 383 (941)
T ss_pred CCceEEeccHHHHHHHHHHhhhhcCcceeeccccccHHHHHHHHHHHhCCCCeEEEEEeCHHHhhcccchhhHHHhccCC
Confidence 34578888889999999999988899999999999999999999999999 5555
Q ss_pred --------------------------------------------------------------------------------
Q psy437 88 -------------------------------------------------------------------------------- 87 (184)
Q Consensus 88 -------------------------------------------------------------------------------- 87 (184)
T Consensus 384 ~~lal~vIDEAHCVSqWgHdFRp~Yk~l~~l~~~~~~vP~iALTATAT~~v~~DIi~~L~l~~~~~~~~sfnR~NL~yeV 463 (941)
T KOG0351|consen 384 GLLALFVIDEAHCVSQWGHDFRPSYKRLGLLRIRFPGVPFIALTATATERVREDVIRSLGLRNPELFKSSFNRPNLKYEV 463 (941)
T ss_pred CeeEEEEecHHHHhhhhcccccHHHHHHHHHHhhCCCCCeEEeehhccHHHHHHHHHHhCCCCcceecccCCCCCceEEE
Confidence
Q ss_pred -------------------------EEEEeecccHHHHHHHHHhcCCcEEEeeCCCChHHHHHHHHHhhCCCceEEEE
Q psy437 88 -------------------------GHWTVVSKECDSVAAALAQERINAISYHAGLADKLRNEVQMKWISNKVHLYNV 140 (184)
Q Consensus 88 -------------------------lVaT~tr~~~e~~a~gL~~~gi~~~vih~~~p~~~r~~~~~~f~~~~~~v~va 140 (184)
||||.+|.+||.++..|...|+++..||+||+.+.|..+|++|.+++++|+||
T Consensus 464 ~~k~~~~~~~~~~~~~~~~~~~~s~IIYC~sr~~ce~vs~~L~~~~~~a~~YHAGl~~~~R~~Vq~~w~~~~~~VivA 541 (941)
T KOG0351|consen 464 SPKTDKDALLDILEESKLRHPDQSGIIYCLSRKECEQVSAVLRSLGKSAAFYHAGLPPKERETVQKAWMSDKIRVIVA 541 (941)
T ss_pred EeccCccchHHHHHHhhhcCCCCCeEEEeCCcchHHHHHHHHHHhchhhHhhhcCCCHHHHHHHHHHHhcCCCeEEEE
Confidence 77777779999999999999999999999999999999999999999999998
No 158
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
Probab=98.75 E-value=1e-07 Score=81.59 Aligned_cols=104 Identities=9% Similarity=0.050 Sum_probs=88.2
Q ss_pred hHHHHHHHHHhhcCCCcEEEEeccHHHHHHHHHHHHhCCCeeEEecCCCCHHHHHHHHHHHhccCceEEEEEeecccHHH
Q psy437 20 VLKEVISLIKAKYSGQSGIVYCLTRKECDSVAAALAQERINAISYHAGLADKLRNEVQMKWISNKVHVGHWTVVSKECDS 99 (184)
Q Consensus 20 k~~~L~~~l~~~~~~~~~IIf~~tr~~~e~la~~L~~~gi~~~~~hg~l~~~~R~~~~~~f~~g~~~vlVaT~tr~~~e~ 99 (184)
+...+...+..+....+++|||.+...++.++..|...|+ +..+.|..++.+|..++++|++|+.++||.+. .
T Consensus 269 ~~~~~~~~~~~~~~~~~~lif~~~~~~a~~i~~~~~~~~~-~~~it~~t~~~eR~~il~~fr~g~~~~lv~~~------v 341 (442)
T COG1061 269 KIAAVRGLLLKHARGDKTLIFASDVEHAYEIAKLFLAPGI-VEAITGETPKEEREAILERFRTGGIKVLVTVK------V 341 (442)
T ss_pred HHHHHHHHHHHhcCCCcEEEEeccHHHHHHHHHHhcCCCc-eEEEECCCCHHHHHHHHHHHHcCCCCEEEEee------e
Confidence 4444555554322357899999999999999999998888 88999999999999999999999999999999 7
Q ss_pred HHHHHHhcCCcEEEeeCCCChHHHHHHHHHhh
Q psy437 100 VAAALAQERINAISYHAGLADKLRNEVQMKWI 131 (184)
Q Consensus 100 ~a~gL~~~gi~~~vih~~~p~~~r~~~~~~f~ 131 (184)
+-.|.|.|++++.++=.+ ..+.+.|+|+.++
T Consensus 342 l~EGvDiP~~~~~i~~~~-t~S~~~~~Q~lGR 372 (442)
T COG1061 342 LDEGVDIPDADVLIILRP-TGSRRLFIQRLGR 372 (442)
T ss_pred ccceecCCCCcEEEEeCC-CCcHHHHHHHhhh
Confidence 788999999995555555 9999999999854
No 159
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=98.73 E-value=3.5e-07 Score=82.59 Aligned_cols=163 Identities=16% Similarity=0.051 Sum_probs=121.9
Q ss_pred CeEEEEEEcc-----C----hHHHHHHHHHhhcCCCcEEEEeccHHHHHHHHHHHHhCCC---------------eeEEe
Q psy437 9 NLKYEILPKK-----N----VLKEVISLIKAKYSGQSGIVYCLTRKECDSVAAALAQERI---------------NAISY 64 (184)
Q Consensus 9 Nl~y~v~~~~-----~----k~~~L~~~l~~~~~~~~~IIf~~tr~~~e~la~~L~~~gi---------------~~~~~ 64 (184)
|+.|.+...- + -+...++.|.+.....+-|-...|....+.++++|...+- .+..-
T Consensus 149 ~vr~VIVDEiHel~~sKRG~~Lsl~LeRL~~l~~~~qRIGLSATV~~~~~varfL~g~~~~~~Iv~~~~~k~~~i~v~~p 228 (814)
T COG1201 149 DVRYVIVDEIHALAESKRGVQLALSLERLRELAGDFQRIGLSATVGPPEEVAKFLVGFGDPCEIVDVSAAKKLEIKVISP 228 (814)
T ss_pred CCcEEEeehhhhhhccccchhhhhhHHHHHhhCcccEEEeehhccCCHHHHHHHhcCCCCceEEEEcccCCcceEEEEec
Confidence 5667766432 1 2233334444433356778899999999999999975531 11111
Q ss_pred cCCC-----CHHHHHHHHHHHhccCceEEEEEeecccHHHHHHHHHhcC-CcEEEeeCCCChHHHHHHHHHhhCCCceEE
Q psy437 65 HAGL-----ADKLRNEVQMKWISNKVHVGHWTVVSKECDSVAAALAQER-INAISYHAGLADKLRNEVQMKWISNKVHLY 138 (184)
Q Consensus 65 hg~l-----~~~~R~~~~~~f~~g~~~vlVaT~tr~~~e~~a~gL~~~g-i~~~vih~~~p~~~r~~~~~~f~~~~~~v~ 138 (184)
...+ .-..+...+....+.....||+|+||..+|.++..|...+ ..+.+=|+.++...|..+-+.|++|.++.+
T Consensus 229 ~~~~~~~~~~~~~~~~~i~~~v~~~~ttLIF~NTR~~aE~l~~~L~~~~~~~i~~HHgSlSre~R~~vE~~lk~G~lrav 308 (814)
T COG1201 229 VEDLIYDEELWAALYERIAELVKKHRTTLIFTNTRSGAERLAFRLKKLGPDIIEVHHGSLSRELRLEVEERLKEGELKAV 308 (814)
T ss_pred CCccccccchhHHHHHHHHHHHhhcCcEEEEEeChHHHHHHHHHHHHhcCCceeeecccccHHHHHHHHHHHhcCCceEE
Confidence 1111 1123445556666666689999999999999999998776 777888899999999999999999999999
Q ss_pred EE-------EecCCccEEEecCCCCCccccccccccccCCcc
Q psy437 139 NV-------WKIQWKRIIWIHSLVLIKPDYLPPILDLRLGRE 173 (184)
Q Consensus 139 va-------~D~~~vr~v~~~~~p~~~e~y~~~i~~~~~~r~ 173 (184)
|| +|+-+|..|+++.-|++.-..+||++ |+|..
T Consensus 309 V~TSSLELGIDiG~vdlVIq~~SP~sV~r~lQRiG--RsgHr 348 (814)
T COG1201 309 VATSSLELGIDIGDIDLVIQLGSPKSVNRFLQRIG--RAGHR 348 (814)
T ss_pred EEccchhhccccCCceEEEEeCCcHHHHHHhHhcc--ccccc
Confidence 99 69999999999999999999999994 66654
No 160
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only]
Probab=98.72 E-value=1.8e-08 Score=86.77 Aligned_cols=152 Identities=18% Similarity=0.287 Sum_probs=107.1
Q ss_pred hHHHHHHHHHhhcCCCcEEEEeccHHHHHHHHHHHHhCCCeeEEecCC---------C--CHHHHHHHH-----HHHhc-
Q psy437 20 VLKEVISLIKAKYSGQSGIVYCLTRKECDSVAAALAQERINAISYHAG---------L--ADKLRNEVQ-----MKWIS- 82 (184)
Q Consensus 20 k~~~L~~~l~~~~~~~~~IIf~~tr~~~e~la~~L~~~gi~~~~~hg~---------l--~~~~R~~~~-----~~f~~- 82 (184)
+++-|+..|+..+++.+-|-...|....+.+|..|... ...|... . ...++..++ ..|.+
T Consensus 358 RLdGLI~RLr~l~~~AQ~i~LSATVgNp~elA~~l~a~---lV~y~~RPVplErHlvf~~~e~eK~~ii~~L~k~E~~~~ 434 (830)
T COG1202 358 RLDGLIGRLRYLFPGAQFIYLSATVGNPEELAKKLGAK---LVLYDERPVPLERHLVFARNESEKWDIIARLVKREFSTE 434 (830)
T ss_pred chhhHHHHHHHhCCCCeEEEEEeecCChHHHHHHhCCe---eEeecCCCCChhHeeeeecCchHHHHHHHHHHHHHHhhh
Confidence 66777777877666666666788999999999999542 2222110 0 112222222 23332
Q ss_pred ---c-CceEEEEEeecccHHHHHHHHHhcCCcEEEeeCCCChHHHHHHHHHhhCCCceEEEE-------EecCCccEEE-
Q psy437 83 ---N-KVHVGHWTVVSKECDSVAAALAQERINAISYHAGLADKLRNEVQMKWISNKVHLYNV-------WKIQWKRIIW- 150 (184)
Q Consensus 83 ---g-~~~vlVaT~tr~~~e~~a~gL~~~gi~~~vih~~~p~~~r~~~~~~f~~~~~~v~va-------~D~~~vr~v~- 150 (184)
| ..+.||+|.+|+.|..+|..|+..|+++..||+|+|...|.-+-+.|.++.+.++|. .|.|--.-|+
T Consensus 435 sskg~rGQtIVFT~SRrr~h~lA~~L~~kG~~a~pYHaGL~y~eRk~vE~~F~~q~l~~VVTTAAL~AGVDFPASQVIFE 514 (830)
T COG1202 435 SSKGYRGQTIVFTYSRRRCHELADALTGKGLKAAPYHAGLPYKERKSVERAFAAQELAAVVTTAALAAGVDFPASQVIFE 514 (830)
T ss_pred hccCcCCceEEEecchhhHHHHHHHhhcCCcccccccCCCcHHHHHHHHHHHhcCCcceEeehhhhhcCCCCchHHHHHH
Confidence 1 347899999999999999999999999999999999999999999999999999997 3888643332
Q ss_pred --ecCCCCCccccccccccccCCcccc
Q psy437 151 --IHSLVLIKPDYLPPILDLRLGREDI 175 (184)
Q Consensus 151 --~~~~p~~~e~y~~~i~~~~~~r~~~ 175 (184)
-+..-.-...-+|..+ +|+||.+.
T Consensus 515 sLaMG~~WLs~~EF~QM~-GRAGRp~y 540 (830)
T COG1202 515 SLAMGIEWLSVREFQQML-GRAGRPDY 540 (830)
T ss_pred HHHcccccCCHHHHHHHh-cccCCCCc
Confidence 2223333445556655 79999744
No 161
>PRK05580 primosome assembly protein PriA; Validated
Probab=98.66 E-value=1.7e-06 Score=77.83 Aligned_cols=76 Identities=14% Similarity=0.039 Sum_probs=60.8
Q ss_pred ChHHHHHHHHHhh-cCCCcEEEEeccHHHHHHHHHHHHh-CCCeeEEecCCCCHHHHHHHHHHHhccCceEEEEEeec
Q psy437 19 NVLKEVISLIKAK-YSGQSGIVYCLTRKECDSVAAALAQ-ERINAISYHAGLADKLRNEVQMKWISNKVHVGHWTVVS 94 (184)
Q Consensus 19 ~k~~~L~~~l~~~-~~~~~~IIf~~tr~~~e~la~~L~~-~gi~~~~~hg~l~~~~R~~~~~~f~~g~~~vlVaT~tr 94 (184)
.|.......+... ..+.++||.+||++.+.++.+.|.+ .|..+..+||+++..+|.+...+..+|+.+|+|+|.+.
T Consensus 174 GKT~v~l~~i~~~l~~g~~vLvLvPt~~L~~Q~~~~l~~~fg~~v~~~~s~~s~~~r~~~~~~~~~g~~~IVVgTrsa 251 (679)
T PRK05580 174 GKTEVYLQAIAEVLAQGKQALVLVPEIALTPQMLARFRARFGAPVAVLHSGLSDGERLDEWRKAKRGEAKVVIGARSA 251 (679)
T ss_pred hHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHHhCCCEEEEECCCCHHHHHHHHHHHHcCCCCEEEeccHH
Confidence 4555444433221 1456899999999999999999986 47889999999999999999888999999999998865
No 162
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.65 E-value=1e-06 Score=76.58 Aligned_cols=76 Identities=14% Similarity=0.053 Sum_probs=59.4
Q ss_pred ChHHHHHHHHHhh-cCCCcEEEEeccHHHHHHHHHHHHhC-CCeeEEecCCCCHHHHHHHHHHHhccCceEEEEEeec
Q psy437 19 NVLKEVISLIKAK-YSGQSGIVYCLTRKECDSVAAALAQE-RINAISYHAGLADKLRNEVQMKWISNKVHVGHWTVVS 94 (184)
Q Consensus 19 ~k~~~L~~~l~~~-~~~~~~IIf~~tr~~~e~la~~L~~~-gi~~~~~hg~l~~~~R~~~~~~f~~g~~~vlVaT~tr 94 (184)
.|.......+... ..+.++|+.+|+...+.++++.|++. |.++..+||+++..+|.+...+..+|+.+|+|+|.+.
T Consensus 9 GKT~v~l~~i~~~l~~g~~vLvlvP~i~L~~Q~~~~l~~~f~~~v~vlhs~~~~~er~~~~~~~~~g~~~IVVGTrsa 86 (505)
T TIGR00595 9 GKTEVYLQAIEKVLALGKSVLVLVPEIALTPQMIQRFKYRFGSQVAVLHSGLSDSEKLQAWRKVKNGEILVVIGTRSA 86 (505)
T ss_pred CHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHHhCCcEEEEECCCCHHHHHHHHHHHHcCCCCEEECChHH
Confidence 3554444333221 14568999999999999999999864 7788999999999999998888888988888888765
No 163
>KOG4150|consensus
Probab=98.62 E-value=2.1e-07 Score=80.31 Aligned_cols=105 Identities=17% Similarity=0.227 Sum_probs=87.8
Q ss_pred CCCcEEEEeccHHHHHHHHHHHHhC----C----CeeEEecCCCCHHHHHHHHHHHhccCceEEEEEeecccHHHHHHHH
Q psy437 33 SGQSGIVYCLTRKECDSVAAALAQE----R----INAISYHAGLADKLRNEVQMKWISNKVHVGHWTVVSKECDSVAAAL 104 (184)
Q Consensus 33 ~~~~~IIf~~tr~~~e~la~~L~~~----g----i~~~~~hg~l~~~~R~~~~~~f~~g~~~vlVaT~tr~~~e~~a~gL 104 (184)
.+-.+|-||++|+.||-+....++. + -.+..|.||-+.++|.++......|....||+|+ .+.-|+
T Consensus 524 ~~~R~IAFC~~R~~CEL~~~~~R~I~~ET~~~LV~~i~SYRGGY~A~DRRKIE~~~F~G~L~giIaTN------ALELGI 597 (1034)
T KOG4150|consen 524 HGLRCIAFCPSRKLCELVLCLTREILAETAPHLVEAITSYRGGYIAEDRRKIESDLFGGKLCGIIATN------ALELGI 597 (1034)
T ss_pred cCCcEEEeccHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhcCccchhhHHHHHHHhhCCeeeEEEecc------hhhhcc
Confidence 5678999999999999876655431 1 1356799999999999999999999999999999 556688
Q ss_pred HhcCCcEEEeeCCCChHHHHHHHHHhhCC-----CceEEEEEecC
Q psy437 105 AQERINAISYHAGLADKLRNEVQMKWISN-----KVHLYNVWKIQ 144 (184)
Q Consensus 105 ~~~gi~~~vih~~~p~~~r~~~~~~f~~~-----~~~v~va~D~~ 144 (184)
|+-+++ .|+|.|+|.+.-+..|+..+.| ++.++||++-|
T Consensus 598 DIG~LD-AVl~~GFP~S~aNl~QQ~GRAGRRNk~SLavyva~~~P 641 (1034)
T KOG4150|consen 598 DIGHLD-AVLHLGFPGSIANLWQQAGRAGRRNKPSLAVYVAFLGP 641 (1034)
T ss_pred ccccce-eEEEccCchhHHHHHHHhccccccCCCceEEEEEeccc
Confidence 999999 9999999999999999986655 46888885444
No 164
>KOG0348|consensus
Probab=98.62 E-value=1.4e-07 Score=80.71 Aligned_cols=104 Identities=13% Similarity=0.131 Sum_probs=79.4
Q ss_pred HHHHHHHHHHHhccC------ceEEEEEeecccHHHHHHHHH----h------------------cCCcEEEeeCCCChH
Q psy437 70 DKLRNEVQMKWISNK------VHVGHWTVVSKECDSVAAALA----Q------------------ERINAISYHAGLADK 121 (184)
Q Consensus 70 ~~~R~~~~~~f~~g~------~~vlVaT~tr~~~e~~a~gL~----~------------------~gi~~~vih~~~p~~ 121 (184)
++-|.-.+-.|+... .++||+-++...||-=...+. . .+.+.+-+||+|.|.
T Consensus 405 pKLRLV~Laa~L~~~~k~~~~qk~iVF~S~~d~VeFHy~lf~~~l~~~~e~~s~~~~s~g~~~l~~~~k~~rLHGsm~Qe 484 (708)
T KOG0348|consen 405 PKLRLVALAALLLNKVKFEEKQKMIVFFSCSDSVEFHYSLFSEALLSHLEGSSGAPDSEGLPPLFMDLKFYRLHGSMEQE 484 (708)
T ss_pred CchhHHHHHHHHHHHhhhhhhceeEEEEechhHHHHHHHHHHhhhhcccccccCCcccCCChhhhhcceEEEecCchhHH
Confidence 455666666665432 367888888866554333221 1 123357899999999
Q ss_pred HHHHHHHHhhCCCceEEEE-------EecCCccEEEecCCCCCccccccccccc-cCCcc
Q psy437 122 LRNEVQMKWISNKVHLYNV-------WKIQWKRIIWIHSLVLIKPDYLPPILDL-RLGRE 173 (184)
Q Consensus 122 ~r~~~~~~f~~~~~~v~va-------~D~~~vr~v~~~~~p~~~e~y~~~i~~~-~~~r~ 173 (184)
.|+-+.+.|....--|+.+ +|.|+|++|+.||.|.+..+|+|||+++ |+|+.
T Consensus 485 eRts~f~~Fs~~~~~VLLcTDVAaRGLDlP~V~~vVQYd~P~s~adylHRvGRTARaG~k 544 (708)
T KOG0348|consen 485 ERTSVFQEFSHSRRAVLLCTDVAARGLDLPHVGLVVQYDPPFSTADYLHRVGRTARAGEK 544 (708)
T ss_pred HHHHHHHhhccccceEEEehhhhhccCCCCCcCeEEEeCCCCCHHHHHHHhhhhhhccCC
Confidence 9999999999877777777 6999999999999999999999999986 88875
No 165
>PRK12906 secA preprotein translocase subunit SecA; Reviewed
Probab=98.62 E-value=1e-07 Score=85.83 Aligned_cols=87 Identities=13% Similarity=-0.095 Sum_probs=77.7
Q ss_pred cCceEEEEEeecccHHHHHHHHHhcCCcEEEeeCCCChHHHHHHHHHhhCCCceEEEE-------Eec---CCcc-----
Q psy437 83 NKVHVGHWTVVSKECDSVAAALAQERINAISYHAGLADKLRNEVQMKWISNKVHLYNV-------WKI---QWKR----- 147 (184)
Q Consensus 83 g~~~vlVaT~tr~~~e~~a~gL~~~gi~~~vih~~~p~~~r~~~~~~f~~~~~~v~va-------~D~---~~vr----- 147 (184)
..-+|||.|.+...++.++..|...|+++.++|++.++..+..+.+.++.|. |+|| .|+ ++|.
T Consensus 439 ~g~pvLI~t~si~~se~ls~~L~~~gi~~~~Lna~~~~~Ea~ii~~ag~~g~--VtIATnmAGRGtDI~l~~~V~~~GGL 516 (796)
T PRK12906 439 KGQPVLVGTVAIESSERLSHLLDEAGIPHAVLNAKNHAKEAEIIMNAGQRGA--VTIATNMAGRGTDIKLGPGVKELGGL 516 (796)
T ss_pred CCCCEEEEeCcHHHHHHHHHHHHHCCCCeeEecCCcHHHHHHHHHhcCCCce--EEEEeccccCCCCCCCCcchhhhCCc
Confidence 4568999999999999999999999999999999999999999999998887 5555 499 4899
Q ss_pred EEEecCCCCCccccccccccccCCcc
Q psy437 148 IIWIHSLVLIKPDYLPPILDLRLGRE 173 (184)
Q Consensus 148 ~v~~~~~p~~~e~y~~~i~~~~~~r~ 173 (184)
+||++++|.+.+.|.|.++ |.||-
T Consensus 517 hVI~te~pes~ri~~Ql~G--RtGRq 540 (796)
T PRK12906 517 AVIGTERHESRRIDNQLRG--RSGRQ 540 (796)
T ss_pred EEEeeecCCcHHHHHHHhh--hhccC
Confidence 9999999999999999996 55553
No 166
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=98.62 E-value=2.4e-07 Score=78.73 Aligned_cols=110 Identities=16% Similarity=0.165 Sum_probs=91.6
Q ss_pred eEEecCCCCHHHHHHHHHHH-hccCceEEEEEeecccHHHHHHHHHhcCCcEE-Ee--------eCCCChHHHHHHHHHh
Q psy437 61 AISYHAGLADKLRNEVQMKW-ISNKVHVGHWTVVSKECDSVAAALAQERINAI-SY--------HAGLADKLRNEVQMKW 130 (184)
Q Consensus 61 ~~~~hg~l~~~~R~~~~~~f-~~g~~~vlVaT~tr~~~e~~a~gL~~~gi~~~-vi--------h~~~p~~~r~~~~~~f 130 (184)
..+-|..|. ..+..+.+.| +++..+|||+|.-|..+|.++..|...|+.+. .+ .-||.|.....+...|
T Consensus 343 ~~v~HPKl~-~l~eilke~~~k~~~~RvIVFT~yRdTae~i~~~L~~~~~~~~~rFiGQa~r~~~~GMsQkeQ~eiI~~F 421 (542)
T COG1111 343 SGVEHPKLE-KLREILKEQLEKNGDSRVIVFTEYRDTAEEIVNFLKKIGIKARVRFIGQASREGDKGMSQKEQKEIIDQF 421 (542)
T ss_pred ccCCCccHH-HHHHHHHHHHhcCCCceEEEEehhHhHHHHHHHHHHhcCCcceeEEeeccccccccccCHHHHHHHHHHH
Confidence 444566664 3456666677 35678999999999999999999999988853 22 2469999999999999
Q ss_pred hCCCceEEEE-------EecCCccEEEecCCCCCccccccccccccCCcc
Q psy437 131 ISNKVHLYNV-------WKIQWKRIIWIHSLVLIKPDYLPPILDLRLGRE 173 (184)
Q Consensus 131 ~~~~~~v~va-------~D~~~vr~v~~~~~p~~~e~y~~~i~~~~~~r~ 173 (184)
+.|...|+|| +|+|++..|+-|+...|+--++||.+ |-||.
T Consensus 422 r~Ge~nVLVaTSVgEEGLDIp~vDlVifYEpvpSeIR~IQR~G--RTGR~ 469 (542)
T COG1111 422 RKGEYNVLVATSVGEEGLDIPEVDLVIFYEPVPSEIRSIQRKG--RTGRK 469 (542)
T ss_pred hcCCceEEEEcccccccCCCCcccEEEEecCCcHHHHHHHhhC--ccccC
Confidence 9999999999 69999999999999999999999984 66665
No 167
>PRK13107 preprotein translocase subunit SecA; Reviewed
Probab=98.60 E-value=2e-07 Score=84.59 Aligned_cols=95 Identities=17% Similarity=0.140 Sum_probs=75.9
Q ss_pred CCCCCCeEEEE-----EEccChHHHHHHHHHhh-cCCCcEEEEeccHHHHHHHHHHHHhCCCeeEEecCCCCHHHHHHHH
Q psy437 4 SFNRANLKYEI-----LPKKNVLKEVISLIKAK-YSGQSGIVYCLTRKECDSVAAALAQERINAISYHAGLADKLRNEVQ 77 (184)
Q Consensus 4 s~~R~Nl~y~v-----~~~~~k~~~L~~~l~~~-~~~~~~IIf~~tr~~~e~la~~L~~~gi~~~~~hg~l~~~~R~~~~ 77 (184)
|.+||.+.-.. .....|...+++.+.+. ..+.|+||||.|...++.++..|...|+++.++||++++.++..+.
T Consensus 413 PTnkp~~R~d~~d~iy~t~~~K~~Aii~ei~~~~~~GrpVLV~t~sv~~se~ls~~L~~~gi~~~vLnak~~~~Ea~ii~ 492 (908)
T PRK13107 413 PTNRPMVRKDMADLVYLTADEKYQAIIKDIKDCRERGQPVLVGTVSIEQSELLARLMVKEKIPHEVLNAKFHEREAEIVA 492 (908)
T ss_pred CCCCCccceeCCCcEEeCHHHHHHHHHHHHHHHHHcCCCEEEEeCcHHHHHHHHHHHHHCCCCeEeccCcccHHHHHHHH
Confidence 56667654221 12235788887777543 3678899999999999999999999999999999999999999999
Q ss_pred HHHhccCceEEEEEeecccHHHHHHHHHh
Q psy437 78 MKWISNKVHVGHWTVVSKECDSVAAALAQ 106 (184)
Q Consensus 78 ~~f~~g~~~vlVaT~tr~~~e~~a~gL~~ 106 (184)
+.|+.|. |+|||+ .++||.|+
T Consensus 493 ~Ag~~G~--VtIATn------mAGRGTDI 513 (908)
T PRK13107 493 QAGRTGA--VTIATN------MAGRGTDI 513 (908)
T ss_pred hCCCCCc--EEEecC------CcCCCcce
Confidence 9999988 899999 44555543
No 168
>TIGR03714 secA2 accessory Sec system translocase SecA2. Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii.
Probab=98.60 E-value=2e-07 Score=83.69 Aligned_cols=87 Identities=16% Similarity=-0.063 Sum_probs=75.4
Q ss_pred CceEEEEEeecccHHHHHHHHHhcCCcEEEeeCCCChHHHHHHHHHhhCCCceEEEE-------EecC---------Ccc
Q psy437 84 KVHVGHWTVVSKECDSVAAALAQERINAISYHAGLADKLRNEVQMKWISNKVHLYNV-------WKIQ---------WKR 147 (184)
Q Consensus 84 ~~~vlVaT~tr~~~e~~a~gL~~~gi~~~vih~~~p~~~r~~~~~~f~~~~~~v~va-------~D~~---------~vr 147 (184)
.-++||+|.+...++.++..|...|+++.++|+++.+..+..+.+.|..| .|++| .|++ ++.
T Consensus 424 ~~pvLIft~s~~~se~ls~~L~~~gi~~~~L~a~~~~~E~~ii~~ag~~g--~VlIATdmAgRGtDI~l~~~v~~~GGL~ 501 (762)
T TIGR03714 424 GQPVLLITGSVEMSEIYSELLLREGIPHNLLNAQNAAKEAQIIAEAGQKG--AVTVATSMAGRGTDIKLGKGVAELGGLA 501 (762)
T ss_pred CCCEEEEECcHHHHHHHHHHHHHCCCCEEEecCCChHHHHHHHHHcCCCC--eEEEEccccccccCCCCCccccccCCeE
Confidence 45899999999999999999999999999999999999998888877777 56676 5999 999
Q ss_pred EEEecCCCCCcccccccccc-ccCCcc
Q psy437 148 IIWIHSLVLIKPDYLPPILD-LRLGRE 173 (184)
Q Consensus 148 ~v~~~~~p~~~e~y~~~i~~-~~~~r~ 173 (184)
.|+++++|....+ .|++++ +|.|..
T Consensus 502 vIit~~~ps~rid-~qr~GRtGRqG~~ 527 (762)
T TIGR03714 502 VIGTERMENSRVD-LQLRGRSGRQGDP 527 (762)
T ss_pred EEEecCCCCcHHH-HHhhhcccCCCCc
Confidence 9999999998877 999965 355544
No 169
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=98.60 E-value=4.4e-07 Score=85.56 Aligned_cols=136 Identities=10% Similarity=-0.007 Sum_probs=94.4
Q ss_pred CCCcEEEEeccHHHHHHHHHHHHhC--------CCeeEEecCCCCHH------HHH----HHHHH-HhccCceEEEEEee
Q psy437 33 SGQSGIVYCLTRKECDSVAAALAQE--------RINAISYHAGLADK------LRN----EVQMK-WISNKVHVGHWTVV 93 (184)
Q Consensus 33 ~~~~~IIf~~tr~~~e~la~~L~~~--------gi~~~~~hg~l~~~------~R~----~~~~~-f~~g~~~vlVaT~t 93 (184)
+.-+.|++..|-. ++.+++.+... .+++..++..+... +.. ..+.. ...+..+|||++++
T Consensus 210 pdLKlIlmSATld-~~~fa~~F~~apvI~V~Gr~~PVev~Y~~~~~~~~~~~~~~~~~i~~~I~~l~~~~~GdILVFLpg 288 (1283)
T TIGR01967 210 PDLKIIITSATID-PERFSRHFNNAPIIEVSGRTYPVEVRYRPLVEEQEDDDLDQLEAILDAVDELFAEGPGDILIFLPG 288 (1283)
T ss_pred CCCeEEEEeCCcC-HHHHHHHhcCCCEEEECCCcccceeEEecccccccchhhhHHHHHHHHHHHHHhhCCCCEEEeCCC
Confidence 4456788888875 57788877532 23344444322210 111 11222 22355689999999
Q ss_pred cccHHHHHHHHHhcC---CcEEEeeCCCChHHHHHHHHHhhCCCceEEEE-------EecCCccEEEecCCCC-------
Q psy437 94 SKECDSVAAALAQER---INAISYHAGLADKLRNEVQMKWISNKVHLYNV-------WKIQWKRIIWIHSLVL------- 156 (184)
Q Consensus 94 r~~~e~~a~gL~~~g---i~~~vih~~~p~~~r~~~~~~f~~~~~~v~va-------~D~~~vr~v~~~~~p~------- 156 (184)
+++++.++..|...+ +.+..+|+++|+..+..+.+.+ +..+|++| +|+|+|++||++++++
T Consensus 289 ~~EI~~l~~~L~~~~~~~~~VlpLhg~Ls~~eQ~~vf~~~--~~rkIVLATNIAEtSLTIpgV~yVIDsGl~r~~~yd~~ 366 (1283)
T TIGR01967 289 EREIRDAAEILRKRNLRHTEILPLYARLSNKEQQRVFQPH--SGRRIVLATNVAETSLTVPGIHYVIDTGTARISRYSYR 366 (1283)
T ss_pred HHHHHHHHHHHHhcCCCCcEEEeccCCCCHHHHHHHhCCC--CCceEEEeccHHHhccccCCeeEEEeCCCccccccccc
Confidence 999999999997654 4567899999999998774443 23588888 6999999999998654
Q ss_pred -----------CccccccccccccCCcc
Q psy437 157 -----------IKPDYLPPILDLRLGRE 173 (184)
Q Consensus 157 -----------~~e~y~~~i~~~~~~r~ 173 (184)
|..+|.||. +|+||.
T Consensus 367 ~~~~~L~~~~ISkasa~QRa--GRAGR~ 392 (1283)
T TIGR01967 367 TKVQRLPIEPISQASANQRK--GRCGRV 392 (1283)
T ss_pred cCccccCCccCCHHHHHHHh--hhhCCC
Confidence 456899998 588885
No 170
>KOG0329|consensus
Probab=98.59 E-value=5.8e-07 Score=70.75 Aligned_cols=130 Identities=21% Similarity=0.299 Sum_probs=91.9
Q ss_pred cEEEEeccHHHHHHHHHHHHh-----CCCeeEEecCCCCHHHHHHHHHHHhccCceEEEEEeec----------------
Q psy437 36 SGIVYCLTRKECDSVAAALAQ-----ERINAISYHAGLADKLRNEVQMKWISNKVHVGHWTVVS---------------- 94 (184)
Q Consensus 36 ~~IIf~~tr~~~e~la~~L~~-----~gi~~~~~hg~l~~~~R~~~~~~f~~g~~~vlVaT~tr---------------- 94 (184)
+.+|.|.||+.|=++.+.... .+.+++++.||++-+.-++++.. --.|+|+|++|
T Consensus 112 svlvmchtrelafqi~~ey~rfskymP~vkvaVFfGG~~Ikkdee~lk~----~PhivVgTPGrilALvr~k~l~lk~vk 187 (387)
T KOG0329|consen 112 SVLVMCHTRELAFQISKEYERFSKYMPSVKVSVFFGGLFIKKDEELLKN----CPHIVVGTPGRILALVRNRSLNLKNVK 187 (387)
T ss_pred EEEEEeccHHHHHHHHHHHHHHHhhCCCceEEEEEcceeccccHHHHhC----CCeEEEcCcHHHHHHHHhccCchhhcc
Confidence 468899999999998876653 47899999999987665555544 55799999998
Q ss_pred ----ccHHHHHHHHHh------------cCCcEEEeeCCCChHHHHHHHHHhhCC-------------------------
Q psy437 95 ----KECDSVAAALAQ------------ERINAISYHAGLADKLRNEVQMKWISN------------------------- 133 (184)
Q Consensus 95 ----~~~e~~a~gL~~------------~gi~~~vih~~~p~~~r~~~~~~f~~~------------------------- 133 (184)
.+|+.+-..||- ++-.+..+.+-++++.|.--+ .|+.+
T Consensus 188 hFvlDEcdkmle~lDMrRDvQEifr~tp~~KQvmmfsatlskeiRpvC~-kFmQdPmEi~vDdE~KLtLHGLqQ~YvkLk 266 (387)
T KOG0329|consen 188 HFVLDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCH-KFMQDPMEIFVDDEAKLTLHGLQQYYVKLK 266 (387)
T ss_pred eeehhhHHHHHHHHHHHHHHHHHhhcCcccceeeeeeeecchhhHHHHH-hhhcCchhhhccchhhhhhhhHHHHHHhhh
Confidence 467777666642 122245667777777664222 22211
Q ss_pred ------------------CceE-------------EEE-------EecCCccEEEecCCCCCccccccccccccCCc
Q psy437 134 ------------------KVHL-------------YNV-------WKIQWKRIIWIHSLVLIKPDYLPPILDLRLGR 172 (184)
Q Consensus 134 ------------------~~~v-------------~va-------~D~~~vr~v~~~~~p~~~e~y~~~i~~~~~~r 172 (184)
.+-| +|| .|+..+..|+|||+|.+++.|+|++. |+||
T Consensus 267 e~eKNrkl~dLLd~LeFNQVvIFvKsv~Rl~f~kr~vat~lfgrgmdiervNi~~NYdmp~~~DtYlHrv~--rAgr 341 (387)
T KOG0329|consen 267 ENEKNRKLNDLLDVLEFNQVVIFVKSVQRLSFQKRLVATDLFGRGMDIERVNIVFNYDMPEDSDTYLHRVA--RAGR 341 (387)
T ss_pred hhhhhhhhhhhhhhhhhcceeEeeehhhhhhhhhhhHHhhhhccccCcccceeeeccCCCCCchHHHHHhh--hhhc
Confidence 1111 233 49999999999999999999999995 6666
No 171
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=98.59 E-value=2.7e-07 Score=87.04 Aligned_cols=69 Identities=13% Similarity=0.158 Sum_probs=63.7
Q ss_pred ceEEEEEeec---ccHHHHHHHHHhcCCcEEEeeCCCChHHHHHHHHHhhCCCceEEEE-----------EecCC-ccEE
Q psy437 85 VHVGHWTVVS---KECDSVAAALAQERINAISYHAGLADKLRNEVQMKWISNKVHLYNV-----------WKIQW-KRII 149 (184)
Q Consensus 85 ~~vlVaT~tr---~~~e~~a~gL~~~gi~~~vih~~~p~~~r~~~~~~f~~~~~~v~va-----------~D~~~-vr~v 149 (184)
.++||+++++ ..|+.++..|...|+++..+|+++++ ...+.|++|++.|+|+ +|+|+ |++|
T Consensus 327 ~~~IVFv~t~~~~~~a~~l~~~L~~~g~~a~~lhg~~~~----~~l~~Fr~G~~~vLVata~~tdv~aRGIDip~~V~~v 402 (1171)
T TIGR01054 327 TGGIVYVSIDYGKEKAEEIAEFLENHGVKAVAYHATKPK----EDYEKFAEGEIDVLIGVASYYGTLVRGLDLPERVRYA 402 (1171)
T ss_pred CCEEEEEeccccHHHHHHHHHHHHhCCceEEEEeCCCCH----HHHHHHHcCCCCEEEEeccccCcccccCCCCccccEE
Confidence 5789999999 99999999999999999999999984 5789999999999998 49999 8999
Q ss_pred EecCCCCC
Q psy437 150 WIHSLVLI 157 (184)
Q Consensus 150 ~~~~~p~~ 157 (184)
|++++|+.
T Consensus 403 I~~~~P~~ 410 (1171)
T TIGR01054 403 VFLGVPKF 410 (1171)
T ss_pred EEECCCCE
Confidence 99999985
No 172
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=98.59 E-value=2.7e-07 Score=82.53 Aligned_cols=90 Identities=11% Similarity=-0.103 Sum_probs=79.0
Q ss_pred ccCceEEEEEeecccHHHHHHHHHhcCCcEEEeeCCCChHHHHHHHHHhhCCCceEEEE-------EecCC--c-----c
Q psy437 82 SNKVHVGHWTVVSKECDSVAAALAQERINAISYHAGLADKLRNEVQMKWISNKVHLYNV-------WKIQW--K-----R 147 (184)
Q Consensus 82 ~g~~~vlVaT~tr~~~e~~a~gL~~~gi~~~vih~~~p~~~r~~~~~~f~~~~~~v~va-------~D~~~--v-----r 147 (184)
...-+|||.|.+...+|.++..|...|+++.++|++ +..|+...-.|.++...|+|| .|++. | -
T Consensus 403 ~~grpvLV~t~si~~se~ls~~L~~~gi~~~~Lna~--q~~rEa~ii~~ag~~g~VtIATnmAgRGtDI~l~~V~~~GGl 480 (745)
T TIGR00963 403 AKGQPVLVGTTSVEKSELLSNLLKERGIPHNVLNAK--NHEREAEIIAQAGRKGAVTIATNMAGRGTDIKLEEVKELGGL 480 (745)
T ss_pred hcCCCEEEEeCcHHHHHHHHHHHHHcCCCeEEeeCC--hHHHHHHHHHhcCCCceEEEEeccccCCcCCCccchhhcCCc
Confidence 345579999999999999999999999999999999 888888899999999999999 49988 4 4
Q ss_pred EEEecCCCCCcccccccccc-ccCCcc
Q psy437 148 IIWIHSLVLIKPDYLPPILD-LRLGRE 173 (184)
Q Consensus 148 ~v~~~~~p~~~e~y~~~i~~-~~~~r~ 173 (184)
+||++++|.+...|.|++++ +|.|..
T Consensus 481 ~VI~t~~p~s~ri~~q~~GRtGRqG~~ 507 (745)
T TIGR00963 481 YVIGTERHESRRIDNQLRGRSGRQGDP 507 (745)
T ss_pred EEEecCCCCcHHHHHHHhccccCCCCC
Confidence 99999999999999999964 244443
No 173
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=98.57 E-value=2.2e-06 Score=71.45 Aligned_cols=77 Identities=12% Similarity=-0.006 Sum_probs=63.5
Q ss_pred CceEEEEEeecccHHHHHHHHHhcC--CcEEEeeCCCChHHHHHHHHHhhCCCceEEEE-------EecCCccEEEecCC
Q psy437 84 KVHVGHWTVVSKECDSVAAALAQER--INAISYHAGLADKLRNEVQMKWISNKVHLYNV-------WKIQWKRIIWIHSL 154 (184)
Q Consensus 84 ~~~vlVaT~tr~~~e~~a~gL~~~g--i~~~vih~~~p~~~r~~~~~~f~~~~~~v~va-------~D~~~vr~v~~~~~ 154 (184)
..++||++++++.|+.++..|...+ +.+..+|++++++.|... ++..++|| +|++.+ +|+ ++
T Consensus 272 ~~k~LIf~nt~~~~~~l~~~L~~~~~~~~~~~l~g~~~~~~R~~~------~~~~iLVaTdv~~rGiDi~~~-~vi-~~- 342 (357)
T TIGR03158 272 GERGAIILDSLDEVNRLSDLLQQQGLGDDIGRITGFAPKKDRERA------MQFDILLGTSTVDVGVDFKRD-WLI-FS- 342 (357)
T ss_pred CCeEEEEECCHHHHHHHHHHHhhhCCCceEEeeecCCCHHHHHHh------ccCCEEEEecHHhcccCCCCc-eEE-EC-
Confidence 3579999999999999999998764 567789999999988643 36788888 699987 666 45
Q ss_pred CCCccccccccccccCC
Q psy437 155 VLIKPDYLPPILDLRLG 171 (184)
Q Consensus 155 p~~~e~y~~~i~~~~~~ 171 (184)
|.+.++|+||++ |+|
T Consensus 343 p~~~~~yiqR~G--R~g 357 (357)
T TIGR03158 343 ARDAAAFWQRLG--RLG 357 (357)
T ss_pred CCCHHHHhhhcc--cCC
Confidence 999999999994 554
No 174
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=98.54 E-value=4e-06 Score=77.57 Aligned_cols=141 Identities=15% Similarity=0.076 Sum_probs=117.0
Q ss_pred cCCCcEEEEeccHHHHHHHHHHHHhC----CCeeEEecCCCCHHHHHHHHHHHhccCceEEEEEeec-------------
Q psy437 32 YSGQSGIVYCLTRKECDSVAAALAQE----RINAISYHAGLADKLRNEVQMKWISNKVHVGHWTVVS------------- 94 (184)
Q Consensus 32 ~~~~~~IIf~~tr~~~e~la~~L~~~----gi~~~~~hg~l~~~~R~~~~~~f~~g~~~vlVaT~tr------------- 94 (184)
..+.++.|.+||.=.|++-.+.|.++ .+++..+..=.+.++...+++...+|++.|||.|-.-
T Consensus 641 ~~GKQVAvLVPTTlLA~QHy~tFkeRF~~fPV~I~~LSRF~s~kE~~~il~~la~G~vDIvIGTHrLL~kdv~FkdLGLl 720 (1139)
T COG1197 641 MDGKQVAVLVPTTLLAQQHYETFKERFAGFPVRIEVLSRFRSAKEQKEILKGLAEGKVDIVIGTHRLLSKDVKFKDLGLL 720 (1139)
T ss_pred cCCCeEEEEcccHHhHHHHHHHHHHHhcCCCeeEEEecccCCHHHHHHHHHHHhcCCccEEEechHhhCCCcEEecCCeE
Confidence 36788999999999999988888764 4556667766778999999999999999999998644
Q ss_pred --------------------------------------------------------------------------------
Q psy437 95 -------------------------------------------------------------------------------- 94 (184)
Q Consensus 95 -------------------------------------------------------------------------------- 94 (184)
T Consensus 721 IIDEEqRFGVk~KEkLK~Lr~~VDvLTLSATPIPRTL~Msm~GiRdlSvI~TPP~~R~pV~T~V~~~d~~~ireAI~REl 800 (1139)
T COG1197 721 IIDEEQRFGVKHKEKLKELRANVDVLTLSATPIPRTLNMSLSGIRDLSVIATPPEDRLPVKTFVSEYDDLLIREAILREL 800 (1139)
T ss_pred EEechhhcCccHHHHHHHHhccCcEEEeeCCCCcchHHHHHhcchhhhhccCCCCCCcceEEEEecCChHHHHHHHHHHH
Confidence
Q ss_pred -------------ccHHHHHHHHH--hcCCcEEEeeCCCChHHHHHHHHHhhCCCceEEEE-------EecCCccEEEec
Q psy437 95 -------------KECDSVAAALA--QERINAISYHAGLADKLRNEVQMKWISNKVHLYNV-------WKIQWKRIIWIH 152 (184)
Q Consensus 95 -------------~~~e~~a~gL~--~~gi~~~vih~~~p~~~r~~~~~~f~~~~~~v~va-------~D~~~vr~v~~~ 152 (184)
...+.++..|. .|..+..|.||.|+...-+.++..|-.|+..|+|+ +|+|+...+|..
T Consensus 801 ~RgGQvfYv~NrV~~Ie~~~~~L~~LVPEarI~vaHGQM~e~eLE~vM~~F~~g~~dVLv~TTIIEtGIDIPnANTiIIe 880 (1139)
T COG1197 801 LRGGQVFYVHNRVESIEKKAERLRELVPEARIAVAHGQMRERELEEVMLDFYNGEYDVLVCTTIIETGIDIPNANTIIIE 880 (1139)
T ss_pred hcCCEEEEEecchhhHHHHHHHHHHhCCceEEEEeecCCCHHHHHHHHHHHHcCCCCEEEEeeeeecCcCCCCCceEEEe
Confidence 46777788884 57888899999999999999999999999999999 599999999866
Q ss_pred CCCCCccccccccccccCCcc
Q psy437 153 SLVLIKPDYLPPILDLRLGRE 173 (184)
Q Consensus 153 ~~p~~~e~y~~~i~~~~~~r~ 173 (184)
+-=+-=-+.++. |++|+||-
T Consensus 881 ~AD~fGLsQLyQ-LRGRVGRS 900 (1139)
T COG1197 881 RADKFGLAQLYQ-LRGRVGRS 900 (1139)
T ss_pred ccccccHHHHHH-hccccCCc
Confidence 544444445554 47999995
No 175
>TIGR00603 rad25 DNA repair helicase rad25. All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.50 E-value=4.7e-07 Score=81.20 Aligned_cols=84 Identities=11% Similarity=-0.041 Sum_probs=71.8
Q ss_pred cCceEEEEEeecccHHHHHHHHHhcCCcEEEeeCCCChHHHHHHHHHhhCC-CceEEEE-------EecCCccEEEecCC
Q psy437 83 NKVHVGHWTVVSKECDSVAAALAQERINAISYHAGLADKLRNEVQMKWISN-KVHLYNV-------WKIQWKRIIWIHSL 154 (184)
Q Consensus 83 g~~~vlVaT~tr~~~e~~a~gL~~~gi~~~vih~~~p~~~r~~~~~~f~~~-~~~v~va-------~D~~~vr~v~~~~~ 154 (184)
..-++||+|+....++.++..|. +.++||++|+..|..+.+.|++| .+.++++ +|+|+++.||+++.
T Consensus 495 ~g~kiLVF~~~~~~l~~~a~~L~-----~~~I~G~ts~~ER~~il~~Fr~~~~i~vLv~SkVgdeGIDlP~a~vvI~~s~ 569 (732)
T TIGR00603 495 RGDKIIVFSDNVFALKEYAIKLG-----KPFIYGPTSQQERMQILQNFQHNPKVNTIFLSKVGDTSIDLPEANVLIQISS 569 (732)
T ss_pred cCCeEEEEeCCHHHHHHHHHHcC-----CceEECCCCHHHHHHHHHHHHhCCCccEEEEecccccccCCCCCCEEEEeCC
Confidence 44589999999889999999883 35689999999999999999865 7788877 69999999999999
Q ss_pred C-CCcccccccccc-ccCC
Q psy437 155 V-LIKPDYLPPILD-LRLG 171 (184)
Q Consensus 155 p-~~~e~y~~~i~~-~~~~ 171 (184)
| .+...|+||++| +|.+
T Consensus 570 ~~gS~~q~iQRlGRilR~~ 588 (732)
T TIGR00603 570 HYGSRRQEAQRLGRILRAK 588 (732)
T ss_pred CCCCHHHHHHHhcccccCC
Confidence 8 599999999965 2444
No 176
>KOG0337|consensus
Probab=98.47 E-value=2.4e-06 Score=71.32 Aligned_cols=104 Identities=10% Similarity=0.071 Sum_probs=93.0
Q ss_pred HHHHHHHHHHHhccCce---EEEEEeecccHHHHHHHHHhcCCcEEEeeCCCChHHHHHHHHHhhCCCceEEEE------
Q psy437 70 DKLRNEVQMKWISNKVH---VGHWTVVSKECDSVAAALAQERINAISYHAGLADKLRNEVQMKWISNKVHLYNV------ 140 (184)
Q Consensus 70 ~~~R~~~~~~f~~g~~~---vlVaT~tr~~~e~~a~gL~~~gi~~~vih~~~p~~~r~~~~~~f~~~~~~v~va------ 140 (184)
+++|...+...+.+.+. -+|+..+++.+|-+..+|...|+.+..+-+.+.+..|..--+.|+.++..++|.
T Consensus 244 ~a~K~aaLl~il~~~~~~~~t~vf~~tk~hve~~~~ll~~~g~~~s~iysslD~~aRk~~~~~F~~~k~~~lvvTdvaaR 323 (529)
T KOG0337|consen 244 KAEKEAALLSILGGRIKDKQTIVFVATKHHVEYVRGLLRDFGGEGSDIYSSLDQEARKINGRDFRGRKTSILVVTDVAAR 323 (529)
T ss_pred cHHHHHHHHHHHhccccccceeEEecccchHHHHHHHHHhcCCCccccccccChHhhhhccccccCCccceEEEehhhhc
Confidence 46777888887776654 899999999999999999999999888999999999999999999999888887
Q ss_pred -EecCCccEEEecCCCCCccccccccccc-cCCcc
Q psy437 141 -WKIQWKRIIWIHSLVLIKPDYLPPILDL-RLGRE 173 (184)
Q Consensus 141 -~D~~~vr~v~~~~~p~~~e~y~~~i~~~-~~~r~ 173 (184)
.|+|....|+|||.|.+..-++||+++. |+||.
T Consensus 324 G~diplldnvinyd~p~~~klFvhRVgr~aragrt 358 (529)
T KOG0337|consen 324 GLDIPLLDNVINYDFPPDDKLFVHRVGRVARAGRT 358 (529)
T ss_pred cCCCccccccccccCCCCCceEEEEecchhhcccc
Confidence 5999999999999999999999999885 77774
No 177
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.47 E-value=9.3e-07 Score=76.90 Aligned_cols=88 Identities=10% Similarity=0.023 Sum_probs=70.8
Q ss_pred HHHHHHHHHhC--CCeeEEecCCCCHHHH--HHHHHHHhccCceEEEEEeecccHHHHHHHHHhcCCc-EEEeeCCC---
Q psy437 47 CDSVAAALAQE--RINAISYHAGLADKLR--NEVQMKWISNKVHVGHWTVVSKECDSVAAALAQERIN-AISYHAGL--- 118 (184)
Q Consensus 47 ~e~la~~L~~~--gi~~~~~hg~l~~~~R--~~~~~~f~~g~~~vlVaT~tr~~~e~~a~gL~~~gi~-~~vih~~~--- 118 (184)
++.+.+.|.+. +.++..+|+++++.++ ..++++|.+|+.+|||+|. .+++|+|.+++. +.|+++|.
T Consensus 271 te~~~e~l~~~fp~~~v~~~d~d~~~~~~~~~~~l~~f~~g~~~ILVgT~------~i~kG~d~~~v~lV~vl~aD~~l~ 344 (505)
T TIGR00595 271 TEQVEEELAKLFPGARIARIDSDTTSRKGAHEALLNQFANGKADILIGTQ------MIAKGHHFPNVTLVGVLDADSGLH 344 (505)
T ss_pred HHHHHHHHHhhCCCCcEEEEecccccCccHHHHHHHHHhcCCCCEEEeCc------ccccCCCCCcccEEEEEcCccccc
Confidence 58888888876 7889999999987665 8999999999999999999 899999999999 34588886
Q ss_pred -Ch------HHHHHHHHHhhCCC----ceEEEE
Q psy437 119 -AD------KLRNEVQMKWISNK----VHLYNV 140 (184)
Q Consensus 119 -p~------~~r~~~~~~f~~~~----~~v~va 140 (184)
|. ....++|..++.|. ..+++-
T Consensus 345 ~pd~ra~E~~~~ll~q~~GRagR~~~~g~viiq 377 (505)
T TIGR00595 345 SPDFRAAERGFQLLTQVAGRAGRAEDPGQVIIQ 377 (505)
T ss_pred CcccchHHHHHHHHHHHHhccCCCCCCCEEEEE
Confidence 42 34667888877654 455543
No 178
>COG1204 Superfamily II helicase [General function prediction only]
Probab=98.47 E-value=1.2e-06 Score=79.37 Aligned_cols=72 Identities=25% Similarity=0.241 Sum_probs=62.3
Q ss_pred CCCcEEEEeccHHHHHHHHHHHHhC---------------------C----------------CeeEEecCCCCHHHHHH
Q psy437 33 SGQSGIVYCLTRKECDSVAAALAQE---------------------R----------------INAISYHAGLADKLRNE 75 (184)
Q Consensus 33 ~~~~~IIf~~tr~~~e~la~~L~~~---------------------g----------------i~~~~~hg~l~~~~R~~ 75 (184)
.+++++|||+||+.+...|..|... + ..+++.|+||+.++|..
T Consensus 252 ~~~qvLvFv~sR~~a~~~A~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~l~e~v~~GvafHhAGL~~~~R~~ 331 (766)
T COG1204 252 EGGQVLVFVHSRKEAEKTAKKLRIKMSATLSDDEKIVLDEGASPILIPETPTSEDEELAELVLRGVAFHHAGLPREDRQL 331 (766)
T ss_pred cCCeEEEEEecCchHHHHHHHHHHHHhhcCChhhhhhccccccccccccccccchHHHHHHHHhCccccccCCCHHHHHH
Confidence 6789999999999999999998720 0 14678999999999999
Q ss_pred HHHHHhccCceEEEEEeecccHHHHHHHHHhcCCc
Q psy437 76 VQMKWISNKVHVGHWTVVSKECDSVAAALAQERIN 110 (184)
Q Consensus 76 ~~~~f~~g~~~vlVaT~tr~~~e~~a~gL~~~gi~ 110 (184)
+.+.|+.|.++|||||+ .+|.|.+-|.-.
T Consensus 332 vE~~Fr~g~ikVlv~Tp------TLA~GVNLPA~~ 360 (766)
T COG1204 332 VEDAFRKGKIKVLVSTP------TLAAGVNLPART 360 (766)
T ss_pred HHHHHhcCCceEEEech------HHhhhcCCcceE
Confidence 99999999999999999 779997777654
No 179
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
Probab=98.44 E-value=6.6e-07 Score=81.99 Aligned_cols=95 Identities=15% Similarity=0.174 Sum_probs=82.6
Q ss_pred CCCcEEEEeccHHHHHHHH----HHHHhCC----CeeEEecCCCCHHHHHHHHHHHhccCceEEEEEeecccHHHHHHHH
Q psy437 33 SGQSGIVYCLTRKECDSVA----AALAQER----INAISYHAGLADKLRNEVQMKWISNKVHVGHWTVVSKECDSVAAAL 104 (184)
Q Consensus 33 ~~~~~IIf~~tr~~~e~la----~~L~~~g----i~~~~~hg~l~~~~R~~~~~~f~~g~~~vlVaT~tr~~~e~~a~gL 104 (184)
.+.++|+|+.+++.++.+. ..+...+ ..+..|+|++..++|.++...|+.|+..++++|+ .+--|+
T Consensus 305 ~~~~tL~F~~sr~~~e~~~~~~~~~~~~~~~~l~~~v~~~~~~~~~~er~~ie~~~~~g~~~~~~st~------Alelgi 378 (851)
T COG1205 305 NGIQTLVFFRSRKQVELLYLSPRRRLVREGGKLLDAVSTYRAGLHREERRRIEAEFKEGELLGVIATN------ALELGI 378 (851)
T ss_pred cCceEEEEEehhhhhhhhhhchhHHHhhcchhhhhheeeccccCCHHHHHHHHHHHhcCCccEEecch------hhhhce
Confidence 6789999999999999997 4444445 5688899999999999999999999999999999 445578
Q ss_pred HhcCCcEEEeeCCCCh-HHHHHHHHHhhCCC
Q psy437 105 AQERINAISYHAGLAD-KLRNEVQMKWISNK 134 (184)
Q Consensus 105 ~~~gi~~~vih~~~p~-~~r~~~~~~f~~~~ 134 (184)
|+-+++ .|++.+.|. +.-++.|+.++.|.
T Consensus 379 diG~ld-avi~~g~P~~s~~~~~Q~~GRaGR 408 (851)
T COG1205 379 DIGSLD-AVIAYGYPGVSVLSFRQRAGRAGR 408 (851)
T ss_pred eehhhh-hHhhcCCCCchHHHHHHhhhhccC
Confidence 999999 999999999 89999999876654
No 180
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=98.36 E-value=2.9e-06 Score=79.84 Aligned_cols=92 Identities=9% Similarity=0.057 Sum_probs=77.6
Q ss_pred CCCcEEEEeccHHHHHHHHHHHHhC------CC---eeEEecCCCCHHHHHHHHHHHhccCc-eEEEEEeecccHHHHHH
Q psy437 33 SGQSGIVYCLTRKECDSVAAALAQE------RI---NAISYHAGLADKLRNEVQMKWISNKV-HVGHWTVVSKECDSVAA 102 (184)
Q Consensus 33 ~~~~~IIf~~tr~~~e~la~~L~~~------gi---~~~~~hg~l~~~~R~~~~~~f~~g~~-~vlVaT~tr~~~e~~a~ 102 (184)
.+.++||||.++..|+.+++.|.+. ++ .+..++|+.+ ++..++++|+++.. .|+|+++ .+..
T Consensus 697 ~~~KtiIF~~s~~HA~~i~~~L~~~f~~~~~~~~~~~v~~itg~~~--~~~~li~~Fk~~~~p~IlVsvd------mL~T 768 (1123)
T PRK11448 697 GEGKTLIFAATDAHADMVVRLLKEAFKKKYGQVEDDAVIKITGSID--KPDQLIRRFKNERLPNIVVTVD------LLTT 768 (1123)
T ss_pred CCCcEEEEEcCHHHHHHHHHHHHHHHHhhcCCcCccceEEEeCCcc--chHHHHHHHhCCCCCeEEEEec------cccc
Confidence 3478999999999999999888653 22 4566888875 57789999999887 5788888 8899
Q ss_pred HHHhcCCcEEEeeCCCChHHHHHHHHHhhCC
Q psy437 103 ALAQERINAISYHAGLADKLRNEVQMKWISN 133 (184)
Q Consensus 103 gL~~~gi~~~vih~~~p~~~r~~~~~~f~~~ 133 (184)
|+|.|.+. .++.+..+.+...|+|...|..
T Consensus 769 G~DvP~v~-~vVf~rpvkS~~lf~QmIGRgt 798 (1123)
T PRK11448 769 GIDVPSIC-NLVFLRRVRSRILYEQMLGRAT 798 (1123)
T ss_pred CCCccccc-EEEEecCCCCHHHHHHHHhhhc
Confidence 99999999 9999999999999999997643
No 181
>PRK12900 secA preprotein translocase subunit SecA; Reviewed
Probab=98.23 E-value=3.5e-06 Score=77.20 Aligned_cols=89 Identities=15% Similarity=-0.084 Sum_probs=76.9
Q ss_pred cCceEEEEEeecccHHHHHHHHHhcCCcEEEeeCCCChHHHHHHHHHhhCCCceEEEE-------EecC---CccE----
Q psy437 83 NKVHVGHWTVVSKECDSVAAALAQERINAISYHAGLADKLRNEVQMKWISNKVHLYNV-------WKIQ---WKRI---- 148 (184)
Q Consensus 83 g~~~vlVaT~tr~~~e~~a~gL~~~gi~~~vih~~~p~~~r~~~~~~f~~~~~~v~va-------~D~~---~vr~---- 148 (184)
..-+|||+|.+...+|.+++.|...||++.++|+ .+..|+...-.|.++...|+|| .||+ .|..
T Consensus 597 ~grpVLIft~Sve~sE~Ls~~L~~~gI~h~vLna--kq~~REa~Iia~AG~~g~VtIATNMAGRGtDIkl~~~V~~vGGL 674 (1025)
T PRK12900 597 KGQPVLVGTASVEVSETLSRMLRAKRIAHNVLNA--KQHDREAEIVAEAGQKGAVTIATNMAGRGTDIKLGEGVRELGGL 674 (1025)
T ss_pred CCCCEEEEeCcHHHHHHHHHHHHHcCCCceeecC--CHHHhHHHHHHhcCCCCeEEEeccCcCCCCCcCCccchhhhCCc
Confidence 3458999999999999999999999999999997 6888888899999999999999 4998 5544
Q ss_pred -EEecCCCCCcccccccccc-ccCCcc
Q psy437 149 -IWIHSLVLIKPDYLPPILD-LRLGRE 173 (184)
Q Consensus 149 -v~~~~~p~~~e~y~~~i~~-~~~~r~ 173 (184)
||+.+.|.+...|.|++++ +|.|..
T Consensus 675 ~VIgterhes~Rid~Ql~GRtGRqGdp 701 (1025)
T PRK12900 675 FILGSERHESRRIDRQLRGRAGRQGDP 701 (1025)
T ss_pred eeeCCCCCchHHHHHHHhhhhhcCCCC
Confidence 4999999999999999965 355544
No 182
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
Probab=98.23 E-value=2.1e-05 Score=72.29 Aligned_cols=98 Identities=13% Similarity=0.091 Sum_probs=84.4
Q ss_pred HHHHHHhccCceEEEEEeecccHHHHH----HHHHhcC----CcEEEeeCCCChHHHHHHHHHhhCCCceEEEE------
Q psy437 75 EVQMKWISNKVHVGHWTVVSKECDSVA----AALAQER----INAISYHAGLADKLRNEVQMKWISNKVHLYNV------ 140 (184)
Q Consensus 75 ~~~~~f~~g~~~vlVaT~tr~~~e~~a----~gL~~~g----i~~~vih~~~p~~~r~~~~~~f~~~~~~v~va------ 140 (184)
.+...+..+..+.||++.+|+.+|.+. +.+...+ ..+.+++++++...|..+.+.|++|++.++++
T Consensus 297 ~~~~~~~~~~~~tL~F~~sr~~~e~~~~~~~~~~~~~~~~l~~~v~~~~~~~~~~er~~ie~~~~~g~~~~~~st~Alel 376 (851)
T COG1205 297 TLAALLVRNGIQTLVFFRSRKQVELLYLSPRRRLVREGGKLLDAVSTYRAGLHREERRRIEAEFKEGELLGVIATNALEL 376 (851)
T ss_pred HHHHHHHHcCceEEEEEehhhhhhhhhhchhHHHhhcchhhhhheeeccccCCHHHHHHHHHHHhcCCccEEecchhhhh
Confidence 445555668889999999999999997 4454555 44689999999999999999999999999998
Q ss_pred -EecCCccEEEecCCCC-CccccccccccccCCccc
Q psy437 141 -WKIQWKRIIWIHSLVL-IKPDYLPPILDLRLGRED 174 (184)
Q Consensus 141 -~D~~~vr~v~~~~~p~-~~e~y~~~i~~~~~~r~~ 174 (184)
.|+-++..|++...|. +.-++.|+. +|+||..
T Consensus 377 gidiG~ldavi~~g~P~~s~~~~~Q~~--GRaGR~~ 410 (851)
T COG1205 377 GIDIGSLDAVIAYGYPGVSVLSFRQRA--GRAGRRG 410 (851)
T ss_pred ceeehhhhhHhhcCCCCchHHHHHHhh--hhccCCC
Confidence 5999999999999999 889999998 5888864
No 183
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=98.15 E-value=0.00011 Score=67.49 Aligned_cols=84 Identities=19% Similarity=0.195 Sum_probs=64.7
Q ss_pred eEEEEEEcc--C--hHHHHHHHHHhhcCCCcEEEEeccHHHHHHHHHHHHhC----C-CeeEE-ecCCCCHHHHHHHHHH
Q psy437 10 LKYEILPKK--N--VLKEVISLIKAKYSGQSGIVYCLTRKECDSVAAALAQE----R-INAIS-YHAGLADKLRNEVQMK 79 (184)
Q Consensus 10 l~y~v~~~~--~--k~~~L~~~l~~~~~~~~~IIf~~tr~~~e~la~~L~~~----g-i~~~~-~hg~l~~~~R~~~~~~ 79 (184)
-.|++.-.. . -+-.+..+.... ++.++.+.+||...+.++++.|.+. | ..+.. |||.|+.++++..+++
T Consensus 98 ~SFaiiAPTGvGKTTfg~~~sl~~a~-kgkr~yii~PT~~Lv~Q~~~kl~~~~e~~~~~~~~~~yh~~l~~~ekee~le~ 176 (1187)
T COG1110 98 KSFAIIAPTGVGKTTFGLLMSLYLAK-KGKRVYIIVPTTTLVRQVYERLKKFAEDAGSLDVLVVYHSALPTKEKEEALER 176 (1187)
T ss_pred CceEEEcCCCCchhHHHHHHHHHHHh-cCCeEEEEecCHHHHHHHHHHHHHHHhhcCCcceeeeeccccchHHHHHHHHH
Confidence 345555332 2 345555555443 6678899999999999999988753 2 44333 9999999999999999
Q ss_pred HhccCceEEEEEeec
Q psy437 80 WISNKVHVGHWTVVS 94 (184)
Q Consensus 80 f~~g~~~vlVaT~tr 94 (184)
+.+|..+|+|.|+.+
T Consensus 177 i~~gdfdIlitTs~F 191 (1187)
T COG1110 177 IESGDFDILITTSQF 191 (1187)
T ss_pred HhcCCccEEEEeHHH
Confidence 999999999999988
No 184
>KOG0354|consensus
Probab=98.13 E-value=1.4e-05 Score=71.36 Aligned_cols=100 Identities=15% Similarity=0.102 Sum_probs=84.3
Q ss_pred HHHHHHHHHHhcc-CceEEEEEeecccHHHHHHHHH---hcCCcE--------EEeeCCCChHHHHHHHHHhhCCCceEE
Q psy437 71 KLRNEVQMKWISN-KVHVGHWTVVSKECDSVAAALA---QERINA--------ISYHAGLADKLRNEVQMKWISNKVHLY 138 (184)
Q Consensus 71 ~~R~~~~~~f~~g-~~~vlVaT~tr~~~e~~a~gL~---~~gi~~--------~vih~~~p~~~r~~~~~~f~~~~~~v~ 138 (184)
..+..+++.|..+ ..++||+|.+|..|+.+-.+|. ..||++ .....||.+..-..+...|+.|.+.|+
T Consensus 399 ~l~~~l~e~f~~~~dsR~IIFve~R~sa~~l~~~l~~~~~~~ir~~~fiGq~~s~~~~gmtqk~Q~evl~~Fr~G~~NvL 478 (746)
T KOG0354|consen 399 KLVEILVEQFEQNPDSRTIIFVETRESALALKKWLLQLHELGIKAEIFIGQGKSTQSTGMTQKEQKEVLDKFRDGEINVL 478 (746)
T ss_pred HHHHHHHHHhhcCCCccEEEEEehHHHHHHHHHHHHhhhhcccccceeeeccccccccccCHHHHHHHHHHHhCCCccEE
Confidence 4566677777754 5689999999999999999997 334553 334469999999999999999999999
Q ss_pred EE-------EecCCccEEEecCCCCCccccccccccccCCcc
Q psy437 139 NV-------WKIQWKRIIWIHSLVLIKPDYLPPILDLRLGRE 173 (184)
Q Consensus 139 va-------~D~~~vr~v~~~~~p~~~e~y~~~i~~~~~~r~ 173 (184)
|| +|++.+..||.||...++-.-+|+.+ | ||.
T Consensus 479 VATSV~EEGLDI~ec~lVIcYd~~snpIrmIQrrG--R-gRa 517 (746)
T KOG0354|consen 479 VATSVAEEGLDIGECNLVICYDYSSNPIRMVQRRG--R-GRA 517 (746)
T ss_pred EEecchhccCCcccccEEEEecCCccHHHHHHHhc--c-ccc
Confidence 99 69999999999999999999999985 5 665
No 185
>PRK05580 primosome assembly protein PriA; Validated
Probab=98.07 E-value=7.5e-06 Score=73.68 Aligned_cols=85 Identities=8% Similarity=0.001 Sum_probs=70.5
Q ss_pred HHHHHHHHHHHHhC--CCeeEEecCCCCH--HHHHHHHHHHhccCceEEEEEeecccHHHHHHHHHhcCCc-EEEeeCCC
Q psy437 44 RKECDSVAAALAQE--RINAISYHAGLAD--KLRNEVQMKWISNKVHVGHWTVVSKECDSVAAALAQERIN-AISYHAGL 118 (184)
Q Consensus 44 r~~~e~la~~L~~~--gi~~~~~hg~l~~--~~R~~~~~~f~~g~~~vlVaT~tr~~~e~~a~gL~~~gi~-~~vih~~~ 118 (184)
...++.+++.|.+. +.++..+|+++.+ +++++++++|.+|+.+|||+|. .+|+|+|.+++. +.++++|.
T Consensus 436 g~G~e~~~e~l~~~fp~~~v~~~~~d~~~~~~~~~~~l~~f~~g~~~ILVgT~------~iakG~d~p~v~lV~il~aD~ 509 (679)
T PRK05580 436 GPGTERLEEELAELFPEARILRIDRDTTRRKGALEQLLAQFARGEADILIGTQ------MLAKGHDFPNVTLVGVLDADL 509 (679)
T ss_pred eccHHHHHHHHHHhCCCCcEEEEeccccccchhHHHHHHHHhcCCCCEEEECh------hhccCCCCCCcCEEEEEcCch
Confidence 35788999999885 8889999999874 6799999999999999999999 899999999999 23488886
Q ss_pred ChH----------HHHHHHHHhhCCC
Q psy437 119 ADK----------LRNEVQMKWISNK 134 (184)
Q Consensus 119 p~~----------~r~~~~~~f~~~~ 134 (184)
+-. .+.++|..++.|.
T Consensus 510 ~l~~pdfra~Er~~~~l~q~~GRagR 535 (679)
T PRK05580 510 GLFSPDFRASERTFQLLTQVAGRAGR 535 (679)
T ss_pred hccCCccchHHHHHHHHHHHHhhccC
Confidence 643 3678888877653
No 186
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=98.06 E-value=4.1e-05 Score=71.36 Aligned_cols=104 Identities=7% Similarity=-0.057 Sum_probs=83.4
Q ss_pred ChHHHHHHHHHhh-cCCCcEEEEeccHHHHHHHHHHHHhCCCeeEEecCCCCHHHHHHHHHHHhccC---ceEEEEEeec
Q psy437 19 NVLKEVISLIKAK-YSGQSGIVYCLTRKECDSVAAALAQERINAISYHAGLADKLRNEVQMKWISNK---VHVGHWTVVS 94 (184)
Q Consensus 19 ~k~~~L~~~l~~~-~~~~~~IIf~~tr~~~e~la~~L~~~gi~~~~~hg~l~~~~R~~~~~~f~~g~---~~vlVaT~tr 94 (184)
.|+..|..+|.+. ..+.++||||......+.|...|...|++...++|+++..+|..++++|.+.. .-+|++|.
T Consensus 471 gKl~lLdkLL~~Lk~~g~KVLIFSQft~~LdiLed~L~~~g~~y~rIdGsts~~eRq~~Id~Fn~~~s~~~VfLLSTr-- 548 (1033)
T PLN03142 471 GKMVLLDKLLPKLKERDSRVLIFSQMTRLLDILEDYLMYRGYQYCRIDGNTGGEDRDASIDAFNKPGSEKFVFLLSTR-- 548 (1033)
T ss_pred hHHHHHHHHHHHHHhcCCeEEeehhHHHHHHHHHHHHHHcCCcEEEECCCCCHHHHHHHHHHhccccCCceEEEEecc--
Confidence 4666666655432 15678999999999999999999999999999999999999999999997532 34577777
Q ss_pred ccHHHHHHHHHhcCCcEEEeeCCCChHHHHHHHHH
Q psy437 95 KECDSVAAALAQERINAISYHAGLADKLRNEVQMK 129 (184)
Q Consensus 95 ~~~e~~a~gL~~~gi~~~vih~~~p~~~r~~~~~~ 129 (184)
..+.||+-...+ .||++|+|=++....|+.
T Consensus 549 ----AGGlGINLt~Ad-~VIiyD~dWNP~~d~QAi 578 (1033)
T PLN03142 549 ----AGGLGINLATAD-IVILYDSDWNPQVDLQAQ 578 (1033)
T ss_pred ----ccccCCchhhCC-EEEEeCCCCChHHHHHHH
Confidence 335577888888 999999988877777765
No 187
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=98.06 E-value=6.1e-05 Score=61.79 Aligned_cols=131 Identities=13% Similarity=0.089 Sum_probs=92.5
Q ss_pred HHHHHHHhhc-CCCcEEEEeccHHHHHHHHHHHHhC--CCeeEEecCCCCHHHHHHHHHHHhccCceEEEEEeecccHHH
Q psy437 23 EVISLIKAKY-SGQSGIVYCLTRKECDSVAAALAQE--RINAISYHAGLADKLRNEVQMKWISNKVHVGHWTVVSKECDS 99 (184)
Q Consensus 23 ~L~~~l~~~~-~~~~~IIf~~tr~~~e~la~~L~~~--gi~~~~~hg~l~~~~R~~~~~~f~~g~~~vlVaT~tr~~~e~ 99 (184)
.|..+|.++. .+.|.+||+++.+..++++..|++. ....++.|+. .+.|.+-.++|++|+..+||.|. .
T Consensus 293 kl~~~lekq~~~~~P~liF~p~I~~~eq~a~~lk~~~~~~~i~~Vhs~--d~~R~EkV~~fR~G~~~lLiTTT------I 364 (441)
T COG4098 293 KLKRWLEKQRKTGRPVLIFFPEIETMEQVAAALKKKLPKETIASVHSE--DQHRKEKVEAFRDGKITLLITTT------I 364 (441)
T ss_pred HHHHHHHHHHhcCCcEEEEecchHHHHHHHHHHHhhCCccceeeeecc--CccHHHHHHHHHcCceEEEEEee------h
Confidence 5667776542 4578999999999999999999653 3345677764 56799999999999999999999 8
Q ss_pred HHHHHHhcCCcEEEeeCCCCh-HHHHHHHHHhhCCCceEEEEEecCCcc-EEEecCCCCCccccccccc
Q psy437 100 VAAALAQERINAISYHAGLAD-KLRNEVQMKWISNKVHLYNVWKIQWKR-IIWIHSLVLIKPDYLPPIL 166 (184)
Q Consensus 100 ~a~gL~~~gi~~~vih~~~p~-~~r~~~~~~f~~~~~~v~va~D~~~vr-~v~~~~~p~~~e~y~~~i~ 166 (184)
+-||...+++++.|+.+.-+- +...-+|=+.+-|.- .|.|+=. .-+|+...+++..-.++|.
T Consensus 365 LERGVTfp~vdV~Vlgaeh~vfTesaLVQIaGRvGRs-----~~~PtGdv~FFH~G~skaM~~A~keIk 428 (441)
T COG4098 365 LERGVTFPNVDVFVLGAEHRVFTESALVQIAGRVGRS-----LERPTGDVLFFHYGKSKAMKQARKEIK 428 (441)
T ss_pred hhcccccccceEEEecCCcccccHHHHHHHhhhccCC-----CcCCCCcEEEEeccchHHHHHHHHHHH
Confidence 999999999998888777543 334445545554431 1333222 1246666666655555553
No 188
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=98.06 E-value=1.8e-05 Score=72.41 Aligned_cols=92 Identities=21% Similarity=0.263 Sum_probs=77.7
Q ss_pred ChHHHHHHHHHhhcCCCcEEEEecc---HHHHHHHHHHHHhCCCeeEEecCCCCHHHHHHHHHHHhccCceEEEEEeecc
Q psy437 19 NVLKEVISLIKAKYSGQSGIVYCLT---RKECDSVAAALAQERINAISYHAGLADKLRNEVQMKWISNKVHVGHWTVVSK 95 (184)
Q Consensus 19 ~k~~~L~~~l~~~~~~~~~IIf~~t---r~~~e~la~~L~~~gi~~~~~hg~l~~~~R~~~~~~f~~g~~~vlVaT~tr~ 95 (184)
...+.+.+++++ -+.-+|||+++ ++.++.+++.|+.+|+++..+|++ +.+.++.|..|++++||.+.+.-
T Consensus 322 ~~~e~~~elvk~--lG~GgLIfV~~d~G~e~aeel~e~Lr~~Gi~a~~~~a~-----~~~~le~F~~GeidvLVGvAsyY 394 (1187)
T COG1110 322 ESLEKVVELVKK--LGDGGLIFVPIDYGREKAEELAEYLRSHGINAELIHAE-----KEEALEDFEEGEVDVLVGVASYY 394 (1187)
T ss_pred ccHHHHHHHHHH--hCCCeEEEEEcHHhHHHHHHHHHHHHhcCceEEEeecc-----chhhhhhhccCceeEEEEecccc
Confidence 445666777766 34579999999 999999999999999999999985 47889999999999999998775
Q ss_pred cHHHHHHHHHhcCCcEEEeeCCCC
Q psy437 96 ECDSVAAALAQERINAISYHAGLA 119 (184)
Q Consensus 96 ~~e~~a~gL~~~gi~~~vih~~~p 119 (184)
. .+.||||-|..--.++-+|.|
T Consensus 395 G--~lVRGlDLP~rirYaIF~GvP 416 (1187)
T COG1110 395 G--VLVRGLDLPHRIRYAVFYGVP 416 (1187)
T ss_pred c--ceeecCCchhheeEEEEecCC
Confidence 5 778999988644488999999
No 189
>KOG0347|consensus
Probab=98.06 E-value=2.5e-05 Score=67.40 Aligned_cols=136 Identities=16% Similarity=0.107 Sum_probs=121.8
Q ss_pred EEEEeccHHHHHHHHHHHHh----CCCeeEEecCCCCHHHHHHHHHHHhccCceEEEEEeec------------------
Q psy437 37 GIVYCLTRKECDSVAAALAQ----ERINAISYHAGLADKLRNEVQMKWISNKVHVGHWTVVS------------------ 94 (184)
Q Consensus 37 ~IIf~~tr~~~e~la~~L~~----~gi~~~~~hg~l~~~~R~~~~~~f~~g~~~vlVaT~tr------------------ 94 (184)
++|+++||+.|.++.+.|.. .++.++.+.|||+.+...+++.+ .-.|+|||++|
T Consensus 266 ~LV~tPTRELa~QV~~Hl~ai~~~t~i~v~si~GGLavqKQqRlL~~----~p~IVVATPGRlweli~e~n~~l~~~k~v 341 (731)
T KOG0347|consen 266 ALVVTPTRELAHQVKQHLKAIAEKTQIRVASITGGLAVQKQQRLLNQ----RPDIVVATPGRLWELIEEDNTHLGNFKKV 341 (731)
T ss_pred eEEecChHHHHHHHHHHHHHhccccCeEEEEeechhHHHHHHHHHhc----CCCEEEecchHHHHHHHhhhhhhhhhhhc
Confidence 99999999999999999975 48999999999998877777766 56799999999
Q ss_pred --------------------------------------------------------------------------------
Q psy437 95 -------------------------------------------------------------------------------- 94 (184)
Q Consensus 95 -------------------------------------------------------------------------------- 94 (184)
T Consensus 342 kcLVlDEaDRmvekghF~Els~lL~~L~e~~~~~qrQTlVFSATlt~~~~~~~~~~~k~~~k~~~~~~kiq~Lmk~ig~~ 421 (731)
T KOG0347|consen 342 KCLVLDEADRMVEKGHFEELSKLLKHLNEEQKNRQRQTLVFSATLTLVLQQPLSSSRKKKDKEDELNAKIQHLMKKIGFR 421 (731)
T ss_pred eEEEEccHHHHhhhccHHHHHHHHHHhhhhhcccccceEEEEEEeehhhcChhHHhhhccchhhhhhHHHHHHHHHhCcc
Confidence
Q ss_pred ----------------------------------------------------ccHHHHHHHHHhcCCcEEEeeCCCChHH
Q psy437 95 ----------------------------------------------------KECDSVAAALAQERINAISYHAGLADKL 122 (184)
Q Consensus 95 ----------------------------------------------------~~~e~~a~gL~~~gi~~~vih~~~p~~~ 122 (184)
..+.+++..|..-+|+.+.+|+.|-|..
T Consensus 422 ~kpkiiD~t~q~~ta~~l~Es~I~C~~~eKD~ylyYfl~ryPGrTlVF~NsId~vKRLt~~L~~L~i~p~~LHA~M~QKq 501 (731)
T KOG0347|consen 422 GKPKIIDLTPQSATASTLTESLIECPPLEKDLYLYYFLTRYPGRTLVFCNSIDCVKRLTVLLNNLDIPPLPLHASMIQKQ 501 (731)
T ss_pred CCCeeEecCcchhHHHHHHHHhhcCCccccceeEEEEEeecCCceEEEechHHHHHHHHHHHhhcCCCCchhhHHHHHHH
Confidence 3578888899999999999999999999
Q ss_pred HHHHHHHhhCCCceEEEE-------EecCCccEEEecCCCCCccccccccccc-cCCccccc
Q psy437 123 RNEVQMKWISNKVHLYNV-------WKIQWKRIIWIHSLVLIKPDYLPPILDL-RLGREDIR 176 (184)
Q Consensus 123 r~~~~~~f~~~~~~v~va-------~D~~~vr~v~~~~~p~~~e~y~~~i~~~-~~~r~~~~ 176 (184)
|-.-++.|+...-.|++| +|||+|.|||||.+|.+.|-|+||-+++ |++-++++
T Consensus 502 RLknLEkF~~~~~~VLiaTDVAARGLDIp~V~HVIHYqVPrtseiYVHRSGRTARA~~~Gvs 563 (731)
T KOG0347|consen 502 RLKNLEKFKQSPSGVLIATDVAARGLDIPGVQHVIHYQVPRTSEIYVHRSGRTARANSEGVS 563 (731)
T ss_pred HHHhHHHHhcCCCeEEEeehhhhccCCCCCcceEEEeecCCccceeEecccccccccCCCeE
Confidence 999999999998899998 6999999999999999999999999775 77766553
No 190
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
Probab=98.05 E-value=3e-05 Score=66.49 Aligned_cols=85 Identities=7% Similarity=0.004 Sum_probs=79.9
Q ss_pred CceEEEEEeecccHHHHHHHHHhcCCcEEEeeCCCChHHHHHHHHHhhCCCceEEEE-------EecCCccEEEecCCCC
Q psy437 84 KVHVGHWTVVSKECDSVAAALAQERINAISYHAGLADKLRNEVQMKWISNKVHLYNV-------WKIQWKRIIWIHSLVL 156 (184)
Q Consensus 84 ~~~vlVaT~tr~~~e~~a~gL~~~gi~~~vih~~~p~~~r~~~~~~f~~~~~~v~va-------~D~~~vr~v~~~~~p~ 156 (184)
..+++|+|.....++.++..|..+|+ +.++.++.|+..|..+.+.|+.|...++|. +|+|++..+|......
T Consensus 283 ~~~~lif~~~~~~a~~i~~~~~~~~~-~~~it~~t~~~eR~~il~~fr~g~~~~lv~~~vl~EGvDiP~~~~~i~~~~t~ 361 (442)
T COG1061 283 GDKTLIFASDVEHAYEIAKLFLAPGI-VEAITGETPKEEREAILERFRTGGIKVLVTVKVLDEGVDIPDADVLIILRPTG 361 (442)
T ss_pred CCcEEEEeccHHHHHHHHHHhcCCCc-eEEEECCCCHHHHHHHHHHHHcCCCCEEEEeeeccceecCCCCcEEEEeCCCC
Confidence 56899999999999999999999999 799999999999999999999988999888 6999999999999999
Q ss_pred Cccccccccccc-c
Q psy437 157 IKPDYLPPILDL-R 169 (184)
Q Consensus 157 ~~e~y~~~i~~~-~ 169 (184)
|.-.|+|+++++ |
T Consensus 362 S~~~~~Q~lGR~LR 375 (442)
T COG1061 362 SRRLFIQRLGRGLR 375 (442)
T ss_pred cHHHHHHHhhhhcc
Confidence 999999999874 5
No 191
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=97.98 E-value=4e-05 Score=67.67 Aligned_cols=98 Identities=12% Similarity=0.182 Sum_probs=69.5
Q ss_pred CCCeEEEEEEccChHHHHHHHHHhh-cCCCcEEEEeccHH--------HHHHHHHHHHhC--CCeeEEecCCCCHHHHHH
Q psy437 7 RANLKYEILPKKNVLKEVISLIKAK-YSGQSGIVYCLTRK--------ECDSVAAALAQE--RINAISYHAGLADKLRNE 75 (184)
Q Consensus 7 R~Nl~y~v~~~~~k~~~L~~~l~~~-~~~~~~IIf~~tr~--------~~e~la~~L~~~--gi~~~~~hg~l~~~~R~~ 75 (184)
|.-|.=.+.+. ++...+.+.+++. .++.++.+.|+-.+ .++.+++.|... ++++..+||.|+..++++
T Consensus 446 RkpI~T~~i~~-~~~~~v~e~i~~ei~~GrQaY~VcPLIeESE~l~l~~a~~~~~~L~~~~~~~~vgL~HGrm~~~eKd~ 524 (677)
T COG1200 446 RKPITTVVIPH-ERRPEVYERIREEIAKGRQAYVVCPLIEESEKLELQAAEELYEELKSFLPELKVGLVHGRMKPAEKDA 524 (677)
T ss_pred CCceEEEEecc-ccHHHHHHHHHHHHHcCCEEEEEeccccccccchhhhHHHHHHHHHHHcccceeEEEecCCChHHHHH
Confidence 44444333333 2445555555432 35678888887544 456667777642 677999999999999999
Q ss_pred HHHHHhccCceEEEEEeecccHHHHHHHHHhcCCcE
Q psy437 76 VQMKWISNKVHVGHWTVVSKECDSVAAALAQERINA 111 (184)
Q Consensus 76 ~~~~f~~g~~~vlVaT~tr~~~e~~a~gL~~~gi~~ 111 (184)
++++|++|+++|||||. ++--|.|.|+-.+
T Consensus 525 vM~~Fk~~e~~ILVaTT------VIEVGVdVPnATv 554 (677)
T COG1200 525 VMEAFKEGEIDILVATT------VIEVGVDVPNATV 554 (677)
T ss_pred HHHHHHcCCCcEEEEee------EEEecccCCCCeE
Confidence 99999999999999999 5555677776654
No 192
>PRK09694 helicase Cas3; Provisional
Probab=97.96 E-value=7.9e-05 Score=68.65 Aligned_cols=86 Identities=12% Similarity=0.049 Sum_probs=68.0
Q ss_pred cCceEEEEEeecccHHHHHHHHHhcC---CcEEEeeCCCChHHH----HHHHHHh-hCCC---ceEEEE-------EecC
Q psy437 83 NKVHVGHWTVVSKECDSVAAALAQER---INAISYHAGLADKLR----NEVQMKW-ISNK---VHLYNV-------WKIQ 144 (184)
Q Consensus 83 g~~~vlVaT~tr~~~e~~a~gL~~~g---i~~~vih~~~p~~~r----~~~~~~f-~~~~---~~v~va-------~D~~ 144 (184)
...+++|.++|.+.+..+++.|...+ .++..+|+.+++..| ..+.+.| ++|+ ..|+|+ +|+
T Consensus 559 ~g~~vLVf~NTV~~Aq~ly~~L~~~~~~~~~v~llHsrf~~~dR~~~E~~vl~~fgk~g~r~~~~ILVaTQViE~GLDI- 637 (878)
T PRK09694 559 AGAQVCLICNLVDDAQKLYQRLKELNNTQVDIDLFHARFTLNDRREKEQRVIENFGKNGKRNQGRILVATQVVEQSLDL- 637 (878)
T ss_pred cCCEEEEEECCHHHHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHHHHHHhcCCcCCCeEEEECcchhheeec-
Confidence 34579999999999999999997654 678999999999988 4566667 5555 468888 599
Q ss_pred CccEEEecCCCCCccccccccccccCCcc
Q psy437 145 WKRIIWIHSLVLIKPDYLPPILDLRLGRE 173 (184)
Q Consensus 145 ~vr~v~~~~~p~~~e~y~~~i~~~~~~r~ 173 (184)
++..+|....| .+.++|+++ |+||-
T Consensus 638 d~DvlItdlaP--idsLiQRaG--R~~R~ 662 (878)
T PRK09694 638 DFDWLITQLCP--VDLLFQRLG--RLHRH 662 (878)
T ss_pred CCCeEEECCCC--HHHHHHHHh--ccCCC
Confidence 47888887777 689999996 55553
No 193
>KOG0950|consensus
Probab=97.94 E-value=1.7e-05 Score=71.94 Aligned_cols=117 Identities=20% Similarity=0.218 Sum_probs=86.2
Q ss_pred CCcEEEEeccHHHHHHHHHHHHhC--------------------------------------CCeeEEecCCCCHHHHHH
Q psy437 34 GQSGIVYCLTRKECDSVAAALAQE--------------------------------------RINAISYHAGLADKLRNE 75 (184)
Q Consensus 34 ~~~~IIf~~tr~~~e~la~~L~~~--------------------------------------gi~~~~~hg~l~~~~R~~ 75 (184)
+.++||||++|+.|+.+|..+... -..+++.|+|++.++|+.
T Consensus 460 ~~~~lvfc~sk~~ce~~a~~~~~~vpk~~~~e~~~~~~~~~s~s~~lr~~~~~ld~Vl~~ti~~GvAyHhaGLT~eER~~ 539 (1008)
T KOG0950|consen 460 GSSVLVFCPSKKNCENVASLIAKKVPKHIKSEKRLGLWELLSISNLLRRIPGILDPVLAKTIPYGVAYHHAGLTSEEREI 539 (1008)
T ss_pred CCeEEEEcCcccchHHHHHHHHHHhhHhhhhhhhhhHHHHHHHHhHhhcCCcccchHHheeccccceecccccccchHHH
Confidence 345999999999999998665420 125788999999999999
Q ss_pred HHHHHhccCceEEEEEeecccHHHHHHHHHhcCCcE---EEeeCCCChHHHHHHHHHhhCCCc-------eEEEE--Eec
Q psy437 76 VQMKWISNKVHVGHWTVVSKECDSVAAALAQERINA---ISYHAGLADKLRNEVQMKWISNKV-------HLYNV--WKI 143 (184)
Q Consensus 76 ~~~~f~~g~~~vlVaT~tr~~~e~~a~gL~~~gi~~---~vih~~~p~~~r~~~~~~f~~~~~-------~v~va--~D~ 143 (184)
+...|++|-+.|++||+ .+|.|..-|--++ .-+-+.-..+.-+|-|...+.|.. .++++ +++
T Consensus 540 iE~afr~g~i~vl~aTS------TlaaGVNLPArRVIiraP~~g~~~l~~~~YkQM~GRAGR~gidT~GdsiLI~k~~e~ 613 (1008)
T KOG0950|consen 540 IEAAFREGNIFVLVATS------TLAAGVNLPARRVIIRAPYVGREFLTRLEYKQMVGRAGRTGIDTLGDSILIIKSSEK 613 (1008)
T ss_pred HHHHHHhcCeEEEEecc------hhhccCcCCcceeEEeCCccccchhhhhhHHhhhhhhhhcccccCcceEEEeeccch
Confidence 99999999999999999 7788888877662 224444455666788887666543 44444 677
Q ss_pred CCccEEEecCCCC
Q psy437 144 QWKRIIWIHSLVL 156 (184)
Q Consensus 144 ~~vr~v~~~~~p~ 156 (184)
..++-++...+|.
T Consensus 614 ~~~~~lv~~~~~~ 626 (1008)
T KOG0950|consen 614 KRVRELVNSPLKP 626 (1008)
T ss_pred hHHHHHHhccccc
Confidence 6666665555543
No 194
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=97.92 E-value=8.8e-05 Score=69.01 Aligned_cols=103 Identities=12% Similarity=0.110 Sum_probs=79.5
Q ss_pred CCCCCeEEEEEEccC--hHHHHHHHHHhhcCCCcEEEEeccHHHHHHHHHHHHhC--CCeeEEecCCCCHHHHHHHHHHH
Q psy437 5 FNRANLKYEILPKKN--VLKEVISLIKAKYSGQSGIVYCLTRKECDSVAAALAQE--RINAISYHAGLADKLRNEVQMKW 80 (184)
Q Consensus 5 ~~R~Nl~y~v~~~~~--k~~~L~~~l~~~~~~~~~IIf~~tr~~~e~la~~L~~~--gi~~~~~hg~l~~~~R~~~~~~f 80 (184)
.+|--+.=.|.+.+. ..+.|...| ..+++.--.+|..+..+.++..|++. ..++++.||.|+..+-+.++..|
T Consensus 775 ~~R~pV~T~V~~~d~~~ireAI~REl---~RgGQvfYv~NrV~~Ie~~~~~L~~LVPEarI~vaHGQM~e~eLE~vM~~F 851 (1139)
T COG1197 775 EDRLPVKTFVSEYDDLLIREAILREL---LRGGQVFYVHNRVESIEKKAERLRELVPEARIAVAHGQMRERELEEVMLDF 851 (1139)
T ss_pred CCCcceEEEEecCChHHHHHHHHHHH---hcCCEEEEEecchhhHHHHHHHHHHhCCceEEEEeecCCCHHHHHHHHHHH
Confidence 345445544444443 223333333 24566655678889999999999975 66789999999999999999999
Q ss_pred hccCceEEEEEeecccHHHHHHHHHhcCCcEEEeeC
Q psy437 81 ISNKVHVGHWTVVSKECDSVAAALAQERINAISYHA 116 (184)
Q Consensus 81 ~~g~~~vlVaT~tr~~~e~~a~gL~~~gi~~~vih~ 116 (184)
.+|+.+|||||. .+-.|+|+|+.++.+||-
T Consensus 852 ~~g~~dVLv~TT------IIEtGIDIPnANTiIIe~ 881 (1139)
T COG1197 852 YNGEYDVLVCTT------IIETGIDIPNANTIIIER 881 (1139)
T ss_pred HcCCCCEEEEee------eeecCcCCCCCceEEEec
Confidence 999999999999 889999999999877763
No 195
>KOG0948|consensus
Probab=97.80 E-value=6.6e-05 Score=66.93 Aligned_cols=115 Identities=19% Similarity=0.275 Sum_probs=85.5
Q ss_pred HHHHHHHhhcCCCcEEEEeccHHHHHHHHHHHHhCCC---------------------------------------eeEE
Q psy437 23 EVISLIKAKYSGQSGIVYCLTRKECDSVAAALAQERI---------------------------------------NAIS 63 (184)
Q Consensus 23 ~L~~~l~~~~~~~~~IIf~~tr~~~e~la~~L~~~gi---------------------------------------~~~~ 63 (184)
.++..+... ...|+|||+-++++||..|-.+.+..+ ....
T Consensus 373 kiVkmi~~~-~~~PVIvFSFSkkeCE~~Alqm~kldfN~deEk~~V~~iF~nAi~~LseeDr~LPqie~iLPLL~RGIGI 451 (1041)
T KOG0948|consen 373 KIVKMIMER-NYLPVIVFSFSKKECEAYALQMSKLDFNTDEEKELVETIFNNAIDQLSEEDRELPQIENILPLLRRGIGI 451 (1041)
T ss_pred HHHHHHHhh-cCCceEEEEecHhHHHHHHHhhccCcCCChhHHHHHHHHHHHHHHhcChhhccchHHHHHHHHHHhcccc
Confidence 444444443 667899999999999999977753211 3466
Q ss_pred ecCCCCHHHHHHHHHHHhccCceEEEEEeecccHHHHHHHHHhcCCcEEEeeCCCChHHHHHHHHHhhCCCceEEEE---
Q psy437 64 YHAGLADKLRNEVQMKWISNKVHVGHWTVVSKECDSVAAALAQERINAISYHAGLADKLRNEVQMKWISNKVHLYNV--- 140 (184)
Q Consensus 64 ~hg~l~~~~R~~~~~~f~~g~~~vlVaT~tr~~~e~~a~gL~~~gi~~~vih~~~p~~~r~~~~~~f~~~~~~v~va--- 140 (184)
.||||-+--++-+.--|..|-+++|.||.|+ +-||+-|.-. -|..+
T Consensus 452 HHsGLLPIlKE~IEILFqEGLvKvLFATETF------siGLNMPAkT-------------------------VvFT~~rK 500 (1041)
T KOG0948|consen 452 HHSGLLPILKEVIEILFQEGLVKVLFATETF------SIGLNMPAKT-------------------------VVFTAVRK 500 (1041)
T ss_pred ccccchHHHHHHHHHHHhccHHHHHHhhhhh------hhccCCccee-------------------------EEEeeccc
Confidence 8999999989889889999999999999966 4466554432 12222
Q ss_pred EecCCccEEEecCCCCCccccccccccccCCccccccc
Q psy437 141 WKIQWKRIIWIHSLVLIKPDYLPPILDLRLGREDIREG 178 (184)
Q Consensus 141 ~D~~~vr~v~~~~~p~~~e~y~~~i~~~~~~r~~~~~~ 178 (184)
||=.+.||| +.=+|+|=- +|+||+++-+-
T Consensus 501 fDG~~fRwi-------ssGEYIQMS--GRAGRRG~Ddr 529 (1041)
T KOG0948|consen 501 FDGKKFRWI-------SSGEYIQMS--GRAGRRGIDDR 529 (1041)
T ss_pred cCCcceeee-------cccceEEec--ccccccCCCCC
Confidence 788888888 677899976 79999977654
No 196
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=97.57 E-value=0.00025 Score=66.28 Aligned_cols=98 Identities=9% Similarity=-0.013 Sum_probs=80.9
Q ss_pred HHHHHhccCceEEEEEeecccHHHHHHHHHhcCCcEEEeeCCCChHHHHHHHHHhhCCC---ceEEEE-------EecCC
Q psy437 76 VQMKWISNKVHVGHWTVVSKECDSVAAALAQERINAISYHAGLADKLRNEVQMKWISNK---VHLYNV-------WKIQW 145 (184)
Q Consensus 76 ~~~~f~~g~~~vlVaT~tr~~~e~~a~gL~~~gi~~~vih~~~p~~~r~~~~~~f~~~~---~~v~va-------~D~~~ 145 (184)
++..+.....+|||+|.-....+.+...|...|+..+.|+|++|...|..+.+.|.... ..+++. ++...
T Consensus 479 LL~~Lk~~g~KVLIFSQft~~LdiLed~L~~~g~~y~rIdGsts~~eRq~~Id~Fn~~~s~~~VfLLSTrAGGlGINLt~ 558 (1033)
T PLN03142 479 LLPKLKERDSRVLIFSQMTRLLDILEDYLMYRGYQYCRIDGNTGGEDRDASIDAFNKPGSEKFVFLLSTRAGGLGINLAT 558 (1033)
T ss_pred HHHHHHhcCCeEEeehhHHHHHHHHHHHHHHcCCcEEEECCCCCHHHHHHHHHHhccccCCceEEEEeccccccCCchhh
Confidence 34445556678999999888999999999999999999999999999999999997532 223333 58899
Q ss_pred ccEEEecCCCCCccccccccccc-cCCcc
Q psy437 146 KRIIWIHSLVLIKPDYLPPILDL-RLGRE 173 (184)
Q Consensus 146 vr~v~~~~~p~~~e~y~~~i~~~-~~~r~ 173 (184)
...||+||+|.++..+.|.+.+. |.|-.
T Consensus 559 Ad~VIiyD~dWNP~~d~QAidRaHRIGQk 587 (1033)
T PLN03142 559 ADIVILYDSDWNPQVDLQAQDRAHRIGQK 587 (1033)
T ss_pred CCEEEEeCCCCChHHHHHHHHHhhhcCCC
Confidence 99999999999999999999775 66653
No 197
>KOG0329|consensus
Probab=97.57 E-value=1.5e-05 Score=62.98 Aligned_cols=40 Identities=13% Similarity=0.090 Sum_probs=35.5
Q ss_pred EEEEeecccHHHHHHHHHhcCCcEEEeeCCCChHHHHHHHHHhhCCC
Q psy437 88 GHWTVVSKECDSVAAALAQERINAISYHAGLADKLRNEVQMKWISNK 134 (184)
Q Consensus 88 lVaT~tr~~~e~~a~gL~~~gi~~~vih~~~p~~~r~~~~~~f~~~~ 134 (184)
+|||+ ...+|||+..++ .|+|||||.+..+|+|+..+.|.
T Consensus 302 ~vat~------lfgrgmdiervN-i~~NYdmp~~~DtYlHrv~rAgr 341 (387)
T KOG0329|consen 302 LVATD------LFGRGMDIERVN-IVFNYDMPEDSDTYLHRVARAGR 341 (387)
T ss_pred hHHhh------hhccccCcccce-eeeccCCCCCchHHHHHhhhhhc
Confidence 88999 557899999999 99999999999999999966553
No 198
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=97.53 E-value=0.00062 Score=58.92 Aligned_cols=86 Identities=14% Similarity=0.070 Sum_probs=76.6
Q ss_pred ceEEEEEeecccHHHHHHHHHhcCCcEEEeeCCCChHHHHHHHHHhhCCCceEEEE-------EecCCccEEEecCC---
Q psy437 85 VHVGHWTVVSKECDSVAAALAQERINAISYHAGLADKLRNEVQMKWISNKVHLYNV-------WKIQWKRIIWIHSL--- 154 (184)
Q Consensus 85 ~~vlVaT~tr~~~e~~a~gL~~~gi~~~vih~~~p~~~r~~~~~~f~~~~~~v~va-------~D~~~vr~v~~~~~--- 154 (184)
-++||.|-|++++|.+..+|...||++.-+|.++..-.|..+.++.+.|...|+|. +|+|.|++|...|-
T Consensus 447 eRvLVTtLTKkmAEdLT~Yl~e~gikv~YlHSdidTlER~eIirdLR~G~~DvLVGINLLREGLDiPEVsLVAIlDADKe 526 (663)
T COG0556 447 ERVLVTTLTKKMAEDLTEYLKELGIKVRYLHSDIDTLERVEIIRDLRLGEFDVLVGINLLREGLDLPEVSLVAILDADKE 526 (663)
T ss_pred CeEEEEeehHHHHHHHHHHHHhcCceEEeeeccchHHHHHHHHHHHhcCCccEEEeehhhhccCCCcceeEEEEeecCcc
Confidence 68999999999999999999999999999999999999999999999999999999 49999999998874
Q ss_pred --CCCccccccccccccCCc
Q psy437 155 --VLIKPDYLPPILDLRLGR 172 (184)
Q Consensus 155 --p~~~e~y~~~i~~~~~~r 172 (184)
..|.-+.+|-| +|++|
T Consensus 527 GFLRse~SLIQtI--GRAAR 544 (663)
T COG0556 527 GFLRSERSLIQTI--GRAAR 544 (663)
T ss_pred ccccccchHHHHH--HHHhh
Confidence 44555666777 46665
No 199
>KOG0947|consensus
Probab=97.52 E-value=0.00036 Score=63.82 Aligned_cols=81 Identities=20% Similarity=0.257 Sum_probs=62.6
Q ss_pred HHHHHHHHhhcCCCcEEEEeccHHHHHHHHHHHHhCCC---------------------------------------eeE
Q psy437 22 KEVISLIKAKYSGQSGIVYCLTRKECDSVAAALAQERI---------------------------------------NAI 62 (184)
Q Consensus 22 ~~L~~~l~~~~~~~~~IIf~~tr~~~e~la~~L~~~gi---------------------------------------~~~ 62 (184)
-.|+..|.+. .--|+||||-+++.|+..|++|...++ ..+
T Consensus 556 l~lin~L~k~-~lLP~VvFvFSkkrCde~a~~L~~~nL~~~~EKseV~lfl~k~~~rLk~~DR~LPQvl~m~~ll~RGia 634 (1248)
T KOG0947|consen 556 LDLINHLRKK-NLLPVVVFVFSKKRCDEYADYLTNLNLTDSKEKSEVHLFLSKAVARLKGEDRNLPQVLSMRSLLLRGIA 634 (1248)
T ss_pred HHHHHHHhhc-ccCceEEEEEccccHHHHHHHHhccCcccchhHHHHHHHHHHHHHhcChhhccchHHHHHHHHHhhcch
Confidence 3445555443 556899999999999999999863211 367
Q ss_pred EecCCCCHHHHHHHHHHHhccCceEEEEEeecccHHHHHHHHHhcCC
Q psy437 63 SYHAGLADKLRNEVQMKWISNKVHVGHWTVVSKECDSVAAALAQERI 109 (184)
Q Consensus 63 ~~hg~l~~~~R~~~~~~f~~g~~~vlVaT~tr~~~e~~a~gL~~~gi 109 (184)
+.|||+=+--++-+..-|..|-++||.||.|+ |-|++-|.-
T Consensus 635 VHH~GlLPivKE~VE~LFqrGlVKVLFATETF------AMGVNMPAR 675 (1248)
T KOG0947|consen 635 VHHGGLLPIVKEVVELLFQRGLVKVLFATETF------AMGVNMPAR 675 (1248)
T ss_pred hhcccchHHHHHHHHHHHhcCceEEEeehhhh------hhhcCCCce
Confidence 79999999999999999999999999999966 556665543
No 200
>KOG0951|consensus
Probab=97.52 E-value=0.00087 Score=62.97 Aligned_cols=99 Identities=18% Similarity=0.124 Sum_probs=75.1
Q ss_pred HHhhcCCCcEEEEeccHHHHHHHHHHHHhC-------------------------------------CCeeEEecCCCCH
Q psy437 28 IKAKYSGQSGIVYCLTRKECDSVAAALAQE-------------------------------------RINAISYHAGLAD 70 (184)
Q Consensus 28 l~~~~~~~~~IIf~~tr~~~e~la~~L~~~-------------------------------------gi~~~~~hg~l~~ 70 (184)
+.++....+.|||+.+|+.+...|.+++.. .+..+..|+||+.
T Consensus 540 Vm~~agk~qVLVFVHsRkET~ktA~aIRd~~le~dtls~fmre~s~s~eilrtea~~~kn~dLkdLLpygfaIHhAGl~R 619 (1674)
T KOG0951|consen 540 VLEHAGKNQVLVFVHSRKETAKTARAIRDKALEEDTLSRFMREDSASREILRTEAGQAKNPDLKDLLPYGFAIHHAGLNR 619 (1674)
T ss_pred HHHhCCCCcEEEEEEechHHHHHHHHHHHHHhhhhHHHHHHhcccchhhhhhhhhhcccChhHHHHhhccceeeccCCCc
Confidence 334456789999999999999998887610 1356789999999
Q ss_pred HHHHHHHHHHhccCceEEEEEeecccHHHHHHHHHhcCCcEEEeeC------C----CChHHHHHHHHHhhCC
Q psy437 71 KLRNEVQMKWISNKVHVGHWTVVSKECDSVAAALAQERINAISYHA------G----LADKLRNEVQMKWISN 133 (184)
Q Consensus 71 ~~R~~~~~~f~~g~~~vlVaT~tr~~~e~~a~gL~~~gi~~~vih~------~----~p~~~r~~~~~~f~~~ 133 (184)
.+|..+.+.|..|.++++|+|- .+|.|+.-++.. ++|-+ + .+-+..+-.|...+.|
T Consensus 620 ~dR~~~EdLf~~g~iqvlvsta------tlawgvnlpaht-Viikgtqvy~pekg~w~elsp~dv~qmlgrag 685 (1674)
T KOG0951|consen 620 KDRELVEDLFADGHIQVLVSTA------TLAWGVNLPAHT-VIIKGTQVYDPEKGRWTELSPLDVMQMLGRAG 685 (1674)
T ss_pred chHHHHHHHHhcCceeEEEeeh------hhhhhcCCCcce-EEecCccccCcccCccccCCHHHHHHHHhhcC
Confidence 9999999999999999999999 779999988875 44433 2 2334555555555444
No 201
>PRK14701 reverse gyrase; Provisional
Probab=97.41 E-value=0.0029 Score=61.99 Aligned_cols=101 Identities=8% Similarity=-0.094 Sum_probs=82.7
Q ss_pred HHHHHHHHhccCceEEEEEeecccH---HHHHHHHHhcCCcEEEeeCCCChHHHHHHHHHhhCCCceEEEE---------
Q psy437 73 RNEVQMKWISNKVHVGHWTVVSKEC---DSVAAALAQERINAISYHAGLADKLRNEVQMKWISNKVHLYNV--------- 140 (184)
Q Consensus 73 R~~~~~~f~~g~~~vlVaT~tr~~~---e~~a~gL~~~gi~~~vih~~~p~~~r~~~~~~f~~~~~~v~va--------- 140 (184)
+..+++-.......+||+|++++.+ +.+|..|...|+++.++|++ |...++.|++|++.|+||
T Consensus 319 k~~L~~ll~~~g~~gIVF~~t~~~~e~ae~la~~L~~~Gi~a~~~h~~-----R~~~l~~F~~G~~~VLVaT~s~~gvaa 393 (1638)
T PRK14701 319 KEHVRELLKKLGKGGLIFVPIDEGAEKAEEIEKYLLEDGFKIELVSAK-----NKKGFDLFEEGEIDYLIGVATYYGTLV 393 (1638)
T ss_pred HHHHHHHHHhCCCCeEEEEeccccchHHHHHHHHHHHCCCeEEEecch-----HHHHHHHHHcCCCCEEEEecCCCCeeE
Confidence 3344333333335789999999865 89999999999999999996 889999999999999998
Q ss_pred --EecCC-ccEEEecCCCC---Ccccccccc-----------ccccCCccccccc
Q psy437 141 --WKIQW-KRIIWIHSLVL---IKPDYLPPI-----------LDLRLGREDIREG 178 (184)
Q Consensus 141 --~D~~~-vr~v~~~~~p~---~~e~y~~~i-----------~~~~~~r~~~~~~ 178 (184)
+|+|+ ||+|+|+++|+ +.+.|+|++ +..++||++++..
T Consensus 394 RGIDiP~~Vryvi~~~~Pk~~~~~e~~~~~~~~~~~~~~~~~~~~~a~~~g~~~~ 448 (1638)
T PRK14701 394 RGLDLPERIRFAVFYGVPKFRFRVDLEDPTIYRILGLLSEILKIEEELKEGIPIE 448 (1638)
T ss_pred ecCccCCccCEEEEeCCCCCCcchhhcccchhhhhcchHHHHHhhhhcccCCcch
Confidence 39999 99999999999 999999997 2247788776543
No 202
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative. This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli.
Probab=97.25 E-value=0.0015 Score=60.55 Aligned_cols=79 Identities=11% Similarity=0.017 Sum_probs=61.5
Q ss_pred CCCcEEEEeccHHHHHHHHHHHHh----CCCeeEEecCCCCHHHHHHHHHHHhccCceEEEEEeecccHHHHHHHHHhcC
Q psy437 33 SGQSGIVYCLTRKECDSVAAALAQ----ERINAISYHAGLADKLRNEVQMKWISNKVHVGHWTVVSKECDSVAAALAQER 108 (184)
Q Consensus 33 ~~~~~IIf~~tr~~~e~la~~L~~----~gi~~~~~hg~l~~~~R~~~~~~f~~g~~~vlVaT~tr~~~e~~a~gL~~~g 108 (184)
.+++++||++|.+..+.++..|.. .++++ +..+.+ ..|.+++++|++++..||++|+ ..++|+|.+|
T Consensus 673 ~~g~~LVlftS~~~l~~v~~~L~~~~~~~~~~~--l~q~~~-~~r~~ll~~F~~~~~~iLlgt~------sf~EGVD~~g 743 (850)
T TIGR01407 673 TSPKILVLFTSYEMLHMVYDMLNELPEFEGYEV--LAQGIN-GSRAKIKKRFNNGEKAILLGTS------SFWEGVDFPG 743 (850)
T ss_pred cCCCEEEEeCCHHHHHHHHHHHhhhccccCceE--EecCCC-ccHHHHHHHHHhCCCeEEEEcc------eeecccccCC
Confidence 567899999999999999999975 24443 333433 5789999999999999999998 5589999998
Q ss_pred CcE-EEeeCCCCh
Q psy437 109 INA-ISYHAGLAD 120 (184)
Q Consensus 109 i~~-~vih~~~p~ 120 (184)
... .|+=.++|-
T Consensus 744 ~~l~~viI~~LPf 756 (850)
T TIGR01407 744 NGLVCLVIPRLPF 756 (850)
T ss_pred CceEEEEEeCCCC
Confidence 662 444477773
No 203
>KOG0952|consensus
Probab=97.17 E-value=0.00088 Score=61.85 Aligned_cols=80 Identities=19% Similarity=0.238 Sum_probs=63.9
Q ss_pred HHHHHHHHHhhcCCCcEEEEeccHHHHHHHHHHHHhC----C-------------------CeeEEecCCCCHHHHHHHH
Q psy437 21 LKEVISLIKAKYSGQSGIVYCLTRKECDSVAAALAQE----R-------------------INAISYHAGLADKLRNEVQ 77 (184)
Q Consensus 21 ~~~L~~~l~~~~~~~~~IIf~~tr~~~e~la~~L~~~----g-------------------i~~~~~hg~l~~~~R~~~~ 77 (184)
.+.+.+++. .+.+.+|||.||..+-..|+.|.+. | ......|+||..++|..+.
T Consensus 339 ~~kv~e~~~---~g~qVlvFvhsR~~Ti~tA~~l~~~a~~~g~~~~f~~~~~~k~l~elf~~g~~iHhAGm~r~DR~l~E 415 (1230)
T KOG0952|consen 339 YDKVVEFLQ---EGHQVLVFVHSRNETIRTAKKLRERAETNGEKDLFLPSPRNKQLKELFQQGMGIHHAGMLRSDRQLVE 415 (1230)
T ss_pred HHHHHHHHH---cCCeEEEEEecChHHHHHHHHHHHHHHhcCcccccCCChhhHHHHHHHHhhhhhcccccchhhHHHHH
Confidence 444555553 5789999999999999999988742 1 1346689999999999999
Q ss_pred HHHhccCceEEEEEeecccHHHHHHHHHhcCC
Q psy437 78 MKWISNKVHVGHWTVVSKECDSVAAALAQERI 109 (184)
Q Consensus 78 ~~f~~g~~~vlVaT~tr~~~e~~a~gL~~~gi 109 (184)
..|..|.++|+|||+ .+|=|..-|..
T Consensus 416 ~~F~~G~i~vL~cTa------TLAwGVNLPA~ 441 (1230)
T KOG0952|consen 416 KEFKEGHIKVLCCTA------TLAWGVNLPAY 441 (1230)
T ss_pred HHHhcCCceEEEecc------eeeeccCCcce
Confidence 999999999999999 55667666654
No 204
>PRK12903 secA preprotein translocase subunit SecA; Reviewed
Probab=97.15 E-value=0.0059 Score=56.01 Aligned_cols=129 Identities=12% Similarity=0.079 Sum_probs=87.0
Q ss_pred CCCCCCeEEEE-----EEccChHHHHHHHHHhh-cCCCcEEEEeccHHHHHHHHHHHHhCCCeeEEecCCCCHHHHHHHH
Q psy437 4 SFNRANLKYEI-----LPKKNVLKEVISLIKAK-YSGQSGIVYCLTRKECDSVAAALAQERINAISYHAGLADKLRNEVQ 77 (184)
Q Consensus 4 s~~R~Nl~y~v-----~~~~~k~~~L~~~l~~~-~~~~~~IIf~~tr~~~e~la~~L~~~gi~~~~~hg~l~~~~R~~~~ 77 (184)
|.+||.+.-.. .....|...+++.+.+. ..+.|+||.|.|.+..+.++..|.+.|++..++++.-. +++..+
T Consensus 390 PTnkP~~R~D~~d~iy~t~~~K~~Aii~ei~~~~~~gqPVLVgT~SIe~SE~ls~~L~~~gi~h~vLNAk~~--e~EA~I 467 (925)
T PRK12903 390 PTNKPVIRKDEPDSIFGTKHAKWKAVVKEVKRVHKKGQPILIGTAQVEDSETLHELLLEANIPHTVLNAKQN--AREAEI 467 (925)
T ss_pred CCCCCeeeeeCCCcEEEcHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCCceeecccch--hhHHHH
Confidence 56777765332 12235788888777643 36789999999999999999999999999999988633 333332
Q ss_pred HHHhccC-ceEEEEEeecccHHHHHHHHHhc-C--Cc----EEEeeCCCChHHHHHHHHHhhCC------CceEEEEE
Q psy437 78 MKWISNK-VHVGHWTVVSKECDSVAAALAQE-R--IN----AISYHAGLADKLRNEVQMKWISN------KVHLYNVW 141 (184)
Q Consensus 78 ~~f~~g~-~~vlVaT~tr~~~e~~a~gL~~~-g--i~----~~vih~~~p~~~r~~~~~~f~~~------~~~v~va~ 141 (184)
-. ..|+ ..|.|||+ .+.||=|+. | +. -+||....|.+.|---|-.+++| ..+.++.+
T Consensus 468 Ia-~AG~~GaVTIATN------MAGRGTDI~Lg~~V~~~GGLhVIgTerheSrRIDnQLrGRaGRQGDpGss~f~lSL 538 (925)
T PRK12903 468 IA-KAGQKGAITIATN------MAGRGTDIKLSKEVLELGGLYVLGTDKAESRRIDNQLRGRSGRQGDVGESRFFISL 538 (925)
T ss_pred HH-hCCCCCeEEEecc------cccCCcCccCchhHHHcCCcEEEecccCchHHHHHHHhcccccCCCCCcceEEEec
Confidence 22 3453 46889999 444554332 1 00 17888889988887777665543 34555554
No 205
>PRK12904 preprotein translocase subunit SecA; Reviewed
Probab=97.04 E-value=0.0054 Score=56.22 Aligned_cols=87 Identities=14% Similarity=-0.026 Sum_probs=71.9
Q ss_pred cCceEEEEEeecccHHHHHHHHHhcCCcEEEeeCCCChHHHHHHHHHhhCCCceEEEE-------EecCCc---------
Q psy437 83 NKVHVGHWTVVSKECDSVAAALAQERINAISYHAGLADKLRNEVQMKWISNKVHLYNV-------WKIQWK--------- 146 (184)
Q Consensus 83 g~~~vlVaT~tr~~~e~~a~gL~~~gi~~~vih~~~p~~~r~~~~~~f~~~~~~v~va-------~D~~~v--------- 146 (184)
..-+|||+|.+..++|.++..|...|+++.++|+. +..|+.....|.+++..|+|| .|++-=
T Consensus 429 ~grpVLIft~Si~~se~Ls~~L~~~gi~~~vLnak--q~eREa~Iia~Ag~~g~VtIATNmAGRGtDI~LgGn~~~~~~~ 506 (830)
T PRK12904 429 KGQPVLVGTVSIEKSELLSKLLKKAGIPHNVLNAK--NHEREAEIIAQAGRPGAVTIATNMAGRGTDIKLGGNPEMLAAA 506 (830)
T ss_pred cCCCEEEEeCcHHHHHHHHHHHHHCCCceEeccCc--hHHHHHHHHHhcCCCceEEEecccccCCcCccCCCchhhhhhh
Confidence 34589999999999999999999999999999995 888888899999999999999 366542
Q ss_pred -----------------------------cEEEecCCCCCccccccccccccCCcc
Q psy437 147 -----------------------------RIIWIHSLVLIKPDYLPPILDLRLGRE 173 (184)
Q Consensus 147 -----------------------------r~v~~~~~p~~~e~y~~~i~~~~~~r~ 173 (184)
=+||-...|.| .-+.+.|++|+||-
T Consensus 507 ~~~~~~~~~~~~~~~~~~~~~~~v~~~GGLhVigTerhes--rRid~QlrGRagRQ 560 (830)
T PRK12904 507 LLEEETEEQIAKIKAEWQEEHEEVLEAGGLHVIGTERHES--RRIDNQLRGRSGRQ 560 (830)
T ss_pred hhhhhhhHHHHHHHHHHhhhhhhHHHcCCCEEEecccCch--HHHHHHhhcccccC
Confidence 36676666665 34667778899995
No 206
>PRK12326 preprotein translocase subunit SecA; Reviewed
Probab=96.98 E-value=0.0094 Score=53.85 Aligned_cols=86 Identities=16% Similarity=0.110 Sum_probs=60.5
Q ss_pred CCCCCCeEEEE----E-EccChHHHHHHHHHhh-cCCCcEEEEeccHHHHHHHHHHHHhCCCeeEEecCCCCHHHHHHHH
Q psy437 4 SFNRANLKYEI----L-PKKNVLKEVISLIKAK-YSGQSGIVYCLTRKECDSVAAALAQERINAISYHAGLADKLRNEVQ 77 (184)
Q Consensus 4 s~~R~Nl~y~v----~-~~~~k~~~L~~~l~~~-~~~~~~IIf~~tr~~~e~la~~L~~~gi~~~~~hg~l~~~~R~~~~ 77 (184)
|.+||++.... . ....|...+++.+.+. ..+.|+||.|.|.+..|.++..|.+.|++..++.+.-..++-..+-
T Consensus 391 Ptnkp~~R~d~~d~iy~t~~~k~~Aii~ei~~~~~~GrPVLVgt~sI~~SE~ls~~L~~~gI~h~vLNAk~~~~EA~IIa 470 (764)
T PRK12326 391 PPNKPNIREDEADRVYATAAEKNDAIVEHIAEVHETGQPVLVGTHDVAESEELAERLRAAGVPAVVLNAKNDAEEARIIA 470 (764)
T ss_pred CCCCCceeecCCCceEeCHHHHHHHHHHHHHHHHHcCCCEEEEeCCHHHHHHHHHHHHhCCCcceeeccCchHhHHHHHH
Confidence 56677765431 1 2234788888777543 3678999999999999999999999999999999874433322222
Q ss_pred HHHhccC-ceEEEEEe
Q psy437 78 MKWISNK-VHVGHWTV 92 (184)
Q Consensus 78 ~~f~~g~-~~vlVaT~ 92 (184)
+ .|+ ..|.|||+
T Consensus 471 ~---AG~~gaVTIATN 483 (764)
T PRK12326 471 E---AGKYGAVTVSTQ 483 (764)
T ss_pred h---cCCCCcEEEEec
Confidence 2 233 36889999
No 207
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=96.97 E-value=0.0024 Score=60.59 Aligned_cols=83 Identities=7% Similarity=0.047 Sum_probs=67.7
Q ss_pred CceEEEEEeecccHHHHHHHHHh------cCC---cEEEeeCCCChHHHHHHHHHhhCCCce-EEEE-------EecCCc
Q psy437 84 KVHVGHWTVVSKECDSVAAALAQ------ERI---NAISYHAGLADKLRNEVQMKWISNKVH-LYNV-------WKIQWK 146 (184)
Q Consensus 84 ~~~vlVaT~tr~~~e~~a~gL~~------~gi---~~~vih~~~p~~~r~~~~~~f~~~~~~-v~va-------~D~~~v 146 (184)
..+.||+|.+...|+.++..|.. +++ .+.+++++.+. +..+.+.|++++.+ |+|+ +|+|.|
T Consensus 698 ~~KtiIF~~s~~HA~~i~~~L~~~f~~~~~~~~~~~v~~itg~~~~--~~~li~~Fk~~~~p~IlVsvdmL~TG~DvP~v 775 (1123)
T PRK11448 698 EGKTLIFAATDAHADMVVRLLKEAFKKKYGQVEDDAVIKITGSIDK--PDQLIRRFKNERLPNIVVTVDLLTTGIDVPSI 775 (1123)
T ss_pred CCcEEEEEcCHHHHHHHHHHHHHHHHhhcCCcCccceEEEeCCccc--hHHHHHHHhCCCCCeEEEEecccccCCCcccc
Confidence 35789999999999999888754 233 34679999875 56688999998764 5555 699999
Q ss_pred cEEEecCCCCCccccccccccc
Q psy437 147 RIIWIHSLVLIKPDYLPPILDL 168 (184)
Q Consensus 147 r~v~~~~~p~~~e~y~~~i~~~ 168 (184)
..|+.+..++|.-.|+|.|+|+
T Consensus 776 ~~vVf~rpvkS~~lf~QmIGRg 797 (1123)
T PRK11448 776 CNLVFLRRVRSRILYEQMLGRA 797 (1123)
T ss_pred cEEEEecCCCCHHHHHHHHhhh
Confidence 9999999999999999999763
No 208
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms]
Probab=96.87 E-value=0.0026 Score=58.00 Aligned_cols=87 Identities=14% Similarity=0.100 Sum_probs=64.5
Q ss_pred CCCcEEEEeccHHHHHHHHHHHHhCCCeeEEecCCCCHHHHHHHHHHHh----ccCceEEEEEeecccHHHHHHHHHhcC
Q psy437 33 SGQSGIVYCLTRKECDSVAAALAQERINAISYHAGLADKLRNEVQMKWI----SNKVHVGHWTVVSKECDSVAAALAQER 108 (184)
Q Consensus 33 ~~~~~IIf~~tr~~~e~la~~L~~~gi~~~~~hg~l~~~~R~~~~~~f~----~g~~~vlVaT~tr~~~e~~a~gL~~~g 108 (184)
.+.+++|-|||...|..+...|+..+.++..+||.+...+|.+.++.+. .+...|+|+|. ++-.|+|..
T Consensus 439 ~~~kvlvI~NTV~~Aie~Y~~Lk~~~~~v~LlHSRf~~~dR~~ke~~l~~~~~~~~~~IvVaTQ------VIEagvDid- 511 (733)
T COG1203 439 EGKKVLVIVNTVDRAIELYEKLKEKGPKVLLLHSRFTLKDREEKERELKKLFKQNEGFIVVATQ------VIEAGVDID- 511 (733)
T ss_pred cCCcEEEEEecHHHHHHHHHHHHhcCCCEEEEecccchhhHHHHHHHHHHHHhccCCeEEEEee------EEEEEeccc-
Confidence 5678999999999999999999998878999999999999988877655 46778999999 333344443
Q ss_pred CcEEEeeCCCChHHHHHHHHH
Q psy437 109 INAISYHAGLADKLRNEVQMK 129 (184)
Q Consensus 109 i~~~vih~~~p~~~r~~~~~~ 129 (184)
.+ .+| -=+....+-+||.
T Consensus 512 fd-~mI--Te~aPidSLIQR~ 529 (733)
T COG1203 512 FD-VLI--TELAPIDSLIQRA 529 (733)
T ss_pred cC-eee--ecCCCHHHHHHHH
Confidence 22 111 2244555666665
No 209
>PRK13107 preprotein translocase subunit SecA; Reviewed
Probab=96.80 E-value=0.0061 Score=56.13 Aligned_cols=56 Identities=14% Similarity=0.038 Sum_probs=51.9
Q ss_pred cCceEEEEEeecccHHHHHHHHHhcCCcEEEeeCCCChHHHHHHHHHhhCCCceEEEE
Q psy437 83 NKVHVGHWTVVSKECDSVAAALAQERINAISYHAGLADKLRNEVQMKWISNKVHLYNV 140 (184)
Q Consensus 83 g~~~vlVaT~tr~~~e~~a~gL~~~gi~~~vih~~~p~~~r~~~~~~f~~~~~~v~va 140 (184)
..-+|||.|.+...+|.++..|...|+++.++|++.+++.+.-+.+.|+.|. |+||
T Consensus 448 ~GrpVLV~t~sv~~se~ls~~L~~~gi~~~vLnak~~~~Ea~ii~~Ag~~G~--VtIA 503 (908)
T PRK13107 448 RGQPVLVGTVSIEQSELLARLMVKEKIPHEVLNAKFHEREAEIVAQAGRTGA--VTIA 503 (908)
T ss_pred cCCCEEEEeCcHHHHHHHHHHHHHCCCCeEeccCcccHHHHHHHHhCCCCCc--EEEe
Confidence 3457999999999999999999999999999999999999999999999998 6666
No 210
>PRK14873 primosome assembly protein PriA; Provisional
Probab=96.75 E-value=0.011 Score=53.32 Aligned_cols=77 Identities=17% Similarity=0.167 Sum_probs=63.8
Q ss_pred cChHHHHHHHHHhhc-CCCcEEEEeccHHHHHHHHHHHHhC-C-CeeEEecCCCCHHHHHHHHHHHhccCceEEEEEeec
Q psy437 18 KNVLKEVISLIKAKY-SGQSGIVYCLTRKECDSVAAALAQE-R-INAISYHAGLADKLRNEVQMKWISNKVHVGHWTVVS 94 (184)
Q Consensus 18 ~~k~~~L~~~l~~~~-~~~~~IIf~~tr~~~e~la~~L~~~-g-i~~~~~hg~l~~~~R~~~~~~f~~g~~~vlVaT~tr 94 (184)
..|.+..++++.+.. .+.++||.++....+.++.+.|++. | ..++.+|+++++.+|.+...+..+|+.+|+|.|.+-
T Consensus 171 SGKTevyl~~i~~~l~~Gk~vLvLvPEi~lt~q~~~rl~~~f~~~~v~~lhS~l~~~~R~~~w~~~~~G~~~IViGtRSA 250 (665)
T PRK14873 171 EDWARRLAAAAAATLRAGRGALVVVPDQRDVDRLEAALRALLGAGDVAVLSAGLGPADRYRRWLAVLRGQARVVVGTRSA 250 (665)
T ss_pred CcHHHHHHHHHHHHHHcCCeEEEEecchhhHHHHHHHHHHHcCCCcEEEECCCCCHHHHHHHHHHHhCCCCcEEEEccee
Confidence 346666666654332 4678999999999999999999864 4 678999999999999999999999999999999876
No 211
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=96.72 E-value=0.0066 Score=55.02 Aligned_cols=87 Identities=14% Similarity=0.025 Sum_probs=69.5
Q ss_pred CCCeEEEEEEccChHHHHHHHHHhh-cCCCcEEEEeccHHHHHHHHHHHHhC-CCeeEEecCCCCHHHHHHHHHHHhccC
Q psy437 7 RANLKYEILPKKNVLKEVISLIKAK-YSGQSGIVYCLTRKECDSVAAALAQE-RINAISYHAGLADKLRNEVQMKWISNK 84 (184)
Q Consensus 7 R~Nl~y~v~~~~~k~~~L~~~l~~~-~~~~~~IIf~~tr~~~e~la~~L~~~-gi~~~~~hg~l~~~~R~~~~~~f~~g~ 84 (184)
.+.|.+-|+-. .|.+..++.+.+. ..+.++||.+|....+.++.+.|+.. |.+++.+|+++++.+|...-.+.++|+
T Consensus 218 ~~~Ll~GvTGS-GKTEvYl~~i~~~L~~GkqvLvLVPEI~Ltpq~~~rf~~rFg~~v~vlHS~Ls~~er~~~W~~~~~G~ 296 (730)
T COG1198 218 APFLLDGVTGS-GKTEVYLEAIAKVLAQGKQVLVLVPEIALTPQLLARFKARFGAKVAVLHSGLSPGERYRVWRRARRGE 296 (730)
T ss_pred cceeEeCCCCC-cHHHHHHHHHHHHHHcCCEEEEEeccccchHHHHHHHHHHhCCChhhhcccCChHHHHHHHHHHhcCC
Confidence 44455555443 4666666666433 25678999999999999999999764 888999999999999999999999999
Q ss_pred ceEEEEEeec
Q psy437 85 VHVGHWTVVS 94 (184)
Q Consensus 85 ~~vlVaT~tr 94 (184)
.+|+|.|.+-
T Consensus 297 ~~vVIGtRSA 306 (730)
T COG1198 297 ARVVIGTRSA 306 (730)
T ss_pred ceEEEEechh
Confidence 9999998865
No 212
>PF06862 DUF1253: Protein of unknown function (DUF1253); InterPro: IPR010678 This family is defined by a C-terminal region of approximately 500 residues, Digestive organ expansion factor (DEF) is thought to Regulate the p53 pathway to control the expansion growth of digestive organs and is required for the expansion growth of intestine, liver and exocrine pancreas, but not endocrine pancreas [, ].; GO: 0005634 nucleus
Probab=96.66 E-value=0.033 Score=47.78 Aligned_cols=89 Identities=7% Similarity=0.041 Sum_probs=77.0
Q ss_pred CCCcEEEEeccHHHHHHHHHHHHhCCCeeEEecCCCCHHHHHHHHHHHhccCceEEEEEeecccHHHHH--HHHHhcCCc
Q psy437 33 SGQSGIVYCLTRKECDSVAAALAQERINAISYHAGLADKLRNEVQMKWISNKVHVGHWTVVSKECDSVA--AALAQERIN 110 (184)
Q Consensus 33 ~~~~~IIf~~tr~~~e~la~~L~~~gi~~~~~hg~l~~~~R~~~~~~f~~g~~~vlVaT~tr~~~e~~a--~gL~~~gi~ 110 (184)
..+.++||++|--+=-.+.+.|.+.++....+|--.++.+-.++-..|.+|+.++|++|. +.- +...+.|++
T Consensus 299 ~~~~~LIfIPSYfDfVRlRN~lk~~~~sF~~i~EYts~~~isRAR~~F~~G~~~iLL~TE------R~HFfrRy~irGi~ 372 (442)
T PF06862_consen 299 KMSGTLIFIPSYFDFVRLRNYLKKENISFVQISEYTSNSDISRARSQFFHGRKPILLYTE------RFHFFRRYRIRGIR 372 (442)
T ss_pred CCCcEEEEecchhhhHHHHHHHHhcCCeEEEecccCCHHHHHHHHHHHHcCCceEEEEEh------HHhhhhhceecCCc
Confidence 456799999999999999999999999999999999999999999999999999999999 433 344788999
Q ss_pred EEEeeCCCChHHHHHHHH
Q psy437 111 AISYHAGLADKLRNEVQM 128 (184)
Q Consensus 111 ~~vih~~~p~~~r~~~~~ 128 (184)
.++=|++|....-|..=
T Consensus 373 -~viFY~~P~~p~fY~El 389 (442)
T PF06862_consen 373 -HVIFYGPPENPQFYSEL 389 (442)
T ss_pred -EEEEECCCCChhHHHHH
Confidence 99999999988766543
No 213
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=96.62 E-value=0.0056 Score=56.30 Aligned_cols=83 Identities=18% Similarity=0.140 Sum_probs=70.5
Q ss_pred CCCcEEEEeccHHHHHHHHHHHHh----CCCeeEEecCCCCHHHHHHHHHHHhccCceEEEEEeecccHHHHHHHHHhcC
Q psy437 33 SGQSGIVYCLTRKECDSVAAALAQ----ERINAISYHAGLADKLRNEVQMKWISNKVHVGHWTVVSKECDSVAAALAQER 108 (184)
Q Consensus 33 ~~~~~IIf~~tr~~~e~la~~L~~----~gi~~~~~hg~l~~~~R~~~~~~f~~g~~~vlVaT~tr~~~e~~a~gL~~~g 108 (184)
..+..+||.+=..+.+.+++.|.+ ..+.+..+||.|+.++..++.+--..|.-+|++||+ .+-..|.++|
T Consensus 258 ~~GdILvFLpG~~EI~~~~~~L~~~~l~~~~~i~PLy~~L~~~eQ~rvF~p~~~~~RKVVlATN------IAETSLTI~g 331 (845)
T COG1643 258 GSGSILVFLPGQREIERTAEWLEKAELGDDLEILPLYGALSAEEQVRVFEPAPGGKRKVVLATN------IAETSLTIPG 331 (845)
T ss_pred CCCCEEEECCcHHHHHHHHHHHHhccccCCcEEeeccccCCHHHHHhhcCCCCCCcceEEEEcc------ccccceeeCC
Confidence 567889999999999999999997 357788899999999988887777777677999999 6678999999
Q ss_pred CcEEEeeCCCChHH
Q psy437 109 INAISYHAGLADKL 122 (184)
Q Consensus 109 i~~~vih~~~p~~~ 122 (184)
|+ .|+-.|+.+..
T Consensus 332 Ir-~VIDsG~ak~~ 344 (845)
T COG1643 332 IR-YVIDSGLAKEK 344 (845)
T ss_pred eE-EEecCCccccc
Confidence 99 88887766543
No 214
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=96.44 E-value=0.0093 Score=54.99 Aligned_cols=56 Identities=16% Similarity=0.036 Sum_probs=52.1
Q ss_pred cCceEEEEEeecccHHHHHHHHHhcCCcEEEeeCCCChHHHHHHHHHhhCCCceEEEE
Q psy437 83 NKVHVGHWTVVSKECDSVAAALAQERINAISYHAGLADKLRNEVQMKWISNKVHLYNV 140 (184)
Q Consensus 83 g~~~vlVaT~tr~~~e~~a~gL~~~gi~~~vih~~~p~~~r~~~~~~f~~~~~~v~va 140 (184)
..-+|||+|.+...+|.++..|...|+++.++|+..++..+.-+.+.|+.|. |+||
T Consensus 443 ~g~PVLVgt~Sie~sE~ls~~L~~~gi~h~vLnak~~q~Ea~iia~Ag~~G~--VtIA 498 (896)
T PRK13104 443 RKQPVLVGTVSIEASEFLSQLLKKENIKHQVLNAKFHEKEAQIIAEAGRPGA--VTIA 498 (896)
T ss_pred CCCCEEEEeCcHHHHHHHHHHHHHcCCCeEeecCCCChHHHHHHHhCCCCCc--EEEe
Confidence 4457999999999999999999999999999999999999999999999996 6666
No 215
>PRK13103 secA preprotein translocase subunit SecA; Reviewed
Probab=96.34 E-value=0.028 Score=51.96 Aligned_cols=93 Identities=16% Similarity=0.118 Sum_probs=64.2
Q ss_pred CCCCCCeEEE-----EEEccChHHHHHHHHHhhc-CCCcEEEEeccHHHHHHHHHHHHhCCCeeEEecCCCCHHHHHHHH
Q psy437 4 SFNRANLKYE-----ILPKKNVLKEVISLIKAKY-SGQSGIVYCLTRKECDSVAAALAQERINAISYHAGLADKLRNEVQ 77 (184)
Q Consensus 4 s~~R~Nl~y~-----v~~~~~k~~~L~~~l~~~~-~~~~~IIf~~tr~~~e~la~~L~~~gi~~~~~hg~l~~~~R~~~~ 77 (184)
|.+||.+.-. ......|...+++.+...+ .+.|++|-|.|.+..|.++..|.+.|++..++.+.-...+-.-+-
T Consensus 413 PTnkP~~R~D~~d~vy~t~~eK~~Ai~~ei~~~~~~GrPVLVGT~SVe~SE~ls~~L~~~gi~h~VLNAk~~~~EA~IIa 492 (913)
T PRK13103 413 PPNKPLARKDFNDLVYLTAEEKYAAIITDIKECMALGRPVLVGTATIETSEHMSNLLKKEGIEHKVLNAKYHEKEAEIIA 492 (913)
T ss_pred CCCCCcccccCCCeEEcCHHHHHHHHHHHHHHHHhCCCCEEEEeCCHHHHHHHHHHHHHcCCcHHHhccccchhHHHHHH
Confidence 5667765421 1223358888887776443 678999999999999999999999999988777764433222222
Q ss_pred HHHhcc-CceEEEEEeecccHHHHHHHHHhcCCc
Q psy437 78 MKWISN-KVHVGHWTVVSKECDSVAAALAQERIN 110 (184)
Q Consensus 78 ~~f~~g-~~~vlVaT~tr~~~e~~a~gL~~~gi~ 110 (184)
..| ...|.|||+ |..+|-+
T Consensus 493 ---~AG~~GaVTIATN-----------MAGRGTD 512 (913)
T PRK13103 493 ---QAGRPGALTIATN-----------MAGRGTD 512 (913)
T ss_pred ---cCCCCCcEEEecc-----------CCCCCCC
Confidence 234 346889999 7666665
No 216
>PF13307 Helicase_C_2: Helicase C-terminal domain; PDB: 4A15_A 2VSF_A 3CRV_A 3CRW_1 2VL7_A.
Probab=96.26 E-value=0.0053 Score=45.71 Aligned_cols=85 Identities=13% Similarity=0.074 Sum_probs=57.8
Q ss_pred HHHHHhhcCCCcEEEEeccHHHHHHHHHHHHhCCC--eeEEecCCCCHHHHHHHHHHHhccCceEEEEEe--ecccHHHH
Q psy437 25 ISLIKAKYSGQSGIVYCLTRKECDSVAAALAQERI--NAISYHAGLADKLRNEVQMKWISNKVHVGHWTV--VSKECDSV 100 (184)
Q Consensus 25 ~~~l~~~~~~~~~IIf~~tr~~~e~la~~L~~~gi--~~~~~hg~l~~~~R~~~~~~f~~g~~~vlVaT~--tr~~~e~~ 100 (184)
.++++. .++.++||++|.+..+.+.+.+...+. ....+.- +..++..+++.|+.++..||+++. ++
T Consensus 2 ~~l~~~--~~g~~lv~f~Sy~~l~~~~~~~~~~~~~~~~~v~~q--~~~~~~~~l~~~~~~~~~il~~v~~g~~------ 71 (167)
T PF13307_consen 2 LELISA--VPGGVLVFFPSYRRLEKVYERLKERLEEKGIPVFVQ--GSKSRDELLEEFKRGEGAILLAVAGGSF------ 71 (167)
T ss_dssp HHHHHC--CSSEEEEEESSHHHHHHHHTT-TSS-E-ETSCEEES--TCCHHHHHHHHHCCSSSEEEEEETTSCC------
T ss_pred hHHHhc--CCCCEEEEeCCHHHHHHHHHHHHhhcccccceeeec--CcchHHHHHHHHHhccCeEEEEEecccE------
Confidence 445544 568899999999999999999986532 1122222 356789999999999999999987 55
Q ss_pred HHHHHhcCCcE-EEeeCCCC
Q psy437 101 AAALAQERINA-ISYHAGLA 119 (184)
Q Consensus 101 a~gL~~~gi~~-~vih~~~p 119 (184)
+.|+|.+|-.+ .|+=.++|
T Consensus 72 ~EGiD~~~~~~r~vii~glP 91 (167)
T PF13307_consen 72 SEGIDFPGDLLRAVIIVGLP 91 (167)
T ss_dssp GSSS--ECESEEEEEEES--
T ss_pred EEeecCCCchhheeeecCCC
Confidence 56888886332 77777777
No 217
>KOG0922|consensus
Probab=96.23 E-value=0.017 Score=51.19 Aligned_cols=79 Identities=14% Similarity=0.093 Sum_probs=64.5
Q ss_pred CCCcEEEEeccHHHHHHHHHHHHhC------CC--eeEEecCCCCHHHHHHHHHHHhccCceEEEEEeecccHHHHHHHH
Q psy437 33 SGQSGIVYCLTRKECDSVAAALAQE------RI--NAISYHAGLADKLRNEVQMKWISNKVHVGHWTVVSKECDSVAAAL 104 (184)
Q Consensus 33 ~~~~~IIf~~tr~~~e~la~~L~~~------gi--~~~~~hg~l~~~~R~~~~~~f~~g~~~vlVaT~tr~~~e~~a~gL 104 (184)
+++-.+||-.-.++.+...+.|.+. +. -...+||.|+.++..++.+.--.|.-+||++|+ ....-+
T Consensus 257 ~~GDILvFLtGqeEIe~~~~~l~e~~~~~~~~~~~~~lply~aL~~e~Q~rvF~p~p~g~RKvIlsTN------IAETSl 330 (674)
T KOG0922|consen 257 PPGDILVFLTGQEEIEAACELLRERAKSLPEDCPELILPLYGALPSEEQSRVFDPAPPGKRKVILSTN------IAETSL 330 (674)
T ss_pred CCCCEEEEeCCHHHHHHHHHHHHHHhhhccccCcceeeeecccCCHHHhhccccCCCCCcceEEEEcc------eeeeeE
Confidence 5566799999999999999998864 11 135689999999999998888889999999999 555678
Q ss_pred HhcCCcEEEeeCCC
Q psy437 105 AQERINAISYHAGL 118 (184)
Q Consensus 105 ~~~gi~~~vih~~~ 118 (184)
.++||. .|+--|+
T Consensus 331 TI~GI~-YVVDsG~ 343 (674)
T KOG0922|consen 331 TIDGIR-YVVDSGF 343 (674)
T ss_pred EecceE-EEEcCCc
Confidence 999998 8875553
No 218
>KOG0953|consensus
Probab=95.97 E-value=0.017 Score=50.43 Aligned_cols=68 Identities=10% Similarity=0.064 Sum_probs=54.3
Q ss_pred HHHHHHHhhcCCCcEEEEeccHHHHHHHHHHHHhCCCe-eEEecCCCCHHHHHHHHHHHhc--cCceEEEEEe
Q psy437 23 EVISLIKAKYSGQSGIVYCLTRKECDSVAAALAQERIN-AISYHAGLADKLRNEVQMKWIS--NKVHVGHWTV 92 (184)
Q Consensus 23 ~L~~~l~~~~~~~~~IIf~~tr~~~e~la~~L~~~gi~-~~~~hg~l~~~~R~~~~~~f~~--g~~~vlVaT~ 92 (184)
.+..-+++. +++-+|| |-|+++.=.+...+.+.|.. +++++|+++++.|.+.-..|-+ ++.+|||||+
T Consensus 347 ~~~~sl~nl-k~GDCvV-~FSkk~I~~~k~kIE~~g~~k~aVIYGsLPPeTr~aQA~~FNd~~~e~dvlVAsD 417 (700)
T KOG0953|consen 347 TALGSLSNL-KPGDCVV-AFSKKDIFTVKKKIEKAGNHKCAVIYGSLPPETRLAQAALFNDPSNECDVLVASD 417 (700)
T ss_pred hhhhhhccC-CCCCeEE-EeehhhHHHHHHHHHHhcCcceEEEecCCCCchhHHHHHHhCCCCCccceEEeec
Confidence 444455443 4444444 66888888889999988877 9999999999999999999986 8999999999
No 219
>COG1204 Superfamily II helicase [General function prediction only]
Probab=95.86 E-value=0.2 Score=46.06 Aligned_cols=140 Identities=19% Similarity=0.133 Sum_probs=89.8
Q ss_pred cEEEEeccHHHHHHHHHHHHhCCC-----------------eeEEecCCCC------HHHHHHHHHHHhccCceEEEEEe
Q psy437 36 SGIVYCLTRKECDSVAAALAQERI-----------------NAISYHAGLA------DKLRNEVQMKWISNKVHVGHWTV 92 (184)
Q Consensus 36 ~~IIf~~tr~~~e~la~~L~~~gi-----------------~~~~~hg~l~------~~~R~~~~~~f~~g~~~vlVaT~ 92 (184)
+.+=...|-..++.+|.+|....+ .....+|+.. ..........-.+...++||+++
T Consensus 182 rivgLSATlpN~~evA~wL~a~~~~~~~rp~~l~~~v~~~~~~~~~~~~~k~~~~~~~~~~~~~v~~~~~~~~qvLvFv~ 261 (766)
T COG1204 182 RIVGLSATLPNAEEVADWLNAKLVESDWRPVPLRRGVPYVGAFLGADGKKKTWPLLIDNLALELVLESLAEGGQVLVFVH 261 (766)
T ss_pred EEEEEeeecCCHHHHHHHhCCcccccCCCCcccccCCccceEEEEecCccccccccchHHHHHHHHHHHhcCCeEEEEEe
Confidence 333367888899999999975311 2233444432 12222223333344557999999
Q ss_pred ecccHHHHHHHHHh-----------c----C---Cc-------------------EEEeeCCCChHHHHHHHHHhhCCCc
Q psy437 93 VSKECDSVAAALAQ-----------E----R---IN-------------------AISYHAGLADKLRNEVQMKWISNKV 135 (184)
Q Consensus 93 tr~~~e~~a~gL~~-----------~----g---i~-------------------~~vih~~~p~~~r~~~~~~f~~~~~ 135 (184)
+|+.++..|+.|.+ . + +. +..=|+|+|.+.|.++-+.|+.|++
T Consensus 262 sR~~a~~~A~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~l~e~v~~GvafHhAGL~~~~R~~vE~~Fr~g~i 341 (766)
T COG1204 262 SRKEAEKTAKKLRIKMSATLSDDEKIVLDEGASPILIPETPTSEDEELAELVLRGVAFHHAGLPREDRQLVEDAFRKGKI 341 (766)
T ss_pred cCchHHHHHHHHHHHHhhcCChhhhhhccccccccccccccccchHHHHHHHHhCccccccCCCHHHHHHHHHHHhcCCc
Confidence 99999999988862 0 0 00 1445899999999999999999999
Q ss_pred eEEEE-------EecCCccEEE----ecC-----CCCCccccccccccccCCcccccc
Q psy437 136 HLYNV-------WKIQWKRIIW----IHS-----LVLIKPDYLPPILDLRLGREDIRE 177 (184)
Q Consensus 136 ~v~va-------~D~~~vr~v~----~~~-----~p~~~e~y~~~i~~~~~~r~~~~~ 177 (184)
+|+|+ -+.|--+-|| -|+ .+-+.-+|+|=. +|+||.++-+
T Consensus 342 kVlv~TpTLA~GVNLPA~~VIIk~~~~y~~~~g~~~i~~~dv~QM~--GRAGRPg~d~ 397 (766)
T COG1204 342 KVLVSTPTLAAGVNLPARTVIIKDTRRYDPKGGIVDIPVLDVLQMA--GRAGRPGYDD 397 (766)
T ss_pred eEEEechHHhhhcCCcceEEEEeeeEEEcCCCCeEECchhhHhhcc--CcCCCCCcCC
Confidence 99999 2555433332 334 222334455544 6999975543
No 220
>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair]
Probab=95.82 E-value=0.037 Score=51.88 Aligned_cols=71 Identities=21% Similarity=0.311 Sum_probs=54.9
Q ss_pred HHHHHHHhhcCCCcEEEEeccHHHHHHHHHHHHhC----------------------------CCe-------------e
Q psy437 23 EVISLIKAKYSGQSGIVYCLTRKECDSVAAALAQE----------------------------RIN-------------A 61 (184)
Q Consensus 23 ~L~~~l~~~~~~~~~IIf~~tr~~~e~la~~L~~~----------------------------gi~-------------~ 61 (184)
.++..+... ..-|.|+|+-|++.|+..+..+... +++ .
T Consensus 369 ~iv~~l~~~-~~lP~I~F~FSr~~Ce~~a~~~~~ldl~~~~~~e~~i~~ii~~~i~~L~~ed~~lp~~~~~~~~~L~RGi 447 (1041)
T COG4581 369 EIVNKLDKD-NLLPAIVFSFSRRGCEEAAQILSTLDLVLTEEKERAIREIIDHAIGDLAEEDRELPLQILEISALLLRGI 447 (1041)
T ss_pred HHHhhhhhh-cCCceEEEEEchhhHHHHHHHhcccccccCCcHHHHHHHHHHHHHhhcChhhhcCcccHHHHHHHHhhhh
Confidence 345555443 6678999999999999988777511 121 3
Q ss_pred EEecCCCCHHHHHHHHHHHhccCceEEEEEeec
Q psy437 62 ISYHAGLADKLRNEVQMKWISNKVHVGHWTVVS 94 (184)
Q Consensus 62 ~~~hg~l~~~~R~~~~~~f~~g~~~vlVaT~tr 94 (184)
++.|+||=+..|..+...|..|-++|+.||.|+
T Consensus 448 avHH~GlLP~~K~~vE~Lfq~GLvkvvFaTeT~ 480 (1041)
T COG4581 448 AVHHAGLLPAIKELVEELFQEGLVKVVFATETF 480 (1041)
T ss_pred hhhccccchHHHHHHHHHHhccceeEEeehhhh
Confidence 578999999999999999999999999999944
No 221
>CHL00122 secA preprotein translocase subunit SecA; Validated
Probab=95.80 E-value=0.075 Score=49.02 Aligned_cols=100 Identities=11% Similarity=0.098 Sum_probs=68.6
Q ss_pred CCCCCCeEEEE-----EEccChHHHHHHHHHhh-cCCCcEEEEeccHHHHHHHHHHHHhCCCeeEEecCCCCHHHHHH-H
Q psy437 4 SFNRANLKYEI-----LPKKNVLKEVISLIKAK-YSGQSGIVYCLTRKECDSVAAALAQERINAISYHAGLADKLRNE-V 76 (184)
Q Consensus 4 s~~R~Nl~y~v-----~~~~~k~~~L~~~l~~~-~~~~~~IIf~~tr~~~e~la~~L~~~gi~~~~~hg~l~~~~R~~-~ 76 (184)
|.+||++.-.. .....|...+++.+.+. ..+.|++|-|.|.+..|.++..|.+.|++..++++.-.+.+++. +
T Consensus 388 Ptnkp~~R~d~~d~v~~t~~~K~~AI~~ei~~~~~~grPVLIgT~SIe~SE~ls~~L~~~gi~h~vLNAk~~~~~~EA~I 467 (870)
T CHL00122 388 PTHRPMLRKDLPDLIYKDELSKWRAIADECLQMHQTGRPILIGTTTIEKSELLSQLLKEYRLPHQLLNAKPENVRRESEI 467 (870)
T ss_pred CCCCCccceeCCCeEEeCHHHHHHHHHHHHHHHHhcCCCEEEeeCCHHHHHHHHHHHHHcCCccceeeCCCccchhHHHH
Confidence 66777765332 12224777777766443 36789999999999999999999999999999998632222222 2
Q ss_pred HHHHhccC-ceEEEEEeecccHHHHHHHHHhcCCcEEEeeCC
Q psy437 77 QMKWISNK-VHVGHWTVVSKECDSVAAALAQERINAISYHAG 117 (184)
Q Consensus 77 ~~~f~~g~-~~vlVaT~tr~~~e~~a~gL~~~gi~~~vih~~ 117 (184)
+.+ .|+ ..|.|||+ |..+|.+ ..+-++
T Consensus 468 IA~--AG~~G~VTIATN-----------MAGRGTD-I~Lgg~ 495 (870)
T CHL00122 468 VAQ--AGRKGSITIATN-----------MAGRGTD-IILGGN 495 (870)
T ss_pred HHh--cCCCCcEEEecc-----------ccCCCcC-eecCCc
Confidence 222 343 46889999 7777776 555554
No 222
>PRK12899 secA preprotein translocase subunit SecA; Reviewed
Probab=95.76 E-value=0.099 Score=48.68 Aligned_cols=127 Identities=10% Similarity=0.074 Sum_probs=84.9
Q ss_pred CCCCCCeEEEE-----EEccChHHHHHHHHHhh-cCCCcEEEEeccHHHHHHHHHHHHhCCCeeEEecCCCCHHHHHHHH
Q psy437 4 SFNRANLKYEI-----LPKKNVLKEVISLIKAK-YSGQSGIVYCLTRKECDSVAAALAQERINAISYHAGLADKLRNEVQ 77 (184)
Q Consensus 4 s~~R~Nl~y~v-----~~~~~k~~~L~~~l~~~-~~~~~~IIf~~tr~~~e~la~~L~~~gi~~~~~hg~l~~~~R~~~~ 77 (184)
|.+||.+.-.. .....|...+++.+.+. ..+.|++|-|.|.+..|.++..|.+.|++..++++.-...+-.-+-
T Consensus 532 Pt~kp~~r~d~~d~iy~t~~~k~~ai~~ei~~~~~~grPvLigt~si~~se~ls~~L~~~gi~h~vLNak~~~~Ea~iia 611 (970)
T PRK12899 532 PTFKPCLRIDHNDEFYMTEREKYHAIVAEIASIHRKGNPILIGTESVEVSEKLSRILRQNRIEHTVLNAKNHAQEAEIIA 611 (970)
T ss_pred CCCCCceeeeCCCcEecCHHHHHHHHHHHHHHHHhCCCCEEEEeCcHHHHHHHHHHHHHcCCcceecccchhhhHHHHHH
Confidence 56677655221 12234777777766543 3677899999999999999999999999998888863322222222
Q ss_pred HHHhccC-ceEEEEEeecccHHHHHHHHHhc---------CCcEEEeeCCCChHHHHHHHHHhhCC------CceEEEEE
Q psy437 78 MKWISNK-VHVGHWTVVSKECDSVAAALAQE---------RINAISYHAGLADKLRNEVQMKWISN------KVHLYNVW 141 (184)
Q Consensus 78 ~~f~~g~-~~vlVaT~tr~~~e~~a~gL~~~---------gi~~~vih~~~p~~~r~~~~~~f~~~------~~~v~va~ 141 (184)
..|+ ..|.|||+ .+.||-|+. |+ +||--..|.+.|-.-|=.+++| ....++.+
T Consensus 612 ---~AG~~g~VTIATN------mAGRGTDIkl~~~v~~~GGL--hVIgTer~es~Rid~Ql~GRagRQGdpGss~f~lSl 680 (970)
T PRK12899 612 ---GAGKLGAVTVATN------MAGRGTDIKLDEEAVAVGGL--YVIGTSRHQSRRIDRQLRGRCARLGDPGAAKFFLSF 680 (970)
T ss_pred ---hcCCCCcEEEeec------cccCCcccccCchHHhcCCc--EEEeeccCchHHHHHHHhcccccCCCCCceeEEEEc
Confidence 2343 46899999 445554432 22 7888889999988888765543 45566654
No 223
>KOG1000|consensus
Probab=95.73 E-value=0.1 Score=45.25 Aligned_cols=152 Identities=11% Similarity=0.100 Sum_probs=95.8
Q ss_pred hHHHHHHHHHhh-----cCCCcEEEEeccHHHHHHHHHHHHhCCCeeEEecCCCCHHHHHHHHHHHhcc-CceEEEEEee
Q psy437 20 VLKEVISLIKAK-----YSGQSGIVYCLTRKECDSVAAALAQERINAISYHAGLADKLRNEVQMKWISN-KVHVGHWTVV 93 (184)
Q Consensus 20 k~~~L~~~l~~~-----~~~~~~IIf~~tr~~~e~la~~L~~~gi~~~~~hg~l~~~~R~~~~~~f~~g-~~~vlVaT~t 93 (184)
|.....++|..+ .++.+.+|||......+.|...+.+.++...-+.|..++.+|....+.|... ++.|-|-..+
T Consensus 473 K~~av~eyi~~~~~l~d~~~~KflVFaHH~~vLd~Iq~~~~~r~vg~IRIDGst~s~~R~ll~qsFQ~seev~VAvlsIt 552 (689)
T KOG1000|consen 473 KAAAVCEYILENYFLPDAPPRKFLVFAHHQIVLDTIQVEVNKRKVGSIRIDGSTPSHRRTLLCQSFQTSEEVRVAVLSIT 552 (689)
T ss_pred ccHHHHHHHHhCcccccCCCceEEEEehhHHHHHHHHHHHHHcCCCeEEecCCCCchhHHHHHHHhccccceEEEEEEEe
Confidence 555566666441 2566789999999999999999999999999999999999999999999864 3443222221
Q ss_pred cccHHHHHHHHHhcCCcEEEeeCCCCh------HHHHHHHHHhhCCCceEEEEEecCCccEEEecCCCCCcccccccccc
Q psy437 94 SKECDSVAAALAQERINAISYHAGLAD------KLRNEVQMKWISNKVHLYNVWKIQWKRIIWIHSLVLIKPDYLPPILD 167 (184)
Q Consensus 94 r~~~e~~a~gL~~~gi~~~vih~~~p~------~~r~~~~~~f~~~~~~v~va~D~~~vr~v~~~~~p~~~e~y~~~i~~ 167 (184)
- ..-||+...-+ .|+-+.++- ..++.+||......+.|....-+.-.. .+..| ...+-++.+..
T Consensus 553 A-----~gvGLt~tAa~-~VVFaEL~wnPgvLlQAEDRaHRiGQkssV~v~ylvAKgT~D---dy~Wp-~l~~KL~vl~s 622 (689)
T KOG1000|consen 553 A-----AGVGLTLTAAS-VVVFAELHWNPGVLLQAEDRAHRIGQKSSVFVQYLVAKGTAD---DYMWP-MLQQKLDVLGS 622 (689)
T ss_pred e-----cccceeeeccc-eEEEEEecCCCceEEechhhhhhccccceeeEEEEEecCchH---HHHHH-HHHHHHHHHhh
Confidence 1 12366665555 444444443 568999999888776554432111000 00111 12234555555
Q ss_pred ccCCcccccccccc
Q psy437 168 LRLGREDIREGETM 181 (184)
Q Consensus 168 ~~~~r~~~~~~~~~ 181 (184)
+-+|.++++.-+.|
T Consensus 623 ~gl~s~~~~~~e~~ 636 (689)
T KOG1000|consen 623 VGLSSDTFRTAEKM 636 (689)
T ss_pred cccCcccceeeccc
Confidence 56666666544444
No 224
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=95.68 E-value=0.085 Score=47.80 Aligned_cols=93 Identities=14% Similarity=0.110 Sum_probs=66.5
Q ss_pred CCcEEEEeccHHHHHHHHHHHHhC-----CCeeEEecCCCCHH---------------------HHHHHHHHHhc-cCce
Q psy437 34 GQSGIVYCLTRKECDSVAAALAQE-----RINAISYHAGLADK---------------------LRNEVQMKWIS-NKVH 86 (184)
Q Consensus 34 ~~~~IIf~~tr~~~e~la~~L~~~-----gi~~~~~hg~l~~~---------------------~R~~~~~~f~~-g~~~ 86 (184)
+.+++|||.++..|..+.+.|.+. +..+.+++++.+.+ ....++++|+. +..+
T Consensus 514 ~~kamvv~~sr~~a~~~~~~l~~~~~~~~~~~~vv~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fk~~~~~~ 593 (667)
T TIGR00348 514 KFKAMVVAISRYACVEEKNALDEELNEKFEASAIVMTGKESDDAEIRDYNKHIRTKFDKSDGFEIYYKDLERFKKEENPK 593 (667)
T ss_pred cCceeEEEecHHHHHHHHHHHHhhcccccCCeeEEecCCccchhHHHHHHHHhccccccchhhhHHHHHHHHhcCCCCce
Confidence 478999999999999999988654 34566666654332 22468888876 6789
Q ss_pred EEEEEeecccHHHHHHHHHhcCCcEEEeeCCCChHHHHHHHHHhhCCC
Q psy437 87 VGHWTVVSKECDSVAAALAQERINAISYHAGLADKLRNEVQMKWISNK 134 (184)
Q Consensus 87 vlVaT~tr~~~e~~a~gL~~~gi~~~vih~~~p~~~r~~~~~~f~~~~ 134 (184)
+||.++ .+-.|.|.|.+.++.+ +-|-..-..+|...|.+.
T Consensus 594 ilIVvd------mllTGFDaP~l~tLyl--dKplk~h~LlQai~R~nR 633 (667)
T TIGR00348 594 LLIVVD------MLLTGFDAPILNTLYL--DKPLKYHGLLQAIARTNR 633 (667)
T ss_pred EEEEEc------ccccccCCCccceEEE--eccccccHHHHHHHHhcc
Confidence 999999 8888999999985444 344444456776655554
No 225
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=95.57 E-value=0.16 Score=38.40 Aligned_cols=56 Identities=13% Similarity=0.085 Sum_probs=42.9
Q ss_pred CCCcEEEEeccHHHHHHHHHHHHhC----CCeeEEecCCCCHHHHHHHHHHHhccCceEEEEEe
Q psy437 33 SGQSGIVYCLTRKECDSVAAALAQE----RINAISYHAGLADKLRNEVQMKWISNKVHVGHWTV 92 (184)
Q Consensus 33 ~~~~~IIf~~tr~~~e~la~~L~~~----gi~~~~~hg~l~~~~R~~~~~~f~~g~~~vlVaT~ 92 (184)
.+.++||.|+|+..+.++++.+... ++.+..++|+.+..++....+ +..+|+|+|+
T Consensus 68 ~~~~viii~p~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~iiv~T~ 127 (203)
T cd00268 68 DGPQALILAPTRELALQIAEVARKLGKHTNLKVVVIYGGTSIDKQIRKLK----RGPHIVVATP 127 (203)
T ss_pred CCceEEEEcCCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhc----CCCCEEEECh
Confidence 3457899999999999988777643 778888999988765543332 5678999998
No 226
>PRK12902 secA preprotein translocase subunit SecA; Reviewed
Probab=95.52 E-value=0.11 Score=48.15 Aligned_cols=100 Identities=14% Similarity=0.089 Sum_probs=68.8
Q ss_pred CCCCCCeEEEEE-----EccChHHHHHHHHHhh-cCCCcEEEEeccHHHHHHHHHHHHhCCCeeEEecCCCCHHHHHH-H
Q psy437 4 SFNRANLKYEIL-----PKKNVLKEVISLIKAK-YSGQSGIVYCLTRKECDSVAAALAQERINAISYHAGLADKLRNE-V 76 (184)
Q Consensus 4 s~~R~Nl~y~v~-----~~~~k~~~L~~~l~~~-~~~~~~IIf~~tr~~~e~la~~L~~~gi~~~~~hg~l~~~~R~~-~ 76 (184)
|.+||.+.-... ....|...+++.+.+. ..+.|++|-|.|.+..|.++..|.+.|++..++++.-.+.+++. +
T Consensus 403 PTnkP~~R~d~~d~vy~t~~~K~~Ai~~ei~~~~~~GrPVLIgT~SVe~SE~ls~~L~~~gi~h~vLNAk~~~~~~EA~I 482 (939)
T PRK12902 403 PTNRPRRRQDWPDQVYKTEIAKWRAVANETAEMHKQGRPVLVGTTSVEKSELLSALLQEQGIPHNLLNAKPENVEREAEI 482 (939)
T ss_pred CCCCCeeeecCCCeEEcCHHHHHHHHHHHHHHHHhCCCCEEEeeCCHHHHHHHHHHHHHcCCchheeeCCCcchHhHHHH
Confidence 567777653321 2235788888777644 36789999999999999999999999999999998622223332 2
Q ss_pred HHHHhccC-ceEEEEEeecccHHHHHHHHHhcCCcEEEeeCC
Q psy437 77 QMKWISNK-VHVGHWTVVSKECDSVAAALAQERINAISYHAG 117 (184)
Q Consensus 77 ~~~f~~g~-~~vlVaT~tr~~~e~~a~gL~~~gi~~~vih~~ 117 (184)
+.+ .|+ ..|-|||+ |..+|-+ ..+-++
T Consensus 483 Ia~--AG~~GaVTIATN-----------MAGRGTD-IkLgGn 510 (939)
T PRK12902 483 VAQ--AGRKGAVTIATN-----------MAGRGTD-IILGGN 510 (939)
T ss_pred HHh--cCCCCcEEEecc-----------CCCCCcC-EeeCCc
Confidence 222 343 36789999 7777766 555444
No 227
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]
Probab=95.48 E-value=0.18 Score=46.40 Aligned_cols=95 Identities=12% Similarity=0.018 Sum_probs=71.0
Q ss_pred ChHHHHHHHH-Hhh-cCCC--cEEEEeccHHHHHHHHHHHHhCCCeeEEecCCCCHHHHHHHHHHHhcc-CceEE-EEEe
Q psy437 19 NVLKEVISLI-KAK-YSGQ--SGIVYCLTRKECDSVAAALAQERINAISYHAGLADKLRNEVQMKWISN-KVHVG-HWTV 92 (184)
Q Consensus 19 ~k~~~L~~~l-~~~-~~~~--~~IIf~~tr~~~e~la~~L~~~gi~~~~~hg~l~~~~R~~~~~~f~~g-~~~vl-VaT~ 92 (184)
.|...+.+++ ... ..+. +.++|++.....+-+...|...++....++|+++.+.|...++.|.++ ...++ +.+.
T Consensus 692 ~k~~~l~~ll~~~~~~~~~~~kvlifsq~t~~l~il~~~l~~~~~~~~~ldG~~~~~~r~~~i~~f~~~~~~~v~lls~k 771 (866)
T COG0553 692 GKLQALDELLLDKLLEEGHYHKVLIFSQFTPVLDLLEDYLKALGIKYVRLDGSTPAKRRQELIDRFNADEEEKVFLLSLK 771 (866)
T ss_pred hHHHHHHHHHHHHHHhhcccccEEEEeCcHHHHHHHHHHHHhcCCcEEEEeCCCChhhHHHHHHHhhcCCCCceEEEEec
Confidence 4666666666 222 1344 799999999999999999999998899999999999999999999996 34444 4444
Q ss_pred ecccHHHHHHHHHhcCCcEEEeeCCCCh
Q psy437 93 VSKECDSVAAALAQERINAISYHAGLAD 120 (184)
Q Consensus 93 tr~~~e~~a~gL~~~gi~~~vih~~~p~ 120 (184)
+ ...||+--+-+ .|+++|..-
T Consensus 772 a------gg~glnLt~a~-~vi~~d~~w 792 (866)
T COG0553 772 A------GGLGLNLTGAD-TVILFDPWW 792 (866)
T ss_pred c------cccceeecccc-eEEEecccc
Confidence 1 12355555666 999999843
No 228
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=95.31 E-value=0.097 Score=49.19 Aligned_cols=80 Identities=9% Similarity=-0.063 Sum_probs=58.3
Q ss_pred CCCcEEEEeccHHHHHHHHHHHHhCCCe--eEEecCCCCHHHHHHHHHHHhccCceEEEEEeecccHHHHHHHHHhcCC-
Q psy437 33 SGQSGIVYCLTRKECDSVAAALAQERIN--AISYHAGLADKLRNEVQMKWISNKVHVGHWTVVSKECDSVAAALAQERI- 109 (184)
Q Consensus 33 ~~~~~IIf~~tr~~~e~la~~L~~~gi~--~~~~hg~l~~~~R~~~~~~f~~g~~~vlVaT~tr~~~e~~a~gL~~~gi- 109 (184)
.+++++|+++|.+..+.+++.|...... ...+-=|++...|.+++++|++++-.||++|.++ ++|+|.+|=
T Consensus 751 ~~g~~LVLFtSy~~l~~v~~~l~~~~~~~~~~ll~Qg~~~~~r~~l~~~F~~~~~~iLlG~~sF------wEGVD~pg~~ 824 (928)
T PRK08074 751 TKGRMLVLFTSYEMLKKTYYNLKNEEELEGYVLLAQGVSSGSRARLTKQFQQFDKAILLGTSSF------WEGIDIPGDE 824 (928)
T ss_pred CCCCEEEEECCHHHHHHHHHHHhhcccccCceEEecCCCCCCHHHHHHHHHhcCCeEEEecCcc------cCccccCCCc
Confidence 5678999999999999999999754221 1122224444578999999999888899999955 778888874
Q ss_pred -cEEEeeCCCC
Q psy437 110 -NAISYHAGLA 119 (184)
Q Consensus 110 -~~~vih~~~p 119 (184)
+ .|+=.++|
T Consensus 825 l~-~viI~kLP 834 (928)
T PRK08074 825 LS-CLVIVRLP 834 (928)
T ss_pred eE-EEEEecCC
Confidence 4 44445544
No 229
>KOG0391|consensus
Probab=95.26 E-value=0.26 Score=46.99 Aligned_cols=116 Identities=10% Similarity=0.154 Sum_probs=83.0
Q ss_pred ChHHHHHHHHHhh-cCCCcEEEEeccHHHHHHHHHHHHhCCCeeEEecCCCCHHHHHHHHHHHhccCc--eEEEEEeecc
Q psy437 19 NVLKEVISLIKAK-YSGQSGIVYCLTRKECDSVAAALAQERINAISYHAGLADKLRNEVQMKWISNKV--HVGHWTVVSK 95 (184)
Q Consensus 19 ~k~~~L~~~l~~~-~~~~~~IIf~~tr~~~e~la~~L~~~gi~~~~~hg~l~~~~R~~~~~~f~~g~~--~vlVaT~tr~ 95 (184)
.|++.|.-+|.+. ..+..++||+.-.+..+-+-..|..+|+--.-+.|..+-++|...+++|-.+.- ..|..|.+.+
T Consensus 1260 GKLQtLAiLLqQLk~eghRvLIfTQMtkmLDVLeqFLnyHgylY~RLDg~t~vEqRQaLmerFNaD~RIfcfILSTrSgg 1339 (1958)
T KOG0391|consen 1260 GKLQTLAILLQQLKSEGHRVLIFTQMTKMLDVLEQFLNYHGYLYVRLDGNTSVEQRQALMERFNADRRIFCFILSTRSGG 1339 (1958)
T ss_pred chHHHHHHHHHHHHhcCceEEehhHHHHHHHHHHHHHhhcceEEEEecCCccHHHHHHHHHHhcCCCceEEEEEeccCCc
Confidence 4666666555432 256789999999999999999999999988889999999999999999987542 3455566442
Q ss_pred cHHHHHHHHHhcCCcEEE-eeCC----CChHHHHHHHHHhhCCCceEEEE
Q psy437 96 ECDSVAAALAQERINAIS-YHAG----LADKLRNEVQMKWISNKVHLYNV 140 (184)
Q Consensus 96 ~~e~~a~gL~~~gi~~~v-ih~~----~p~~~r~~~~~~f~~~~~~v~va 140 (184)
- |++--|-+++| |--| |.....++-||.++..++.|+=.
T Consensus 1340 v------GiNLtgADTVvFYDsDwNPtMDaQAQDrChRIGqtRDVHIYRL 1383 (1958)
T KOG0391|consen 1340 V------GINLTGADTVVFYDSDWNPTMDAQAQDRCHRIGQTRDVHIYRL 1383 (1958)
T ss_pred c------ccccccCceEEEecCCCCchhhhHHHHHHHhhcCccceEEEEe
Confidence 2 45555777322 3333 45566677777777777777654
No 230
>PRK12901 secA preprotein translocase subunit SecA; Reviewed
Probab=95.20 E-value=0.12 Score=48.51 Aligned_cols=130 Identities=15% Similarity=0.059 Sum_probs=85.4
Q ss_pred CCCCCCeEEE-----EEEccChHHHHHHHHHhh-cCCCcEEEEeccHHHHHHHHHHHHhCCCeeEEecCCCCHHHHHHHH
Q psy437 4 SFNRANLKYE-----ILPKKNVLKEVISLIKAK-YSGQSGIVYCLTRKECDSVAAALAQERINAISYHAGLADKLRNEVQ 77 (184)
Q Consensus 4 s~~R~Nl~y~-----v~~~~~k~~~L~~~l~~~-~~~~~~IIf~~tr~~~e~la~~L~~~gi~~~~~hg~l~~~~R~~~~ 77 (184)
|.+||.+.-. ......|...+++.+.+. ..+.|++|-|.|.+..|.++..|...|++..++.+....++-.-+-
T Consensus 592 PTnrP~~R~D~~D~vy~t~~eK~~Aii~ei~~~~~~GrPVLVGT~SVe~SE~lS~~L~~~gI~H~VLNAK~h~~EAeIVA 671 (1112)
T PRK12901 592 PTNRPIARKDKEDLVYKTKREKYNAVIEEITELSEAGRPVLVGTTSVEISELLSRMLKMRKIPHNVLNAKLHQKEAEIVA 671 (1112)
T ss_pred CCCCCcceecCCCeEecCHHHHHHHHHHHHHHHHHCCCCEEEEeCcHHHHHHHHHHHHHcCCcHHHhhccchhhHHHHHH
Confidence 5667765532 112235788888777653 3678999999999999999999999999988888875544433333
Q ss_pred HHHhccCceEEEEEeecccHHHHHHHHHhc---CCc----EEEeeCCCChHHHHHHHHHhhCC------CceEEEEE
Q psy437 78 MKWISNKVHVGHWTVVSKECDSVAAALAQE---RIN----AISYHAGLADKLRNEVQMKWISN------KVHLYNVW 141 (184)
Q Consensus 78 ~~f~~g~~~vlVaT~tr~~~e~~a~gL~~~---gi~----~~vih~~~p~~~r~~~~~~f~~~------~~~v~va~ 141 (184)
+.=. ...|-|||+ .+.||=|+. ++. -+||--..+.+.|---|=.+++| ..+.++.+
T Consensus 672 ~AG~--~GaVTIATN------MAGRGTDIkLg~~V~e~GGL~VIgTerheSrRID~QLrGRaGRQGDPGsS~f~lSL 740 (1112)
T PRK12901 672 EAGQ--PGTVTIATN------MAGRGTDIKLSPEVKAAGGLAIIGTERHESRRVDRQLRGRAGRQGDPGSSQFYVSL 740 (1112)
T ss_pred hcCC--CCcEEEecc------CcCCCcCcccchhhHHcCCCEEEEccCCCcHHHHHHHhcccccCCCCCcceEEEEc
Confidence 3322 235789999 444453332 111 17777888888887777665543 34555553
No 231
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
Probab=95.04 E-value=0.094 Score=47.22 Aligned_cols=86 Identities=17% Similarity=0.072 Sum_probs=61.2
Q ss_pred HHHHHHHhhcCCCcEEEEeccHHHHHHHHHHHHhCCCe-eEEecCCCCHHHHHHHHHHHhccCc-eEEEEEeecccHHHH
Q psy437 23 EVISLIKAKYSGQSGIVYCLTRKECDSVAAALAQERIN-AISYHAGLADKLRNEVQMKWISNKV-HVGHWTVVSKECDSV 100 (184)
Q Consensus 23 ~L~~~l~~~~~~~~~IIf~~tr~~~e~la~~L~~~gi~-~~~~hg~l~~~~R~~~~~~f~~g~~-~vlVaT~tr~~~e~~ 100 (184)
.|..++.. .++.++||++|.+..+.+++.|...... ....+|. ..+...+++|..+.- .++|+|. ..
T Consensus 470 ~i~~~~~~--~~~~~lvlF~Sy~~l~~~~~~~~~~~~~~~v~~q~~---~~~~~~l~~f~~~~~~~~lv~~g------sf 538 (654)
T COG1199 470 YLREILKA--SPGGVLVLFPSYEYLKRVAERLKDERSTLPVLTQGE---DEREELLEKFKASGEGLILVGGG------SF 538 (654)
T ss_pred HHHHHHhh--cCCCEEEEeccHHHHHHHHHHHhhcCccceeeecCC---CcHHHHHHHHHHhcCCeEEEeec------cc
Confidence 34444433 4568999999999999999999876542 3344444 456689999998665 8999999 66
Q ss_pred HHHHHhcCCcE-EEeeCCCC
Q psy437 101 AAALAQERINA-ISYHAGLA 119 (184)
Q Consensus 101 a~gL~~~gi~~-~vih~~~p 119 (184)
++|+|.+|=.. .|+=.++|
T Consensus 539 ~EGVD~~g~~l~~vvI~~lP 558 (654)
T COG1199 539 WEGVDFPGDALRLVVIVGLP 558 (654)
T ss_pred cCcccCCCCCeeEEEEEecC
Confidence 88999887431 45555554
No 232
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=95.02 E-value=0.28 Score=45.51 Aligned_cols=121 Identities=12% Similarity=0.029 Sum_probs=86.2
Q ss_pred CcEEEEeccHHHHHHHHHHHHh--------CCCeeEEecCCC-------CHHHHHHHHHHHhccCceEEEEEeecccHHH
Q psy437 35 QSGIVYCLTRKECDSVAAALAQ--------ERINAISYHAGL-------ADKLRNEVQMKWISNKVHVGHWTVVSKECDS 99 (184)
Q Consensus 35 ~~~IIf~~tr~~~e~la~~L~~--------~gi~~~~~hg~l-------~~~~R~~~~~~f~~g~~~vlVaT~tr~~~e~ 99 (184)
-+.||-..| -+++.+++.|.. ..+++..++..- ...-+..+......+...|||+-++.++.+.
T Consensus 196 LKiIimSAT-ld~~rfs~~f~~apvi~i~GR~fPVei~Y~~~~~~d~~l~~ai~~~v~~~~~~~~GdILvFLpG~~EI~~ 274 (845)
T COG1643 196 LKLIIMSAT-LDAERFSAYFGNAPVIEIEGRTYPVEIRYLPEAEADYILLDAIVAAVDIHLREGSGSILVFLPGQREIER 274 (845)
T ss_pred ceEEEEecc-cCHHHHHHHcCCCCEEEecCCccceEEEecCCCCcchhHHHHHHHHHHHhccCCCCCEEEECCcHHHHHH
Confidence 344554444 457888888874 245666655322 2223444555555678899999999999999
Q ss_pred HHHHHHh----cCCcEEEeeCCCChHHHHHHHHHhhCCCceEEEE-------EecCCccEEEecCCCC
Q psy437 100 VAAALAQ----ERINAISYHAGLADKLRNEVQMKWISNKVHLYNV-------WKIQWKRIIWIHSLVL 156 (184)
Q Consensus 100 ~a~gL~~----~gi~~~vih~~~p~~~r~~~~~~f~~~~~~v~va-------~D~~~vr~v~~~~~p~ 156 (184)
.++.|.. +.+.++-+|+.+|.+.-..+-+--..|+-+|++| +-||+||+|+.-.+.+
T Consensus 275 ~~~~L~~~~l~~~~~i~PLy~~L~~~eQ~rvF~p~~~~~RKVVlATNIAETSLTI~gIr~VIDsG~ak 342 (845)
T COG1643 275 TAEWLEKAELGDDLEILPLYGALSAEEQVRVFEPAPGGKRKVVLATNIAETSLTIPGIRYVIDSGLAK 342 (845)
T ss_pred HHHHHHhccccCCcEEeeccccCCHHHHHhhcCCCCCCcceEEEEccccccceeeCCeEEEecCCccc
Confidence 9999987 5566788999999998877666555565558888 5999999998765544
No 233
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=94.65 E-value=0.35 Score=43.54 Aligned_cols=74 Identities=5% Similarity=-0.007 Sum_probs=54.7
Q ss_pred HHHHHHHHhhcCCCcEEEEeccHHHHHHHHHHHHhCCCe-eEEecCCCCHHHHHHHHHHHhcc----CceEEEEEeeccc
Q psy437 22 KEVISLIKAKYSGQSGIVYCLTRKECDSVAAALAQERIN-AISYHAGLADKLRNEVQMKWISN----KVHVGHWTVVSKE 96 (184)
Q Consensus 22 ~~L~~~l~~~~~~~~~IIf~~tr~~~e~la~~L~~~gi~-~~~~hg~l~~~~R~~~~~~f~~g----~~~vlVaT~tr~~ 96 (184)
+.+..++.. ..+.++|.+.|.+..+.+++.|... ++ ...+.|..+ .|..++++|+.. +..||++|.++
T Consensus 460 ~~~~~~~~~--~~G~~lvLfTS~~~~~~~~~~l~~~-l~~~~l~qg~~~--~~~~l~~~f~~~~~~~~~~vL~gt~sf-- 532 (636)
T TIGR03117 460 LSTAAILRK--AQGGTLVLTTAFSHISAIGQLVELG-IPAEIVIQSEKN--RLASAEQQFLALYANGIQPVLIAAGGA-- 532 (636)
T ss_pred HHHHHHHHH--cCCCEEEEechHHHHHHHHHHHHhh-cCCCEEEeCCCc--cHHHHHHHHHHhhcCCCCcEEEeCCcc--
Confidence 445555543 5678999999999999999999753 32 334455432 467789999974 67899999955
Q ss_pred HHHHHHHHHh
Q psy437 97 CDSVAAALAQ 106 (184)
Q Consensus 97 ~e~~a~gL~~ 106 (184)
+.|+|.
T Consensus 533 ----weGvDv 538 (636)
T TIGR03117 533 ----WTGIDL 538 (636)
T ss_pred ----cccccc
Confidence 789999
No 234
>KOG0385|consensus
Probab=94.40 E-value=0.42 Score=43.64 Aligned_cols=108 Identities=9% Similarity=0.060 Sum_probs=75.4
Q ss_pred HHHHHHHHHhhcCCCcEEEEeccHHHHHHHHHHHHhCCCeeEEecCCCCHHHHHHHHHHHhccCc---eEEEEEeecccH
Q psy437 21 LKEVISLIKAKYSGQSGIVYCLTRKECDSVAAALAQERINAISYHAGLADKLRNEVQMKWISNKV---HVGHWTVVSKEC 97 (184)
Q Consensus 21 ~~~L~~~l~~~~~~~~~IIf~~tr~~~e~la~~L~~~gi~~~~~hg~l~~~~R~~~~~~f~~g~~---~vlVaT~tr~~~ 97 (184)
++.|+..|.+ .+.+++||..-....+.+-.+....++...-+.|.++.++|...++.|-.... -.|+.|.
T Consensus 476 LDkLL~~Lk~--~GhRVLIFSQmt~mLDILeDyc~~R~y~ycRiDGSt~~eeR~~aI~~fn~~~s~~FiFlLSTR----- 548 (971)
T KOG0385|consen 476 LDKLLPKLKE--QGHRVLIFSQMTRMLDILEDYCMLRGYEYCRLDGSTSHEEREDAIEAFNAPPSEKFIFLLSTR----- 548 (971)
T ss_pred HHHHHHHHHh--CCCeEEEeHHHHHHHHHHHHHHHhcCceeEeecCCCCcHHHHHHHHhcCCCCcceEEEEEecc-----
Confidence 3444444544 67889999998888999999999999999999999999999999999987543 2355565
Q ss_pred HHHHHHHHhc--CCcEEEeeCCC---Ch---HHHHHHHHHhhCCCceEEE
Q psy437 98 DSVAAALAQE--RINAISYHAGL---AD---KLRNEVQMKWISNKVHLYN 139 (184)
Q Consensus 98 e~~a~gL~~~--gi~~~vih~~~---p~---~~r~~~~~~f~~~~~~v~v 139 (184)
|.||.+. .-+ .||=||- || ..-+..||.+....|.|+=
T Consensus 549 ---AGGLGINL~aAD-tVIlyDSDWNPQ~DLQAmDRaHRIGQ~K~V~V~R 594 (971)
T KOG0385|consen 549 ---AGGLGINLTAAD-TVILYDSDWNPQVDLQAMDRAHRIGQKKPVVVYR 594 (971)
T ss_pred ---cccccccccccc-EEEEecCCCCchhhhHHHHHHHhhCCcCceEEEE
Confidence 7777554 444 5554443 33 3345555556555554443
No 235
>KOG1002|consensus
Probab=93.72 E-value=0.21 Score=43.46 Aligned_cols=65 Identities=8% Similarity=0.149 Sum_probs=55.2
Q ss_pred ChHHHHHHHHH---hhcCCCcEEEEeccHHHHHHHHHHHHhCCCeeEEecCCCCHHHHHHHHHHHhcc
Q psy437 19 NVLKEVISLIK---AKYSGQSGIVYCLTRKECDSVAAALAQERINAISYHAGLADKLRNEVQMKWISN 83 (184)
Q Consensus 19 ~k~~~L~~~l~---~~~~~~~~IIf~~tr~~~e~la~~L~~~gi~~~~~hg~l~~~~R~~~~~~f~~g 83 (184)
.|++.|.+.|. +.....++|||..-....+-+.-.|.+.|+++.-+-|+|++..|..+++.|+++
T Consensus 620 TKIEAL~EEl~~l~~rd~t~KsIVFSQFTSmLDLi~~rL~kaGfscVkL~GsMs~~ardatik~F~nd 687 (791)
T KOG1002|consen 620 TKIEALVEELYFLRERDRTAKSIVFSQFTSMLDLIEWRLGKAGFSCVKLVGSMSPAARDATIKYFKND 687 (791)
T ss_pred hHHHHHHHHHHHHHHcccchhhhhHHHHHHHHHHHHHHhhccCceEEEeccCCChHHHHHHHHHhccC
Confidence 47888877653 223456789999888888889999999999999999999999999999999985
No 236
>KOG0952|consensus
Probab=93.69 E-value=0.45 Score=44.82 Aligned_cols=136 Identities=15% Similarity=0.144 Sum_probs=86.2
Q ss_pred EeccHHHHHHHHHHHHhC---CC--------------eeEEecCC--CCH-----HHHHHHHHHHhccCceEEEEEeecc
Q psy437 40 YCLTRKECDSVAAALAQE---RI--------------NAISYHAG--LAD-----KLRNEVQMKWISNKVHVGHWTVVSK 95 (184)
Q Consensus 40 f~~tr~~~e~la~~L~~~---gi--------------~~~~~hg~--l~~-----~~R~~~~~~f~~g~~~vlVaT~tr~ 95 (184)
...|-..-+++|.+|+-. |+ ...-+-+. +.+ +....-..+|.....+|+|++.+|+
T Consensus 281 LSATlPN~eDvA~fL~vn~~~glfsFd~~yRPvpL~~~~iG~k~~~~~~~~~~~d~~~~~kv~e~~~~g~qVlvFvhsR~ 360 (1230)
T KOG0952|consen 281 LSATLPNYEDVARFLRVNPYAGLFSFDQRYRPVPLTQGFIGIKGKKNRQQKKNIDEVCYDKVVEFLQEGHQVLVFVHSRN 360 (1230)
T ss_pred eeccCCCHHHHHHHhcCCCccceeeecccccccceeeeEEeeecccchhhhhhHHHHHHHHHHHHHHcCCeEEEEEecCh
Confidence 567888889999999752 32 11111222 111 1122334456667789999999999
Q ss_pred cHHHHHHHHHhcCC----c-------------------EEEeeCCCChHHHHHHHHHhhCCCceEEEE-----E--ecCC
Q psy437 96 ECDSVAAALAQERI----N-------------------AISYHAGLADKLRNEVQMKWISNKVHLYNV-----W--KIQW 145 (184)
Q Consensus 96 ~~e~~a~gL~~~gi----~-------------------~~vih~~~p~~~r~~~~~~f~~~~~~v~va-----~--D~~~ 145 (184)
.+-+.|+-|...+. . ..+=|+||+-+.|.++-+.|..|.+.|+++ + +.|.
T Consensus 361 ~Ti~tA~~l~~~a~~~g~~~~f~~~~~~k~l~elf~~g~~iHhAGm~r~DR~l~E~~F~~G~i~vL~cTaTLAwGVNLPA 440 (1230)
T KOG0952|consen 361 ETIRTAKKLRERAETNGEKDLFLPSPRNKQLKELFQQGMGIHHAGMLRSDRQLVEKEFKEGHIKVLCCTATLAWGVNLPA 440 (1230)
T ss_pred HHHHHHHHHHHHHHhcCcccccCCChhhHHHHHHHHhhhhhcccccchhhHHHHHHHHhcCCceEEEecceeeeccCCcc
Confidence 98888888743211 1 156799999999999999999999999998 2 5554
Q ss_pred ccEEE-ecCCCCCccccc--------cccccccCCccccc
Q psy437 146 KRIIW-IHSLVLIKPDYL--------PPILDLRLGREDIR 176 (184)
Q Consensus 146 vr~v~-~~~~p~~~e~y~--------~~i~~~~~~r~~~~ 176 (184)
---+| ..+...+.+.-+ ..|. +|+||..+.
T Consensus 441 ~aViIKGT~~ydsskg~f~dlgilDVlQif-GRAGRPqFd 479 (1230)
T KOG0952|consen 441 YAVIIKGTQVYDSSKGSFVDLGILDVLQIF-GRAGRPQFD 479 (1230)
T ss_pred eEEEecCCcccccccCceeeehHHHHHHHH-hccCCCCCC
Confidence 33332 223333333222 2222 699998554
No 237
>KOG0923|consensus
Probab=93.66 E-value=0.23 Score=44.65 Aligned_cols=124 Identities=15% Similarity=0.144 Sum_probs=86.9
Q ss_pred eEEEEEEccChHHHHHHHHHhhc---CCCcEEEEeccHHHHHHHHHHHHhC---------CCeeEEecCCCCHHHHHHHH
Q psy437 10 LKYEILPKKNVLKEVISLIKAKY---SGQSGIVYCLTRKECDSVAAALAQE---------RINAISYHAGLADKLRNEVQ 77 (184)
Q Consensus 10 l~y~v~~~~~k~~~L~~~l~~~~---~~~~~IIf~~tr~~~e~la~~L~~~---------gi~~~~~hg~l~~~~R~~~~ 77 (184)
++|.-.|..+-++..+.-+.+.+ +.+-.|||-.-.+..+...+.|+.. .+-+..+|++|+++...++.
T Consensus 446 i~Yt~~PEAdYldAai~tVlqIH~tqp~GDILVFltGQeEIEt~~e~l~~~~~~LGski~eliv~PiYaNLPselQakIF 525 (902)
T KOG0923|consen 446 IFYTKAPEADYLDAAIVTVLQIHLTQPLGDILVFLTGQEEIETVKENLKERCRRLGSKIRELIVLPIYANLPSELQAKIF 525 (902)
T ss_pred eecccCCchhHHHHHHhhheeeEeccCCccEEEEeccHHHHHHHHHHHHHHHHHhccccceEEEeeccccCChHHHHhhc
Confidence 55655566555554444443322 4445688876666666666666532 34577899999999999998
Q ss_pred HHHhccCceEEEEEeecccHHHHHHHHHhcCCcEEEeeCCCCh------------------HHHHHHHHHhhCC------
Q psy437 78 MKWISNKVHVGHWTVVSKECDSVAAALAQERINAISYHAGLAD------------------KLRNEVQMKWISN------ 133 (184)
Q Consensus 78 ~~f~~g~~~vlVaT~tr~~~e~~a~gL~~~gi~~~vih~~~p~------------------~~r~~~~~~f~~~------ 133 (184)
+---.|--+|+.||+ .+-..|.++||. +||--|+.+ +.-+..||..+.|
T Consensus 526 ePtP~gaRKVVLATN------IAETSlTIdgI~-yViDpGf~K~nsynprtGmesL~v~piSKAsA~QRaGRAGRtgPGK 598 (902)
T KOG0923|consen 526 EPTPPGARKVVLATN------IAETSLTIDGIK-YVIDPGFVKQNSYNPRTGMESLLVTPISKASANQRAGRAGRTGPGK 598 (902)
T ss_pred CCCCCCceeEEEeec------chhhceeecCeE-EEecCccccccCcCCCcCceeEEEeeechhhhhhhccccCCCCCCc
Confidence 888889999999999 666788999998 998887766 4456777776655
Q ss_pred CceEEEE
Q psy437 134 KVHLYNV 140 (184)
Q Consensus 134 ~~~v~va 140 (184)
|.+++.+
T Consensus 599 CfRLYt~ 605 (902)
T KOG0923|consen 599 CFRLYTA 605 (902)
T ss_pred eEEeech
Confidence 3466665
No 238
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=93.17 E-value=0.85 Score=33.00 Aligned_cols=58 Identities=16% Similarity=0.082 Sum_probs=43.0
Q ss_pred CCcEEEEeccHHHHHHHHHHHHhC----CCeeEEecCCCCHHHHHHHHHHHhccCceEEEEEeec
Q psy437 34 GQSGIVYCLTRKECDSVAAALAQE----RINAISYHAGLADKLRNEVQMKWISNKVHVGHWTVVS 94 (184)
Q Consensus 34 ~~~~IIf~~tr~~~e~la~~L~~~----gi~~~~~hg~l~~~~R~~~~~~f~~g~~~vlVaT~tr 94 (184)
...+|+.+|++..++++...+... ++++..+|++.+... -...+..++..|+|+|+.+
T Consensus 44 ~~~~lii~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~ilv~T~~~ 105 (169)
T PF00270_consen 44 DARVLIIVPTRALAEQQFERLRKFFSNTNVRVVLLHGGQSISE---DQREVLSNQADILVTTPEQ 105 (169)
T ss_dssp SSEEEEEESSHHHHHHHHHHHHHHTTTTTSSEEEESTTSCHHH---HHHHHHHTTSSEEEEEHHH
T ss_pred CceEEEEeecccccccccccccccccccccccccccccccccc---cccccccccccccccCcch
Confidence 358899999999999999888764 457888899887431 1222226788999999943
No 239
>KOG0384|consensus
Probab=93.06 E-value=0.47 Score=45.26 Aligned_cols=108 Identities=11% Similarity=0.121 Sum_probs=80.0
Q ss_pred HHHHHHHHhhcCCCcEEEEeccHHHHHHHHHHHHhCCCeeEEecCCCCHHHHHHHHHHHhc---cCceEEEEEeecccHH
Q psy437 22 KEVISLIKAKYSGQSGIVYCLTRKECDSVAAALAQERINAISYHAGLADKLRNEVQMKWIS---NKVHVGHWTVVSKECD 98 (184)
Q Consensus 22 ~~L~~~l~~~~~~~~~IIf~~tr~~~e~la~~L~~~gi~~~~~hg~l~~~~R~~~~~~f~~---g~~~vlVaT~tr~~~e 98 (184)
+.|+..|++ .+.+++||..-....+.|+++|...+++.--+.|++..+.|...++.|-. ...-.|.+|.
T Consensus 689 DKLL~rLk~--~GHrVLIFSQMVRmLDIL~eYL~~r~ypfQRLDGsvrgelRq~AIDhFnap~SddFvFLLSTR------ 760 (1373)
T KOG0384|consen 689 DKLLPRLKE--GGHRVLIFSQMVRMLDILAEYLSLRGYPFQRLDGSVRGELRQQAIDHFNAPDSDDFVFLLSTR------ 760 (1373)
T ss_pred HHHHHHHhc--CCceEEEhHHHHHHHHHHHHHHHHcCCcceeccCCcchHHHHHHHHhccCCCCCceEEEEecc------
Confidence 344444543 67889999999999999999999999999999999999999999999986 3445688888
Q ss_pred HHHHHHHhc--CCcEEEeeCCC---ChH---HHHHHHHHhhCCCceEEEE
Q psy437 99 SVAAALAQE--RINAISYHAGL---ADK---LRNEVQMKWISNKVHLYNV 140 (184)
Q Consensus 99 ~~a~gL~~~--gi~~~vih~~~---p~~---~r~~~~~~f~~~~~~v~va 140 (184)
|.||.+. --+ .||=+|- ||. .-...||.+..+.|.|+=.
T Consensus 761 --AGGLGINLatAD-TVIIFDSDWNPQNDLQAqARaHRIGQkk~VnVYRL 807 (1373)
T KOG0384|consen 761 --AGGLGINLATAD-TVIIFDSDWNPQNDLQAQARAHRIGQKKHVNVYRL 807 (1373)
T ss_pred --cCcccccccccc-eEEEeCCCCCcchHHHHHHHHHhhcccceEEEEEE
Confidence 8888654 344 4444443 332 2345666677776666544
No 240
>KOG0390|consensus
Probab=93.05 E-value=1.6 Score=40.17 Aligned_cols=115 Identities=8% Similarity=-0.040 Sum_probs=70.6
Q ss_pred hHHHHHHHHHhhc-CCCcEEEEecc-HHHHHHHHHHHHhCCCeeEEecCCCCHHHHHHHHHHHhccCc--eEEEEEeecc
Q psy437 20 VLKEVISLIKAKY-SGQSGIVYCLT-RKECDSVAAALAQERINAISYHAGLADKLRNEVQMKWISNKV--HVGHWTVVSK 95 (184)
Q Consensus 20 k~~~L~~~l~~~~-~~~~~IIf~~t-r~~~e~la~~L~~~gi~~~~~hg~l~~~~R~~~~~~f~~g~~--~vlVaT~tr~ 95 (184)
|+..|..++.... ...--.+++.. +...+.+.+..+..|..+..+||.|+..+|..+++.|-+-.. .|..++..-+
T Consensus 579 kl~~L~~ll~~~~ek~~~~~v~Isny~~tldl~e~~~~~~g~~~~rLdG~~~~~qRq~~vd~FN~p~~~~~vfLlSsKAg 658 (776)
T KOG0390|consen 579 KLLVLVFLLEVIREKLLVKSVLISNYTQTLDLFEQLCRWRGYEVLRLDGKTSIKQRQKLVDTFNDPESPSFVFLLSSKAG 658 (776)
T ss_pred HHHHHHHHHHHHhhhcceEEEEeccHHHHHHHHHHHHhhcCceEEEEcCCCchHHHHHHHHhccCCCCCceEEEEecccc
Confidence 5555555542210 11112344444 444444455555679999999999999999999999986433 4555544211
Q ss_pred cHHHHHHHHHhcCCcEEEeeCCC---ChHHHHHHHHHhhCCCceEEEE
Q psy437 96 ECDSVAAALAQERINAISYHAGL---ADKLRNEVQMKWISNKVHLYNV 140 (184)
Q Consensus 96 ~~e~~a~gL~~~gi~~~vih~~~---p~~~r~~~~~~f~~~~~~v~va 140 (184)
+.||.-=|-+ .+|=+|. |...++.+-|+||.|+-+.+-+
T Consensus 659 -----g~GinLiGAs-Rlil~D~dWNPa~d~QAmaR~~RdGQKk~v~i 700 (776)
T KOG0390|consen 659 -----GEGLNLIGAS-RLILFDPDWNPAVDQQAMARAWRDGQKKPVYI 700 (776)
T ss_pred -----cCceeecccc-eEEEeCCCCCchhHHHHHHHhccCCCcceEEE
Confidence 2466555655 4554554 6677778888899887654443
No 241
>PRK12899 secA preprotein translocase subunit SecA; Reviewed
Probab=93.00 E-value=0.55 Score=43.96 Aligned_cols=67 Identities=12% Similarity=0.043 Sum_probs=49.8
Q ss_pred HHHHHHHHhhcCCCcEEEEeccHHHHHHHHHHHHh----CCCeeEEecCCCCHHHHHHHHHHHhccCceEEEEEeec
Q psy437 22 KEVISLIKAKYSGQSGIVYCLTRKECDSVAAALAQ----ERINAISYHAGLADKLRNEVQMKWISNKVHVGHWTVVS 94 (184)
Q Consensus 22 ~~L~~~l~~~~~~~~~IIf~~tr~~~e~la~~L~~----~gi~~~~~hg~l~~~~R~~~~~~f~~g~~~vlVaT~tr 94 (184)
..++-.+.....+.+++|.++|+..|.+.++++.. .|+++..+.||++.+++...+ ..+|+|+|+++
T Consensus 123 Af~LP~l~~aL~g~~v~IVTpTrELA~Qdae~m~~L~k~lGLsV~~i~GG~~~~eq~~~y------~~DIVygTPgR 193 (970)
T PRK12899 123 TAVMPLYLNALTGKPVHLVTVNDYLAQRDCEWVGSVLRWLGLTTGVLVSGSPLEKRKEIY------QCDVVYGTASE 193 (970)
T ss_pred HHHHHHHHHHhhcCCeEEEeCCHHHHHHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHc------CCCEEEECCCh
Confidence 33444443322344688889999999999998875 478999999999988776443 37899999976
No 242
>KOG0924|consensus
Probab=92.93 E-value=0.16 Score=45.78 Aligned_cols=102 Identities=13% Similarity=0.158 Sum_probs=69.4
Q ss_pred eEEEEEEccChHHHHHHHHHhhc---CCCcEEEEeccHHH----HHHHHHHHHhC------CCeeEEecCCCCHHHHHHH
Q psy437 10 LKYEILPKKNVLKEVISLIKAKY---SGQSGIVYCLTRKE----CDSVAAALAQE------RINAISYHAGLADKLRNEV 76 (184)
Q Consensus 10 l~y~v~~~~~k~~~L~~~l~~~~---~~~~~IIf~~tr~~----~e~la~~L~~~------gi~~~~~hg~l~~~~R~~~ 76 (184)
+.|.-.+.++-.+..+......+ .++-.+||..-.++ |+.+.+.|.+. ++.+..+++.|++....++
T Consensus 536 ~~~~k~p~eDYVeaavkq~v~Ihl~~~~GdilIfmtGqediE~t~~~i~~~l~ql~~~~~~~L~vlpiYSQLp~dlQ~ki 615 (1042)
T KOG0924|consen 536 IMYTKTPVEDYVEAAVKQAVQIHLSGPPGDILIFMTGQEDIECTCDIIKEKLEQLDSAPTTDLAVLPIYSQLPADLQAKI 615 (1042)
T ss_pred EEeccCchHHHHHHHHhhheEeeccCCCCCEEEecCCCcchhHHHHHHHHHHHhhhcCCCCceEEEeehhhCchhhhhhh
Confidence 44554555444443333221111 33557889866554 44555555432 6788899999999998888
Q ss_pred HHHHhccCceEEEEEeecccHHHHHHHHHhcCCcEEEeeCCC
Q psy437 77 QMKWISNKVHVGHWTVVSKECDSVAAALAQERINAISYHAGL 118 (184)
Q Consensus 77 ~~~f~~g~~~vlVaT~tr~~~e~~a~gL~~~gi~~~vih~~~ 118 (184)
.+.--.|.-++||||+ .+-..|.++||. +||--|.
T Consensus 616 Fq~a~~~vRK~IvATN------IAETSLTi~gI~-yVID~Gy 650 (1042)
T KOG0924|consen 616 FQKAEGGVRKCIVATN------IAETSLTIPGIR-YVIDTGY 650 (1042)
T ss_pred cccCCCCceeEEEecc------chhhceeecceE-EEEecCc
Confidence 8888888889999999 666789999999 8876653
No 243
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=92.76 E-value=0.69 Score=42.23 Aligned_cols=75 Identities=15% Similarity=0.143 Sum_probs=54.8
Q ss_pred CCcEEEEeccHHHHHHHHHHHHhC-CCeeEEecCCCCHHHHHHHHHHHhc----cCceEEEEEeecccHHHHHHHHHhcC
Q psy437 34 GQSGIVYCLTRKECDSVAAALAQE-RINAISYHAGLADKLRNEVQMKWIS----NKVHVGHWTVVSKECDSVAAALAQER 108 (184)
Q Consensus 34 ~~~~IIf~~tr~~~e~la~~L~~~-gi~~~~~hg~l~~~~R~~~~~~f~~----g~~~vlVaT~tr~~~e~~a~gL~~~g 108 (184)
++.++||++|.+..+.++..|... +.+ ...+|. ..|..+++.|++ ++..||++|.+ .++|+|.+|
T Consensus 534 ~gg~LVlFtSy~~l~~v~~~l~~~~~~~-ll~Q~~---~~~~~ll~~f~~~~~~~~~~VL~g~~s------f~EGVD~pG 603 (697)
T PRK11747 534 HKGSLVLFASRRQMQKVADLLPRDLRLM-LLVQGD---QPRQRLLEKHKKRVDEGEGSVLFGLQS------FAEGLDLPG 603 (697)
T ss_pred CCCEEEEeCcHHHHHHHHHHHHHhcCCc-EEEeCC---chHHHHHHHHHHHhccCCCeEEEEecc------ccccccCCC
Confidence 345899999999999999998743 333 334553 357788888874 56789999984 488999987
Q ss_pred --CcEEEeeCCCC
Q psy437 109 --INAISYHAGLA 119 (184)
Q Consensus 109 --i~~~vih~~~p 119 (184)
.+ .|+=.++|
T Consensus 604 d~l~-~vII~kLP 615 (697)
T PRK11747 604 DYLT-QVIITKIP 615 (697)
T ss_pred CceE-EEEEEcCC
Confidence 45 56666655
No 244
>PF06862 DUF1253: Protein of unknown function (DUF1253); InterPro: IPR010678 This family is defined by a C-terminal region of approximately 500 residues, Digestive organ expansion factor (DEF) is thought to Regulate the p53 pathway to control the expansion growth of digestive organs and is required for the expansion growth of intestine, liver and exocrine pancreas, but not endocrine pancreas [, ].; GO: 0005634 nucleus
Probab=92.30 E-value=1.8 Score=37.40 Aligned_cols=91 Identities=9% Similarity=0.024 Sum_probs=75.7
Q ss_pred HHHHHh--ccCceEEEEEeecccHHHHHHHHHhcCCcEEEeeCCCChHHHHHHHHHhhCCCceEEEE---------EecC
Q psy437 76 VQMKWI--SNKVHVGHWTVVSKECDSVAAALAQERINAISYHAGLADKLRNEVQMKWISNKVHLYNV---------WKIQ 144 (184)
Q Consensus 76 ~~~~f~--~g~~~vlVaT~tr~~~e~~a~gL~~~gi~~~vih~~~p~~~r~~~~~~f~~~~~~v~va---------~D~~ 144 (184)
++-.+. .....+||+.++-=+--++-..|...+++.+.+|=-.+++.-..+-..|..|+..+++. +.+.
T Consensus 290 iLP~l~~~~~~~~~LIfIPSYfDfVRlRN~lk~~~~sF~~i~EYts~~~isRAR~~F~~G~~~iLL~TER~HFfrRy~ir 369 (442)
T PF06862_consen 290 ILPQLKRDSKMSGTLIFIPSYFDFVRLRNYLKKENISFVQISEYTSNSDISRARSQFFHGRKPILLYTERFHFFRRYRIR 369 (442)
T ss_pred HHHHhhhccCCCcEEEEecchhhhHHHHHHHHhcCCeEEEecccCCHHHHHHHHHHHHcCCceEEEEEhHHhhhhhceec
Confidence 444444 24567999999988877888889999999888999999999999999999999999998 3999
Q ss_pred CccEEEecCCCCCcccccccccc
Q psy437 145 WKRIIWIHSLVLIKPDYLPPILD 167 (184)
Q Consensus 145 ~vr~v~~~~~p~~~e~y~~~i~~ 167 (184)
.+++|+=|.+|..++-| .+++.
T Consensus 370 Gi~~viFY~~P~~p~fY-~El~n 391 (442)
T PF06862_consen 370 GIRHVIFYGPPENPQFY-SELLN 391 (442)
T ss_pred CCcEEEEECCCCChhHH-HHHHh
Confidence 99999999999887654 55543
No 245
>cd01524 RHOD_Pyr_redox Member of the Rhodanese Homology Domain superfamily. Included in this CD are the Lactococcus lactis NADH oxidase, Bacillus cereus NADH dehydrogenase, and Bacteroides thetaiotaomicron pyridine nucleotide-disulphide oxidoreductase, and similar rhodanese-like domains found C-terminal of the pyridine nucleotide-disulphide oxidoreductase (Pyr-redox) domain and the Pyr-redox dimerization domain.
Probab=92.00 E-value=0.58 Score=30.61 Aligned_cols=37 Identities=22% Similarity=0.269 Sum_probs=31.2
Q ss_pred CCCcEEEEeccHHHHHHHHHHHHhCCCeeEEecCCCC
Q psy437 33 SGQSGIVYCLTRKECDSVAAALAQERINAISYHAGLA 69 (184)
Q Consensus 33 ~~~~~IIf~~tr~~~e~la~~L~~~gi~~~~~hg~l~ 69 (184)
+..+.++||.+-..+...+..|+..|+++..+.||++
T Consensus 50 ~~~~vvl~c~~g~~a~~~a~~L~~~G~~v~~l~GG~~ 86 (90)
T cd01524 50 KDKEIIVYCAVGLRGYIAARILTQNGFKVKNLDGGYK 86 (90)
T ss_pred CCCcEEEEcCCChhHHHHHHHHHHCCCCEEEecCCHH
Confidence 4567888999877788889999999998888999975
No 246
>KOG0950|consensus
Probab=92.00 E-value=0.42 Score=44.43 Aligned_cols=90 Identities=21% Similarity=0.344 Sum_probs=67.3
Q ss_pred ceEEEEEeecccHHHHHHHHHhc-----------C-----------------Cc----------EEEeeCCCChHHHHHH
Q psy437 85 VHVGHWTVVSKECDSVAAALAQE-----------R-----------------IN----------AISYHAGLADKLRNEV 126 (184)
Q Consensus 85 ~~vlVaT~tr~~~e~~a~gL~~~-----------g-----------------i~----------~~vih~~~p~~~r~~~ 126 (184)
.++||++++|+.||.+|..+.+. + ++ +...|+|+..+.|+++
T Consensus 461 ~~~lvfc~sk~~ce~~a~~~~~~vpk~~~~e~~~~~~~~~s~s~~lr~~~~~ld~Vl~~ti~~GvAyHhaGLT~eER~~i 540 (1008)
T KOG0950|consen 461 SSVLVFCPSKKNCENVASLIAKKVPKHIKSEKRLGLWELLSISNLLRRIPGILDPVLAKTIPYGVAYHHAGLTSEEREII 540 (1008)
T ss_pred CeEEEEcCcccchHHHHHHHHHHhhHhhhhhhhhhHHHHHHHHhHhhcCCcccchHHheeccccceecccccccchHHHH
Confidence 35899999999999988655210 1 11 2567899999999999
Q ss_pred HHHhhCCCceEEEE-------EecCCccEEEecCC----CCCccccccccccccCCccccc
Q psy437 127 QMKWISNKVHLYNV-------WKIQWKRIIWIHSL----VLIKPDYLPPILDLRLGREDIR 176 (184)
Q Consensus 127 ~~~f~~~~~~v~va-------~D~~~vr~v~~~~~----p~~~e~y~~~i~~~~~~r~~~~ 176 (184)
-..|+.|.+.|++| .+-|-.|.++-..+ +.+.-.|.|-+ +|+||.++.
T Consensus 541 E~afr~g~i~vl~aTSTlaaGVNLPArRVIiraP~~g~~~l~~~~YkQM~--GRAGR~gid 599 (1008)
T KOG0950|consen 541 EAAFREGNIFVLVATSTLAAGVNLPARRVIIRAPYVGREFLTRLEYKQMV--GRAGRTGID 599 (1008)
T ss_pred HHHHHhcCeEEEEecchhhccCcCCcceeEEeCCccccchhhhhhHHhhh--hhhhhcccc
Confidence 99999999999999 27777677665533 34556788888 588887543
No 247
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=91.98 E-value=0.39 Score=43.85 Aligned_cols=109 Identities=6% Similarity=-0.025 Sum_probs=70.3
Q ss_pred EEEEeccHHHHHHHHHHHHhC--CCeeEEecCCCCHH--HHHHHHHHHhccCceEEEEEeecccHHHHHHHHHhcCCc-E
Q psy437 37 GIVYCLTRKECDSVAAALAQE--RINAISYHAGLADK--LRNEVQMKWISNKVHVGHWTVVSKECDSVAAALAQERIN-A 111 (184)
Q Consensus 37 ~IIf~~tr~~~e~la~~L~~~--gi~~~~~hg~l~~~--~R~~~~~~f~~g~~~vlVaT~tr~~~e~~a~gL~~~gi~-~ 111 (184)
.|+++- .-+|.+++.|... +.++..+.++.... .-...+..|.+|+.+|||.|. .+|.|++.+++. +
T Consensus 485 ~L~~~G--~GterieeeL~~~FP~~rv~r~d~Dtt~~k~~~~~~l~~~~~ge~dILiGTQ------miaKG~~fp~vtLV 556 (730)
T COG1198 485 HLRAVG--PGTERIEEELKRLFPGARIIRIDSDTTRRKGALEDLLDQFANGEADILIGTQ------MIAKGHDFPNVTLV 556 (730)
T ss_pred eeEEec--ccHHHHHHHHHHHCCCCcEEEEccccccchhhHHHHHHHHhCCCCCeeecch------hhhcCCCcccceEE
Confidence 355443 3467777777763 67777777776543 345779999999999999999 999999999988 3
Q ss_pred EEeeCC-------CChHHHHH---HHHHhhCCC----ceEEEE-E--ecCCccEEEecC
Q psy437 112 ISYHAG-------LADKLRNE---VQMKWISNK----VHLYNV-W--KIQWKRIIWIHS 153 (184)
Q Consensus 112 ~vih~~-------~p~~~r~~---~~~~f~~~~----~~v~va-~--D~~~vr~v~~~~ 153 (184)
.|+++| +=.++|.+ .|=..+.|. ..|++- + |.|.++.+.+.|
T Consensus 557 gvl~aD~~L~~~DfRA~Er~fqll~QvaGRAgR~~~~G~VvIQT~~P~hp~i~~~~~~d 615 (730)
T COG1198 557 GVLDADTGLGSPDFRASERTFQLLMQVAGRAGRAGKPGEVVIQTYNPDHPAIQALKRGD 615 (730)
T ss_pred EEEechhhhcCCCcchHHHHHHHHHHHHhhhccCCCCCeEEEEeCCCCcHHHHHHHhcC
Confidence 445554 33344432 222333332 344443 2 666666666554
No 248
>KOG4150|consensus
Probab=91.84 E-value=0.41 Score=42.52 Aligned_cols=97 Identities=12% Similarity=0.127 Sum_probs=76.1
Q ss_pred HHHHHhccCceEEEEEeecccHHHHHHHHH------hcCC-c-EEEeeCCCChHHHHHHHHHhhCCCceEEEE-------
Q psy437 76 VQMKWISNKVHVGHWTVVSKECDSVAAALA------QERI-N-AISYHAGLADKLRNEVQMKWISNKVHLYNV------- 140 (184)
Q Consensus 76 ~~~~f~~g~~~vlVaT~tr~~~e~~a~gL~------~~gi-~-~~vih~~~p~~~r~~~~~~f~~~~~~v~va------- 140 (184)
++-+.....++.|-+|.+|+-||.+-.... .+++ . +..|.||-..+.|..+-+..-.|++--++|
T Consensus 517 ~~~~~i~~~~R~IAFC~~R~~CEL~~~~~R~I~~ET~~~LV~~i~SYRGGY~A~DRRKIE~~~F~G~L~giIaTNALELG 596 (1034)
T KOG4150|consen 517 LFAEMVQHGLRCIAFCPSRKLCELVLCLTREILAETAPHLVEAITSYRGGYIAEDRRKIESDLFGGKLCGIIATNALELG 596 (1034)
T ss_pred HHHHHHHcCCcEEEeccHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhcCccchhhHHHHHHHhhCCeeeEEEecchhhhc
Confidence 455566678899999999999887643321 1111 1 255899999999999999877777766666
Q ss_pred EecCCccEEEecCCCCCccccccccccccCCccc
Q psy437 141 WKIQWKRIIWIHSLVLIKPDYLPPILDLRLGRED 174 (184)
Q Consensus 141 ~D~~~vr~v~~~~~p~~~e~y~~~i~~~~~~r~~ 174 (184)
+|+-.+..|++...|-+.-+..|.. +|+||++
T Consensus 597 IDIG~LDAVl~~GFP~S~aNl~QQ~--GRAGRRN 628 (1034)
T KOG4150|consen 597 IDIGHLDAVLHLGFPGSIANLWQQA--GRAGRRN 628 (1034)
T ss_pred cccccceeEEEccCchhHHHHHHHh--ccccccC
Confidence 5999999999999999999999987 6999974
No 249
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=91.78 E-value=0.63 Score=42.51 Aligned_cols=82 Identities=7% Similarity=0.002 Sum_probs=56.5
Q ss_pred CCCcEEEEeccHHHHHHHHHHHHhCCC-------eeEEecCCCCHHHHHHHHHHHhc----cCceEEEEEeecccHHHHH
Q psy437 33 SGQSGIVYCLTRKECDSVAAALAQERI-------NAISYHAGLADKLRNEVQMKWIS----NKVHVGHWTVVSKECDSVA 101 (184)
Q Consensus 33 ~~~~~IIf~~tr~~~e~la~~L~~~gi-------~~~~~hg~l~~~~R~~~~~~f~~----g~~~vlVaT~tr~~~e~~a 101 (184)
.++.++||++|.+..+.+.+.+.+.|+ +..+.-+ -+..++..++++|.. ++..||.|+-.- .++
T Consensus 521 ~pgg~lvfFpSy~~l~~v~~~~~~~~~~~~i~~~k~i~~E~-~~~~~~~~~l~~f~~~~~~~~gavL~av~gG----k~s 595 (705)
T TIGR00604 521 IPDGIVVFFPSYSYLENIVSTWKEMGILENIEKKKLIFVET-KDAQETSDALERYKQAVSEGRGAVLLSVAGG----KVS 595 (705)
T ss_pred CCCcEEEEccCHHHHHHHHHHHHhcCHHHHHhcCCCEEEeC-CCcchHHHHHHHHHHHHhcCCceEEEEecCC----ccc
Confidence 456789999999999999988876543 1122211 222578899999975 355688888211 568
Q ss_pred HHHHhcC--CcEEEeeCCCCh
Q psy437 102 AALAQER--INAISYHAGLAD 120 (184)
Q Consensus 102 ~gL~~~g--i~~~vih~~~p~ 120 (184)
+|+|.+| .+ .|+=.|+|-
T Consensus 596 EGIDf~~~~~r-~ViivGlPf 615 (705)
T TIGR00604 596 EGIDFCDDLGR-AVIMVGIPY 615 (705)
T ss_pred CccccCCCCCc-EEEEEccCC
Confidence 8999887 55 555588886
No 250
>PRK12903 secA preprotein translocase subunit SecA; Reviewed
Probab=91.69 E-value=0.75 Score=42.76 Aligned_cols=89 Identities=10% Similarity=0.034 Sum_probs=67.5
Q ss_pred cCceEEEEEeecccHHHHHHHHHhcCCcEEEeeCCCChHHHHHHHHHhhCCCceEEEE-----EecCCcc--------EE
Q psy437 83 NKVHVGHWTVVSKECDSVAAALAQERINAISYHAGLADKLRNEVQMKWISNKVHLYNV-----WKIQWKR--------II 149 (184)
Q Consensus 83 g~~~vlVaT~tr~~~e~~a~gL~~~gi~~~vih~~~p~~~r~~~~~~f~~~~~~v~va-----~D~~~vr--------~v 149 (184)
..-+|||.|.+-...|.++..|...||+..|+|+---...-.-+-+..+.|.+.|-.- -||.--. +|
T Consensus 425 ~gqPVLVgT~SIe~SE~ls~~L~~~gi~h~vLNAk~~e~EA~IIa~AG~~GaVTIATNMAGRGTDI~Lg~~V~~~GGLhV 504 (925)
T PRK12903 425 KGQPILIGTAQVEDSETLHELLLEANIPHTVLNAKQNAREAEIIAKAGQKGAITIATNMAGRGTDIKLSKEVLELGGLYV 504 (925)
T ss_pred cCCCEEEEeCcHHHHHHHHHHHHHCCCCceeecccchhhHHHHHHhCCCCCeEEEecccccCCcCccCchhHHHcCCcEE
Confidence 3458999999999999999999999999999999755555556655666665554433 3776433 89
Q ss_pred EecCCCCCccccccccccccCCcc
Q psy437 150 WIHSLVLIKPDYLPPILDLRLGRE 173 (184)
Q Consensus 150 ~~~~~p~~~e~y~~~i~~~~~~r~ 173 (184)
|....|.+. -+.+.|++|+||-
T Consensus 505 IgTerheSr--RIDnQLrGRaGRQ 526 (925)
T PRK12903 505 LGTDKAESR--RIDNQLRGRSGRQ 526 (925)
T ss_pred EecccCchH--HHHHHHhcccccC
Confidence 988887764 4566788999996
No 251
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=91.60 E-value=1.5 Score=40.82 Aligned_cols=77 Identities=12% Similarity=-0.019 Sum_probs=56.8
Q ss_pred CCCcEEEEeccHHHHHHHHHHHHhCCCeeEEecCCCCHHHHHHHHHHHhccCceEEEEEeecccHHHHHHHHHhcC--Cc
Q psy437 33 SGQSGIVYCLTRKECDSVAAALAQERINAISYHAGLADKLRNEVQMKWISNKVHVGHWTVVSKECDSVAAALAQER--IN 110 (184)
Q Consensus 33 ~~~~~IIf~~tr~~~e~la~~L~~~gi~~~~~hg~l~~~~R~~~~~~f~~g~~~vlVaT~tr~~~e~~a~gL~~~g--i~ 110 (184)
.+++++|+++|.+..+.+++.|....++. ...|.-. .|.+++++|++++..||++|. ..++|+|.+| ..
T Consensus 646 ~~g~~LVLFtS~~~l~~v~~~l~~~~~~~-l~Qg~~~--~~~~l~~~F~~~~~~vLlG~~------sFwEGVD~p~~~~~ 716 (820)
T PRK07246 646 LQQPILVLFNSKKHLLAVSDLLDQWQVSH-LAQEKNG--TAYNIKKRFDRGEQQILLGLG------SFWEGVDFVQADRM 716 (820)
T ss_pred cCCCEEEEECcHHHHHHHHHHHhhcCCcE-EEeCCCc--cHHHHHHHHHcCCCeEEEecc------hhhCCCCCCCCCeE
Confidence 56789999999999999999997655444 3444211 356789999998889999998 4588999864 33
Q ss_pred EEEeeCCCC
Q psy437 111 AISYHAGLA 119 (184)
Q Consensus 111 ~~vih~~~p 119 (184)
.++=.++|
T Consensus 717 -~viI~kLP 724 (820)
T PRK07246 717 -IEVITRLP 724 (820)
T ss_pred -EEEEecCC
Confidence 33446666
No 252
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=91.37 E-value=2.9 Score=28.39 Aligned_cols=70 Identities=21% Similarity=0.112 Sum_probs=47.4
Q ss_pred ChHHHHHHHHHhhc---CCCcEEEEeccHHHHHHHHHHHHhCC---CeeEEecCCCCHHHHHHHHHHHhccCceEEEEEe
Q psy437 19 NVLKEVISLIKAKY---SGQSGIVYCLTRKECDSVAAALAQER---INAISYHAGLADKLRNEVQMKWISNKVHVGHWTV 92 (184)
Q Consensus 19 ~k~~~L~~~l~~~~---~~~~~IIf~~tr~~~e~la~~L~~~g---i~~~~~hg~l~~~~R~~~~~~f~~g~~~vlVaT~ 92 (184)
.|...+...+.... ...+.++.|++...+++..+.+.... ..+..++++....... ........++++|.
T Consensus 12 GKT~~~~~~~~~~~~~~~~~~~lv~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~i~i~t~ 87 (144)
T cd00046 12 GKTLAALLPILELLDSLKGGQVLVLAPTRELANQVAERLKELFGEGIKVGYLIGGTSIKQQE----KLLSGKTDIVVGTP 87 (144)
T ss_pred chhHHHHHHHHHHHhcccCCCEEEEcCcHHHHHHHHHHHHHHhhCCcEEEEEecCcchhHHH----HHhcCCCCEEEECc
Confidence 45544444443321 45788999999999999888877543 7788888876554443 33345678899888
No 253
>KOG0920|consensus
Probab=90.55 E-value=0.49 Score=44.17 Aligned_cols=92 Identities=11% Similarity=0.127 Sum_probs=71.0
Q ss_pred HHHHHHHHhhcCCCcEEEEeccHHHHHHHHHHHHhC-------CCeeEEecCCCCHHHHHHHHHHHhccCceEEEEEeec
Q psy437 22 KEVISLIKAKYSGQSGIVYCLTRKECDSVAAALAQE-------RINAISYHAGLADKLRNEVQMKWISNKVHVGHWTVVS 94 (184)
Q Consensus 22 ~~L~~~l~~~~~~~~~IIf~~tr~~~e~la~~L~~~-------gi~~~~~hg~l~~~~R~~~~~~f~~g~~~vlVaT~tr 94 (184)
..|+..|-+....+..|||-+.-.....+.+.|... .+-+..+|+.|+..+...+...--.|..+||++|+
T Consensus 401 ~~li~~I~~~~~~GaILVFLPG~~eI~~~~~~L~~~~~f~~~~~~~ilplHs~~~s~eQ~~VF~~pp~g~RKIIlaTN-- 478 (924)
T KOG0920|consen 401 EDLIEYIDEREFEGAILVFLPGWEEILQLKELLEVNLPFADSLKFAILPLHSSIPSEEQQAVFKRPPKGTRKIILATN-- 478 (924)
T ss_pred HHHHHhcccCCCCceEEEEcCCHHHHHHHHHHhhhccccccccceEEEeccccCChHHHHHhcCCCCCCcchhhhhhh--
Confidence 334444433223567899999999999999999742 24567799999999999998888899999999999
Q ss_pred ccHHHHHHHHHhcCCcEEEeeCCCCh
Q psy437 95 KECDSVAAALAQERINAISYHAGLAD 120 (184)
Q Consensus 95 ~~~e~~a~gL~~~gi~~~vih~~~p~ 120 (184)
.+...+.++++- +||-.|.-+
T Consensus 479 ----IAETSITIdDVv-yVIDsG~~K 499 (924)
T KOG0920|consen 479 ----IAETSITIDDVV-YVIDSGLVK 499 (924)
T ss_pred ----hHhhcccccCeE-EEEecCeee
Confidence 777788888885 777666543
No 254
>KOG0953|consensus
Probab=90.05 E-value=1.4 Score=39.05 Aligned_cols=91 Identities=16% Similarity=0.053 Sum_probs=61.5
Q ss_pred EEEEeecccHHHHHHHHHhcCCc-EEEeeCCCChHHHHHHHHHhhC--CCceEEEEEe------cCCccEEEecCCCCCc
Q psy437 88 GHWTVVSKECDSVAAALAQERIN-AISYHAGLADKLRNEVQMKWIS--NKVHLYNVWK------IQWKRIIWIHSLVLIK 158 (184)
Q Consensus 88 lVaT~tr~~~e~~a~gL~~~gi~-~~vih~~~p~~~r~~~~~~f~~--~~~~v~va~D------~~~vr~v~~~~~p~~~ 158 (184)
+||- +|++.=.+.+.+++.|.. +.||-|++|+.-|..=-..|-+ +.+.|+||-| .-+||-||=+++-+-.
T Consensus 361 vV~F-Skk~I~~~k~kIE~~g~~k~aVIYGsLPPeTr~aQA~~FNd~~~e~dvlVAsDAIGMGLNL~IrRiiF~sl~Kys 439 (700)
T KOG0953|consen 361 VVAF-SKKDIFTVKKKIEKAGNHKCAVIYGSLPPETRLAQAALFNDPSNECDVLVASDAIGMGLNLNIRRIIFYSLIKYS 439 (700)
T ss_pred EEEe-ehhhHHHHHHHHHHhcCcceEEEecCCCCchhHHHHHHhCCCCCccceEEeecccccccccceeEEEEeecccCC
Confidence 5544 467777777888888876 8999999999888655455765 8999999932 1345666655554222
Q ss_pred c--------ccccccccccCCcc--ccccccc
Q psy437 159 P--------DYLPPILDLRLGRE--DIREGET 180 (184)
Q Consensus 159 e--------~y~~~i~~~~~~r~--~~~~~~~ 180 (184)
. +.+..|. +|+||- ..++|++
T Consensus 440 g~e~~~it~sqikQIA-GRAGRf~s~~~~G~v 470 (700)
T KOG0953|consen 440 GRETEDITVSQIKQIA-GRAGRFGSKYPQGEV 470 (700)
T ss_pred cccceeccHHHHHHHh-hcccccccCCcCceE
Confidence 2 2233442 799995 7788764
No 255
>KOG0949|consensus
Probab=89.42 E-value=2.2 Score=40.37 Aligned_cols=139 Identities=17% Similarity=0.244 Sum_probs=83.5
Q ss_pred CCCcEEEEeccHHHHHHHHHHHHh----CCCe--eEEecCCCC-----HHHHHHHHHHHhcc------------CceEEE
Q psy437 33 SGQSGIVYCLTRKECDSVAAALAQ----ERIN--AISYHAGLA-----DKLRNEVQMKWISN------------KVHVGH 89 (184)
Q Consensus 33 ~~~~~IIf~~tr~~~e~la~~L~~----~gi~--~~~~hg~l~-----~~~R~~~~~~f~~g------------~~~vlV 89 (184)
..-|+|.|.--|..|+.+|..+.. .... -.-+|..+. ..+|.+..+.|.+. .-.+++
T Consensus 849 ~~lpaicfn~dr~fcekla~kv~~~Le~~e~Ee~k~k~m~k~kk~~~~a~~r~Kt~e~~~k~~~~~ek~~~~k~d~~~~~ 928 (1330)
T KOG0949|consen 849 NMLPAICFNTDRDFCEKLALKVHRQLESMEMEEKKDKLMEKMKKEAKRARDREKTKESWIKESIAAEKSFQMKNDKKNIK 928 (1330)
T ss_pred cccchhcccchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccce
Confidence 556899998888888887765532 1100 001121111 24566666666631 123344
Q ss_pred EEeec-----------------ccHHHHHHHHHhcCCcEEEeeCCCChHHHHHHHHHhhCCCceEEEE-------EecCC
Q psy437 90 WTVVS-----------------KECDSVAAALAQERINAISYHAGLADKLRNEVQMKWISNKVHLYNV-------WKIQW 145 (184)
Q Consensus 90 aT~tr-----------------~~~e~~a~gL~~~gi~~~vih~~~p~~~r~~~~~~f~~~~~~v~va-------~D~~~ 145 (184)
+|--. ++++..---|-.+|| .+=|+||....|.-+-=-|+.|.++|+.| ++.|=
T Consensus 929 ~~f~dp~~~~~~~~f~~~~~~~g~~~~~~id~lyRGi--G~HHaglNr~yR~~VEvLFR~g~L~VlfaT~TLsLGiNMPC 1006 (1330)
T KOG0949|consen 929 YTFLDPLTKLTDYEFEEETKFIGNTDFEFIDMLYRGI--GVHHAGLNRKYRSLVEVLFRQGHLQVLFATETLSLGINMPC 1006 (1330)
T ss_pred EEecCcccccchhhhhhhccccCCCcHHHHHHHHhcc--cccccccchHHHHHHHHHhhcCceEEEEEeeehhcccCCCc
Confidence 43211 333333333344565 67799999999999988899999999999 47775
Q ss_pred ccEEEec-CCCCCccccccccccccCCcccc
Q psy437 146 KRIIWIH-SLVLIKPDYLPPILDLRLGREDI 175 (184)
Q Consensus 146 vr~v~~~-~~p~~~e~y~~~i~~~~~~r~~~ 175 (184)
-.-|+-- ++--++-.|-|-. +|+||+++
T Consensus 1007 rTVvF~gDsLQL~plny~Qma--GRAGRRGF 1035 (1330)
T KOG0949|consen 1007 RTVVFAGDSLQLDPLNYKQMA--GRAGRRGF 1035 (1330)
T ss_pred eeEEEeccccccCchhHHhhh--cccccccc
Confidence 4444433 3444555666654 79999844
No 256
>cd01523 RHOD_Lact_B Member of the Rhodanese Homology Domain superfamily. This CD includes predicted proteins with rhodanese-like domains found N-terminal of the metallo-beta-lactamase domain.
Probab=89.01 E-value=0.64 Score=30.98 Aligned_cols=38 Identities=21% Similarity=0.237 Sum_probs=31.7
Q ss_pred CCCcEEEEeccHHHHHHHHHHHHhCCCeeEEecCCCCH
Q psy437 33 SGQSGIVYCLTRKECDSVAAALAQERINAISYHAGLAD 70 (184)
Q Consensus 33 ~~~~~IIf~~tr~~~e~la~~L~~~gi~~~~~hg~l~~ 70 (184)
+..+.++||.+-..+...+..|...|+.+..+.||+..
T Consensus 60 ~~~~ivv~C~~G~rs~~aa~~L~~~G~~~~~l~GG~~~ 97 (100)
T cd01523 60 DDQEVTVICAKEGSSQFVAELLAERGYDVDYLAGGMKA 97 (100)
T ss_pred CCCeEEEEcCCCCcHHHHHHHHHHcCceeEEeCCcHHh
Confidence 44678889998778889999999999998788998753
No 257
>KOG0924|consensus
Probab=88.40 E-value=5.4 Score=36.48 Aligned_cols=119 Identities=4% Similarity=-0.032 Sum_probs=81.5
Q ss_pred EEEEeccHHHHHHHHHHHHh--------CCCeeEEecCCCCHHHHH-HHHHHHh-----ccCceEEEEEeecccHHHHHH
Q psy437 37 GIVYCLTRKECDSVAAALAQ--------ERINAISYHAGLADKLRN-EVQMKWI-----SNKVHVGHWTVVSKECDSVAA 102 (184)
Q Consensus 37 ~IIf~~tr~~~e~la~~L~~--------~gi~~~~~hg~l~~~~R~-~~~~~f~-----~g~~~vlVaT~tr~~~e~~a~ 102 (184)
-||.++-.-+++..+.++.. .-+++..+|...+.++=- .++.+-. .+...|||+-.+..++|-...
T Consensus 502 KliVtSATm~a~kf~nfFgn~p~f~IpGRTyPV~~~~~k~p~eDYVeaavkq~v~Ihl~~~~GdilIfmtGqediE~t~~ 581 (1042)
T KOG0924|consen 502 KLIVTSATMDAQKFSNFFGNCPQFTIPGRTYPVEIMYTKTPVEDYVEAAVKQAVQIHLSGPPGDILIFMTGQEDIECTCD 581 (1042)
T ss_pred eEEEeeccccHHHHHHHhCCCceeeecCCccceEEEeccCchHHHHHHHHhhheEeeccCCCCCEEEecCCCcchhHHHH
Confidence 34444444568888888862 236788888877655422 2222222 344678999998876555444
Q ss_pred HH--------Hhc--CCcEEEeeCCCChHHHHHHHHHhhCCCceEEEE-------EecCCccEEEecCCC
Q psy437 103 AL--------AQE--RINAISYHAGLADKLRNEVQMKWISNKVHLYNV-------WKIQWKRIIWIHSLV 155 (184)
Q Consensus 103 gL--------~~~--gi~~~vih~~~p~~~r~~~~~~f~~~~~~v~va-------~D~~~vr~v~~~~~p 155 (184)
.+ ..+ ++.++-|-..||++....+-+.--.|--.++|| +-+|+|++||.-...
T Consensus 582 ~i~~~l~ql~~~~~~~L~vlpiYSQLp~dlQ~kiFq~a~~~vRK~IvATNIAETSLTi~gI~yVID~Gy~ 651 (1042)
T KOG0924|consen 582 IIKEKLEQLDSAPTTDLAVLPIYSQLPADLQAKIFQKAEGGVRKCIVATNIAETSLTIPGIRYVIDTGYC 651 (1042)
T ss_pred HHHHHHHhhhcCCCCceEEEeehhhCchhhhhhhcccCCCCceeEEEeccchhhceeecceEEEEecCce
Confidence 33 233 677788999999999888877777777789998 589999999876543
No 258
>KOG0392|consensus
Probab=88.18 E-value=4.4 Score=39.27 Aligned_cols=89 Identities=12% Similarity=0.155 Sum_probs=66.2
Q ss_pred hHHHHHHHHHhhc---------------CCCcEEEEeccHHHHHHHHHHHHhCCCe-eE--EecCCCCHHHHHHHHHHHh
Q psy437 20 VLKEVISLIKAKY---------------SGQSGIVYCLTRKECDSVAAALAQERIN-AI--SYHAGLADKLRNEVQMKWI 81 (184)
Q Consensus 20 k~~~L~~~l~~~~---------------~~~~~IIf~~tr~~~e~la~~L~~~gi~-~~--~~hg~l~~~~R~~~~~~f~ 81 (184)
|+..|.++|.+-. ...+++|||.-+...+-+.+.|.+.-.+ +. .+.|..++.+|.++.++|-
T Consensus 1311 Kl~AL~qLL~eCGig~~~~~~~g~~s~vsqHRiLIFcQlK~mlDlVekDL~k~~mpsVtymRLDGSVpp~~R~kiV~~FN 1390 (1549)
T KOG0392|consen 1311 KLSALKQLLSECGIGNNSDSEVGTPSDVSQHRILIFCQLKSMLDLVEKDLFKKYMPSVTYMRLDGSVPPGDRQKIVERFN 1390 (1549)
T ss_pred hHHHHHHHHHHhCCCCCCcccccCcchhccceeEEeeeHHHHHHHHHHHHhhhhcCceeEEEecCCCCcHHHHHHHHHhc
Confidence 7888888876421 1235799999999999999988775443 33 5789999999999999999
Q ss_pred cc-CceEEEEEeecccHHHHHHHHHhcCCcEEE
Q psy437 82 SN-KVHVGHWTVVSKECDSVAAALAQERINAIS 113 (184)
Q Consensus 82 ~g-~~~vlVaT~tr~~~e~~a~gL~~~gi~~~v 113 (184)
++ .++||.-|.--| .=||+--|-+++|
T Consensus 1391 ~DptIDvLlLTThVG-----GLGLNLTGADTVV 1418 (1549)
T KOG0392|consen 1391 EDPTIDVLLLTTHVG-----GLGLNLTGADTVV 1418 (1549)
T ss_pred CCCceeEEEEeeecc-----ccccccCCCceEE
Confidence 98 778887776221 2356667777433
No 259
>KOG1123|consensus
Probab=87.64 E-value=5.2 Score=35.31 Aligned_cols=46 Identities=15% Similarity=0.099 Sum_probs=36.4
Q ss_pred CCCcEEEEeccHHHHHHHHHHHHhCCCeeEEecCCCCHHHHHHHHHHHhcc
Q psy437 33 SGQSGIVYCLTRKECDSVAAALAQERINAISYHAGLADKLRNEVQMKWISN 83 (184)
Q Consensus 33 ~~~~~IIf~~tr~~~e~la~~L~~~gi~~~~~hg~l~~~~R~~~~~~f~~g 83 (184)
.+.+.|||.-..-.....|-.|.+ -+++|..++.+|.++++.|..+
T Consensus 542 RgDKiIVFsDnvfALk~YAikl~K-----pfIYG~Tsq~ERm~ILqnFq~n 587 (776)
T KOG1123|consen 542 RGDKIIVFSDNVFALKEYAIKLGK-----PFIYGPTSQNERMKILQNFQTN 587 (776)
T ss_pred cCCeEEEEeccHHHHHHHHHHcCC-----ceEECCCchhHHHHHHHhcccC
Confidence 677899998776666666665543 4688999999999999999864
No 260
>KOG0387|consensus
Probab=87.58 E-value=8.9 Score=35.53 Aligned_cols=107 Identities=13% Similarity=0.126 Sum_probs=76.0
Q ss_pred ChHHHHHHHHHhh-cCCCcEEEEeccHHHHHHHHHHHH-hCCCeeEEecCCCCHHHHHHHHHHHhccCc-eE-EEEEeec
Q psy437 19 NVLKEVISLIKAK-YSGQSGIVYCLTRKECDSVAAALA-QERINAISYHAGLADKLRNEVQMKWISNKV-HV-GHWTVVS 94 (184)
Q Consensus 19 ~k~~~L~~~l~~~-~~~~~~IIf~~tr~~~e~la~~L~-~~gi~~~~~hg~l~~~~R~~~~~~f~~g~~-~v-lVaT~tr 94 (184)
.|+..+..+|..- ..+.++++|..|+...+.+...|. ..|+...-+.|..+...|..+.++|-.++. .| |..|.
T Consensus 530 GKm~vl~~ll~~W~kqg~rvllFsqs~~mLdilE~fL~~~~~ysylRmDGtT~~~~R~~lVd~Fne~~s~~VFLLTTr-- 607 (923)
T KOG0387|consen 530 GKMKVLAKLLKDWKKQGDRVLLFSQSRQMLDILESFLRRAKGYSYLRMDGTTPAALRQKLVDRFNEDESIFVFLLTTR-- 607 (923)
T ss_pred chHHHHHHHHHHHhhCCCEEEEehhHHHHHHHHHHHHHhcCCceEEEecCCCccchhhHHHHhhcCCCceEEEEEEec--
Confidence 3777777666432 146689999999999999999998 689999999999999999999999998765 33 34444
Q ss_pred ccHHHHHHHH--HhcCCcEEEeeCCC---ChHHHHHHHHHhhCCC
Q psy437 95 KECDSVAAAL--AQERINAISYHAGL---ADKLRNEVQMKWISNK 134 (184)
Q Consensus 95 ~~~e~~a~gL--~~~gi~~~vih~~~---p~~~r~~~~~~f~~~~ 134 (184)
+.|| +--|.+ -||=+|. |+..-...-|+|+=|.
T Consensus 608 ------vGGLGlNLTgAn-RVIIfDPdWNPStD~QAreRawRiGQ 645 (923)
T KOG0387|consen 608 ------VGGLGLNLTGAN-RVIIFDPDWNPSTDNQARERAWRIGQ 645 (923)
T ss_pred ------ccccccccccCc-eEEEECCCCCCccchHHHHHHHhhcC
Confidence 4444 445655 5555554 3444444445576543
No 261
>KOG0388|consensus
Probab=87.34 E-value=4.4 Score=37.21 Aligned_cols=111 Identities=18% Similarity=0.242 Sum_probs=76.6
Q ss_pred hHHHHHHHHHhhcCCCcEEEEeccHHHHHHHHHHHHhCCCeeEEecCCCCHHHHHHHHHHHhccCce-EEEEEeecccHH
Q psy437 20 VLKEVISLIKAKYSGQSGIVYCLTRKECDSVAAALAQERINAISYHAGLADKLRNEVQMKWISNKVH-VGHWTVVSKECD 98 (184)
Q Consensus 20 k~~~L~~~l~~~~~~~~~IIf~~tr~~~e~la~~L~~~gi~~~~~hg~l~~~~R~~~~~~f~~g~~~-vlVaT~tr~~~e 98 (184)
+++.|+..|+. .+...++|..-.+..+-+..+|...++.-.-+.|.....+|..+...|...++= .|..|.
T Consensus 1032 ~LDeLL~kLka--egHRvL~yfQMTkM~dl~EdYl~yr~Y~ylRLDGSsk~~dRrd~vrDwQ~sdiFvFLLSTR------ 1103 (1185)
T KOG0388|consen 1032 VLDELLPKLKA--EGHRVLMYFQMTKMIDLIEDYLVYRGYTYLRLDGSSKASDRRDVVRDWQASDIFVFLLSTR------ 1103 (1185)
T ss_pred eHHHHHHHhhc--CCceEEehhHHHHHHHHHHHHHHhhccceEEecCcchhhHHHHHHhhccCCceEEEEEecc------
Confidence 34444444543 567899999999999999999999999999999999999999999999984442 244455
Q ss_pred HHHHHHHhc--CCc-EEEeeCCCCh----HHHHHHHHHhhCCCceEEEE
Q psy437 99 SVAAALAQE--RIN-AISYHAGLAD----KLRNEVQMKWISNKVHLYNV 140 (184)
Q Consensus 99 ~~a~gL~~~--gi~-~~vih~~~p~----~~r~~~~~~f~~~~~~v~va 140 (184)
|.||.+. ..+ +.+|-.|-.+ ..-+..||-.....+.|+-.
T Consensus 1104 --AGGLGINLTAADTViFYdSDWNPT~D~QAMDRAHRLGQTrdvtvyrl 1150 (1185)
T KOG0388|consen 1104 --AGGLGINLTAADTVIFYDSDWNPTADQQAMDRAHRLGQTRDVTVYRL 1150 (1185)
T ss_pred --cCcccccccccceEEEecCCCCcchhhHHHHHHHhccCccceeeeee
Confidence 6677543 233 2344444444 44455666666666666543
No 262
>smart00450 RHOD Rhodanese Homology Domain. An alpha beta fold found duplicated in the Rhodanese protein. The the Cysteine containing enzymatically active version of the domain is also found in the CDC25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and stress proteins such as Senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions with a loss of the cysteine are also seen in Dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases. These are likely to play a role in protein interactions.
Probab=87.21 E-value=0.94 Score=29.32 Aligned_cols=38 Identities=16% Similarity=0.281 Sum_probs=32.0
Q ss_pred CCCcEEEEeccHHHHHHHHHHHHhCCCe-eEEecCCCCH
Q psy437 33 SGQSGIVYCLTRKECDSVAAALAQERIN-AISYHAGLAD 70 (184)
Q Consensus 33 ~~~~~IIf~~tr~~~e~la~~L~~~gi~-~~~~hg~l~~ 70 (184)
+..+.|+||.+-..+..++..|...|+. +..+.||+..
T Consensus 55 ~~~~iv~~c~~g~~a~~~~~~l~~~G~~~v~~l~GG~~~ 93 (100)
T smart00450 55 KDKPVVVYCRSGNRSAKAAWLLRELGFKNVYLLDGGYKE 93 (100)
T ss_pred CCCeEEEEeCCCcHHHHHHHHHHHcCCCceEEecCCHHH
Confidence 4566888999988899999999999998 7888999753
No 263
>COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion]
Probab=86.89 E-value=1.4 Score=40.75 Aligned_cols=87 Identities=15% Similarity=0.120 Sum_probs=59.0
Q ss_pred CCCCCCCeEEEEEE-----ccChHHHHHHHHHhh-cCCCcEEEEeccHHHHHHHHHHHHhCCCeeEEecCCCCHHHHHHH
Q psy437 3 SSFNRANLKYEILP-----KKNVLKEVISLIKAK-YSGQSGIVYCLTRKECDSVAAALAQERINAISYHAGLADKLRNEV 76 (184)
Q Consensus 3 ~s~~R~Nl~y~v~~-----~~~k~~~L~~~l~~~-~~~~~~IIf~~tr~~~e~la~~L~~~gi~~~~~hg~l~~~~R~~~ 76 (184)
-+.+||++...-.. ...|+..+++.+... ..+.|.||-+.+.+..|.+++.|.+.|++..++.+.-..++-..+
T Consensus 392 iPTnrp~~R~D~~D~vy~t~~~K~~Aiv~~I~~~~~~gqPvLvgT~sie~SE~ls~~L~~~~i~h~VLNAk~h~~EA~Ii 471 (822)
T COG0653 392 IPTNRPIIRLDEPDLVYKTEEEKFKAIVEDIKERHEKGQPVLVGTVSIEKSELLSKLLRKAGIPHNVLNAKNHAREAEII 471 (822)
T ss_pred ccCCCcccCCCCccccccchHHHHHHHHHHHHHHHhcCCCEEEcCcceecchhHHHHHHhcCCCceeeccccHHHHHHHH
Confidence 35677776432221 123788887777643 367889999999999999999999999998887776553333333
Q ss_pred HHHHhccCc-eEEEEEe
Q psy437 77 QMKWISNKV-HVGHWTV 92 (184)
Q Consensus 77 ~~~f~~g~~-~vlVaT~ 92 (184)
-+. |+. .|=|||+
T Consensus 472 a~A---G~~gaVTiATN 485 (822)
T COG0653 472 AQA---GQPGAVTIATN 485 (822)
T ss_pred hhc---CCCCccccccc
Confidence 322 333 3458888
No 264
>KOG0389|consensus
Probab=86.87 E-value=12 Score=34.83 Aligned_cols=114 Identities=10% Similarity=0.069 Sum_probs=84.8
Q ss_pred ChHHHHHHHHHhhc-CCCcEEEEeccHHHHHHHHHHHHhCCCeeEEecCCCCHHHHHHHHHHHhccCce--EEEEEeecc
Q psy437 19 NVLKEVISLIKAKY-SGQSGIVYCLTRKECDSVAAALAQERINAISYHAGLADKLRNEVQMKWISNKVH--VGHWTVVSK 95 (184)
Q Consensus 19 ~k~~~L~~~l~~~~-~~~~~IIf~~tr~~~e~la~~L~~~gi~~~~~hg~l~~~~R~~~~~~f~~g~~~--vlVaT~tr~ 95 (184)
.|+..|..+|.+.. .+.+++||..-....+.+-..|.-.++.-.-+.|...-.+|..++++|-..+.- .|..|.
T Consensus 761 gK~r~L~~LLp~~k~~G~RVLiFSQFTqmLDILE~~L~~l~~~ylRLDGsTqV~~RQ~lId~Fn~d~difVFLLSTK--- 837 (941)
T KOG0389|consen 761 GKCRKLKELLPKIKKKGDRVLIFSQFTQMLDILEVVLDTLGYKYLRLDGSTQVNDRQDLIDEFNTDKDIFVFLLSTK--- 837 (941)
T ss_pred hhHhHHHHHHHHHhhcCCEEEEeeHHHHHHHHHHHHHHhcCceEEeecCCccchHHHHHHHhhccCCceEEEEEeec---
Confidence 47777777775432 457899999888888888999999999999999998889999999999886642 345555
Q ss_pred cHHHHHHHH--HhcCCcEEEeeCCCC------hHHHHHHHHHhhCCCceEEEEE
Q psy437 96 ECDSVAAAL--AQERINAISYHAGLA------DKLRNEVQMKWISNKVHLYNVW 141 (184)
Q Consensus 96 ~~e~~a~gL--~~~gi~~~vih~~~p------~~~r~~~~~~f~~~~~~v~va~ 141 (184)
|.|+ +--+-+ .||=+|+. ...++..||.+....+.|+=.+
T Consensus 838 -----AGG~GINLt~An-~VIihD~dFNP~dD~QAEDRcHRvGQtkpVtV~rLI 885 (941)
T KOG0389|consen 838 -----AGGFGINLTCAN-TVIIHDIDFNPYDDKQAEDRCHRVGQTKPVTVYRLI 885 (941)
T ss_pred -----cCcceecccccc-eEEEeecCCCCcccchhHHHHHhhCCcceeEEEEEE
Confidence 5455 444555 44444442 4668889999998888777654
No 265
>KOG2340|consensus
Probab=86.74 E-value=1.9 Score=38.06 Aligned_cols=85 Identities=7% Similarity=-0.006 Sum_probs=67.0
Q ss_pred cEEEEeccHHHHHHHHHHHHhCCCeeEEecCCCCHHHHHHHHHHHhccCceEEEEEeecccHHHHH--HHHHhcCCcEEE
Q psy437 36 SGIVYCLTRKECDSVAAALAQERINAISYHAGLADKLRNEVQMKWISNKVHVGHWTVVSKECDSVA--AALAQERINAIS 113 (184)
Q Consensus 36 ~~IIf~~tr~~~e~la~~L~~~gi~~~~~hg~l~~~~R~~~~~~f~~g~~~vlVaT~tr~~~e~~a--~gL~~~gi~~~v 113 (184)
-++||.|+--+--.+-.++.+.++....+|---++..-.+.-+-|..|..++|++|. ++. +.-.+.||+ .|
T Consensus 554 ~~LiyIPSYfDFVRvRNy~K~e~i~F~~i~EYssk~~vsRAR~lF~qgr~~vlLyTE------R~hffrR~~ikGVk-~v 626 (698)
T KOG2340|consen 554 GILIYIPSYFDFVRVRNYMKKEEISFVMINEYSSKSKVSRARELFFQGRKSVLLYTE------RAHFFRRYHIKGVK-NV 626 (698)
T ss_pred ceEEEecchhhHHHHHHHhhhhhcchHHHhhhhhHhhhhHHHHHHHhcCceEEEEeh------hhhhhhhheeccee-eE
Confidence 369999999999999999999888776666555555556667789999999999999 433 445788998 88
Q ss_pred eeCCCChHHHHHHH
Q psy437 114 YHAGLADKLRNEVQ 127 (184)
Q Consensus 114 ih~~~p~~~r~~~~ 127 (184)
+-|++|..+.-|.-
T Consensus 627 VfYqpP~~P~FYsE 640 (698)
T KOG2340|consen 627 VFYQPPNNPHFYSE 640 (698)
T ss_pred EEecCCCCcHHHHH
Confidence 88999987765543
No 266
>KOG0949|consensus
Probab=86.51 E-value=1 Score=42.33 Aligned_cols=65 Identities=18% Similarity=0.130 Sum_probs=49.1
Q ss_pred EEecCCCCHHHHHHHHHHHhccCceEEEEEeecccHHHHHHHHHhcCCcEEEeeCCCCh-HHHHHHHHHhhCC
Q psy437 62 ISYHAGLADKLRNEVQMKWISNKVHVGHWTVVSKECDSVAAALAQERINAISYHAGLAD-KLRNEVQMKWISN 133 (184)
Q Consensus 62 ~~~hg~l~~~~R~~~~~~f~~g~~~vlVaT~tr~~~e~~a~gL~~~gi~~~vih~~~p~-~~r~~~~~~f~~~ 133 (184)
.+.|+||....|..+.--|+.|+.+|++||. .++-|++-|--. +|+-+|-=| +.-+|-|-+.+.|
T Consensus 966 G~HHaglNr~yR~~VEvLFR~g~L~VlfaT~------TLsLGiNMPCrT-VvF~gDsLQL~plny~QmaGRAG 1031 (1330)
T KOG0949|consen 966 GVHHAGLNRKYRSLVEVLFRQGHLQVLFATE------TLSLGINMPCRT-VVFAGDSLQLDPLNYKQMAGRAG 1031 (1330)
T ss_pred cccccccchHHHHHHHHHhhcCceEEEEEee------ehhcccCCCcee-EEEeccccccCchhHHhhhcccc
Confidence 4589999999999999999999999999999 556666666543 666555333 5566777665554
No 267
>cd01529 4RHOD_Repeats Member of the Rhodanese Homology Domain superfamily. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. Only the second and most of the fourth repeats contain the putative catalytic Cys residue. This CD aligns the 1st , 2nd, 3rd, and 4th repeats.
Probab=86.35 E-value=1.8 Score=28.56 Aligned_cols=37 Identities=11% Similarity=-0.015 Sum_probs=30.4
Q ss_pred CCCcEEEEeccHHHHHHHHHHHHhCCC-eeEEecCCCC
Q psy437 33 SGQSGIVYCLTRKECDSVAAALAQERI-NAISYHAGLA 69 (184)
Q Consensus 33 ~~~~~IIf~~tr~~~e~la~~L~~~gi-~~~~~hg~l~ 69 (184)
+..+.|+||.+-..+...+..|...|+ ++..+.||+.
T Consensus 55 ~~~~ivv~c~~g~~s~~~~~~l~~~G~~~v~~l~GG~~ 92 (96)
T cd01529 55 RATRYVLTCDGSLLARFAAQELLALGGKPVALLDGGTS 92 (96)
T ss_pred CCCCEEEEeCChHHHHHHHHHHHHcCCCCEEEeCCCHH
Confidence 456788999998888888999998998 4777888874
No 268
>cd01444 GlpE_ST GlpE sulfurtransferase (ST) and homologs are members of the Rhodanese Homology Domain superfamily. Unlike other rhodanese sulfurtransferases, GlpE is a single domain protein but indications are that it functions as a dimer. The active site contains a catalytically active cysteine.
Probab=86.33 E-value=2.4 Score=27.65 Aligned_cols=46 Identities=17% Similarity=0.281 Sum_probs=34.0
Q ss_pred HHHHHHhhcCCCcEEEEeccHHHHHHHHHHHHhCCCe-eEEecCCCC
Q psy437 24 VISLIKAKYSGQSGIVYCLTRKECDSVAAALAQERIN-AISYHAGLA 69 (184)
Q Consensus 24 L~~~l~~~~~~~~~IIf~~tr~~~e~la~~L~~~gi~-~~~~hg~l~ 69 (184)
+.+.+....+..+.++||.+-..+...+..|...|+. +..+.||+.
T Consensus 46 ~~~~~~~~~~~~~ivv~c~~g~~s~~a~~~l~~~G~~~v~~l~gG~~ 92 (96)
T cd01444 46 LDDWLGDLDRDRPVVVYCYHGNSSAQLAQALREAGFTDVRSLAGGFE 92 (96)
T ss_pred HHHHHhhcCCCCCEEEEeCCCChHHHHHHHHHHcCCceEEEcCCCHH
Confidence 3334433225567888999988999999999999985 667888864
No 269
>KOG0384|consensus
Probab=86.05 E-value=2.3 Score=40.85 Aligned_cols=97 Identities=10% Similarity=0.058 Sum_probs=79.2
Q ss_pred HHHHHhccCceEEEEEeecccHHHHHHHHHhcCCcEEEeeCCCChHHHHHHHHHhhCCCceEEEE----------EecCC
Q psy437 76 VQMKWISNKVHVGHWTVVSKECDSVAAALAQERINAISYHAGLADKLRNEVQMKWISNKVHLYNV----------WKIQW 145 (184)
Q Consensus 76 ~~~~f~~g~~~vlVaT~tr~~~e~~a~gL~~~gi~~~vih~~~p~~~r~~~~~~f~~~~~~v~va----------~D~~~ 145 (184)
++-+++.+.-+|||++-=-++.+.+|.+|...+++---+-|.+|...|.....-|-.-...-+|+ ++..-
T Consensus 691 LL~rLk~~GHrVLIFSQMVRmLDIL~eYL~~r~ypfQRLDGsvrgelRq~AIDhFnap~SddFvFLLSTRAGGLGINLat 770 (1373)
T KOG0384|consen 691 LLPRLKEGGHRVLIFSQMVRMLDILAEYLSLRGYPFQRLDGSVRGELRQQAIDHFNAPDSDDFVFLLSTRAGGLGINLAT 770 (1373)
T ss_pred HHHHHhcCCceEEEhHHHHHHHHHHHHHHHHcCCcceeccCCcchHHHHHHHHhccCCCCCceEEEEecccCcccccccc
Confidence 45555667778999998888999999999999999888999999999999999997655555554 47777
Q ss_pred ccEEEecCCCCCccccccccccc-cCCc
Q psy437 146 KRIIWIHSLVLIKPDYLPPILDL-RLGR 172 (184)
Q Consensus 146 vr~v~~~~~p~~~e~y~~~i~~~-~~~r 172 (184)
-..||.||-=..+.+-+|-..+- |.|-
T Consensus 771 ADTVIIFDSDWNPQNDLQAqARaHRIGQ 798 (1373)
T KOG0384|consen 771 ADTVIIFDSDWNPQNDLQAQARAHRIGQ 798 (1373)
T ss_pred cceEEEeCCCCCcchHHHHHHHHHhhcc
Confidence 78999999999999988887653 5553
No 270
>cd06281 PBP1_LacI_like_5 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=85.97 E-value=11 Score=29.19 Aligned_cols=62 Identities=13% Similarity=0.045 Sum_probs=29.7
Q ss_pred HHHHHHHhCCCeeEEecCCCCHHHHHHHHHHHhccCceEEEE------------EeecccHHHHHHHHHhcCCcEE
Q psy437 49 SVAAALAQERINAISYHAGLADKLRNEVQMKWISNKVHVGHW------------TVVSKECDSVAAALAQERINAI 112 (184)
Q Consensus 49 ~la~~L~~~gi~~~~~hg~l~~~~R~~~~~~f~~g~~~vlVa------------T~tr~~~e~~a~gL~~~gi~~~ 112 (184)
.+.+.|...++....+.+..... ...++.+.+..+++++. ++-......+++.|-..|.+-.
T Consensus 46 ~~i~~l~~~~vdgii~~~~~~~~--~~~~~~~~~~~ipvV~i~~~~~~~~~~V~~d~~~~g~~a~~~l~~~G~~~i 119 (269)
T cd06281 46 EILRSFEQRRMDGIIIAPGDERD--PELVDALASLDLPIVLLDRDMGGGADAVLFDHAAGMRQAVEYLISLGHRRI 119 (269)
T ss_pred HHHHHHHHcCCCEEEEecCCCCc--HHHHHHHHhCCCCEEEEecccCCCCCEEEECcHHHHHHHHHHHHHCCCcEE
Confidence 44445555566555544432211 23344444444444333 3333455667777766676633
No 271
>KOG0922|consensus
Probab=85.85 E-value=16 Score=33.15 Aligned_cols=163 Identities=10% Similarity=0.031 Sum_probs=101.6
Q ss_pred CCeE-EEEEEccC------hHHHHHHHHHhhcC--CC-cEEEEeccHHHHHHHHHHHHhC--------CCeeEEecCCCC
Q psy437 8 ANLK-YEILPKKN------VLKEVISLIKAKYS--GQ-SGIVYCLTRKECDSVAAALAQE--------RINAISYHAGLA 69 (184)
Q Consensus 8 ~Nl~-y~v~~~~~------k~~~L~~~l~~~~~--~~-~~IIf~~tr~~~e~la~~L~~~--------gi~~~~~hg~l~ 69 (184)
|+|. |+|.--++ ..+.|+.+|++... +. +.||-..| -+++..++++... .+++..+|-.-+
T Consensus 159 p~LskYsvIIlDEAHERsl~TDiLlGlLKki~~~R~~LklIimSAT-lda~kfS~yF~~a~i~~i~GR~fPVei~y~~~p 237 (674)
T KOG0922|consen 159 PLLSKYSVIILDEAHERSLHTDILLGLLKKILKKRPDLKLIIMSAT-LDAEKFSEYFNNAPILTIPGRTFPVEILYLKEP 237 (674)
T ss_pred CccccccEEEEechhhhhhHHHHHHHHHHHHHhcCCCceEEEEeee-ecHHHHHHHhcCCceEeecCCCCceeEEeccCC
Confidence 4453 66654331 34555555554322 22 34444444 4588999999763 356666555433
Q ss_pred HHH----HHHHHHH--HhccCceEEEEEeecccHHHHHHHHHhc------CCc--EEEeeCCCChHHHHHHHHHhhCCCc
Q psy437 70 DKL----RNEVQMK--WISNKVHVGHWTVVSKECDSVAAALAQE------RIN--AISYHAGLADKLRNEVQMKWISNKV 135 (184)
Q Consensus 70 ~~~----R~~~~~~--f~~g~~~vlVaT~tr~~~e~~a~gL~~~------gi~--~~vih~~~p~~~r~~~~~~f~~~~~ 135 (184)
..+ -..+.-+ .......|||+-.+..++|.++..|... +++ .+.+|+.||......+-+.-..|.-
T Consensus 238 ~~dYv~a~~~tv~~Ih~~E~~GDILvFLtGqeEIe~~~~~l~e~~~~~~~~~~~~~lply~aL~~e~Q~rvF~p~p~g~R 317 (674)
T KOG0922|consen 238 TADYVDAALITVIQIHLTEPPGDILVFLTGQEEIEAACELLRERAKSLPEDCPELILPLYGALPSEEQSRVFDPAPPGKR 317 (674)
T ss_pred chhhHHHHHHHHHHHHccCCCCCEEEEeCCHHHHHHHHHHHHHHhhhccccCcceeeeecccCCHHHhhccccCCCCCcc
Confidence 211 1111111 1134558999999999999988888433 221 2669999999998887777777888
Q ss_pred eEEEE-------EecCCccEEEecCC------------------CCCccccccccccccCCcc
Q psy437 136 HLYNV-------WKIQWKRIIWIHSL------------------VLIKPDYLPPILDLRLGRE 173 (184)
Q Consensus 136 ~v~va-------~D~~~vr~v~~~~~------------------p~~~e~y~~~i~~~~~~r~ 173 (184)
+|+++ .-||.|++|+.-.. |-|..+-.||- +|+||+
T Consensus 318 KvIlsTNIAETSlTI~GI~YVVDsG~vK~~~y~p~~g~~~L~v~~ISkasA~QRa--GRAGRt 378 (674)
T KOG0922|consen 318 KVILSTNIAETSLTIDGIRYVVDSGFVKQKKYNPRTGLDSLIVVPISKASANQRA--GRAGRT 378 (674)
T ss_pred eEEEEcceeeeeEEecceEEEEcCCceEEEeeccccCccceeEEechHHHHhhhc--ccCCCC
Confidence 88888 58899999976543 33455556665 588886
No 272
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=85.71 E-value=6.1 Score=35.98 Aligned_cols=84 Identities=14% Similarity=0.136 Sum_probs=60.2
Q ss_pred CceEEEEEeecccHHHHHHHHHhc-----CCcEEEeeCCCChHH---------------------HHHHHHHhhC-CCce
Q psy437 84 KVHVGHWTVVSKECDSVAAALAQE-----RINAISYHAGLADKL---------------------RNEVQMKWIS-NKVH 136 (184)
Q Consensus 84 ~~~vlVaT~tr~~~e~~a~gL~~~-----gi~~~vih~~~p~~~---------------------r~~~~~~f~~-~~~~ 136 (184)
..+.+|+|.++..|..+...|+.. +..+.|++++-+.+. ...+.+.|+. +.+.
T Consensus 514 ~~kamvv~~sr~~a~~~~~~l~~~~~~~~~~~~vv~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fk~~~~~~ 593 (667)
T TIGR00348 514 KFKAMVVAISRYACVEEKNALDEELNEKFEASAIVMTGKESDDAEIRDYNKHIRTKFDKSDGFEIYYKDLERFKKEENPK 593 (667)
T ss_pred cCceeEEEecHHHHHHHHHHHHhhcccccCCeeEEecCCccchhHHHHHHHHhccccccchhhhHHHHHHHHhcCCCCce
Confidence 367899999999999888887543 345678887755431 1245566765 5666
Q ss_pred EEEE-------EecCCccEEEecCCCCCccccccccccc
Q psy437 137 LYNV-------WKIQWKRIIWIHSLVLIKPDYLPPILDL 168 (184)
Q Consensus 137 v~va-------~D~~~vr~v~~~~~p~~~e~y~~~i~~~ 168 (184)
|++. ||.|.+..++..-+.++. ..+|-|.|+
T Consensus 594 ilIVvdmllTGFDaP~l~tLyldKplk~h-~LlQai~R~ 631 (667)
T TIGR00348 594 LLIVVDMLLTGFDAPILNTLYLDKPLKYH-GLLQAIART 631 (667)
T ss_pred EEEEEcccccccCCCccceEEEecccccc-HHHHHHHHh
Confidence 6665 799999999887776654 589999763
No 273
>cd01526 RHOD_ThiF Member of the Rhodanese Homology Domain superfamily. This CD includes several putative molybdopterin synthase sulfurylases including the molybdenum cofactor biosynthetic protein (CnxF) of Aspergillus nidulans and the molybdenum cofactor synthesis protein 3 (MOCS3) of Homo sapiens. These rhodanese-like domains are found C-terminal of the ThiF and MoeZ_MoeB domains.
Probab=85.62 E-value=1 Score=31.39 Aligned_cols=38 Identities=13% Similarity=0.161 Sum_probs=31.8
Q ss_pred CCCcEEEEeccHHHHHHHHHHHHhCCC--eeEEecCCCCH
Q psy437 33 SGQSGIVYCLTRKECDSVAAALAQERI--NAISYHAGLAD 70 (184)
Q Consensus 33 ~~~~~IIf~~tr~~~e~la~~L~~~gi--~~~~~hg~l~~ 70 (184)
+..+.++||.+-..+...+..|...|+ ++..+.||+..
T Consensus 71 ~~~~ivv~C~~G~rs~~aa~~L~~~G~~~~v~~l~GG~~~ 110 (122)
T cd01526 71 KDSPIYVVCRRGNDSQTAVRKLKELGLERFVRDIIGGLKA 110 (122)
T ss_pred CCCcEEEECCCCCcHHHHHHHHHHcCCccceeeecchHHH
Confidence 456788899998888889999999999 58889999753
No 274
>PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein. It functions as a docking protein to recruit essential components of the viral replication machinery to viral DNA origins. In the presence of the major DNA-binding protein, it opens dsDNA which leads to a conformational change in the origin that facilitates DNA unwinding and subsequent replication [].; GO: 0003688 DNA replication origin binding, 0005524 ATP binding, 0006260 DNA replication
Probab=84.50 E-value=7.5 Score=36.09 Aligned_cols=102 Identities=17% Similarity=0.112 Sum_probs=65.6
Q ss_pred CCCcEEEEeccHHHHHHHHHHHHhCCCeeEEecCCCCHHHHHHHHHHHhccCceEEEEEeecccHHHHHHHHHhcCC--c
Q psy437 33 SGQSGIVYCLTRKECDSVAAALAQERINAISYHAGLADKLRNEVQMKWISNKVHVGHWTVVSKECDSVAAALAQERI--N 110 (184)
Q Consensus 33 ~~~~~IIf~~tr~~~e~la~~L~~~gi~~~~~hg~l~~~~R~~~~~~f~~g~~~vlVaT~tr~~~e~~a~gL~~~gi--~ 110 (184)
.+...-||++|...++.+++.....+.++..+.|.-+..+ + +.| ++.+|+|||+ .+.-|++.... +
T Consensus 281 ~gknIcvfsSt~~~~~~v~~~~~~~~~~Vl~l~s~~~~~d---v-~~W--~~~~VviYT~------~itvG~Sf~~~HF~ 348 (824)
T PF02399_consen 281 AGKNICVFSSTVSFAEIVARFCARFTKKVLVLNSTDKLED---V-ESW--KKYDVVIYTP------VITVGLSFEEKHFD 348 (824)
T ss_pred CCCcEEEEeChHHHHHHHHHHHHhcCCeEEEEcCCCCccc---c-ccc--cceeEEEEec------eEEEEeccchhhce
Confidence 4556678999999999999988888888888887655442 2 333 5689999999 66677765433 2
Q ss_pred -EEEe--eCCCChHHHHHHHHHhhC---CCceEEEEEecCCc
Q psy437 111 -AISY--HAGLADKLRNEVQMKWIS---NKVHLYNVWKIQWK 146 (184)
Q Consensus 111 -~~vi--h~~~p~~~r~~~~~~f~~---~~~~v~va~D~~~v 146 (184)
.++| ......+..+-+|-.++- ..-.+++.+|-..+
T Consensus 349 ~~f~yvk~~~~gpd~~s~~Q~lgRvR~l~~~ei~v~~d~~~~ 390 (824)
T PF02399_consen 349 SMFAYVKPMSYGPDMVSVYQMLGRVRSLLDNEIYVYIDASGA 390 (824)
T ss_pred EEEEEecCCCCCCcHHHHHHHHHHHHhhccCeEEEEEecccc
Confidence 2223 122235566667766542 23366666555433
No 275
>cd01532 4RHOD_Repeat_1 Member of the Rhodanese Homology Domain superfamily, repeat 1. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 1st repeat which does not contain the putative catalytic Cys residue.
Probab=83.87 E-value=2.1 Score=28.09 Aligned_cols=36 Identities=17% Similarity=0.138 Sum_probs=28.5
Q ss_pred CCcEEEEecc--HHHHHHHHHHHHhCCCe-eEEecCCCC
Q psy437 34 GQSGIVYCLT--RKECDSVAAALAQERIN-AISYHAGLA 69 (184)
Q Consensus 34 ~~~~IIf~~t--r~~~e~la~~L~~~gi~-~~~~hg~l~ 69 (184)
..+.++||.+ +..+...+..|.+.|+. +..+.||+.
T Consensus 50 ~~~ivl~c~~G~~~~s~~aa~~L~~~G~~~v~~l~GG~~ 88 (92)
T cd01532 50 DTPIVVYGEGGGEDLAPRAARRLSELGYTDVALLEGGLQ 88 (92)
T ss_pred CCeEEEEeCCCCchHHHHHHHHHHHcCccCEEEccCCHH
Confidence 5578889998 56677888999999984 777888874
No 276
>KOG0389|consensus
Probab=83.54 E-value=9.2 Score=35.45 Aligned_cols=63 Identities=14% Similarity=0.097 Sum_probs=45.2
Q ss_pred HHHhhcCCCcEEEEeccHHHHHHHHHHHHh--CCCeeEEecCCCCHHHHHHHHHHHhcc--CceEEEEEe
Q psy437 27 LIKAKYSGQSGIVYCLTRKECDSVAAALAQ--ERINAISYHAGLADKLRNEVQMKWISN--KVHVGHWTV 92 (184)
Q Consensus 27 ~l~~~~~~~~~IIf~~tr~~~e~la~~L~~--~gi~~~~~hg~l~~~~R~~~~~~f~~g--~~~vlVaT~ 92 (184)
+|++...++|-+|.||+-. .+.+-..|.+ ..+.+..|||. +++|..+-..+.++ ...||+.|=
T Consensus 441 yLkq~g~~gpHLVVvPsST-leNWlrEf~kwCPsl~Ve~YyGS--q~ER~~lR~~i~~~~~~ydVllTTY 507 (941)
T KOG0389|consen 441 YLKQIGNPGPHLVVVPSST-LENWLREFAKWCPSLKVEPYYGS--QDERRELRERIKKNKDDYDVLLTTY 507 (941)
T ss_pred HHHHcCCCCCcEEEecchh-HHHHHHHHHHhCCceEEEeccCc--HHHHHHHHHHHhccCCCccEEEEEe
Confidence 3444445788899999744 3444444443 36889999996 68999998888876 678888775
No 277
>cd01535 4RHOD_Repeat_4 Member of the Rhodanese Homology Domain superfamily, repeat 4. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 4th repeat which, in general, contains the putative catalytic Cys residue.
Probab=83.39 E-value=4.1 Score=29.45 Aligned_cols=48 Identities=15% Similarity=0.151 Sum_probs=35.5
Q ss_pred HHHHHHHHhhcCCCcEEEEeccHHHHHHHHHHHHhCCC-eeEEecCCCC
Q psy437 22 KEVISLIKAKYSGQSGIVYCLTRKECDSVAAALAQERI-NAISYHAGLA 69 (184)
Q Consensus 22 ~~L~~~l~~~~~~~~~IIf~~tr~~~e~la~~L~~~gi-~~~~~hg~l~ 69 (184)
..|...+.......+.||+|.+-..+...+..|...|+ ++..+.||+.
T Consensus 37 ~~l~~~l~~l~~~~~vVv~c~~g~~a~~aa~~L~~~G~~~v~~L~GG~~ 85 (145)
T cd01535 37 AQLAQALEKLPAAERYVLTCGSSLLARFAAADLAALTVKPVFVLEGGTA 85 (145)
T ss_pred HHHHHHHHhcCCCCCEEEEeCCChHHHHHHHHHHHcCCcCeEEecCcHH
Confidence 34444454332346788999998888888999998888 6888999964
No 278
>smart00492 HELICc3 helicase superfamily c-terminal domain.
Probab=83.24 E-value=5 Score=28.94 Aligned_cols=47 Identities=13% Similarity=0.021 Sum_probs=33.1
Q ss_pred CCCHHHHHHHHHHHhccCc-eEEEEEeecccHHHHHHHHHhcCCcE-EEeeCCCC
Q psy437 67 GLADKLRNEVQMKWISNKV-HVGHWTVVSKECDSVAAALAQERINA-ISYHAGLA 119 (184)
Q Consensus 67 ~l~~~~R~~~~~~f~~g~~-~vlVaT~tr~~~e~~a~gL~~~gi~~-~vih~~~p 119 (184)
+.+..+...++++|+...- .||++|. .+++|+|.+|-.+ .|+=.++|
T Consensus 30 ~~~~~~~~~~l~~f~~~~~~~iL~~~~------~~~EGiD~~g~~~r~vii~glP 78 (141)
T smart00492 30 GEDGKETGKLLEKYVEACENAILLATA------RFSEGVDFPGDYLRAVIIDGLP 78 (141)
T ss_pred CCChhHHHHHHHHHHHcCCCEEEEEcc------ceecceecCCCCeeEEEEEecC
Confidence 4455567888999987543 6899888 4688999887431 55556676
No 279
>cd01521 RHOD_PspE2 Member of the Rhodanese Homology Domain superfamily. This CD includes the putative rhodanese-like protein, Psp2, of Yersinia pestis biovar Medievalis and other similar uncharacterized proteins.
Probab=83.19 E-value=2.1 Score=29.05 Aligned_cols=38 Identities=21% Similarity=0.183 Sum_probs=30.3
Q ss_pred CCCcEEEEeccH--HHHHHHHHHHHhCCCeeEEecCCCCH
Q psy437 33 SGQSGIVYCLTR--KECDSVAAALAQERINAISYHAGLAD 70 (184)
Q Consensus 33 ~~~~~IIf~~tr--~~~e~la~~L~~~gi~~~~~hg~l~~ 70 (184)
+..+.++||.+- ..+..++..|...|+++..+.||+..
T Consensus 63 ~~~~vvvyc~~g~~~~s~~~a~~l~~~G~~v~~l~GG~~~ 102 (110)
T cd01521 63 KEKLFVVYCDGPGCNGATKAALKLAELGFPVKEMIGGLDW 102 (110)
T ss_pred CCCeEEEEECCCCCchHHHHHHHHHHcCCeEEEecCCHHH
Confidence 456788899865 36788889999999998889999743
No 280
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=83.08 E-value=4.7 Score=37.39 Aligned_cols=89 Identities=11% Similarity=0.038 Sum_probs=54.6
Q ss_pred CCcEEEEeccHHHHHHHHHHHHhC-----CCeeEEecCCCCHHHHHHHHHHHhc-cCceEE-EEEeecccHHHHHHHHHh
Q psy437 34 GQSGIVYCLTRKECDSVAAALAQE-----RINAISYHAGLADKLRNEVQMKWIS-NKVHVG-HWTVVSKECDSVAAALAQ 106 (184)
Q Consensus 34 ~~~~IIf~~tr~~~e~la~~L~~~-----gi~~~~~hg~l~~~~R~~~~~~f~~-g~~~vl-VaT~tr~~~e~~a~gL~~ 106 (184)
.+++||||.+...|+.++..|.+. |--+..+.|+-+ +-...++.|.. ...+-| |..+ .+..|.|.
T Consensus 426 ~~KTIvFa~n~dHAe~i~~~~~~~ype~~~~~a~~IT~d~~--~~q~~Id~f~~ke~~P~Iaitvd------lL~TGiDv 497 (875)
T COG4096 426 IGKTIVFAKNHDHAERIREALVNEYPEYNGRYAMKITGDAE--QAQALIDNFIDKEKYPRIAITVD------LLTTGVDV 497 (875)
T ss_pred cCceEEEeeCcHHHHHHHHHHHHhCccccCceEEEEeccch--hhHHHHHHHHhcCCCCceEEehh------hhhcCCCc
Confidence 468999999999999999999864 233555555533 33455666665 444444 4444 77777777
Q ss_pred cCCcEEEeeCCCChHHHHHHHHHhh
Q psy437 107 ERINAISYHAGLADKLRNEVQMKWI 131 (184)
Q Consensus 107 ~gi~~~vih~~~p~~~r~~~~~~f~ 131 (184)
+-+-.+|+ .-.=.|.-.|.|-.++
T Consensus 498 pev~nlVF-~r~VrSktkF~QMvGR 521 (875)
T COG4096 498 PEVVNLVF-DRKVRSKTKFKQMVGR 521 (875)
T ss_pred hheeeeee-hhhhhhHHHHHHHhcC
Confidence 77653333 3333344445555544
No 281
>cd01528 RHOD_2 Member of the Rhodanese Homology Domain superfamily, subgroup 2. Subgroup 2 includes uncharacterized putative rhodanese-related domains.
Probab=83.06 E-value=1.8 Score=28.81 Aligned_cols=37 Identities=16% Similarity=0.260 Sum_probs=31.0
Q ss_pred CCcEEEEeccHHHHHHHHHHHHhCCCe-eEEecCCCCH
Q psy437 34 GQSGIVYCLTRKECDSVAAALAQERIN-AISYHAGLAD 70 (184)
Q Consensus 34 ~~~~IIf~~tr~~~e~la~~L~~~gi~-~~~~hg~l~~ 70 (184)
..+.++||.+-..+...+..|.+.|+. +..+.||+..
T Consensus 58 ~~~vv~~c~~g~rs~~~~~~l~~~G~~~v~~l~GG~~~ 95 (101)
T cd01528 58 DKDIVVLCHHGGRSMQVAQWLLRQGFENVYNLQGGIDA 95 (101)
T ss_pred CCeEEEEeCCCchHHHHHHHHHHcCCccEEEecCCHHH
Confidence 567889999988888899999999995 7788998754
No 282
>cd06267 PBP1_LacI_sugar_binding_like Ligand binding domain of the LacI tanscriptional regulator family belonging to the type I periplasmic-binding fold protein superfamily. Ligand binding domain of the LacI tanscriptional regulator family belonging to the type I periplasmic-binding fold protein superfamily. In most cases, ligands are monosaccharide including lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. The LacI family of proteins consists of transcriptional regulators related to the lac repressor. In this case, the domain sugar binding changes the DNA binding activity of the repressor domain.
Probab=83.05 E-value=18 Score=27.44 Aligned_cols=15 Identities=7% Similarity=-0.144 Sum_probs=7.6
Q ss_pred cHHHHHHHHHhcCCc
Q psy437 96 ECDSVAAALAQERIN 110 (184)
Q Consensus 96 ~~e~~a~gL~~~gi~ 110 (184)
....++..|...|..
T Consensus 103 ~g~~~~~~l~~~g~~ 117 (264)
T cd06267 103 GAYLAVEHLIELGHR 117 (264)
T ss_pred HHHHHHHHHHHCCCc
Confidence 344555566554543
No 283
>cd01534 4RHOD_Repeat_3 Member of the Rhodanese Homology Domain superfamily, repeat 3. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 3rd repeat which does not contain the putative catalytic Cys residue.
Probab=83.02 E-value=2 Score=28.24 Aligned_cols=36 Identities=25% Similarity=0.151 Sum_probs=29.1
Q ss_pred CCcEEEEeccHHHHHHHHHHHHhCCCeeEEecCCCC
Q psy437 34 GQSGIVYCLTRKECDSVAAALAQERINAISYHAGLA 69 (184)
Q Consensus 34 ~~~~IIf~~tr~~~e~la~~L~~~gi~~~~~hg~l~ 69 (184)
..+.++||.+-..+...+..|...|+.+..+.||+.
T Consensus 56 ~~~iv~~c~~G~rs~~aa~~L~~~G~~v~~l~GG~~ 91 (95)
T cd01534 56 GARIVLADDDGVRADMTASWLAQMGWEVYVLEGGLA 91 (95)
T ss_pred CCeEEEECCCCChHHHHHHHHHHcCCEEEEecCcHH
Confidence 456888999876677888899999999777888874
No 284
>cd06282 PBP1_GntR_like_2 Ligand-binding domain of putative DNA transcription repressors highly similar to that of the repressor specific for gluconate (GntR) which is a member of the LacI-GalR family of bacterial transcription regulators. This group includes the ligand-binding domain of putative DNA transcription repressors highly similar to that of the repressor specific for gluconate (GntR) which is a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding
Probab=82.91 E-value=19 Score=27.60 Aligned_cols=60 Identities=15% Similarity=0.042 Sum_probs=28.0
Q ss_pred HHHHHHHhCCCeeEEecCCCCHHHHHHHHHHHhccCceEEEE------------EeecccHHHHHHHHHhcCCc
Q psy437 49 SVAAALAQERINAISYHAGLADKLRNEVQMKWISNKVHVGHW------------TVVSKECDSVAAALAQERIN 110 (184)
Q Consensus 49 ~la~~L~~~gi~~~~~hg~l~~~~R~~~~~~f~~g~~~vlVa------------T~tr~~~e~~a~gL~~~gi~ 110 (184)
.+.+.|...++....+....... ...++.+....+++++. ++.......++..|...|.+
T Consensus 46 ~~~~~l~~~~vdgiii~~~~~~~--~~~~~~~~~~~ipvV~~~~~~~~~~~~v~~d~~~~g~~~~~~l~~~g~~ 117 (266)
T cd06282 46 DAVETLLRQRVDGLILTVADAAT--SPALDLLDAERVPYVLAYNDPQPGRPSVSVDNRAAARDVAQALAALGHR 117 (266)
T ss_pred HHHHHHHhcCCCEEEEecCCCCc--hHHHHHHhhCCCCEEEEeccCCCCCCEEeeCcHHHHHHHHHHHHHcCcc
Confidence 44455555566655554332211 12344444444444322 22223456666677666655
No 285
>PRK09189 uroporphyrinogen-III synthase; Validated
Probab=82.90 E-value=5.4 Score=31.10 Aligned_cols=84 Identities=10% Similarity=-0.050 Sum_probs=51.6
Q ss_pred hHHHHHHHHHhhcCCCcEEEEeccHHHHHHHHHHHHhCCCee---EEecCCCCHHHHHHHHHHHhccCceEEEEEeeccc
Q psy437 20 VLKEVISLIKAKYSGQSGIVYCLTRKECDSVAAALAQERINA---ISYHAGLADKLRNEVQMKWISNKVHVGHWTVVSKE 96 (184)
Q Consensus 20 k~~~L~~~l~~~~~~~~~IIf~~tr~~~e~la~~L~~~gi~~---~~~hg~l~~~~R~~~~~~f~~g~~~vlVaT~tr~~ 96 (184)
.-+.|.+.+.........|+|......-+.+.+.|.+.|+.+ .+|.-...........+.|..++..++++|++. .
T Consensus 103 ~~e~L~~~~~~~~~~~~~vL~~rg~~~r~~l~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~l~~~~~d~i~f~S~~-~ 181 (240)
T PRK09189 103 DGVRLAETVAAALAPTARLLYLAGRPRAPVFEDRLAAAGIPFRVAECYDMLPVMYSPATLSAILGGAPFDAVLLYSRV-A 181 (240)
T ss_pred CHHHHHHHHHHhcCCCCcEEEeccCcccchhHHHHHhCCCeeEEEEEEEeecCCCChHHHHHHHhcCCCCEEEEeCHH-H
Confidence 345666666543223344555545555688999999998764 446443333334466777888889999999865 3
Q ss_pred HHHHHHHH
Q psy437 97 CDSVAAAL 104 (184)
Q Consensus 97 ~e~~a~gL 104 (184)
++.....+
T Consensus 182 ~~~f~~~~ 189 (240)
T PRK09189 182 ARRFFALM 189 (240)
T ss_pred HHHHHHHH
Confidence 44444433
No 286
>cd01449 TST_Repeat_2 Thiosulfate sulfurtransferase (TST), C-terminal, catalytic domain. TST contains 2 copies of the Rhodanese Homology Domain; this is the second repeat. Only the second repeat contains the catalytically active Cys residue.
Probab=82.20 E-value=4.3 Score=27.65 Aligned_cols=37 Identities=19% Similarity=0.200 Sum_probs=30.2
Q ss_pred CCCcEEEEeccHHHHHHHHHHHHhCCCe-eEEecCCCC
Q psy437 33 SGQSGIVYCLTRKECDSVAAALAQERIN-AISYHAGLA 69 (184)
Q Consensus 33 ~~~~~IIf~~tr~~~e~la~~L~~~gi~-~~~~hg~l~ 69 (184)
+..+.|+||.+-..+...+..|...|++ +..|-||+.
T Consensus 77 ~~~~iv~yc~~g~~s~~~~~~l~~~G~~~v~~l~GG~~ 114 (118)
T cd01449 77 PDKPVIVYCGSGVTACVLLLALELLGYKNVRLYDGSWS 114 (118)
T ss_pred CCCCEEEECCcHHHHHHHHHHHHHcCCCCeeeeCChHH
Confidence 4567888999977888899999999985 777888863
No 287
>cd01518 RHOD_YceA Member of the Rhodanese Homology Domain superfamily. This CD includes Escherichia coli YceA, Bacillus subtilis YbfQ, and similar uncharacterized proteins.
Probab=81.98 E-value=1.8 Score=28.79 Aligned_cols=37 Identities=19% Similarity=0.494 Sum_probs=29.5
Q ss_pred CCCcEEEEeccHHHHHHHHHHHHhCCCe-eEEecCCCC
Q psy437 33 SGQSGIVYCLTRKECDSVAAALAQERIN-AISYHAGLA 69 (184)
Q Consensus 33 ~~~~~IIf~~tr~~~e~la~~L~~~gi~-~~~~hg~l~ 69 (184)
+..+.||||.+-..+...+..|...|+. +..+.||+.
T Consensus 60 ~~~~ivvyC~~G~rs~~a~~~L~~~G~~~v~~l~GG~~ 97 (101)
T cd01518 60 KGKKVLMYCTGGIRCEKASAYLKERGFKNVYQLKGGIL 97 (101)
T ss_pred CCCEEEEECCCchhHHHHHHHHHHhCCcceeeechhHH
Confidence 4567888999877777888899999995 777888864
No 288
>PRK12901 secA preprotein translocase subunit SecA; Reviewed
Probab=81.95 E-value=3.5 Score=39.28 Aligned_cols=89 Identities=17% Similarity=-0.016 Sum_probs=68.9
Q ss_pred cCceEEEEEeecccHHHHHHHHHhcCCcEEEeeCCCChHHHHHHHHHhhCCCceEEEE-----EecCC--------ccEE
Q psy437 83 NKVHVGHWTVVSKECDSVAAALAQERINAISYHAGLADKLRNEVQMKWISNKVHLYNV-----WKIQW--------KRII 149 (184)
Q Consensus 83 g~~~vlVaT~tr~~~e~~a~gL~~~gi~~~vih~~~p~~~r~~~~~~f~~~~~~v~va-----~D~~~--------vr~v 149 (184)
..-+|||.|.+-...|.+++.|...||+.-|+|+-.-...-.-+-+..+.|.++|-.- -||.- ==+|
T Consensus 627 ~GrPVLVGT~SVe~SE~lS~~L~~~gI~H~VLNAK~h~~EAeIVA~AG~~GaVTIATNMAGRGTDIkLg~~V~e~GGL~V 706 (1112)
T PRK12901 627 AGRPVLVGTTSVEISELLSRMLKMRKIPHNVLNAKLHQKEAEIVAEAGQPGTVTIATNMAGRGTDIKLSPEVKAAGGLAI 706 (1112)
T ss_pred CCCCEEEEeCcHHHHHHHHHHHHHcCCcHHHhhccchhhHHHHHHhcCCCCcEEEeccCcCCCcCcccchhhHHcCCCEE
Confidence 3457999999999999999999999999889999877777777777788887666553 26642 2467
Q ss_pred EecCCCCCccccccccccccCCcc
Q psy437 150 WIHSLVLIKPDYLPPILDLRLGRE 173 (184)
Q Consensus 150 ~~~~~p~~~e~y~~~i~~~~~~r~ 173 (184)
|-...+.| .-+-+.|++|+||-
T Consensus 707 IgTerheS--rRID~QLrGRaGRQ 728 (1112)
T PRK12901 707 IGTERHES--RRVDRQLRGRAGRQ 728 (1112)
T ss_pred EEccCCCc--HHHHHHHhcccccC
Confidence 77777665 35667788999996
No 289
>PF01751 Toprim: Toprim domain; InterPro: IPR006171 This is a conserved region from DNA primase. This corresponds to the Toprim (topoisomerase-primase) domain common to DnaG primases, topoisomerases, OLD family nucleases and RecR/M DNA repair proteins []. Both DnaG motifs IV and V are present in the alignment, the DxD (V) motif may be involved in Mg2+ binding and mutations to the conserved glutamate (IV) completely abolish DnaG type primase activity. DNA primase 2.7.7.6 from EC is a nucleotidyltransferase it synthesizes the oligoribonucleotide primers required for DNA replication on the lagging strand of the replication fork; it can also prime the leading stand and has been implicated in cell division []. This family also includes the atypical archaeal A subunit from type II DNA topoisomerases []. Type II DNA topoisomerases catalyse the relaxation of DNA supercoiling by causing transient double strand breaks.; PDB: 2ZJT_A 3IG0_A 3M4I_A 3NUH_B 1GKU_B 1GL9_C 3PWT_A 1CY4_A 1ECL_A 1CY7_A ....
Probab=81.49 E-value=6.1 Score=26.41 Aligned_cols=67 Identities=16% Similarity=0.129 Sum_probs=45.3
Q ss_pred EEEeccHHHHHHHHHHHHhCCCeeEEecCCCCH------------HHHHHHHHHHhccCceEEEEEeecccHHHHHHHH
Q psy437 38 IVYCLTRKECDSVAAALAQERINAISYHAGLAD------------KLRNEVQMKWISNKVHVGHWTVVSKECDSVAAAL 104 (184)
Q Consensus 38 IIf~~tr~~~e~la~~L~~~gi~~~~~hg~l~~------------~~R~~~~~~f~~g~~~vlVaT~tr~~~e~~a~gL 104 (184)
|+.+-....+..+++.|...+..+....|-+-. ....+.+.+...+--.|++|||.-.+=|.+|..+
T Consensus 2 liIvE~ps~a~~i~~~l~~~~~~v~~~~Ghl~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~iiiatD~D~EGe~Ia~~i 80 (100)
T PF01751_consen 2 LIIVEKPSDAKAIAKALGGEEYIVIATSGHLLELAKPEDYDPKDKKKQIKNLKKLLKKADEIIIATDPDREGELIAWEI 80 (100)
T ss_dssp EEEESSHHHHHHHHHHSSTTTEEEEEESSSSEESTTSSHHHCHTTHHHHHHHHHHHHSCSEEEEEC-SSHHHHHHHHHH
T ss_pred EEEEeCHHHHHHHHHHcCCCCEEEEEeCCcccccccccccccccccccchhhHHHhhhccEeeecCCCChHHHHHHHHH
Confidence 677888888888888887444566666664432 1235556666566678999999887777777655
No 290
>cd01527 RHOD_YgaP Member of the Rhodanese Homology Domain superfamily. This CD includes Escherichia coli YgaP, and similar uncharacterized putative rhodanese-related sulfurtransferases.
Probab=81.40 E-value=2.7 Score=27.73 Aligned_cols=37 Identities=22% Similarity=0.222 Sum_probs=29.6
Q ss_pred CCCcEEEEeccHHHHHHHHHHHHhCCC-eeEEecCCCC
Q psy437 33 SGQSGIVYCLTRKECDSVAAALAQERI-NAISYHAGLA 69 (184)
Q Consensus 33 ~~~~~IIf~~tr~~~e~la~~L~~~gi-~~~~~hg~l~ 69 (184)
+..+.++||++-..+...+..|.+.|+ ++..+.||++
T Consensus 53 ~~~~iv~~c~~g~~s~~~~~~L~~~g~~~v~~l~gG~~ 90 (99)
T cd01527 53 GANAIIFHCRSGMRTQQNAERLAAISAGEAYVLEGGLD 90 (99)
T ss_pred CCCcEEEEeCCCchHHHHHHHHHHcCCccEEEeeCCHH
Confidence 345788899998778888999998888 4767899864
No 291
>COG1856 Uncharacterized homolog of biotin synthetase [Function unknown]
Probab=81.30 E-value=5.7 Score=31.28 Aligned_cols=65 Identities=11% Similarity=0.052 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHhCCCeeEEecCCCCHH-----HH-HHHHHHHhccCceEEEEEeecccHHHHHHHHHhcCCc
Q psy437 45 KECDSVAAALAQERINAISYHAGLADK-----LR-NEVQMKWISNKVHVGHWTVVSKECDSVAAALAQERIN 110 (184)
Q Consensus 45 ~~~e~la~~L~~~gi~~~~~hg~l~~~-----~R-~~~~~~f~~g~~~vlVaT~tr~~~e~~a~gL~~~gi~ 110 (184)
+....-...|.+.|+.-..+.|||++. .| ...+..++....-.+.|--.+.+ |..++.|...+++
T Consensus 42 ~~l~k~~~el~kkGy~g~llSGGm~srg~VPl~kf~d~lK~lke~~~l~inaHvGfvd-E~~~eklk~~~vd 112 (275)
T COG1856 42 KSLLKRCMELEKKGYEGCLLSGGMDSRGKVPLWKFKDELKALKERTGLLINAHVGFVD-ESDLEKLKEELVD 112 (275)
T ss_pred HHHHHHHHHHHhcCceeEEEeCCcCCCCCccHHHHHHHHHHHHHhhCeEEEEEeeecc-HHHHHHHHHhcCc
Confidence 333344456777899999999999852 22 23344444333334555555555 6777777777776
No 292
>cd01519 RHOD_HSP67B2 Member of the Rhodanese Homology Domain superfamily. This CD includes the heat shock protein 67B2 of Drosophila melanogaster and other similar proteins, many of which are uncharacterized.
Probab=80.97 E-value=2.2 Score=28.45 Aligned_cols=36 Identities=14% Similarity=0.159 Sum_probs=29.7
Q ss_pred CCcEEEEeccHHHHHHHHHHHHhCCCe-eEEecCCCC
Q psy437 34 GQSGIVYCLTRKECDSVAAALAQERIN-AISYHAGLA 69 (184)
Q Consensus 34 ~~~~IIf~~tr~~~e~la~~L~~~gi~-~~~~hg~l~ 69 (184)
..+.|+||.+-..+...+..|...|+. +..+.||+.
T Consensus 66 ~~~ivv~c~~g~~s~~~~~~l~~~G~~~v~~~~Gg~~ 102 (106)
T cd01519 66 DKELIFYCKAGVRSKAAAELARSLGYENVGNYPGSWL 102 (106)
T ss_pred CCeEEEECCCcHHHHHHHHHHHHcCCccceecCCcHH
Confidence 457888999988888899999999985 677888864
No 293
>cd01533 4RHOD_Repeat_2 Member of the Rhodanese Homology Domain superfamily, repeat 2. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 2nd repeat which does contain the putative catalytic Cys residue.
Probab=80.83 E-value=2.3 Score=28.76 Aligned_cols=37 Identities=16% Similarity=0.179 Sum_probs=29.7
Q ss_pred CCcEEEEeccHHHHHHHHHHHHhCCCe--eEEecCCCCH
Q psy437 34 GQSGIVYCLTRKECDSVAAALAQERIN--AISYHAGLAD 70 (184)
Q Consensus 34 ~~~~IIf~~tr~~~e~la~~L~~~gi~--~~~~hg~l~~ 70 (184)
..+.++||.+-..+...+..|...|+. +..+.||++.
T Consensus 66 ~~~ivv~C~~G~rs~~a~~~L~~~G~~~~v~~l~gG~~~ 104 (109)
T cd01533 66 RTPIVVNCAGRTRSIIGAQSLINAGLPNPVAALRNGTQG 104 (109)
T ss_pred CCeEEEECCCCchHHHHHHHHHHCCCCcceeEecCCHHH
Confidence 457888998877777788999999994 7778999753
No 294
>KOG0923|consensus
Probab=80.61 E-value=5.1 Score=36.43 Aligned_cols=145 Identities=9% Similarity=0.075 Sum_probs=87.2
Q ss_pred EEEEEEccC------hHHHHHHHHHhhc--CCCcEEEEeccHHHHHHHHHHHHhC--------CCeeEEecCCCCHHH-H
Q psy437 11 KYEILPKKN------VLKEVISLIKAKY--SGQSGIVYCLTRKECDSVAAALAQE--------RINAISYHAGLADKL-R 73 (184)
Q Consensus 11 ~y~v~~~~~------k~~~L~~~l~~~~--~~~~~IIf~~tr~~~e~la~~L~~~--------gi~~~~~hg~l~~~~-R 73 (184)
.|+|.-.+. ..+.|..++++.. .+.--++..+-.-+|+.....|... .+++..++-.-+..+ -
T Consensus 378 sYSViiiDEAHERTL~TDILfgLvKDIar~RpdLKllIsSAT~DAekFS~fFDdapIF~iPGRRyPVdi~Yt~~PEAdYl 457 (902)
T KOG0923|consen 378 SYSVIIVDEAHERTLHTDILFGLVKDIARFRPDLKLLISSATMDAEKFSAFFDDAPIFRIPGRRYPVDIFYTKAPEADYL 457 (902)
T ss_pred ceeEEEeehhhhhhhhhhHHHHHHHHHHhhCCcceEEeeccccCHHHHHHhccCCcEEeccCcccceeeecccCCchhHH
Confidence 377765432 4455666665432 2222334444445688888888653 345655554433221 1
Q ss_pred HHHHHHHh-----ccCceEEEEEeecccHHHHHHHH-------Hh--cCCcEEEeeCCCChHHHHHHHHHhhCCCceEEE
Q psy437 74 NEVQMKWI-----SNKVHVGHWTVVSKECDSVAAAL-------AQ--ERINAISYHAGLADKLRNEVQMKWISNKVHLYN 139 (184)
Q Consensus 74 ~~~~~~f~-----~g~~~vlVaT~tr~~~e~~a~gL-------~~--~gi~~~vih~~~p~~~r~~~~~~f~~~~~~v~v 139 (184)
..++.... +--..|||+-....+.|.+..-| .. +.+-++-||+++|++...-+-+--..|.-.|++
T Consensus 458 dAai~tVlqIH~tqp~GDILVFltGQeEIEt~~e~l~~~~~~LGski~eliv~PiYaNLPselQakIFePtP~gaRKVVL 537 (902)
T KOG0923|consen 458 DAAIVTVLQIHLTQPLGDILVFLTGQEEIETVKENLKERCRRLGSKIRELIVLPIYANLPSELQAKIFEPTPPGARKVVL 537 (902)
T ss_pred HHHHhhheeeEeccCCccEEEEeccHHHHHHHHHHHHHHHHHhccccceEEEeeccccCChHHHHhhcCCCCCCceeEEE
Confidence 11222211 11246888888777665555444 22 234358899999999988888777888889999
Q ss_pred E-------EecCCccEEEecCCC
Q psy437 140 V-------WKIQWKRIIWIHSLV 155 (184)
Q Consensus 140 a-------~D~~~vr~v~~~~~p 155 (184)
| +-|++|.+||.-...
T Consensus 538 ATNIAETSlTIdgI~yViDpGf~ 560 (902)
T KOG0923|consen 538 ATNIAETSLTIDGIKYVIDPGFV 560 (902)
T ss_pred eecchhhceeecCeEEEecCccc
Confidence 9 589999999865443
No 295
>cd06309 PBP1_YtfQ_like Periplasmic binding domain of ABC-type YtfQ-like transport systems. Periplasmic binding domain of ABC-type YtfQ-like transport systems. The YtfQ protein from Escherichia coli is up-regulated under glucose-limited conditions and shares homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Members of this group are predicted to be involved in the transport of sugar-containing molecules across cellular and organellar membranes; however their ligand specificity is not determined experimentally.
Probab=80.29 E-value=25 Score=27.30 Aligned_cols=74 Identities=18% Similarity=0.115 Sum_probs=46.4
Q ss_pred HHHHHHHHHHhCCCeeEEecCCCCHHHHHHHHHHHhccCceEEEEEeeccc-HHHHHHHHHhcCCcEEEeeCCCC
Q psy437 46 ECDSVAAALAQERINAISYHAGLADKLRNEVQMKWISNKVHVGHWTVVSKE-CDSVAAALAQERINAISYHAGLA 119 (184)
Q Consensus 46 ~~e~la~~L~~~gi~~~~~hg~l~~~~R~~~~~~f~~g~~~vlVaT~tr~~-~e~~a~gL~~~gi~~~vih~~~p 119 (184)
..+.+.+.+++.|+.+..+.+.-+.+...+.++.+....+..||..+...+ ++.....+...++++..++.+++
T Consensus 17 ~~~~~~~~a~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~~~i~~~~~~~iPvV~~~~~~~ 91 (273)
T cd06309 17 ETKSIKDAAEKRGFDLKFADAQQKQENQISAIRSFIAQGVDVIILAPVVETGWDPVLKEAKAAGIPVILVDRGVD 91 (273)
T ss_pred HHHHHHHHHHhcCCEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEcCCccccchHHHHHHHHCCCCEEEEecCcC
Confidence 344555666677888877765545555556777777777777766654433 23444556777888666765543
No 296
>PRK12326 preprotein translocase subunit SecA; Reviewed
Probab=80.24 E-value=5.8 Score=36.47 Aligned_cols=89 Identities=16% Similarity=-0.020 Sum_probs=70.4
Q ss_pred cCceEEEEEeecccHHHHHHHHHhcCCcEEEeeCCCChHHHHHHHHHhhCCCceEEEE-----EecCC----------c-
Q psy437 83 NKVHVGHWTVVSKECDSVAAALAQERINAISYHAGLADKLRNEVQMKWISNKVHLYNV-----WKIQW----------K- 146 (184)
Q Consensus 83 g~~~vlVaT~tr~~~e~~a~gL~~~gi~~~vih~~~p~~~r~~~~~~f~~~~~~v~va-----~D~~~----------v- 146 (184)
..-+|||.|.+-.+.|.++..|...||+..|+|+.-....-.-+.+..+.|.+.|-.- -||.- |
T Consensus 426 ~GrPVLVgt~sI~~SE~ls~~L~~~gI~h~vLNAk~~~~EA~IIa~AG~~gaVTIATNMAGRGTDIkLg~~~~~~~~~V~ 505 (764)
T PRK12326 426 TGQPVLVGTHDVAESEELAERLRAAGVPAVVLNAKNDAEEARIIAEAGKYGAVTVSTQMAGRGTDIRLGGSDEADRDRVA 505 (764)
T ss_pred cCCCEEEEeCCHHHHHHHHHHHHhCCCcceeeccCchHhHHHHHHhcCCCCcEEEEecCCCCccCeecCCCcccchHHHH
Confidence 4457999999999999999999999999999999877777777778888887666554 25542 2
Q ss_pred ----cEEEecCCCCCccccccccccccCCcc
Q psy437 147 ----RIIWIHSLVLIKPDYLPPILDLRLGRE 173 (184)
Q Consensus 147 ----r~v~~~~~p~~~e~y~~~i~~~~~~r~ 173 (184)
=+||-...|.|. -+.+.|++|+||-
T Consensus 506 ~~GGLhVIgTerheSr--RID~QLrGRaGRQ 534 (764)
T PRK12326 506 ELGGLHVIGTGRHRSE--RLDNQLRGRAGRQ 534 (764)
T ss_pred HcCCcEEEeccCCchH--HHHHHHhcccccC
Confidence 377877777765 6777888999996
No 297
>cd06324 PBP1_ABC_sugar_binding_like_13 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. This group includes the periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=79.71 E-value=26 Score=28.04 Aligned_cols=72 Identities=13% Similarity=-0.014 Sum_probs=40.2
Q ss_pred HHHHHHHHhCCCeeEEecCCCCHHHHHHHHHHHhcc--CceEEEEEeecccHHHHHHHHHhcCCcEEEeeCCCC
Q psy437 48 DSVAAALAQERINAISYHAGLADKLRNEVQMKWISN--KVHVGHWTVVSKECDSVAAALAQERINAISYHAGLA 119 (184)
Q Consensus 48 e~la~~L~~~gi~~~~~hg~l~~~~R~~~~~~f~~g--~~~vlVaT~tr~~~e~~a~gL~~~gi~~~vih~~~p 119 (184)
..+.+.+.+.|+.+....++-+.+.-...++.+.+. .+..||.++.....+.....+...|+++.+++...+
T Consensus 20 ~gi~~~~~~~g~~v~~~~~~~~~~~~~~~i~~~~~~~~~vdgiIi~~~~~~~~~~~~~~~~~giPvV~~~~~~~ 93 (305)
T cd06324 20 RFMQAAADDLGIELEVLYAERDRFLMLQQARTILQRPDKPDALIFTNEKSVAPELLRLAEGAGVKLFLVNSGLT 93 (305)
T ss_pred HHHHHHHHhcCCeEEEEeCCCCHHHHHHHHHHHHHhccCCCEEEEcCCccchHHHHHHHHhCCCeEEEEecCCC
Confidence 334445555677766655554554445566667766 676666554322233444555667777555655443
No 298
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=79.63 E-value=12 Score=23.07 Aligned_cols=52 Identities=15% Similarity=0.082 Sum_probs=35.3
Q ss_pred EEEe-ccHHHHHHHHHHHHhCCCeeEEecCCCCHHHHHHHHHHHhcc-CceEEE
Q psy437 38 IVYC-LTRKECDSVAAALAQERINAISYHAGLADKLRNEVQMKWISN-KVHVGH 89 (184)
Q Consensus 38 IIf~-~tr~~~e~la~~L~~~gi~~~~~hg~l~~~~R~~~~~~f~~g-~~~vlV 89 (184)
.+|+ +++..|..+...|++.|++...+.-..+.+.+.+..+..-.. .++.|+
T Consensus 3 ~ly~~~~Cp~C~~ak~~L~~~~i~~~~i~i~~~~~~~~~~~~~~~~~~~vP~v~ 56 (75)
T cd03418 3 EIYTKPNCPYCVRAKALLDKKGVDYEEIDVDGDPALREEMINRSGGRRTVPQIF 56 (75)
T ss_pred EEEeCCCChHHHHHHHHHHHCCCcEEEEECCCCHHHHHHHHHHhCCCCccCEEE
Confidence 4554 677889999999999999988887776655555544443322 455443
No 299
>TIGR02417 fruct_sucro_rep D-fructose-responsive transcription factor. Members of this family belong the lacI helix-turn-helix family (pfam00356) of DNA-binding transcriptional regulators. All members are from the proteobacteria. Characterized members act as positive and negative transcriptional regulators of fructose and sucrose transport and metabolism. Sucrose is a disaccharide composed of fructose and glucose; D-fructose-1-phosphate rather than an intact sucrose moiety has been shown to act as the inducer.
Probab=79.63 E-value=23 Score=28.42 Aligned_cols=72 Identities=8% Similarity=0.028 Sum_probs=40.7
Q ss_pred HHHHHHHHHhCCCeeEEecCCCCHHHHHHHHHHHhccCceEEEEEeecccHHHHHHHHHhcCCcEEEeeCCC
Q psy437 47 CDSVAAALAQERINAISYHAGLADKLRNEVQMKWISNKVHVGHWTVVSKECDSVAAALAQERINAISYHAGL 118 (184)
Q Consensus 47 ~e~la~~L~~~gi~~~~~hg~l~~~~R~~~~~~f~~g~~~vlVaT~tr~~~e~~a~gL~~~gi~~~vih~~~ 118 (184)
...+.+.+.+.|+.+..+..+-+.+.....++.+....+..||.++.....+.....|...+++++++....
T Consensus 79 ~~~i~~~~~~~gy~~~i~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~~~~~~~l~~~~iPvV~~~~~~ 150 (327)
T TIGR02417 79 AKELEQQCREAGYQLLIACSDDNPDQEKVVIENLLARQVDALIVASCMPPEDAYYQKLQNEGLPVVALDRSL 150 (327)
T ss_pred HHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHHcCCCEEEEeCCCCCChHHHHHHHhcCCCEEEEcccc
Confidence 444555556678877666555454444556666776677766655533212233345666677755555443
No 300
>PF13307 Helicase_C_2: Helicase C-terminal domain; PDB: 4A15_A 2VSF_A 3CRV_A 3CRW_1 2VL7_A.
Probab=79.35 E-value=8.7 Score=28.29 Aligned_cols=75 Identities=15% Similarity=0.087 Sum_probs=49.7
Q ss_pred hccCceEEEEEeecccHHHHHHHHHhc----CCcEEEeeCCCChHHHHHHHHHhhCCCceEEEE---------EecCC--
Q psy437 81 ISNKVHVGHWTVVSKECDSVAAALAQE----RINAISYHAGLADKLRNEVQMKWISNKVHLYNV---------WKIQW-- 145 (184)
Q Consensus 81 ~~g~~~vlVaT~tr~~~e~~a~gL~~~----gi~~~vih~~~p~~~r~~~~~~f~~~~~~v~va---------~D~~~-- 145 (184)
..-..++||.+++....+.+...+... ++. .... .......+.+.|+.+.-.|+++ +|.++
T Consensus 6 ~~~~g~~lv~f~Sy~~l~~~~~~~~~~~~~~~~~-v~~q---~~~~~~~~l~~~~~~~~~il~~v~~g~~~EGiD~~~~~ 81 (167)
T PF13307_consen 6 SAVPGGVLVFFPSYRRLEKVYERLKERLEEKGIP-VFVQ---GSKSRDELLEEFKRGEGAILLAVAGGSFSEGIDFPGDL 81 (167)
T ss_dssp HCCSSEEEEEESSHHHHHHHHTT-TSS-E-ETSC-EEES---TCCHHHHHHHHHCCSSSEEEEEETTSCCGSSS--ECES
T ss_pred hcCCCCEEEEeCCHHHHHHHHHHHHhhcccccce-eeec---CcchHHHHHHHHHhccCeEEEEEecccEEEeecCCCch
Confidence 344567999999999999999988765 454 4444 3556677778888887777776 37764
Q ss_pred ccEEEecCCCCCcc
Q psy437 146 KRIIWIHSLVLIKP 159 (184)
Q Consensus 146 vr~v~~~~~p~~~e 159 (184)
.+.|+...+|-...
T Consensus 82 ~r~vii~glPfp~~ 95 (167)
T PF13307_consen 82 LRAVIIVGLPFPPP 95 (167)
T ss_dssp EEEEEEES-----T
T ss_pred hheeeecCCCCCCC
Confidence 78999999997544
No 301
>cd06270 PBP1_GalS_like Ligand binding domain of DNA transcription iso-repressor GalS, which is one of two regulatory proteins involved in galactose transport and metabolism. Ligand binding domain of DNA transcription iso-repressor GalS, which is one of two regulatory proteins involved in galactose transport and metabolism. Transcription of the galactose regulon genes is regulated by Gal iso-repressor (GalS) and Gal repressor (GalR) in different ways, but both repressors recognize the same DNA binding site in the absence of D-galactose. GalS is a dimeric protein like GalR,and its major role is in regulating expression of the high-affinity galactose transporter encoded by the mgl operon, whereas GalR is the exclusive regulator of galactose permease, the low-affinity galactose transporter. GalS and GalR are members of the LacI-GalR family of transcription regulators and both contain the type I periplasmic binding protein-like fold. Hence, they are homologous to the periplasmic sugar bindi
Probab=79.32 E-value=27 Score=26.99 Aligned_cols=21 Identities=10% Similarity=0.017 Sum_probs=12.5
Q ss_pred EEeecccHHHHHHHHHhcCCc
Q psy437 90 WTVVSKECDSVAAALAQERIN 110 (184)
Q Consensus 90 aT~tr~~~e~~a~gL~~~gi~ 110 (184)
.++-......++..|-..|.+
T Consensus 97 ~~d~~~~~~~~~~~l~~~g~~ 117 (268)
T cd06270 97 WLDNEQGGYLATEHLIELGHR 117 (268)
T ss_pred EECcHHHHHHHHHHHHHCCCc
Confidence 344445566777777665655
No 302
>cd00158 RHOD Rhodanese Homology Domain (RHOD); an alpha beta fold domain found duplicated in the rhodanese protein. The cysteine containing enzymatically active version of the domain is also found in the Cdc25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and certain stress proteins such as senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions (no active site cysteine) are also seen in dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases, where they are believed to play a regulatory role in multidomain proteins.
Probab=79.02 E-value=4.5 Score=25.56 Aligned_cols=37 Identities=16% Similarity=0.296 Sum_probs=29.9
Q ss_pred CCCcEEEEeccHHHHHHHHHHHHhCCCe-eEEecCCCC
Q psy437 33 SGQSGIVYCLTRKECDSVAAALAQERIN-AISYHAGLA 69 (184)
Q Consensus 33 ~~~~~IIf~~tr~~~e~la~~L~~~gi~-~~~~hg~l~ 69 (184)
+..+.|+||.+...+..++..|...|+. +..+-||+.
T Consensus 49 ~~~~vv~~c~~~~~a~~~~~~l~~~G~~~v~~l~gG~~ 86 (89)
T cd00158 49 KDKPIVVYCRSGNRSARAAKLLRKAGGTNVYNLEGGML 86 (89)
T ss_pred CCCeEEEEeCCCchHHHHHHHHHHhCcccEEEecCChh
Confidence 4567888999988899999999999764 666778764
No 303
>cd01422 MGS Methylglyoxal synthase catalyzes the enolization of dihydroxyacetone phosphate (DHAP) to produce methylglyoxal. The first part of the catalytic mechanism is believed to be similar to TIM (triosephosphate isomerase) in that both enzymes utilize DHAP to form an ene-diolate phosphate intermediate. In MGS, the second catalytic step is characterized by the elimination of phosphate and collapse of the enediolate to form methylglyoxal instead of reprotonation to form the isomer glyceraldehyde 3-phosphate, as in TIM. This is the first reaction in the methylglyoxal bypass of the Embden-Myerhoff glycolytic pathway and is believed to provide physiological benefits under non-ideal growth conditions in bacteria.
Probab=78.92 E-value=10 Score=26.32 Aligned_cols=45 Identities=2% Similarity=-0.014 Sum_probs=32.3
Q ss_pred HHHHHHHh-CCCeeEEecCCCCHHHHHHHHHHHhccCceEEEEEeec
Q psy437 49 SVAAALAQ-ERINAISYHAGLADKLRNEVQMKWISNKVHVGHWTVVS 94 (184)
Q Consensus 49 ~la~~L~~-~gi~~~~~hg~l~~~~R~~~~~~f~~g~~~vlVaT~tr 94 (184)
..+++|++ .|+++..+..+ +.+.+..+.+.+++|+++.+|.|+.+
T Consensus 35 gTa~~L~~~~Gi~v~~vk~~-~~~g~~~i~~~i~~g~i~~VInt~~~ 80 (115)
T cd01422 35 TTGLLIQEATGLTVNRMKSG-PLGGDQQIGALIAEGEIDAVIFFRDP 80 (115)
T ss_pred hHHHHHHHhhCCcEEEEecC-CCCchhHHHHHHHcCceeEEEEcCCC
Confidence 34555666 79988766221 12345789999999999999999863
No 304
>PRK05234 mgsA methylglyoxal synthase; Validated
Probab=78.48 E-value=21 Score=25.85 Aligned_cols=78 Identities=9% Similarity=0.042 Sum_probs=44.8
Q ss_pred CCCeEEEEEEccC-hHHHHHHHHHhhcCCCcEEEEeccHHHHHHHHHHHHhC-CCeeEEecCCCCHHHHHHHHHHHhccC
Q psy437 7 RANLKYEILPKKN-VLKEVISLIKAKYSGQSGIVYCLTRKECDSVAAALAQE-RINAISYHAGLADKLRNEVQMKWISNK 84 (184)
Q Consensus 7 R~Nl~y~v~~~~~-k~~~L~~~l~~~~~~~~~IIf~~tr~~~e~la~~L~~~-gi~~~~~hg~l~~~~R~~~~~~f~~g~ 84 (184)
+-++++++..... .+..+...+.+...+ -.|+ .|. -.+++|++. |+++..+.++-. .-+..+.+.+++|+
T Consensus 4 ~~~v~lsv~d~dK~~l~~~a~~l~~ll~G-f~l~--AT~----gTa~~L~~~~Gi~v~~vi~~~~-gg~~~i~~~I~~g~ 75 (142)
T PRK05234 4 RKRIALIAHDHKKDDLVAWVKAHKDLLEQ-HELY--ATG----TTGGLIQEATGLDVTRLLSGPL-GGDQQIGALIAEGK 75 (142)
T ss_pred CcEEEEEEeccchHHHHHHHHHHHHHhcC-CEEE--EeC----hHHHHHHhccCCeeEEEEcCCC-CCchhHHHHHHcCc
Confidence 3456777765532 233333333332113 3343 233 445567777 998765432211 12467999999999
Q ss_pred ceEEEEEe
Q psy437 85 VHVGHWTV 92 (184)
Q Consensus 85 ~~vlVaT~ 92 (184)
+..+|.|+
T Consensus 76 i~lVInt~ 83 (142)
T PRK05234 76 IDMLIFFR 83 (142)
T ss_pred eeEEEEec
Confidence 99999997
No 305
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=78.30 E-value=19 Score=30.39 Aligned_cols=96 Identities=18% Similarity=0.098 Sum_probs=63.4
Q ss_pred HhccCceEEEEEeecccHHHHHHHHH--hcCCcEEEeeCCCChHHHHHHHHHhhCCCceEEEE-------EecCCccEEE
Q psy437 80 WISNKVHVGHWTVVSKECDSVAAALA--QERINAISYHAGLADKLRNEVQMKWISNKVHLYNV-------WKIQWKRIIW 150 (184)
Q Consensus 80 f~~g~~~vlVaT~tr~~~e~~a~gL~--~~gi~~~vih~~~p~~~r~~~~~~f~~~~~~v~va-------~D~~~vr~v~ 150 (184)
-++...+++|+.++-...|.+|..|. .+......+|..- ..|..--+.|+.|++.+++. .-.|+|...+
T Consensus 301 q~~~~~P~liF~p~I~~~eq~a~~lk~~~~~~~i~~Vhs~d--~~R~EkV~~fR~G~~~lLiTTTILERGVTfp~vdV~V 378 (441)
T COG4098 301 QRKTGRPVLIFFPEIETMEQVAAALKKKLPKETIASVHSED--QHRKEKVEAFRDGKITLLITTTILERGVTFPNVDVFV 378 (441)
T ss_pred HHhcCCcEEEEecchHHHHHHHHHHHhhCCccceeeeeccC--ccHHHHHHHHHcCceEEEEEeehhhcccccccceEEE
Confidence 33455689999999999999999883 3344334566553 34555566799999999998 3667776544
Q ss_pred -ecCC-CCCccccccccccccCCcc-cccccc
Q psy437 151 -IHSL-VLIKPDYLPPILDLRLGRE-DIREGE 179 (184)
Q Consensus 151 -~~~~-p~~~e~y~~~i~~~~~~r~-~~~~~~ 179 (184)
...- .-+..+.+|-. +|+||- +-|.|.
T Consensus 379 lgaeh~vfTesaLVQIa--GRvGRs~~~PtGd 408 (441)
T COG4098 379 LGAEHRVFTESALVQIA--GRVGRSLERPTGD 408 (441)
T ss_pred ecCCcccccHHHHHHHh--hhccCCCcCCCCc
Confidence 3322 23445555544 799996 555553
No 306
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]
Probab=78.14 E-value=14 Score=34.06 Aligned_cols=95 Identities=13% Similarity=0.126 Sum_probs=76.2
Q ss_pred HHhccCc--eEEEEEeecccHHHHHHHHHhcCCcEEEeeCCCChHHHHHHHHHhhCC-CceEEEE--------EecCCcc
Q psy437 79 KWISNKV--HVGHWTVVSKECDSVAAALAQERINAISYHAGLADKLRNEVQMKWISN-KVHLYNV--------WKIQWKR 147 (184)
Q Consensus 79 ~f~~g~~--~vlVaT~tr~~~e~~a~gL~~~gi~~~vih~~~p~~~r~~~~~~f~~~-~~~v~va--------~D~~~vr 147 (184)
....... ++++++.-....+.+...|...++...-++|.+|...|.-.-+.|.++ ...++.. ++-..-.
T Consensus 704 ~~~~~~~~~kvlifsq~t~~l~il~~~l~~~~~~~~~ldG~~~~~~r~~~i~~f~~~~~~~v~lls~kagg~glnLt~a~ 783 (866)
T COG0553 704 KLLEEGHYHKVLIFSQFTPVLDLLEDYLKALGIKYVRLDGSTPAKRRQELIDRFNADEEEKVFLLSLKAGGLGLNLTGAD 783 (866)
T ss_pred HHHhhcccccEEEEeCcHHHHHHHHHHHHhcCCcEEEEeCCCChhhHHHHHHHhhcCCCCceEEEEecccccceeecccc
Confidence 3333344 899999999999999999999998778999999999999999999986 3444443 4666779
Q ss_pred EEEecCCCCCccccccccccc-cCCcc
Q psy437 148 IIWIHSLVLIKPDYLPPILDL-RLGRE 173 (184)
Q Consensus 148 ~v~~~~~p~~~e~y~~~i~~~-~~~r~ 173 (184)
.|+++|....+..+.|.+-+. |.|+.
T Consensus 784 ~vi~~d~~wnp~~~~Qa~dRa~RigQ~ 810 (866)
T COG0553 784 TVILFDPWWNPAVELQAIDRAHRIGQK 810 (866)
T ss_pred eEEEeccccChHHHHHHHHHHHHhcCc
Confidence 999999999998888887654 66664
No 307
>cd01447 Polysulfide_ST Polysulfide-sulfurtransferase - Rhodanese Homology Domain. This domain is believed to serve as a polysulfide binding and transferase domain in anaerobic gram-negative bacteria, functioning in oxidative phosphorylation with polysulfide-sulfur as a terminal electron acceptor. The active site contains the same conserved cysteine that is the catalytic residue in other Rhodanese Homology Domain proteins.
Probab=78.14 E-value=2.1 Score=28.27 Aligned_cols=37 Identities=11% Similarity=0.256 Sum_probs=29.4
Q ss_pred CCCcEEEEeccHHHHHHHHHHHHhCCCe-eEEecCCCC
Q psy437 33 SGQSGIVYCLTRKECDSVAAALAQERIN-AISYHAGLA 69 (184)
Q Consensus 33 ~~~~~IIf~~tr~~~e~la~~L~~~gi~-~~~~hg~l~ 69 (184)
+..+.+|||.+-..+...+..|...|+. +..+-||+.
T Consensus 60 ~~~~ivv~c~~g~~s~~~~~~l~~~G~~~v~~l~Gg~~ 97 (103)
T cd01447 60 EDKPFVFYCASGWRSALAGKTLQDMGLKPVYNIEGGFK 97 (103)
T ss_pred CCCeEEEEcCCCCcHHHHHHHHHHcChHHhEeecCcHH
Confidence 4567888998866777888999999987 778888864
No 308
>cd01520 RHOD_YbbB Member of the Rhodanese Homology Domain superfamily. This CD includes several putative ATP /GTP binding proteins including E. coli YbbB.
Probab=77.74 E-value=3.2 Score=29.14 Aligned_cols=38 Identities=18% Similarity=0.245 Sum_probs=29.5
Q ss_pred CCCcEEEEec-cHHHHHHHHHHHHhCCCeeEEecCCCCH
Q psy437 33 SGQSGIVYCL-TRKECDSVAAALAQERINAISYHAGLAD 70 (184)
Q Consensus 33 ~~~~~IIf~~-tr~~~e~la~~L~~~gi~~~~~hg~l~~ 70 (184)
+..+.||||. +-..+...+..|+..|+++..+.||+..
T Consensus 85 ~~~~vvvyC~~~G~rs~~a~~~L~~~G~~v~~L~GG~~a 123 (128)
T cd01520 85 RDPKLLIYCARGGMRSQSLAWLLESLGIDVPLLEGGYKA 123 (128)
T ss_pred CCCeEEEEeCCCCccHHHHHHHHHHcCCceeEeCCcHHH
Confidence 4567889996 4455677778888889998889999754
No 309
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=77.70 E-value=14 Score=22.85 Aligned_cols=54 Identities=15% Similarity=0.211 Sum_probs=37.1
Q ss_pred EEEEe-ccHHHHHHHHHHHHhCCCeeEEecCCCCHHHHHHHHHHHhccCceEEEE
Q psy437 37 GIVYC-LTRKECDSVAAALAQERINAISYHAGLADKLRNEVQMKWISNKVHVGHW 90 (184)
Q Consensus 37 ~IIf~-~tr~~~e~la~~L~~~gi~~~~~hg~l~~~~R~~~~~~f~~g~~~vlVa 90 (184)
..+|+ ++...|..+...|.+.|++...+.=...+..+.++.+.--.+.+++++.
T Consensus 3 v~ly~~~~C~~C~ka~~~L~~~gi~~~~~di~~~~~~~~el~~~~g~~~vP~v~i 57 (73)
T cd03027 3 VTIYSRLGCEDCTAVRLFLREKGLPYVEINIDIFPERKAELEERTGSSVVPQIFF 57 (73)
T ss_pred EEEEecCCChhHHHHHHHHHHCCCceEEEECCCCHHHHHHHHHHhCCCCcCEEEE
Confidence 45564 5688899999999999999888766655555555555444455665543
No 310
>cd01525 RHOD_Kc Member of the Rhodanese Homology Domain superfamily. Included in this CD are the rhodanese-like domains found C-terminal of the serine/threonine protein kinases catalytic (S_TKc) domain and the Tre-2, BUB2p, Cdc16p (TBC) domain. The putative active site Cys residue is not present in this CD.
Probab=76.43 E-value=3.9 Score=27.21 Aligned_cols=36 Identities=17% Similarity=0.210 Sum_probs=29.4
Q ss_pred CCcEEEEeccHHHHHHHHHHHHhCCCe-eEEecCCCC
Q psy437 34 GQSGIVYCLTRKECDSVAAALAQERIN-AISYHAGLA 69 (184)
Q Consensus 34 ~~~~IIf~~tr~~~e~la~~L~~~gi~-~~~~hg~l~ 69 (184)
..+.++||.+-..+...+..|...|+. +..+.||+.
T Consensus 65 ~~~vv~~c~~g~~s~~~a~~L~~~G~~~v~~l~GG~~ 101 (105)
T cd01525 65 GKIIVIVSHSHKHAALFAAFLVKCGVPRVCILDGGIN 101 (105)
T ss_pred CCeEEEEeCCCccHHHHHHHHHHcCCCCEEEEeCcHH
Confidence 457888998877788888899999986 677889874
No 311
>KOG0387|consensus
Probab=76.39 E-value=19 Score=33.48 Aligned_cols=98 Identities=9% Similarity=0.114 Sum_probs=79.7
Q ss_pred HHHHHHhccCceEEEEEeecccHHHHHHHHH-hcCCcEEEeeCCCChHHHHHHHHHhhCCC-ceEEEE--------EecC
Q psy437 75 EVQMKWISNKVHVGHWTVVSKECDSVAAALA-QERINAISYHAGLADKLRNEVQMKWISNK-VHLYNV--------WKIQ 144 (184)
Q Consensus 75 ~~~~~f~~g~~~vlVaT~tr~~~e~~a~gL~-~~gi~~~vih~~~p~~~r~~~~~~f~~~~-~~v~va--------~D~~ 144 (184)
..+..|.+...++|.+|.++.+.+.+-..|. .+|++.+-+-|--|...|.-+-..|-.+. +.|.+. .+..
T Consensus 537 ~ll~~W~kqg~rvllFsqs~~mLdilE~fL~~~~~ysylRmDGtT~~~~R~~lVd~Fne~~s~~VFLLTTrvGGLGlNLT 616 (923)
T KOG0387|consen 537 KLLKDWKKQGDRVLLFSQSRQMLDILESFLRRAKGYSYLRMDGTTPAALRQKLVDRFNEDESIFVFLLTTRVGGLGLNLT 616 (923)
T ss_pred HHHHHHhhCCCEEEEehhHHHHHHHHHHHHHhcCCceEEEecCCCccchhhHHHHhhcCCCceEEEEEEecccccccccc
Confidence 4566777766699999999999999999998 79999888999999999999999998654 444443 3777
Q ss_pred CccEEEecCCCCCccccccccccc-cCCc
Q psy437 145 WKRIIWIHSLVLIKPDYLPPILDL-RLGR 172 (184)
Q Consensus 145 ~vr~v~~~~~p~~~e~y~~~i~~~-~~~r 172 (184)
.-.-||.||+-..+-.-.|-.-+. |.|-
T Consensus 617 gAnRVIIfDPdWNPStD~QAreRawRiGQ 645 (923)
T KOG0387|consen 617 GANRVIIFDPDWNPSTDNQARERAWRIGQ 645 (923)
T ss_pred cCceEEEECCCCCCccchHHHHHHHhhcC
Confidence 778899999988888887776553 6654
No 312
>PRK03170 dihydrodipicolinate synthase; Provisional
Probab=76.37 E-value=39 Score=27.22 Aligned_cols=93 Identities=9% Similarity=-0.006 Sum_probs=58.1
Q ss_pred HHHHHHHHhCCCeeEEecC------CCCHHHHHHHHHHHhc---cCceEEEEEee--cccHHHHHHHHHhcCCcEEEee-
Q psy437 48 DSVAAALAQERINAISYHA------GLADKLRNEVQMKWIS---NKVHVGHWTVV--SKECDSVAAALAQERINAISYH- 115 (184)
Q Consensus 48 e~la~~L~~~gi~~~~~hg------~l~~~~R~~~~~~f~~---g~~~vlVaT~t--r~~~e~~a~gL~~~gi~~~vih- 115 (184)
..+.++|...|++-.+..| .|+.+||.++++.+.. |++++++.+.+ -.++-..|+.....|+++.++-
T Consensus 25 ~~~i~~l~~~Gv~gi~~~Gs~GE~~~ls~~Er~~~~~~~~~~~~~~~~vi~gv~~~~~~~~i~~a~~a~~~G~d~v~~~p 104 (292)
T PRK03170 25 RKLVDYLIANGTDGLVVVGTTGESPTLTHEEHEELIRAVVEAVNGRVPVIAGTGSNSTAEAIELTKFAEKAGADGALVVT 104 (292)
T ss_pred HHHHHHHHHcCCCEEEECCcCCccccCCHHHHHHHHHHHHHHhCCCCcEEeecCCchHHHHHHHHHHHHHcCCCEEEECC
Confidence 3344444445555444444 3678999999887764 66777766653 4577777788888898865441
Q ss_pred --CCC--ChHHHHHHHHHhhCCCceEEEE
Q psy437 116 --AGL--ADKLRNEVQMKWISNKVHLYNV 140 (184)
Q Consensus 116 --~~~--p~~~r~~~~~~f~~~~~~v~va 140 (184)
+.. ++....|..+.-..-.+++++.
T Consensus 105 P~~~~~~~~~i~~~~~~ia~~~~~pv~lY 133 (292)
T PRK03170 105 PYYNKPTQEGLYQHFKAIAEATDLPIILY 133 (292)
T ss_pred CcCCCCCHHHHHHHHHHHHhcCCCCEEEE
Confidence 212 2455666666655555677664
No 313
>cd06301 PBP1_rhizopine_binding_like Periplasmic binding proteins specific to rhizopines. Periplasmic binding proteins specific to rhizopines, which are simple sugar-like compounds produced in the nodules induced by the symbiotic root nodule bacteria, such as Rhizobium and Sinorhizobium. Rhizopine-binding-like proteins from other bacteria are also included. Two inositol based rhizopine compounds are known to date: L-3-O-methly-scyllo-inosamine (3-O-MSI) and scyllo-inosamine. Bacterial strains that can metabolize rhizopine have a greater competitive advantage in nodulation and rhizopine synthesis is regulated by NifA/NtrA regulatory transcription activators which are maximally expressed at the onset of nitrogen fixation in bacteroids. The members of this group belong to the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily.
Probab=76.32 E-value=33 Score=26.47 Aligned_cols=70 Identities=9% Similarity=-0.039 Sum_probs=39.3
Q ss_pred HHHHHHHHh-CCCeeEEecCCCCHHHHHHHHHHHhccCceEEEEEeecc-cHHHHHHHHHhcCCcEEEeeCC
Q psy437 48 DSVAAALAQ-ERINAISYHAGLADKLRNEVQMKWISNKVHVGHWTVVSK-ECDSVAAALAQERINAISYHAG 117 (184)
Q Consensus 48 e~la~~L~~-~gi~~~~~hg~l~~~~R~~~~~~f~~g~~~vlVaT~tr~-~~e~~a~gL~~~gi~~~vih~~ 117 (184)
.-+.+.+++ .|+.+..+.+.-+.+.-...++.+.+..+..+|.++... ..+.+...+...++++..++..
T Consensus 19 ~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiii~~~~~~~~~~~~~~l~~~~iPvv~~~~~ 90 (272)
T cd06301 19 NAMKEHAKVLGGVELQFEDAKNDVATQLSQVENFIAQGVDAIIVVPVDTAATAPIVKAANAAGIPLVYVNRR 90 (272)
T ss_pred HHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEecCchhhhHHHHHHHHHCCCeEEEecCC
Confidence 334445555 677776666555555555566666666666665544332 2344455567777775445443
No 314
>PF00532 Peripla_BP_1: Periplasmic binding proteins and sugar binding domain of LacI family; InterPro: IPR001761 This family includes the periplasmic binding proteins, and the LacI family transcriptional regulators. The periplasmic binding proteins are the primary receptors for chemotaxis and transport of many sugar based solutes. The LacI family of proteins consist of transcriptional regulators related to the lac repressor. In this case, generally the sugar binding domain binds a sugar which changes the DNA binding activity of the repressor domain (lacI) [, ].; PDB: 1BAP_A 7ABP_A 6ABP_A 1ABF_A 5ABP_A 2WRZ_B 9ABP_A 1APB_A 1ABE_A 8ABP_A ....
Probab=76.28 E-value=24 Score=28.18 Aligned_cols=22 Identities=5% Similarity=-0.088 Sum_probs=13.8
Q ss_pred EEeecccHHHHHHHHHhcCCcE
Q psy437 90 WTVVSKECDSVAAALAQERINA 111 (184)
Q Consensus 90 aT~tr~~~e~~a~gL~~~gi~~ 111 (184)
.++-......+++.|-..|.+-
T Consensus 99 ~~D~~~a~~~a~~~Li~~Gh~~ 120 (279)
T PF00532_consen 99 YIDNYEAGYEATEYLIKKGHRR 120 (279)
T ss_dssp EEEHHHHHHHHHHHHHHTTCCS
T ss_pred EEcchHHHHHHHHHHHhcccCC
Confidence 3444455667777777777774
No 315
>smart00491 HELICc2 helicase superfamily c-terminal domain.
Probab=75.93 E-value=6.5 Score=28.36 Aligned_cols=45 Identities=9% Similarity=-0.059 Sum_probs=29.3
Q ss_pred HHHHHHHHHHhccCc---eEEEEEeecccHHHHHHHHHhcCCc-EEEeeCCCC
Q psy437 71 KLRNEVQMKWISNKV---HVGHWTVVSKECDSVAAALAQERIN-AISYHAGLA 119 (184)
Q Consensus 71 ~~R~~~~~~f~~g~~---~vlVaT~tr~~~e~~a~gL~~~gi~-~~vih~~~p 119 (184)
.+...++++|.+... .||+++.+= ..++|+|.+|-. ..|+=.++|
T Consensus 31 ~~~~~~l~~f~~~~~~~g~iL~~v~~G----~~~EGiD~~g~~~r~vii~glP 79 (142)
T smart00491 31 GETEELLEKYSAACEARGALLLAVARG----KVSEGIDFPDDLGRAVIIVGIP 79 (142)
T ss_pred chHHHHHHHHHHhcCCCCEEEEEEeCC----eeecceecCCCccEEEEEEecC
Confidence 345678888887443 588888731 157899988742 155556666
No 316
>PRK11303 DNA-binding transcriptional regulator FruR; Provisional
Probab=75.79 E-value=35 Score=27.35 Aligned_cols=68 Identities=6% Similarity=-0.048 Sum_probs=34.7
Q ss_pred HHHHHHHhCCCeeEEecCCCCHHHHHHHHHHHhccCceEEEEEeecccHHHHHHHHHhcCCcEEEeeC
Q psy437 49 SVAAALAQERINAISYHAGLADKLRNEVQMKWISNKVHVGHWTVVSKECDSVAAALAQERINAISYHA 116 (184)
Q Consensus 49 ~la~~L~~~gi~~~~~hg~l~~~~R~~~~~~f~~g~~~vlVaT~tr~~~e~~a~gL~~~gi~~~vih~ 116 (184)
.+.+.+.+.|+.+..+..+-+.+.-...++.+....+..||..+.....+.....+...+++++.+..
T Consensus 82 gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~~~~~~~l~~~~iPvV~v~~ 149 (328)
T PRK11303 82 YLERQARQRGYQLLIACSDDQPDNEMRCAEHLLQRQVDALIVSTSLPPEHPFYQRLQNDGLPIIALDR 149 (328)
T ss_pred HHHHHHHHcCCEEEEEeCCCCHHHHHHHHHHHHHcCCCEEEEcCCCCCChHHHHHHHhcCCCEEEECC
Confidence 34444455677766655444444444566666666666665544322112233445556666444443
No 317
>cd01391 Periplasmic_Binding_Protein_Type_1 Type 1 periplasmic binding fold superfamily. Type 1 periplasmic binding fold superfamily. This model and hierarchy represent the ligand binding domains of the LacI family of transcriptional regulators, periplasmic binding proteins of the ABC-type transport systems, the family C G-protein couples receptors (GPCRs), membrane bound guanylyl cyclases including the family of natriuretic peptide receptors (NPRs), and the N-terminal leucine/isoleucine/valine- binding protein (LIVBP)-like domains of the ionotropic glutamate receptors (iGluRs). In LacI-like transcriptional regulator and the bacterial periplasmic binding proteins the ligands are monosaccharides including lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars, with a few exceptions. Periplasmic sugar binding proteins are one of the components of ABC transporters and are involved in the active transport of water-soluble ligands. The LacI family of proteins con
Probab=75.77 E-value=31 Score=25.79 Aligned_cols=62 Identities=16% Similarity=-0.007 Sum_probs=32.7
Q ss_pred CCCeeEEecCCCCHHHHHHHHHHHhccCceEEEEEeecccHHHHHHHHHhcCCcEEEeeCCC
Q psy437 57 ERINAISYHAGLADKLRNEVQMKWISNKVHVGHWTVVSKECDSVAAALAQERINAISYHAGL 118 (184)
Q Consensus 57 ~gi~~~~~hg~l~~~~R~~~~~~f~~g~~~vlVaT~tr~~~e~~a~gL~~~gi~~~vih~~~ 118 (184)
.++....+.+.-+...-....+.+....+..++.+........+...+...++++..++...
T Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~~~~~~~~~~~~~~~~~~ip~v~~~~~~ 92 (269)
T cd01391 31 RGLEVILADSQSDPERALEALRDLIQQGVDGIIGPPSSSSALAVVELAAAAGIPVVSLDATA 92 (269)
T ss_pred CceEEEEecCCCCHHHHHHHHHHHHHcCCCEEEecCCCHHHHHHHHHHHHcCCcEEEecCCC
Confidence 45555555555554444555555555555555555544433334555566666644444443
No 318
>PRK00162 glpE thiosulfate sulfurtransferase; Validated
Probab=75.57 E-value=8.4 Score=25.87 Aligned_cols=47 Identities=15% Similarity=0.250 Sum_probs=33.1
Q ss_pred HHHHHHHhhcCCCcEEEEeccHHHHHHHHHHHHhCCCe-eEEecCCCC
Q psy437 23 EVISLIKAKYSGQSGIVYCLTRKECDSVAAALAQERIN-AISYHAGLA 69 (184)
Q Consensus 23 ~L~~~l~~~~~~~~~IIf~~tr~~~e~la~~L~~~gi~-~~~~hg~l~ 69 (184)
.+...+.......+.++||.+-..+...+..|...|+. +..+.||+.
T Consensus 47 ~l~~~~~~~~~~~~ivv~c~~g~~s~~a~~~L~~~G~~~v~~l~GG~~ 94 (108)
T PRK00162 47 SLGAFMRQADFDTPVMVMCYHGNSSQGAAQYLLQQGFDVVYSIDGGFE 94 (108)
T ss_pred HHHHHHHhcCCCCCEEEEeCCCCCHHHHHHHHHHCCchheEEecCCHH
Confidence 34444433224556788998877788888899999986 667888874
No 319
>cd01545 PBP1_SalR Ligand-binding domain of DNA transcription repressor SalR, a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor SalR, a member of the LacI-GalR family of bacterial transcription regulators. The SalR binds to glucose based compound Salicin which is chemically related to aspirin. The ligand-binding of SalR is structurally homologous to the periplasmic sugar-binding domain of ABC-transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand bind
Probab=75.57 E-value=34 Score=26.26 Aligned_cols=28 Identities=4% Similarity=-0.190 Sum_probs=15.6
Q ss_pred EEEeecccHHHHHHHHHhcCCcE-EEeeC
Q psy437 89 HWTVVSKECDSVAAALAQERINA-ISYHA 116 (184)
Q Consensus 89 VaT~tr~~~e~~a~gL~~~gi~~-~vih~ 116 (184)
|+++.......++..|-..|.+. .++.+
T Consensus 98 V~~d~~~~g~~a~~~l~~~g~~~i~~i~~ 126 (270)
T cd01545 98 VRIDDRAAAREMTRHLIDLGHRRIAFIAG 126 (270)
T ss_pred EEeccHHHHHHHHHHHHHCCCceEEEEeC
Confidence 33444455667777776666553 33443
No 320
>cd06312 PBP1_ABC_sugar_binding_like_4 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=75.04 E-value=37 Score=26.34 Aligned_cols=71 Identities=14% Similarity=0.011 Sum_probs=43.3
Q ss_pred HHHHHHHHhCCCeeEEecCCC-CHHHHHHHHHHHhccCceEEEEEeeccc-HHHHHHHHHhcCCcEEEeeCCC
Q psy437 48 DSVAAALAQERINAISYHAGL-ADKLRNEVQMKWISNKVHVGHWTVVSKE-CDSVAAALAQERINAISYHAGL 118 (184)
Q Consensus 48 e~la~~L~~~gi~~~~~hg~l-~~~~R~~~~~~f~~g~~~vlVaT~tr~~-~e~~a~gL~~~gi~~~vih~~~ 118 (184)
+.+.+.+.+.|+.+..+..+- +.+.....++.+.+..+..+|.++...+ +......+...|+++..++...
T Consensus 20 ~g~~~~~~~~g~~v~~~~~~~~~~~~~~~~i~~l~~~~vdgiii~~~~~~~~~~~l~~~~~~~ipvV~~~~~~ 92 (271)
T cd06312 20 NGAEDAAKDLGVDVEYRGPETFDVADMARLIEAAIAAKPDGIVVTIPDPDALDPAIKRAVAAGIPVISFNAGD 92 (271)
T ss_pred HHHHHHHHHhCCEEEEECCCCCCHHHHHHHHHHHHHhCCCEEEEeCCChHHhHHHHHHHHHCCCeEEEeCCCC
Confidence 344445555688877766554 5555566777777777777776664432 2333455566788866676544
No 321
>cd01537 PBP1_Repressors_Sugar_Binding_like Ligand-binding domain of the LacI-GalR family of transcription regulators and the sugar-binding domain of ABC-type transport systems. Ligand-binding domain of the LacI-GalR family of transcription regulators and the sugar-binding domain of ABC-type transport systems, all of which contain the type I periplasmic binding protein-like fold. Their specific ligands include lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. The LacI family of proteins consists of transcriptional regulators related to the lac repressor; in general the sugar binding domain in this family binds a sugar, which in turn changes the DNA binding activity of the repressor domain. The core structure of the periplasmic binding proteins is classified into two types and they differ in number and order of beta strands in each domain: type I, which has six beta strands, and type II, which has five beta strands. These two distinct structural arrangem
Probab=74.73 E-value=34 Score=25.83 Aligned_cols=12 Identities=17% Similarity=0.036 Sum_probs=5.3
Q ss_pred HHHHHHHHHhcC
Q psy437 97 CDSVAAALAQER 108 (184)
Q Consensus 97 ~e~~a~gL~~~g 108 (184)
...++..|...|
T Consensus 106 ~~~~~~~l~~~g 117 (264)
T cd01537 106 GYLAGEHLAEKG 117 (264)
T ss_pred HHHHHHHHHHhc
Confidence 344444444444
No 322
>PF02142 MGS: MGS-like domain This is a subfamily of this family; InterPro: IPR011607 This domain composes the whole protein of methylglyoxal synthetase and the domain is also found in carbamoyl phosphate synthetase (CPS) where it forms a regulatory domain that binds to the allosteric effector ornithine. The known structures in this domain show a common phosphate binding site []. ; PDB: 4A1O_A 3ZZM_A 1ZCZ_A 1M6V_C 1CS0_C 1C30_E 1C3O_G 1BXR_A 1T36_E 1A9X_A ....
Probab=74.69 E-value=4.3 Score=26.93 Aligned_cols=49 Identities=14% Similarity=0.038 Sum_probs=30.2
Q ss_pred HHHHHHHHhCCCeeEE----ecCCCCHHHHHHHHHHHhccCceEEEEEeeccc
Q psy437 48 DSVAAALAQERINAIS----YHAGLADKLRNEVQMKWISNKVHVGHWTVVSKE 96 (184)
Q Consensus 48 e~la~~L~~~gi~~~~----~hg~l~~~~R~~~~~~f~~g~~~vlVaT~tr~~ 96 (184)
+-.++.|++.|+++.. .+.+-...-+..+++.+++|++..+|.|+....
T Consensus 20 ~gTa~~L~~~Gi~~~~v~~~~~~~~~~~g~~~i~~~i~~~~IdlVIn~~~~~~ 72 (95)
T PF02142_consen 20 EGTAKFLKEHGIEVTEVVNKIGEGESPDGRVQIMDLIKNGKIDLVINTPYPFS 72 (95)
T ss_dssp HHHHHHHHHTT--EEECCEEHSTG-GGTHCHHHHHHHHTTSEEEEEEE--THH
T ss_pred hHHHHHHHHcCCCceeeeeecccCccCCchhHHHHHHHcCCeEEEEEeCCCCc
Confidence 4556778888998332 333312233457999999999999999997643
No 323
>PRK14873 primosome assembly protein PriA; Provisional
Probab=74.63 E-value=59 Score=29.81 Aligned_cols=79 Identities=11% Similarity=0.022 Sum_probs=59.6
Q ss_pred HHHHHHhccCceEEEEEeecccHHHHHHHHHhc-C-CcEEEeeCCCChHHHHHHHHHhhCCCceEEEE-----E-ecCCc
Q psy437 75 EVQMKWISNKVHVGHWTVVSKECDSVAAALAQE-R-INAISYHAGLADKLRNEVQMKWISNKVHLYNV-----W-KIQWK 146 (184)
Q Consensus 75 ~~~~~f~~g~~~vlVaT~tr~~~e~~a~gL~~~-g-i~~~vih~~~p~~~r~~~~~~f~~~~~~v~va-----~-D~~~v 146 (184)
.+.+......-++||-.+.-..+..+...|... | -++.++|.+++...|...-....+|+..|++. | =.+|+
T Consensus 179 ~~i~~~l~~Gk~vLvLvPEi~lt~q~~~rl~~~f~~~~v~~lhS~l~~~~R~~~w~~~~~G~~~IViGtRSAvFaP~~~L 258 (665)
T PRK14873 179 AAAAATLRAGRGALVVVPDQRDVDRLEAALRALLGAGDVAVLSAGLGPADRYRRWLAVLRGQARVVVGTRSAVFAPVEDL 258 (665)
T ss_pred HHHHHHHHcCCeEEEEecchhhHHHHHHHHHHHcCCCcEEEECCCCCHHHHHHHHHHHhCCCCcEEEEcceeEEeccCCC
Confidence 344444444446999999888888888888532 3 56789999999999998888889999999987 3 55666
Q ss_pred cEEEecC
Q psy437 147 RIIWIHS 153 (184)
Q Consensus 147 r~v~~~~ 153 (184)
..||-.+
T Consensus 259 gLIIvdE 265 (665)
T PRK14873 259 GLVAIWD 265 (665)
T ss_pred CEEEEEc
Confidence 6666544
No 324
>cd00952 CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (HBPHA) and trans-2'-carboxybenzalpyruvate hydratase-aldolase (CBPHA). HBPHA catalyzes HBP to salicyaldehyde and pyruvate. This reaction is part of the degradative pathways for naphthalene and naphthalenesulfonates by bacteria. CBPHA is homologous to HBPHA and catalyzes the cleavage of CBP to 2-carboxylbenzaldehyde and pyruvate during the degradation of phenanthrene. They are member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=74.48 E-value=46 Score=27.20 Aligned_cols=93 Identities=9% Similarity=-0.061 Sum_probs=58.8
Q ss_pred HHHHHHHHhCCCeeEEecC------CCCHHHHHHHHHHHh---ccCceEEEEEee--cccHHHHHHHHHhcCCcEEEee-
Q psy437 48 DSVAAALAQERINAISYHA------GLADKLRNEVQMKWI---SNKVHVGHWTVV--SKECDSVAAALAQERINAISYH- 115 (184)
Q Consensus 48 e~la~~L~~~gi~~~~~hg------~l~~~~R~~~~~~f~---~g~~~vlVaT~t--r~~~e~~a~gL~~~gi~~~vih- 115 (184)
+.+.++|...|+.-.+.-| .|+.+||.++++... .|+++||+.+.+ -.++-.+|+.-...|++++.+.
T Consensus 32 ~~lv~~li~~Gv~Gi~v~GstGE~~~Lt~eEr~~v~~~~~~~~~grvpvi~Gv~~~~t~~ai~~a~~A~~~Gad~vlv~~ 111 (309)
T cd00952 32 ARLVERLIAAGVDGILTMGTFGECATLTWEEKQAFVATVVETVAGRVPVFVGATTLNTRDTIARTRALLDLGADGTMLGR 111 (309)
T ss_pred HHHHHHHHHcCCCEEEECcccccchhCCHHHHHHHHHHHHHHhCCCCCEEEEeccCCHHHHHHHHHHHHHhCCCEEEECC
Confidence 4444555555665555444 378899999988765 478888887764 3566666777778888854433
Q ss_pred --CCCC--hHHHHHHHHHhhCC-CceEEEE
Q psy437 116 --AGLA--DKLRNEVQMKWISN-KVHLYNV 140 (184)
Q Consensus 116 --~~~p--~~~r~~~~~~f~~~-~~~v~va 140 (184)
|-.| +...+|....-... .++|++.
T Consensus 112 P~y~~~~~~~l~~yf~~va~a~~~lPv~iY 141 (309)
T cd00952 112 PMWLPLDVDTAVQFYRDVAEAVPEMAIAIY 141 (309)
T ss_pred CcCCCCCHHHHHHHHHHHHHhCCCCcEEEE
Confidence 2223 44555665555444 5788876
No 325
>cd01538 PBP1_ABC_xylose_binding Periplasmic xylose-binding component of the ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily. Periplasmic xylose-binding component of the ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes a transition from an open to a closed conformational state upon ligand binding. Moreover, the periplasmic xylose-binding protein is homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR.
Probab=74.41 E-value=41 Score=26.53 Aligned_cols=72 Identities=21% Similarity=0.099 Sum_probs=44.2
Q ss_pred HHHHHHHHhCCCeeEEecCCCCHHHHHHHHHHHhccCceEEEEEeeccc-HHHHHHHHHhcCCcEEEeeCCCC
Q psy437 48 DSVAAALAQERINAISYHAGLADKLRNEVQMKWISNKVHVGHWTVVSKE-CDSVAAALAQERINAISYHAGLA 119 (184)
Q Consensus 48 e~la~~L~~~gi~~~~~hg~l~~~~R~~~~~~f~~g~~~vlVaT~tr~~-~e~~a~gL~~~gi~~~vih~~~p 119 (184)
+.+.+.+.+.|+.+..+-++-+++.....++.+....+..||.+++-.+ ...+...+...|+++..++.+.|
T Consensus 19 ~gi~~~a~~~g~~~~~~~~~~~~~~~~~~i~~~~~~~vdgiii~~~~~~~~~~~l~~l~~~~ipvV~~~~~~~ 91 (288)
T cd01538 19 PNFEAALKELGAEVIVQNANGDPAKQISQIENMIAKGVDVLVIAPVDGEALASAVEKAADAGIPVIAYDRLIL 91 (288)
T ss_pred HHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHHcCCCEEEEecCChhhHHHHHHHHHHCCCCEEEECCCCC
Confidence 3445555667888777766656665667777777777877776653221 22333445667888666655443
No 326
>cd06299 PBP1_LacI_like_13 Ligand-binding domain of DNA-binding regulatory protein from Corynebacterium glutamicum which has a unique ability to produce significant amounts of L-glutamate directly from cheap sugar and ammonia. This group includes the ligand-binding domain of DNA-binding regulatory protein from Corynebacterium glutamicum which has a unique ability to produce significant amounts of L-glutamate directly from cheap sugar and ammonia. This regulatory protein is a member of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial trans
Probab=74.17 E-value=37 Score=26.02 Aligned_cols=11 Identities=27% Similarity=0.495 Sum_probs=4.6
Q ss_pred HHhCCCeeEEe
Q psy437 54 LAQERINAISY 64 (184)
Q Consensus 54 L~~~gi~~~~~ 64 (184)
|...++....+
T Consensus 51 l~~~~vdgiIi 61 (265)
T cd06299 51 LLSQRVDGIIV 61 (265)
T ss_pred HHhcCCCEEEE
Confidence 33444443333
No 327
>cd06292 PBP1_LacI_like_10 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=74.10 E-value=38 Score=26.13 Aligned_cols=71 Identities=13% Similarity=0.045 Sum_probs=35.5
Q ss_pred HHHHHHHHhCCCeeEEecCCCCHHHHHHHHHHHhccCceEEEEEeeccc----HHHHHHHHHhcCCcEEEeeCCC
Q psy437 48 DSVAAALAQERINAISYHAGLADKLRNEVQMKWISNKVHVGHWTVVSKE----CDSVAAALAQERINAISYHAGL 118 (184)
Q Consensus 48 e~la~~L~~~gi~~~~~hg~l~~~~R~~~~~~f~~g~~~vlVaT~tr~~----~e~~a~gL~~~gi~~~vih~~~ 118 (184)
..+.+.+.+.|+.+..+...-+.+...+.++.+.+..+..+|.+++... .......+...|+++.++..+.
T Consensus 19 ~gi~~~~~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~~~~~~i~~~~~~~ipvV~i~~~~ 93 (273)
T cd06292 19 EAIEAALAQYGYTVLLCNTYRGGVSEADYVEDLLARGVRGVVFISSLHADTHADHSHYERLAERGLPVVLVNGRA 93 (273)
T ss_pred HHHHHHHHHCCCEEEEEeCCCChHHHHHHHHHHHHcCCCEEEEeCCCCCcccchhHHHHHHHhCCCCEEEEcCCC
Confidence 3444445556666655544444444555666666666665555433211 1111234455666654554443
No 328
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative. This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli.
Probab=74.00 E-value=26 Score=32.93 Aligned_cols=74 Identities=11% Similarity=0.080 Sum_probs=54.6
Q ss_pred cCceEEEEEeecccHHHHHHHHHh----cCCcEEEeeCCCChHHHHHHHHHhhCCCceEEEE-------EecCCc--cEE
Q psy437 83 NKVHVGHWTVVSKECDSVAAALAQ----ERINAISYHAGLADKLRNEVQMKWISNKVHLYNV-------WKIQWK--RII 149 (184)
Q Consensus 83 g~~~vlVaT~tr~~~e~~a~gL~~----~gi~~~vih~~~p~~~r~~~~~~f~~~~~~v~va-------~D~~~v--r~v 149 (184)
...++||.+++....+.++..|.. .++. +..+ +.. ..|..+.+.|+.++..|+++ +|.|+. +.|
T Consensus 673 ~~g~~LVlftS~~~l~~v~~~L~~~~~~~~~~-~l~q-~~~-~~r~~ll~~F~~~~~~iLlgt~sf~EGVD~~g~~l~~v 749 (850)
T TIGR01407 673 TSPKILVLFTSYEMLHMVYDMLNELPEFEGYE-VLAQ-GIN-GSRAKIKKRFNNGEKAILLGTSSFWEGVDFPGNGLVCL 749 (850)
T ss_pred cCCCEEEEeCCHHHHHHHHHHHhhhccccCce-EEec-CCC-ccHHHHHHHHHhCCCeEEEEcceeecccccCCCceEEE
Confidence 445799999999999999999864 4555 2222 332 46788899999998888887 377665 467
Q ss_pred EecCCCCCcc
Q psy437 150 WIHSLVLIKP 159 (184)
Q Consensus 150 ~~~~~p~~~e 159 (184)
+...+|-..+
T Consensus 750 iI~~LPf~~p 759 (850)
T TIGR01407 750 VIPRLPFANP 759 (850)
T ss_pred EEeCCCCCCC
Confidence 7888887643
No 329
>cd01448 TST_Repeat_1 Thiosulfate sulfurtransferase (TST), N-terminal, inactive domain. TST contains 2 copies of the Rhodanese Homology Domain; this is the 1st repeat, which does not contain the catalytically active Cys residue. The role of the 1st repeat is uncertain, but it is believed to be involved in protein interaction.
Probab=73.83 E-value=4.2 Score=27.96 Aligned_cols=37 Identities=14% Similarity=-0.043 Sum_probs=29.5
Q ss_pred CCCcEEEEecc-HHHHHHHHHHHHhCCCe-eEEecCCCC
Q psy437 33 SGQSGIVYCLT-RKECDSVAAALAQERIN-AISYHAGLA 69 (184)
Q Consensus 33 ~~~~~IIf~~t-r~~~e~la~~L~~~gi~-~~~~hg~l~ 69 (184)
+..+.|+||.+ -..+...+..|...|++ +..+-||+.
T Consensus 78 ~~~~vv~~c~~g~~~a~~~~~~l~~~G~~~v~~l~GG~~ 116 (122)
T cd01448 78 NDDTVVVYDDGGGFFAARAWWTLRYFGHENVRVLDGGLQ 116 (122)
T ss_pred CCCEEEEECCCCCccHHHHHHHHHHcCCCCEEEecCCHH
Confidence 35567889988 47788888899999987 778888874
No 330
>KOG0951|consensus
Probab=73.71 E-value=51 Score=32.64 Aligned_cols=106 Identities=22% Similarity=0.174 Sum_probs=70.5
Q ss_pred HHHHHh--ccCceEEEEEeecccHHHHHHHHHh-------------cCC------------------------cEEEeeC
Q psy437 76 VQMKWI--SNKVHVGHWTVVSKECDSVAAALAQ-------------ERI------------------------NAISYHA 116 (184)
Q Consensus 76 ~~~~f~--~g~~~vlVaT~tr~~~e~~a~gL~~-------------~gi------------------------~~~vih~ 116 (184)
+.++.. .|+.+|||+.-+|+++...|+.+.. .|- ...+=|+
T Consensus 536 ~yeKVm~~agk~qVLVFVHsRkET~ktA~aIRd~~le~dtls~fmre~s~s~eilrtea~~~kn~dLkdLLpygfaIHhA 615 (1674)
T KOG0951|consen 536 CYEKVLEHAGKNQVLVFVHSRKETAKTARAIRDKALEEDTLSRFMREDSASREILRTEAGQAKNPDLKDLLPYGFAIHHA 615 (1674)
T ss_pred HHHHHHHhCCCCcEEEEEEechHHHHHHHHHHHHHhhhhHHHHHHhcccchhhhhhhhhhcccChhHHHHhhccceeecc
Confidence 444444 3788999999999998888887740 110 1266789
Q ss_pred CCChHHHHHHHHHhhCCCceEEEE-------EecCCccEEEe----cCC------CCCccccccccccccCCcc---ccc
Q psy437 117 GLADKLRNEVQMKWISNKVHLYNV-------WKIQWKRIIWI----HSL------VLIKPDYLPPILDLRLGRE---DIR 176 (184)
Q Consensus 117 ~~p~~~r~~~~~~f~~~~~~v~va-------~D~~~vr~v~~----~~~------p~~~e~y~~~i~~~~~~r~---~~~ 176 (184)
||....|+-+-.-|..|.++|+|. .+.|--.-+|. |+. +-++-+-+|.. +|+||. +-.
T Consensus 616 Gl~R~dR~~~EdLf~~g~iqvlvstatlawgvnlpahtViikgtqvy~pekg~w~elsp~dv~qml--gragrp~~D~~g 693 (1674)
T KOG0951|consen 616 GLNRKDRELVEDLFADGHIQVLVSTATLAWGVNLPAHTVIIKGTQVYDPEKGRWTELSPLDVMQML--GRAGRPQYDTCG 693 (1674)
T ss_pred CCCcchHHHHHHHHhcCceeEEEeehhhhhhcCCCcceEEecCccccCcccCccccCCHHHHHHHH--hhcCCCccCcCC
Confidence 999999999999999999999997 25554333332 222 22333444544 588885 555
Q ss_pred ccccccC
Q psy437 177 EGETMEG 183 (184)
Q Consensus 177 ~~~~~~~ 183 (184)
+|-+.++
T Consensus 694 egiiit~ 700 (1674)
T KOG0951|consen 694 EGIIITD 700 (1674)
T ss_pred ceeeccC
Confidence 5554443
No 331
>cd01542 PBP1_TreR_like Ligand-binding domain of DNA transcription repressor specific for trehalose (TreR) which is a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor specific for trehalose (TreR) which is a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of TreR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding wh
Probab=73.66 E-value=38 Score=25.87 Aligned_cols=58 Identities=17% Similarity=0.021 Sum_probs=28.3
Q ss_pred HHHHHHhCCCeeEEecCCCCHHHHHHHHHHHhccCceEEEE-----------EeecccHHHHHHHHHhcCCc
Q psy437 50 VAAALAQERINAISYHAGLADKLRNEVQMKWISNKVHVGHW-----------TVVSKECDSVAAALAQERIN 110 (184)
Q Consensus 50 la~~L~~~gi~~~~~hg~l~~~~R~~~~~~f~~g~~~vlVa-----------T~tr~~~e~~a~gL~~~gi~ 110 (184)
..+.|...++....+-+.... ...+..+.+...+++.. ++.......++..|-..|.+
T Consensus 47 ~i~~l~~~~~dgii~~~~~~~---~~~~~~~~~~~ipvv~~~~~~~~~~~v~~d~~~~~~~~~~~l~~~g~~ 115 (259)
T cd01542 47 ALELLARQKVDGIILLATTIT---DEHREAIKKLNVPVVVVGQDYPGISSVVYDDYGAGYELGEYLAQQGHK 115 (259)
T ss_pred HHHHHHhcCCCEEEEeCCCCC---HHHHHHHhcCCCCEEEEeccCCCCCEEEECcHHHHHHHHHHHHHcCCC
Confidence 334455556665555443221 13444444434444433 22234456677777666665
No 332
>PRK05928 hemD uroporphyrinogen-III synthase; Reviewed
Probab=72.87 E-value=12 Score=28.79 Aligned_cols=74 Identities=12% Similarity=0.054 Sum_probs=45.1
Q ss_pred HHHHHHHHHhhcCCCcEEEEeccHHHHHHHHHHHHhCCCeeE---EecCCCCHHHHHHHHHHHhccCceEEEEEeec
Q psy437 21 LKEVISLIKAKYSGQSGIVYCLTRKECDSVAAALAQERINAI---SYHAGLADKLRNEVQMKWISNKVHVGHWTVVS 94 (184)
Q Consensus 21 ~~~L~~~l~~~~~~~~~IIf~~tr~~~e~la~~L~~~gi~~~---~~hg~l~~~~R~~~~~~f~~g~~~vlVaT~tr 94 (184)
.+.++..|.+....+..|++.......+.+.+.|++.|..+. .|.-......-......+..+...+|++|++.
T Consensus 111 ~~~l~~~l~~~~~~~~~ili~~~~~~~~~l~~~L~~~G~~v~~~~~Y~~~~~~~~~~~~~~~~~~~~~d~ivftS~~ 187 (249)
T PRK05928 111 SSELLLELPELLLKGKRVLYLRGNGGREVLGDTLEERGAEVDECEVYERVPPKLDGAELLARLQSGEVDAVIFTSPS 187 (249)
T ss_pred ChHHHHhChhhhcCCCEEEEECCCCCHHHHHHHHHHCCCEEeEEEEEEeeCCCCChHHHHHHHHhCCCCEEEECCHH
Confidence 345555554431234556676676778899999999887643 34332222222344555667788999999843
No 333
>cd06305 PBP1_methylthioribose_binding_like Methylthioribose-binding protein-like of ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily. Methylthioribose-binding protein-like of ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. The sugar-binding domain of the periplasmic proteins in this group is also homologous to the ligand-binding domain of eukaryotic receptors such as metabotropic glutamate receptor (mGluR), DNA-binding transcriptional repressors such as LacI and GalR.
Probab=72.73 E-value=41 Score=25.90 Aligned_cols=12 Identities=8% Similarity=-0.044 Sum_probs=5.6
Q ss_pred ccHHHHHHHHHh
Q psy437 95 KECDSVAAALAQ 106 (184)
Q Consensus 95 ~~~e~~a~gL~~ 106 (184)
.....+++.|-.
T Consensus 104 ~~g~~~~~~l~~ 115 (273)
T cd06305 104 SLARLSLDQLVK 115 (273)
T ss_pred HHHHHHHHHHHH
Confidence 344445555543
No 334
>PRK10287 thiosulfate:cyanide sulfurtransferase; Provisional
Probab=72.50 E-value=7.7 Score=26.41 Aligned_cols=36 Identities=14% Similarity=0.275 Sum_probs=28.6
Q ss_pred CCcEEEEeccHHHHHHHHHHHHhCCCeeEEecCCCC
Q psy437 34 GQSGIVYCLTRKECDSVAAALAQERINAISYHAGLA 69 (184)
Q Consensus 34 ~~~~IIf~~tr~~~e~la~~L~~~gi~~~~~hg~l~ 69 (184)
..+.++||.+-..+...+..|.+.|+.....-||+.
T Consensus 60 ~~~IVlyC~~G~rS~~aa~~L~~~G~~~v~~~GG~~ 95 (104)
T PRK10287 60 NDTVKLYCNAGRQSGQAKEILSEMGYTHAENAGGLK 95 (104)
T ss_pred CCeEEEEeCCChHHHHHHHHHHHcCCCeEEecCCHH
Confidence 345788999988888889999999987656668764
No 335
>TIGR02634 xylF D-xylose ABC transporter, substrate-binding protein. Members of this family are periplasmic (when in Gram-negative bacteria) binding proteins for D-xylose import by a high-affinity ATP-binding cassette (ABC) transporter.
Probab=72.10 E-value=49 Score=26.45 Aligned_cols=13 Identities=15% Similarity=0.049 Sum_probs=5.5
Q ss_pred cHHHHHHHHHhcC
Q psy437 96 ECDSVAAALAQER 108 (184)
Q Consensus 96 ~~e~~a~gL~~~g 108 (184)
....+++.|...+
T Consensus 105 ~g~~~~~~L~~~g 117 (302)
T TIGR02634 105 VGEMQARAVLEAA 117 (302)
T ss_pred HHHHHHHHHHhhC
Confidence 3444444444333
No 336
>cd01522 RHOD_1 Member of the Rhodanese Homology Domain superfamily, subgroup 1. This CD includes the putative rhodanese-related sulfurtransferases of several uncharacterized proteins.
Probab=71.90 E-value=5.8 Score=27.30 Aligned_cols=38 Identities=16% Similarity=0.239 Sum_probs=30.7
Q ss_pred CCCcEEEEeccHHHHHHHHHHHHhCCCe-eEEecCCCCH
Q psy437 33 SGQSGIVYCLTRKECDSVAAALAQERIN-AISYHAGLAD 70 (184)
Q Consensus 33 ~~~~~IIf~~tr~~~e~la~~L~~~gi~-~~~~hg~l~~ 70 (184)
+..+.|+||.+-..+...+..|...|+. +..+.||++.
T Consensus 63 ~~~~ivv~C~~G~rs~~aa~~L~~~G~~~v~~l~gG~~~ 101 (117)
T cd01522 63 KDRPVLLLCRSGNRSIAAAEAAAQAGFTNVYNVLEGFEG 101 (117)
T ss_pred CCCeEEEEcCCCccHHHHHHHHHHCCCCeEEECcCceec
Confidence 4567888999988888899999999986 5568888764
No 337
>cd06278 PBP1_LacI_like_2 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=71.65 E-value=43 Score=25.60 Aligned_cols=25 Identities=8% Similarity=-0.138 Sum_probs=14.3
Q ss_pred cccHHHHHHHHHhcCCc-EEEeeCCC
Q psy437 94 SKECDSVAAALAQERIN-AISYHAGL 118 (184)
Q Consensus 94 r~~~e~~a~gL~~~gi~-~~vih~~~ 118 (184)
......++..|...|.+ ..++++..
T Consensus 100 ~~~g~~~~~~l~~~g~~~i~~i~~~~ 125 (266)
T cd06278 100 YEAGRLAAELLLAKGCRRIAFIGGPA 125 (266)
T ss_pred HHHHHHHHHHHHHCCCceEEEEcCCC
Confidence 34566677777666654 34454443
No 338
>PF00701 DHDPS: Dihydrodipicolinate synthetase family; InterPro: IPR002220 Dihydropicolinate synthase (DHDPS) is the key enzyme in lysine biosynthesis via the diaminopimelate pathway of prokaryotes, some phycomycetes and higher plants. The enzyme catalyses the condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a ping-pong mechanism in which pyruvate binds to the enzyme by forming a Schiff-base with a lysine residue []. Three other proteins are structurally related to DHDPS and probably also act via a similar catalytic mechanism. These are Escherichia coli N-acetylneuraminate lyase (4.1.3.3 from EC) (gene nanA), which catalyzes the condensation of N-acetyl-D-mannosamine and pyruvate to form N-acetylneuraminate; Rhizobium meliloti (Sinorhizobium meliloti) protein mosA [], which is involved in the biosynthesis of the rhizopine 3-o-methyl-scyllo-inosamine; and E. coli hypothetical protein yjhH. The sequences of DHDPS from different sources are well-conserved. The structure takes the form of a homotetramer, in which 2 monomers are related by an approximate 2-fold symmetry []. Each monomer comprises 2 domains: an 8-fold alpha-/beta-barrel, and a C-terminal alpha-helical domain. The fold resembles that of N-acetylneuraminate lyase. The active site lysine is located in the barrel domain, and has access via 2 channels on the C-terminal side of the barrel.; GO: 0016829 lyase activity, 0008152 metabolic process; PDB: 3B4U_B 3S8H_A 3QZE_B 1XXX_F 3L21_F 3IRD_A 3A5F_B 3G0S_B 3DAQ_C 3UQN_A ....
Probab=71.47 E-value=51 Score=26.42 Aligned_cols=94 Identities=12% Similarity=0.057 Sum_probs=59.6
Q ss_pred HHHHHHHHHhCCCeeEEecC------CCCHHHHHHHHHHHhc---cCceEEEEEee--cccHHHHHHHHHhcCCcEEEe-
Q psy437 47 CDSVAAALAQERINAISYHA------GLADKLRNEVQMKWIS---NKVHVGHWTVV--SKECDSVAAALAQERINAISY- 114 (184)
Q Consensus 47 ~e~la~~L~~~gi~~~~~hg------~l~~~~R~~~~~~f~~---g~~~vlVaT~t--r~~~e~~a~gL~~~gi~~~vi- 114 (184)
.+.+.++|-+.|+...++-| .|+.+||.++++.... +++++++.+.. -.++-..|+.....|+++..+
T Consensus 24 ~~~~i~~l~~~Gv~gl~~~GstGE~~~Lt~~Er~~l~~~~~~~~~~~~~vi~gv~~~st~~~i~~a~~a~~~Gad~v~v~ 103 (289)
T PF00701_consen 24 LKRLIDFLIEAGVDGLVVLGSTGEFYSLTDEERKELLEIVVEAAAGRVPVIAGVGANSTEEAIELARHAQDAGADAVLVI 103 (289)
T ss_dssp HHHHHHHHHHTTSSEEEESSTTTTGGGS-HHHHHHHHHHHHHHHTTSSEEEEEEESSSHHHHHHHHHHHHHTT-SEEEEE
T ss_pred HHHHHHHHHHcCCCEEEECCCCcccccCCHHHHHHHHHHHHHHccCceEEEecCcchhHHHHHHHHHHHhhcCceEEEEe
Confidence 34444455555655444443 3678999998888764 78888887774 356666677778889885432
Q ss_pred ---eCCCC-hHHHHHHHHHhhCCCceEEEE
Q psy437 115 ---HAGLA-DKLRNEVQMKWISNKVHLYNV 140 (184)
Q Consensus 115 ---h~~~p-~~~r~~~~~~f~~~~~~v~va 140 (184)
++..+ +....|........+.++++.
T Consensus 104 ~P~~~~~s~~~l~~y~~~ia~~~~~pi~iY 133 (289)
T PF00701_consen 104 PPYYFKPSQEELIDYFRAIADATDLPIIIY 133 (289)
T ss_dssp ESTSSSCCHHHHHHHHHHHHHHSSSEEEEE
T ss_pred ccccccchhhHHHHHHHHHHhhcCCCEEEE
Confidence 23222 244677777777777888887
No 339
>cd06283 PBP1_RegR_EndR_KdgR_like Ligand-binding domain of DNA transcription repressor RegR and other putative regulators such as KdgR and EndR. Ligand-binding domain of DNA transcription repressor RegR and other putative regulators such as KdgR and EndR, all of which are members of the LacI-GalR family of bacterial transcription regulators. RegR regulates bacterial competence and the expression of virulence factors, including hyaluronidase. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA b
Probab=71.03 E-value=44 Score=25.53 Aligned_cols=68 Identities=10% Similarity=0.017 Sum_probs=34.5
Q ss_pred HHHHHHhCCCeeEEecCCCCHHHHHHHHHHHhccCceEE-------------EEEeecccHHHHHHHHHhcCCcEEEeeC
Q psy437 50 VAAALAQERINAISYHAGLADKLRNEVQMKWISNKVHVG-------------HWTVVSKECDSVAAALAQERINAISYHA 116 (184)
Q Consensus 50 la~~L~~~gi~~~~~hg~l~~~~R~~~~~~f~~g~~~vl-------------VaT~tr~~~e~~a~gL~~~gi~~~vih~ 116 (184)
..+.|...++....+.+.-.... .++.+....++++ |.++.......+++.|-..|.+-.++=+
T Consensus 47 ~~~~l~~~~~dgiii~~~~~~~~---~l~~~~~~~ipvV~~~~~~~~~~~~~v~~d~~~~g~~~~~~l~~~g~~~i~~l~ 123 (267)
T cd06283 47 YLESLLAYQVDGLIVNPTGNNKE---LYQRLAKNGKPVVLVDRKIPELGVDTVTLDNYEAAKEAVDHLIEKGYERILFVT 123 (267)
T ss_pred HHHHHHHcCcCEEEEeCCCCChH---HHHHHhcCCCCEEEEcCCCCCCCCCEEEeccHHHHHHHHHHHHHcCCCcEEEEe
Confidence 33445555666555554322221 2444444444443 3333345677888888777766444444
Q ss_pred CCCh
Q psy437 117 GLAD 120 (184)
Q Consensus 117 ~~p~ 120 (184)
+.+.
T Consensus 124 ~~~~ 127 (267)
T cd06283 124 EPLD 127 (267)
T ss_pred cCcc
Confidence 4443
No 340
>PF02602 HEM4: Uroporphyrinogen-III synthase HemD; InterPro: IPR003754 Tetrapyrroles are large macrocyclic compounds derived from a common biosynthetic pathway []. The end-product, uroporphyrinogen III, is used to synthesise a number of important molecules, including vitamin B12, haem, sirohaem, chlorophyll, coenzyme F430 and phytochromobilin []. The first stage in tetrapyrrole synthesis is the synthesis of 5-aminoaevulinic acid ALA via two possible routes: (1) condensation of succinyl CoA and glycine (C4 pathway) using ALA synthase (2.3.1.37 from EC), or (2) decarboxylation of glutamate (C5 pathway) via three different enzymes, glutamyl-tRNA synthetase (6.1.1.17 from EC) to charge a tRNA with glutamate, glutamyl-tRNA reductase (1.2.1.70 from EC) to reduce glutamyl-tRNA to glutamate-1-semialdehyde (GSA), and GSA aminotransferase (5.4.3.8 from EC) to catalyse a transamination reaction to produce ALA. The second stage is to convert ALA to uroporphyrinogen III, the first macrocyclic tetrapyrrolic structure in the pathway. This is achieved by the action of three enzymes in one common pathway: porphobilinogen (PBG) synthase (or ALA dehydratase, 4.2.1.24 from EC) to condense two ALA molecules to generate porphobilinogen; hydroxymethylbilane synthase (or PBG deaminase, 2.5.1.61 from EC) to polymerise four PBG molecules into preuroporphyrinogen (tetrapyrrole structure); and uroporphyrinogen III synthase (4.2.1.75 from EC) to link two pyrrole units together (rings A and D) to yield uroporphyrinogen III. Uroporphyrinogen III is the first branch point of the pathway. To synthesise cobalamin (vitamin B12), sirohaem, and coenzyme F430, uroporphyrinogen III needs to be converted into precorrin-2 by the action of uroporphyrinogen III methyltransferase (2.1.1.107 from EC). To synthesise haem and chlorophyll, uroporphyrinogen III needs to be decarboxylated into coproporphyrinogen III by the action of uroporphyrinogen III decarboxylase (4.1.1.37 from EC) []. This entry represents uroporphyrinogen III synthase (4.2.1.75 from EC) which functions during the second stage of tetrapyrrole biosynthesis. This enzyme catalyses the inversion of the final pyrrole unit (ring D) of the linear tetrapyrrole molecule, linking it to the first pyrrole unit (ring A), thereby generating a large macrocyclic structure called uroporphyrinogen III []. The enzyme folds into two alpha/beta domains connected by a beta-ladder, the active site being located between the two domains []. Congenital erythropoietic porphyria (CEP) is an autosomal recessive inborn error of metabolism that results from the markedly deficient activity of uroporphyrinogen III synthase []. ; GO: 0004852 uroporphyrinogen-III synthase activity, 0033014 tetrapyrrole biosynthetic process; PDB: 1WD7_B 1WCX_A 1WCW_A 3D8R_A 3D8T_B 3D8S_A 3D8N_A 3RE1_A 3MW8_A 3P9Z_A ....
Probab=70.98 E-value=27 Score=26.66 Aligned_cols=84 Identities=11% Similarity=0.021 Sum_probs=52.0
Q ss_pred HHhCCCeeEEecC-CCCHHHHHHHHHHHhccCceEEEEEeecccHHHHHHHHHhcCCc---EEEeeCCCChHHHHHHHHH
Q psy437 54 LAQERINAISYHA-GLADKLRNEVQMKWISNKVHVGHWTVVSKECDSVAAALAQERIN---AISYHAGLADKLRNEVQMK 129 (184)
Q Consensus 54 L~~~gi~~~~~hg-~l~~~~R~~~~~~f~~g~~~vlVaT~tr~~~e~~a~gL~~~gi~---~~vih~~~p~~~r~~~~~~ 129 (184)
|.+.|+....+.. .-+.+.=.+.+.....+ .++++.+...+ -+.+...|...|+. ..+|.- .+......+.+.
T Consensus 87 l~~~G~~~~~~~~~~~~s~~L~~~l~~~~~~-~~vl~~~g~~~-~~~l~~~L~~~g~~v~~~~vY~~-~~~~~~~~~~~~ 163 (231)
T PF02602_consen 87 LREYGFQPDFVPSSEGSSEGLAELLKEQLRG-KRVLILRGEGG-RPDLPEKLREAGIEVTEVIVYET-PPEELSPELKEA 163 (231)
T ss_dssp HHHTT-EECEE-TTSSSHHHHHGGHHHCCTT-EEEEEEESSSS-CHHHHHHHHHTTEEEEEEECEEE-EEHHHHHHHHHH
T ss_pred HHHcCCCccccCCCCCCHHHHHHHHHhhCCC-CeEEEEcCCCc-cHHHHHHHHHCCCeEEEEEEeec-ccccchHHHHHH
Confidence 3345777655444 33433333333333333 55666554333 44678889888866 367888 788888888888
Q ss_pred hhCCCceEEEE
Q psy437 130 WISNKVHLYNV 140 (184)
Q Consensus 130 f~~~~~~v~va 140 (184)
+..+.+.+++.
T Consensus 164 l~~~~~~~v~f 174 (231)
T PF02602_consen 164 LDRGEIDAVVF 174 (231)
T ss_dssp HHHTTTSEEEE
T ss_pred HHcCCCCEEEE
Confidence 98888888887
No 341
>cd00954 NAL N-Acetylneuraminic acid aldolase, also called N-acetylneuraminate lyase (NAL), which catalyses the reversible aldol reaction of N-acetyl-D-mannosamine and pyruvate to give N-acetyl-D-neuraminic acid (D-sialic acid). It has a widespread application as biocatalyst for the synthesis of sialic acid and its derivatives. This enzyme has been shown to be quite specific for pyruvate as the donor, but flexible to a variety of D- and, to some extent, L-hexoses and pentoses as acceptor substrates. NAL is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases.
Probab=70.92 E-value=53 Score=26.41 Aligned_cols=94 Identities=12% Similarity=0.068 Sum_probs=58.1
Q ss_pred HHHHHHHHHhC-CCeeEEecC------CCCHHHHHHHHHHHhc---cCceEEEEEe--ecccHHHHHHHHHhcCCcEEEe
Q psy437 47 CDSVAAALAQE-RINAISYHA------GLADKLRNEVQMKWIS---NKVHVGHWTV--VSKECDSVAAALAQERINAISY 114 (184)
Q Consensus 47 ~e~la~~L~~~-gi~~~~~hg------~l~~~~R~~~~~~f~~---g~~~vlVaT~--tr~~~e~~a~gL~~~gi~~~vi 114 (184)
...+.+++... |+...+.-| .|+.+||.++++.+.. |+++|++.+. +-.++-.+|+.....|+++.++
T Consensus 23 ~~~~i~~l~~~~Gv~gi~~~GstGE~~~Lt~~Er~~~~~~~~~~~~~~~~viagv~~~~~~~ai~~a~~a~~~Gad~v~~ 102 (288)
T cd00954 23 LRAIVDYLIEKQGVDGLYVNGSTGEGFLLSVEERKQIAEIVAEAAKGKVTLIAHVGSLNLKESQELAKHAEELGYDAISA 102 (288)
T ss_pred HHHHHHHHHhcCCCCEEEECcCCcCcccCCHHHHHHHHHHHHHHhCCCCeEEeccCCCCHHHHHHHHHHHHHcCCCEEEE
Confidence 33444444445 555444444 2678999999887764 7778887664 3456667777888889885442
Q ss_pred ----eCCC-ChHHHHHHHHHhhCC-CceEEEE
Q psy437 115 ----HAGL-ADKLRNEVQMKWISN-KVHLYNV 140 (184)
Q Consensus 115 ----h~~~-p~~~r~~~~~~f~~~-~~~v~va 140 (184)
.+.. ++....|..+.-..- +++|++.
T Consensus 103 ~~P~y~~~~~~~i~~~~~~v~~a~~~lpi~iY 134 (288)
T cd00954 103 ITPFYYKFSFEEIKDYYREIIAAAASLPMIIY 134 (288)
T ss_pred eCCCCCCCCHHHHHHHHHHHHHhcCCCCEEEE
Confidence 2221 234556666665555 6777774
No 342
>PF02602 HEM4: Uroporphyrinogen-III synthase HemD; InterPro: IPR003754 Tetrapyrroles are large macrocyclic compounds derived from a common biosynthetic pathway []. The end-product, uroporphyrinogen III, is used to synthesise a number of important molecules, including vitamin B12, haem, sirohaem, chlorophyll, coenzyme F430 and phytochromobilin []. The first stage in tetrapyrrole synthesis is the synthesis of 5-aminoaevulinic acid ALA via two possible routes: (1) condensation of succinyl CoA and glycine (C4 pathway) using ALA synthase (2.3.1.37 from EC), or (2) decarboxylation of glutamate (C5 pathway) via three different enzymes, glutamyl-tRNA synthetase (6.1.1.17 from EC) to charge a tRNA with glutamate, glutamyl-tRNA reductase (1.2.1.70 from EC) to reduce glutamyl-tRNA to glutamate-1-semialdehyde (GSA), and GSA aminotransferase (5.4.3.8 from EC) to catalyse a transamination reaction to produce ALA. The second stage is to convert ALA to uroporphyrinogen III, the first macrocyclic tetrapyrrolic structure in the pathway. This is achieved by the action of three enzymes in one common pathway: porphobilinogen (PBG) synthase (or ALA dehydratase, 4.2.1.24 from EC) to condense two ALA molecules to generate porphobilinogen; hydroxymethylbilane synthase (or PBG deaminase, 2.5.1.61 from EC) to polymerise four PBG molecules into preuroporphyrinogen (tetrapyrrole structure); and uroporphyrinogen III synthase (4.2.1.75 from EC) to link two pyrrole units together (rings A and D) to yield uroporphyrinogen III. Uroporphyrinogen III is the first branch point of the pathway. To synthesise cobalamin (vitamin B12), sirohaem, and coenzyme F430, uroporphyrinogen III needs to be converted into precorrin-2 by the action of uroporphyrinogen III methyltransferase (2.1.1.107 from EC). To synthesise haem and chlorophyll, uroporphyrinogen III needs to be decarboxylated into coproporphyrinogen III by the action of uroporphyrinogen III decarboxylase (4.1.1.37 from EC) []. This entry represents uroporphyrinogen III synthase (4.2.1.75 from EC) which functions during the second stage of tetrapyrrole biosynthesis. This enzyme catalyses the inversion of the final pyrrole unit (ring D) of the linear tetrapyrrole molecule, linking it to the first pyrrole unit (ring A), thereby generating a large macrocyclic structure called uroporphyrinogen III []. The enzyme folds into two alpha/beta domains connected by a beta-ladder, the active site being located between the two domains []. Congenital erythropoietic porphyria (CEP) is an autosomal recessive inborn error of metabolism that results from the markedly deficient activity of uroporphyrinogen III synthase []. ; GO: 0004852 uroporphyrinogen-III synthase activity, 0033014 tetrapyrrole biosynthetic process; PDB: 1WD7_B 1WCX_A 1WCW_A 3D8R_A 3D8T_B 3D8S_A 3D8N_A 3RE1_A 3MW8_A 3P9Z_A ....
Probab=70.11 E-value=6.6 Score=30.11 Aligned_cols=73 Identities=15% Similarity=0.211 Sum_probs=51.1
Q ss_pred hHHHHHHHHHhhcCCCcEEEEeccHHHHHHHHHHHHhCCCee---EEecCCCCHHHHHHHHHHHhccCceEEEEEeec
Q psy437 20 VLKEVISLIKAKYSGQSGIVYCLTRKECDSVAAALAQERINA---ISYHAGLADKLRNEVQMKWISNKVHVGHWTVVS 94 (184)
Q Consensus 20 k~~~L~~~l~~~~~~~~~IIf~~tr~~~e~la~~L~~~gi~~---~~~hg~l~~~~R~~~~~~f~~g~~~vlVaT~tr 94 (184)
.-+.|.+.|.+...+.+ ++|......-..+.+.|.+.|+.+ .+|.- ..........+.+..++..++++|++.
T Consensus 103 ~s~~L~~~l~~~~~~~~-vl~~~g~~~~~~l~~~L~~~g~~v~~~~vY~~-~~~~~~~~~~~~l~~~~~~~v~ftS~~ 178 (231)
T PF02602_consen 103 SSEGLAELLKEQLRGKR-VLILRGEGGRPDLPEKLREAGIEVTEVIVYET-PPEELSPELKEALDRGEIDAVVFTSPS 178 (231)
T ss_dssp SHHHHHGGHHHCCTTEE-EEEEESSSSCHHHHHHHHHTTEEEEEEECEEE-EEHHHHHHHHHHHHHTTTSEEEESSHH
T ss_pred CHHHHHHHHHhhCCCCe-EEEEcCCCccHHHHHHHHHCCCeEEEEEEeec-ccccchHHHHHHHHcCCCCEEEECCHH
Confidence 45677777765334434 454444444667889999888654 45665 567788888999999999999999854
No 343
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=70.01 E-value=27 Score=22.71 Aligned_cols=44 Identities=9% Similarity=0.096 Sum_probs=30.5
Q ss_pred CCcEEEEec------cHHHHHHHHHHHHhCCCeeEEecCCCCHHHHHHHH
Q psy437 34 GQSGIVYCL------TRKECDSVAAALAQERINAISYHAGLADKLRNEVQ 77 (184)
Q Consensus 34 ~~~~IIf~~------tr~~~e~la~~L~~~gi~~~~~hg~l~~~~R~~~~ 77 (184)
..+.+||+. .+..|..+.+.|.+.|++...+-=..+.+.+..+.
T Consensus 7 ~~~vvvf~k~~~~~~~Cp~C~~ak~~L~~~~i~y~~idv~~~~~~~~~l~ 56 (90)
T cd03028 7 ENPVVLFMKGTPEEPRCGFSRKVVQILNQLGVDFGTFDILEDEEVRQGLK 56 (90)
T ss_pred cCCEEEEEcCCCCCCCCcHHHHHHHHHHHcCCCeEEEEcCCCHHHHHHHH
Confidence 468999975 67788999999999998766654333443333333
No 344
>cd06289 PBP1_MalI_like Ligand-binding domain of MalI, a transcription regulator of the maltose system of Escherichia coli and its close homologs from other bacteria. This group includes the ligand-binding domain of MalI, a transcription regulator of the maltose system of Escherichia coli and its close homologs from other bacteria. They are members of the LacI-GalR family of repressor proteins which are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=69.81 E-value=48 Score=25.38 Aligned_cols=60 Identities=5% Similarity=-0.007 Sum_probs=29.9
Q ss_pred HHHHHHHhCCCeeEEecCCCCHHHHHHHHHHHhccCceEEEE-------------EeecccHHHHHHHHHhcCCc
Q psy437 49 SVAAALAQERINAISYHAGLADKLRNEVQMKWISNKVHVGHW-------------TVVSKECDSVAAALAQERIN 110 (184)
Q Consensus 49 ~la~~L~~~gi~~~~~hg~l~~~~R~~~~~~f~~g~~~vlVa-------------T~tr~~~e~~a~gL~~~gi~ 110 (184)
.+.+.|...++....+.+..+... ..++.+....++++.. ++-......++..|-..|.+
T Consensus 46 ~~i~~~~~~~vdgiii~~~~~~~~--~~~~~~~~~~ipvV~~~~~~~~~~~~~v~~d~~~~~~~~~~~l~~~g~~ 118 (268)
T cd06289 46 QLLSTMLEHGVAGIILCPAAGTSP--DLLKRLAESGIPVVLVAREVAGAPFDYVGPDNAAGARLATEHLISLGHR 118 (268)
T ss_pred HHHHHHHHcCCCEEEEeCCCCccH--HHHHHHHhcCCCEEEEeccCCCCCCCEEeecchHHHHHHHHHHHHCCCC
Confidence 344445555666555554322211 2455555555554433 22224466667777666654
No 345
>PLN02160 thiosulfate sulfurtransferase
Probab=69.74 E-value=7.6 Score=27.67 Aligned_cols=37 Identities=11% Similarity=0.109 Sum_probs=31.0
Q ss_pred CCCcEEEEeccHHHHHHHHHHHHhCCCe-eEEecCCCC
Q psy437 33 SGQSGIVYCLTRKECDSVAAALAQERIN-AISYHAGLA 69 (184)
Q Consensus 33 ~~~~~IIf~~tr~~~e~la~~L~~~gi~-~~~~hg~l~ 69 (184)
+..+.|+||.+-..+...+..|...|+. +..|.||+.
T Consensus 80 ~~~~IivyC~sG~RS~~Aa~~L~~~G~~~v~~l~GG~~ 117 (136)
T PLN02160 80 PADDILVGCQSGARSLKATTELVAAGYKKVRNKGGGYL 117 (136)
T ss_pred CCCcEEEECCCcHHHHHHHHHHHHcCCCCeeecCCcHH
Confidence 4567888999999999999999999985 667888864
No 346
>cd06274 PBP1_FruR Ligand binding domain of DNA transcription repressor specific for fructose (FruR) and its close homologs. Ligand binding domain of DNA transcription repressor specific for fructose (FruR) and its close homologs, all of which are a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to members of the type I periplasmic binding protein superfamily. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor
Probab=69.62 E-value=49 Score=25.43 Aligned_cols=84 Identities=11% Similarity=0.125 Sum_probs=43.2
Q ss_pred CCcEEEEecc--HHHHHHHHHHHHhCCCeeEEecCCCCHHHHHHHHHHHhccCceEEEE-------------EeecccHH
Q psy437 34 GQSGIVYCLT--RKECDSVAAALAQERINAISYHAGLADKLRNEVQMKWISNKVHVGHW-------------TVVSKECD 98 (184)
Q Consensus 34 ~~~~IIf~~t--r~~~e~la~~L~~~gi~~~~~hg~l~~~~R~~~~~~f~~g~~~vlVa-------------T~tr~~~e 98 (184)
+...++++.. ......+.+.|...++....+-+....... +..+.+..++++.. ++-.....
T Consensus 29 g~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiii~~~~~~~~~---~~~~~~~~ipvV~~~~~~~~~~~~~V~~d~~~~g~ 105 (264)
T cd06274 29 GYQLLIACSDDDPETERETVETLIARQVDALIVAGSLPPDDP---YYLCQKAGLPVVALDRPGDPSRFPSVVSDNRDGAA 105 (264)
T ss_pred CCEEEEEeCCCCHHHHHHHHHHHHHcCCCEEEEcCCCCchHH---HHHHHhcCCCEEEecCccCCCCCCEEEEccHHHHH
Confidence 3444554432 233345555566677776666554322221 44444444454333 33334556
Q ss_pred HHHHHHHhcCCcEEEeeCCCCh
Q psy437 99 SVAAALAQERINAISYHAGLAD 120 (184)
Q Consensus 99 ~~a~gL~~~gi~~~vih~~~p~ 120 (184)
.++..|-..|.+-..+-++.+.
T Consensus 106 ~~~~~l~~~g~~~i~~i~~~~~ 127 (264)
T cd06274 106 ELTRELLAAPPEEVLFLGGLPE 127 (264)
T ss_pred HHHHHHHHCCCCcEEEEeCCCc
Confidence 7777787677664555556554
No 347
>PRK05752 uroporphyrinogen-III synthase; Validated
Probab=68.44 E-value=24 Score=27.77 Aligned_cols=61 Identities=8% Similarity=0.002 Sum_probs=44.2
Q ss_pred CCcEEEEeccHHHHHHHHHHHHhCCCee---EEecCCCCHHHHHHHHHHHhccCceEEEEEeec
Q psy437 34 GQSGIVYCLTRKECDSVAAALAQERINA---ISYHAGLADKLRNEVQMKWISNKVHVGHWTVVS 94 (184)
Q Consensus 34 ~~~~IIf~~tr~~~e~la~~L~~~gi~~---~~~hg~l~~~~R~~~~~~f~~g~~~vlVaT~tr 94 (184)
.++.|++......-+.+.+.|.+.|+.+ ..|.-.........+.+.+..+...++++|++.
T Consensus 129 ~~~~vLi~rg~~~r~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~~~~~~~d~v~ftS~~ 192 (255)
T PRK05752 129 PDPRVLIMRGEGGRELLAERLREQGASVDYLELYRRCLPDYPAGTLLQRVEAERLNGLVVSSGQ 192 (255)
T ss_pred CCCEEEEEccCccHHHHHHHHHHCCCEEeEEEEEeecCCCCCHHHHHHHHHhCCCCEEEECCHH
Confidence 3456777777777788999999999874 446543344445667788888899999999844
No 348
>cd01575 PBP1_GntR Ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators. This group represents the ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of GntR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding,
Probab=68.11 E-value=52 Score=25.16 Aligned_cols=31 Identities=10% Similarity=-0.006 Sum_probs=16.6
Q ss_pred EEEeecccHHHHHHHHHhcCCcEEEeeCCCC
Q psy437 89 HWTVVSKECDSVAAALAQERINAISYHAGLA 119 (184)
Q Consensus 89 VaT~tr~~~e~~a~gL~~~gi~~~vih~~~p 119 (184)
|+++-......+++.|-..|.+...+=++.+
T Consensus 96 v~~d~~~~~~~~~~~l~~~g~~~i~~i~~~~ 126 (268)
T cd01575 96 VGFSHAEAGRAMARHLLARGYRRIGFLGARM 126 (268)
T ss_pred EEeCcHHHHHHHHHHHHHCCCCcEEEecCCC
Confidence 3344445566777777666665333333443
No 349
>cd06280 PBP1_LacI_like_4 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=67.98 E-value=53 Score=25.24 Aligned_cols=25 Identities=8% Similarity=-0.008 Sum_probs=17.2
Q ss_pred EEEeecccHHHHHHHHHhcCCcEEE
Q psy437 89 HWTVVSKECDSVAAALAQERINAIS 113 (184)
Q Consensus 89 VaT~tr~~~e~~a~gL~~~gi~~~v 113 (184)
|.++-......++..|-..|.+-.+
T Consensus 95 v~~d~~~~g~~a~~~L~~~g~~~i~ 119 (263)
T cd06280 95 VVLDNRAAARTLVEHLVAQGYRRIG 119 (263)
T ss_pred EEECcHHHHHHHHHHHHHCCCceEE
Confidence 4556666778888888777876344
No 350
>PRK11493 sseA 3-mercaptopyruvate sulfurtransferase; Provisional
Probab=67.85 E-value=13 Score=29.93 Aligned_cols=48 Identities=17% Similarity=0.159 Sum_probs=35.8
Q ss_pred HHHHHHHHhh--cCCCcEEEEeccHHHHHHHHHHHHhCCCe-eEEecCCCC
Q psy437 22 KEVISLIKAK--YSGQSGIVYCLTRKECDSVAAALAQERIN-AISYHAGLA 69 (184)
Q Consensus 22 ~~L~~~l~~~--~~~~~~IIf~~tr~~~e~la~~L~~~gi~-~~~~hg~l~ 69 (184)
+.|..++.+. .+..+.|+||++-..+..++..|...|++ +..|.|++.
T Consensus 217 ~~l~~~~~~~g~~~~~~ii~yC~~G~~A~~~~~~l~~~G~~~v~~y~Gs~~ 267 (281)
T PRK11493 217 DELDAIFFGRGVSFDRPIIASCGSGVTAAVVVLALATLDVPNVKLYDGAWS 267 (281)
T ss_pred HHHHHHHHhcCCCCCCCEEEECCcHHHHHHHHHHHHHcCCCCceeeCCCHH
Confidence 4454445331 13457888999998999999999988996 788999865
No 351
>PRK04147 N-acetylneuraminate lyase; Provisional
Probab=67.83 E-value=63 Score=26.05 Aligned_cols=94 Identities=12% Similarity=-0.009 Sum_probs=58.5
Q ss_pred HHHHHHHHHh-CCCeeEEecC------CCCHHHHHHHHHHHh---ccCceEEEEEee--cccHHHHHHHHHhcCCcEEEe
Q psy437 47 CDSVAAALAQ-ERINAISYHA------GLADKLRNEVQMKWI---SNKVHVGHWTVV--SKECDSVAAALAQERINAISY 114 (184)
Q Consensus 47 ~e~la~~L~~-~gi~~~~~hg------~l~~~~R~~~~~~f~---~g~~~vlVaT~t--r~~~e~~a~gL~~~gi~~~vi 114 (184)
.+.+.++|.. .|+.-.+.-| .|+.+||.++++... .|+++||+.+.+ -.++-..|+.....|++++++
T Consensus 26 ~~~li~~l~~~~Gv~gi~v~GstGE~~~Ls~eEr~~~~~~~~~~~~~~~~viagvg~~~t~~ai~~a~~a~~~Gad~v~v 105 (293)
T PRK04147 26 LRRLVRFNIEKQGIDGLYVGGSTGEAFLLSTEEKKQVLEIVAEEAKGKVKLIAQVGSVNTAEAQELAKYATELGYDAISA 105 (293)
T ss_pred HHHHHHHHHhcCCCCEEEECCCccccccCCHHHHHHHHHHHHHHhCCCCCEEecCCCCCHHHHHHHHHHHHHcCCCEEEE
Confidence 3444455555 5555444443 377899998888766 477888877754 456666677778888885432
Q ss_pred e----CCC-ChHHHHHHHHHhhCCCceEEEE
Q psy437 115 H----AGL-ADKLRNEVQMKWISNKVHLYNV 140 (184)
Q Consensus 115 h----~~~-p~~~r~~~~~~f~~~~~~v~va 140 (184)
. +.. +....+|..+....-+++|++.
T Consensus 106 ~~P~y~~~~~~~l~~~f~~va~a~~lPv~iY 136 (293)
T PRK04147 106 VTPFYYPFSFEEICDYYREIIDSADNPMIVY 136 (293)
T ss_pred eCCcCCCCCHHHHHHHHHHHHHhCCCCEEEE
Confidence 2 121 2345566666666556777776
No 352
>TIGR00696 wecB_tagA_cpsF bacterial polymer biosynthesis proteins, WecB/TagA/CpsF family. The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.
Probab=67.79 E-value=49 Score=24.79 Aligned_cols=69 Identities=10% Similarity=0.088 Sum_probs=41.7
Q ss_pred cEEEEeccHHHHHHHHHHHHhC--CCeeEEecCCCCHHHHHHHHHHHhccCceEEEEEeecccHHHHHHHHHhcCCcEEE
Q psy437 36 SGIVYCLTRKECDSVAAALAQE--RINAISYHAGLADKLRNEVQMKWISNKVHVGHWTVVSKECDSVAAALAQERINAIS 113 (184)
Q Consensus 36 ~~IIf~~tr~~~e~la~~L~~~--gi~~~~~hg~l~~~~R~~~~~~f~~g~~~vlVaT~tr~~~e~~a~gL~~~gi~~~v 113 (184)
+.-++-.+...++.+++.|++. |+.+..+||.+++++...+.+ .+...+-+.+.
T Consensus 50 ~vfllG~~~~v~~~~~~~l~~~yP~l~i~g~~g~f~~~~~~~i~~------------------------~I~~s~~dil~ 105 (177)
T TIGR00696 50 PIFLYGGKPDVLQQLKVKLIKEYPKLKIVGAFGPLEPEERKAALA------------------------KIARSGAGIVF 105 (177)
T ss_pred eEEEECCCHHHHHHHHHHHHHHCCCCEEEEECCCCChHHHHHHHH------------------------HHHHcCCCEEE
Confidence 3333446666777777777764 677666677776555444443 44445555566
Q ss_pred eeCCCChHHHHHHHHH
Q psy437 114 YHAGLADKLRNEVQMK 129 (184)
Q Consensus 114 ih~~~p~~~r~~~~~~ 129 (184)
+-.|.|+.+. ++++-
T Consensus 106 VglG~PkQE~-~~~~~ 120 (177)
T TIGR00696 106 VGLGCPKQEI-WMRNH 120 (177)
T ss_pred EEcCCcHhHH-HHHHh
Confidence 7778888764 44444
No 353
>TIGR02981 phageshock_pspE phage shock operon rhodanese PspE. Members of this very narrowly defined protein family are proteins active as rhodanese (EC 2.8.1.1) and found in the extended variants of the phage shock protein (psp operon) in Escherichia coli and a few closely related species. Note that the designation phage shock protein PspE has been applied, incorrectly, in many instances where the genome lacks the phage shock regulon entirely.
Probab=67.62 E-value=11 Score=25.39 Aligned_cols=36 Identities=11% Similarity=0.218 Sum_probs=27.8
Q ss_pred CCcEEEEeccHHHHHHHHHHHHhCCCeeEEecCCCC
Q psy437 34 GQSGIVYCLTRKECDSVAAALAQERINAISYHAGLA 69 (184)
Q Consensus 34 ~~~~IIf~~tr~~~e~la~~L~~~gi~~~~~hg~l~ 69 (184)
..+.++||.+-..+...+..|.+.|+.....-||+.
T Consensus 58 ~~~vvlyC~~G~rS~~aa~~L~~~G~~~v~~~GG~~ 93 (101)
T TIGR02981 58 NDTVKLYCNAGRQSGMAKDILLDMGYTHAENAGGIK 93 (101)
T ss_pred CCeEEEEeCCCHHHHHHHHHHHHcCCCeEEecCCHH
Confidence 446778999988888889999999987544447754
No 354
>TIGR03567 FMN_reduc_SsuE FMN reductase, SsuE family. Members of this protein family use NAD(P)H to reduce FMN and regenerate FMNH2. Members include the homodimeric, NAD(P)H-dependent enzyme SsuE from Escherichia coli, which serves as a partner to an FMNH2-dependent alkanesulfonate monooxygenase. It is induced by sulfate starvation. The NADH-dependent enzyme MsuE from Pseudomonas aeruginosa is outside the scope of this model (see model TIGR03566).
Probab=67.50 E-value=42 Score=24.69 Aligned_cols=17 Identities=18% Similarity=0.329 Sum_probs=11.4
Q ss_pred EeeCCCChHHHHHHHHH
Q psy437 113 SYHAGLADKLRNEVQMK 129 (184)
Q Consensus 113 vih~~~p~~~r~~~~~~ 129 (184)
+||+++|...++++-+.
T Consensus 75 ~Y~~sip~~LK~~iD~~ 91 (171)
T TIGR03567 75 VYKASYSGVLKALLDLL 91 (171)
T ss_pred cccCCCCHHHHHHHHhC
Confidence 57777777777766543
No 355
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=67.44 E-value=43 Score=24.38 Aligned_cols=45 Identities=20% Similarity=0.247 Sum_probs=37.1
Q ss_pred EEEEEee-------cccHHHHHHHHHhcCCcEEEeeCCCChHHHHHHHHHhh
Q psy437 87 VGHWTVV-------SKECDSVAAALAQERINAISYHAGLADKLRNEVQMKWI 131 (184)
Q Consensus 87 vlVaT~t-------r~~~e~~a~gL~~~gi~~~vih~~~p~~~r~~~~~~f~ 131 (184)
|+|||.+ ..+|..+-+.|+..+|+...+..++....++.+++...
T Consensus 2 VvlYttsl~giR~t~~~C~~ak~iL~~~~V~~~e~DVs~~~~~~~EL~~~~g 53 (147)
T cd03031 2 VVLYTTSLRGVRKTFEDCNNVRAILESFRVKFDERDVSMDSGFREELRELLG 53 (147)
T ss_pred EEEEEcCCcCCCCcChhHHHHHHHHHHCCCcEEEEECCCCHHHHHHHHHHhC
Confidence 6677765 78999999999999999888888888888888877643
No 356
>COG1587 HemD Uroporphyrinogen-III synthase [Coenzyme metabolism]
Probab=67.44 E-value=31 Score=27.09 Aligned_cols=74 Identities=8% Similarity=0.020 Sum_probs=49.2
Q ss_pred HHHHHHHHHhhcCCCcEEEEeccHHHHHHHHHHHHhCCCeeEE---ecCCCCHHHHHHHHHHHhccCceEEEEEeec
Q psy437 21 LKEVISLIKAKYSGQSGIVYCLTRKECDSVAAALAQERINAIS---YHAGLADKLRNEVQMKWISNKVHVGHWTVVS 94 (184)
Q Consensus 21 ~~~L~~~l~~~~~~~~~IIf~~tr~~~e~la~~L~~~gi~~~~---~hg~l~~~~R~~~~~~f~~g~~~vlVaT~tr 94 (184)
-+.|...+....+.++.+.+..+....+.+.+.|...|+.+.. |...-.........+.+..++..+|++|++.
T Consensus 109 ~~~l~~~l~~~~~~~~~vl~~~~~~~r~~l~~~L~~~G~~v~~~~~Y~~~~~~~~~~~~~~~~~~~~~d~v~ftS~~ 185 (248)
T COG1587 109 SEGLLEELPELLKGGKRVLILRGNGGREVLEEKLEERGAEVREVEVYRTEPPPLDEATLIELLKLGEVDAVVFTSSS 185 (248)
T ss_pred hHHHHHHhhhhccCCCeEEEEcCCCchHHHHHHHHhCCCEEEEEeeeeecCCCccHHHHHHHHHhCCCCEEEEeCHH
Confidence 3455666655423346677777777778999999999987544 4433333334445667888899999999943
No 357
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=67.00 E-value=35 Score=22.72 Aligned_cols=45 Identities=7% Similarity=0.004 Sum_probs=30.7
Q ss_pred CCCcEEEEec------cHHHHHHHHHHHHhCCCeeEEecCCCCHHHHHHHH
Q psy437 33 SGQSGIVYCL------TRKECDSVAAALAQERINAISYHAGLADKLRNEVQ 77 (184)
Q Consensus 33 ~~~~~IIf~~------tr~~~e~la~~L~~~gi~~~~~hg~l~~~~R~~~~ 77 (184)
...+.+||.. ++.-|..+.+.|.+.|++...+.=..+.+.+..+.
T Consensus 10 ~~~~Vvvf~kg~~~~~~Cp~C~~ak~lL~~~~i~~~~~di~~~~~~~~~l~ 60 (97)
T TIGR00365 10 KENPVVLYMKGTPQFPQCGFSARAVQILKACGVPFAYVNVLEDPEIRQGIK 60 (97)
T ss_pred ccCCEEEEEccCCCCCCCchHHHHHHHHHHcCCCEEEEECCCCHHHHHHHH
Confidence 3478999963 57888899999999998766554333344444433
No 358
>TIGR02313 HpaI-NOT-DapA 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents a subset of the DapA (dihydrodipicolinate synthase) family which has apparently evolved a separate function. The product of DapA, dihydrodipicolinate, results from the non-enzymatic cyclization and dehydration of 6-amino-2,4-dihydroxyhept-2-ene-1,7-dioic acid, which is different from the substrate of this reaction only in the presence of the amino group. In the absence of this amino group, and running the reaction in the opposite direction, the reaction corresponds to the HpaI aldolase component of the 4-hydroxyphenylacetic acid catabolism pathway (see TIGR02311). At present, this variant of DapA is found only in Oceanobacillus iheyensis HTE831 and Thermus thermophilus HB27. In both of these cases, one or more other DapA genes can be found and the one identified by this model is part of an operon for 4-hydroxyphenylacetic acid catabolism.
Probab=66.81 E-value=40 Score=27.31 Aligned_cols=94 Identities=11% Similarity=-0.034 Sum_probs=53.6
Q ss_pred HHHHHHHHHhCCCeeEEecC------CCCHHHHHHHHHHHh---ccCceEEEEEeec--ccHHHHHHHHHhcCCcEEEee
Q psy437 47 CDSVAAALAQERINAISYHA------GLADKLRNEVQMKWI---SNKVHVGHWTVVS--KECDSVAAALAQERINAISYH 115 (184)
Q Consensus 47 ~e~la~~L~~~gi~~~~~hg------~l~~~~R~~~~~~f~---~g~~~vlVaT~tr--~~~e~~a~gL~~~gi~~~vih 115 (184)
.+.+.+++...|+...+.-| .|+.+||.++++.+. .|+++|++.+.+- .++-.+++.-...|.++..+.
T Consensus 23 l~~lv~~~~~~Gv~gi~v~GstGE~~~Ls~~Er~~l~~~~~~~~~g~~pvi~gv~~~~t~~ai~~a~~A~~~Gad~v~v~ 102 (294)
T TIGR02313 23 LRELIEFQIEGGSHAISVGGTSGEPGSLTLEERKQAIENAIDQIAGRIPFAPGTGALNHDETLELTKFAEEAGADAAMVI 102 (294)
T ss_pred HHHHHHHHHHcCCCEEEECccCcccccCCHHHHHHHHHHHHHHhCCCCcEEEECCcchHHHHHHHHHHHHHcCCCEEEEc
Confidence 33444444455555444444 377899999988775 4778888666543 344455566667787753321
Q ss_pred ---CCCC--hHHHHHHHHHhhCC-CceEEEE
Q psy437 116 ---AGLA--DKLRNEVQMKWISN-KVHLYNV 140 (184)
Q Consensus 116 ---~~~p--~~~r~~~~~~f~~~-~~~v~va 140 (184)
|-.| +...+|.-..-..- +++|++.
T Consensus 103 pP~y~~~~~~~l~~~f~~ia~a~~~lpv~iY 133 (294)
T TIGR02313 103 VPYYNKPNQEALYDHFAEVADAVPDFPIIIY 133 (294)
T ss_pred CccCCCCCHHHHHHHHHHHHHhccCCCEEEE
Confidence 2222 33444554444444 5777765
No 359
>KOG0701|consensus
Probab=66.75 E-value=6.7 Score=39.09 Aligned_cols=92 Identities=14% Similarity=0.073 Sum_probs=71.2
Q ss_pred CcEEEEeccHHHHHHHHHHHHhCC-CeeEEecCCCC-----------HHHHHHHHHHHhccCceEEEEEeecccHHHHHH
Q psy437 35 QSGIVYCLTRKECDSVAAALAQER-INAISYHAGLA-----------DKLRNEVQMKWISNKVHVGHWTVVSKECDSVAA 102 (184)
Q Consensus 35 ~~~IIf~~tr~~~e~la~~L~~~g-i~~~~~hg~l~-----------~~~R~~~~~~f~~g~~~vlVaT~tr~~~e~~a~ 102 (184)
-++|+||..+..+-.+.+.+.+.. .....+-|.+. +..+.+++..|...+.++|++|. .+-.
T Consensus 293 l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~k~~~~~~~~~~~~vl~~~~~~~ln~L~~~~------~~~e 366 (1606)
T KOG0701|consen 293 LSGIIFVDQRYTAYVLLELLREIFSNDPLFVTGASGANLWKSFKNELELRQAEVLRRFHFHELNLLIATS------VLEE 366 (1606)
T ss_pred hhheeecccchHHHHHHHHHHHhhccCcceeeccccCccchhhHHHHHhhhHHHHHHHhhhhhhHHHHHH------HHHh
Confidence 578999999998888888887642 22223444332 12356788889999999999999 7778
Q ss_pred HHHhcCCcEEEeeCCCChHHHHHHHHHhhCC
Q psy437 103 ALAQERINAISYHAGLADKLRNEVQMKWISN 133 (184)
Q Consensus 103 gL~~~gi~~~vih~~~p~~~r~~~~~~f~~~ 133 (184)
|++.+-.. .+++++.|-..+.|+|...+..
T Consensus 367 ~~d~~~~~-~~~~~~~~~~~~~~vq~~~r~~ 396 (1606)
T KOG0701|consen 367 GVDVPKCN-LVVLFDAPTYYRSYVQKKGRAR 396 (1606)
T ss_pred hcchhhhh-hheeccCcchHHHHHHhhcccc
Confidence 89988888 9999999999999999985543
No 360
>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....
Probab=66.75 E-value=24 Score=20.78 Aligned_cols=52 Identities=15% Similarity=0.098 Sum_probs=35.1
Q ss_pred EEEe-ccHHHHHHHHHHHHhCCCeeEEecCCCCHHHHHHHHHHHhccCceEEE
Q psy437 38 IVYC-LTRKECDSVAAALAQERINAISYHAGLADKLRNEVQMKWISNKVHVGH 89 (184)
Q Consensus 38 IIf~-~tr~~~e~la~~L~~~gi~~~~~hg~l~~~~R~~~~~~f~~g~~~vlV 89 (184)
++|. ++...|....+.|.+.|++...+.=..+.+.+..+.+......++.++
T Consensus 2 ~vy~~~~C~~C~~~~~~L~~~~i~y~~~dv~~~~~~~~~l~~~~g~~~~P~v~ 54 (60)
T PF00462_consen 2 VVYTKPGCPYCKKAKEFLDEKGIPYEEVDVDEDEEAREELKELSGVRTVPQVF 54 (60)
T ss_dssp EEEESTTSHHHHHHHHHHHHTTBEEEEEEGGGSHHHHHHHHHHHSSSSSSEEE
T ss_pred EEEEcCCCcCHHHHHHHHHHcCCeeeEcccccchhHHHHHHHHcCCCccCEEE
Confidence 3454 678899999999999999887776555555565555554333444443
No 361
>COG1609 PurR Transcriptional regulators [Transcription]
Probab=66.74 E-value=71 Score=26.25 Aligned_cols=70 Identities=11% Similarity=0.036 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHhCCCeeEEecCCCCHHHHHHHHHHHhccCceEEEEEeecccHHHHHHHHHhcCCcEEEee
Q psy437 45 KECDSVAAALAQERINAISYHAGLADKLRNEVQMKWISNKVHVGHWTVVSKECDSVAAALAQERINAISYH 115 (184)
Q Consensus 45 ~~~e~la~~L~~~gi~~~~~hg~l~~~~R~~~~~~f~~g~~~vlVaT~tr~~~e~~a~gL~~~gi~~~vih 115 (184)
+...-+.+.+.+.|+.+.....+-+++.-...++.+....+..||.++ ....+.....|...+++++++.
T Consensus 75 ~i~~gi~~~~~~~gy~~~l~~~~~~~~~e~~~~~~l~~~~vdGiIi~~-~~~~~~~~~~l~~~~~P~V~i~ 144 (333)
T COG1609 75 EILKGIEEAAREAGYSLLLANTDDDPEKEREYLETLLQKRVDGLILLG-ERPNDSLLELLAAAGIPVVVID 144 (333)
T ss_pred HHHHHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHHcCCCEEEEec-CCCCHHHHHHHHhcCCCEEEEe
Confidence 345555666667777776666665666666666777777776666665 3333344455555566633333
No 362
>PRK10014 DNA-binding transcriptional repressor MalI; Provisional
Probab=66.35 E-value=68 Score=25.85 Aligned_cols=40 Identities=10% Similarity=-0.051 Sum_probs=16.2
Q ss_pred HHHhCCCeeEEecCCCCHHHHHHHHHHHhccCceEEEEEe
Q psy437 53 ALAQERINAISYHAGLADKLRNEVQMKWISNKVHVGHWTV 92 (184)
Q Consensus 53 ~L~~~gi~~~~~hg~l~~~~R~~~~~~f~~g~~~vlVaT~ 92 (184)
.+.+.|+.+..+..+.+.+.-...++.+....+..||.++
T Consensus 89 ~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~ 128 (342)
T PRK10014 89 ALEAQGRMVFLLQGGKDGEQLAQRFSTLLNQGVDGVVIAG 128 (342)
T ss_pred HHHHcCCEEEEEeCCCCHHHHHHHHHHHHhCCCCEEEEeC
Confidence 3334454444333333333333444444444444444433
No 363
>cd01540 PBP1_arabinose_binding Periplasmic L-arabinose-binding protein (ABP), a member of a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Periplasmic L-arabinose-binding protein (ABP), a member of a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. ABP is only involved in transport contrary to other related sugar-binding proteins such as the glucose/galactose-binding protein (GGBP) and the ribose-binding protein (RBP), both of which are involved in chemotaxis as well as transport. The periplasmic ABP consists of two alpha/beta globular domains connected by a three-stranded hinge, a Venus flytrap-like domain, which undergoes a transition from an open to a closed conformational state upon ligand binding. Moreover, ABP is homologous to the ligand-binding domain of eukaryotic receptors such as metabotropic glutamate receptor (mGluR) and DNA-binding transcriptional repressors such a
Probab=66.34 E-value=61 Score=25.28 Aligned_cols=70 Identities=6% Similarity=-0.080 Sum_probs=39.4
Q ss_pred HHHHHHHHHhCCCeeEEecCCCCHHHHHHHHHHHhccCceEEEEEeec-ccHHHHHHHHHhcCCcEEEeeCC
Q psy437 47 CDSVAAALAQERINAISYHAGLADKLRNEVQMKWISNKVHVGHWTVVS-KECDSVAAALAQERINAISYHAG 117 (184)
Q Consensus 47 ~e~la~~L~~~gi~~~~~hg~l~~~~R~~~~~~f~~g~~~vlVaT~tr-~~~e~~a~gL~~~gi~~~vih~~ 117 (184)
.+.+.+.+.+.|+.+..+-+. +.+.-...++.+....+..||..+.- ...+.+...+...|+++++++..
T Consensus 18 ~~gi~~~~~~~g~~~~~~~~~-~~~~~~~~i~~~~~~~~dgiii~~~~~~~~~~~~~~~~~~~iPvV~~~~~ 88 (289)
T cd01540 18 WKFAKKAAKEKGFTVVKIDVP-DGEKVLSAIDNLGAQGAKGFVICVPDVKLGPAIVAKAKAYNMKVVAVDDR 88 (289)
T ss_pred HHHHHHHHHHcCCEEEEccCC-CHHHHHHHHHHHHHcCCCEEEEccCchhhhHHHHHHHHhCCCeEEEecCC
Confidence 344455556677777766555 54444456666776666655554432 22334445566778875555433
No 364
>cd01541 PBP1_AraR Ligand-binding domain of DNA transcription repressor specific for arabinose (AraR) which is a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor specific for arabinose (AraR) which is a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of AraR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which i
Probab=66.17 E-value=59 Score=25.10 Aligned_cols=12 Identities=8% Similarity=-0.058 Sum_probs=5.4
Q ss_pred HHHHHHHhcCCc
Q psy437 99 SVAAALAQERIN 110 (184)
Q Consensus 99 ~~a~gL~~~gi~ 110 (184)
.+++.|-..|.+
T Consensus 111 ~~~~~l~~~G~~ 122 (273)
T cd01541 111 KATEYLIELGHR 122 (273)
T ss_pred HHHHHHHHcCCc
Confidence 334445444443
No 365
>smart00851 MGS MGS-like domain. This domain composes the whole protein of methylglyoxal synthetase and the domain is also found in Carbamoyl phosphate synthetase (CPS) where it forms a regulatory domain that binds to the allosteric effector ornithine. This family also includes inosicase. The known structures in this family show a common phosphate binding site PUBMED:10526357.
Probab=66.16 E-value=9.3 Score=24.95 Aligned_cols=43 Identities=9% Similarity=-0.024 Sum_probs=30.1
Q ss_pred HHHHHhCCCeeEEecCCCCHHHHHHHHHHHhccCceEEEEEeec
Q psy437 51 AAALAQERINAISYHAGLADKLRNEVQMKWISNKVHVGHWTVVS 94 (184)
Q Consensus 51 a~~L~~~gi~~~~~hg~l~~~~R~~~~~~f~~g~~~vlVaT~tr 94 (184)
+++|++.|+++...+..... .+..+++.+++|++..+|.|+..
T Consensus 23 a~~L~~~Gi~~~~~~~ki~~-~~~~i~~~i~~g~id~VIn~~~~ 65 (90)
T smart00851 23 AKFLREAGLPVKTLHPKVHG-GILAILDLIKNGEIDLVINTLYP 65 (90)
T ss_pred HHHHHHCCCcceeccCCCCC-CCHHHHHHhcCCCeEEEEECCCc
Confidence 56677789987534433321 23468899999999999998853
No 366
>COG1587 HemD Uroporphyrinogen-III synthase [Coenzyme metabolism]
Probab=65.65 E-value=64 Score=25.30 Aligned_cols=89 Identities=10% Similarity=-0.099 Sum_probs=54.6
Q ss_pred HHHHHhCCCeeEEecCCCCHHHHHHHHHHHhccCceEEEEEeecccHHHHHHHHHhcCCcE---EEeeCCCChHHHHHHH
Q psy437 51 AAALAQERINAISYHAGLADKLRNEVQMKWISNKVHVGHWTVVSKECDSVAAALAQERINA---ISYHAGLADKLRNEVQ 127 (184)
Q Consensus 51 a~~L~~~gi~~~~~hg~l~~~~R~~~~~~f~~g~~~vlVaT~tr~~~e~~a~gL~~~gi~~---~vih~~~p~~~r~~~~ 127 (184)
++.|++.|+.+..+-..-+.+.-...+..+..+..+|++-....+ .+.+..+|...|+++ .+|.--.|.......-
T Consensus 90 a~~l~~~G~~~~~~p~~~~~~~l~~~l~~~~~~~~~vl~~~~~~~-r~~l~~~L~~~G~~v~~~~~Y~~~~~~~~~~~~~ 168 (248)
T COG1587 90 AEALRKLGIKVDFIPEDGDSEGLLEELPELLKGGKRVLILRGNGG-REVLEEKLEERGAEVREVEVYRTEPPPLDEATLI 168 (248)
T ss_pred HHHHHHhCCCCCcCCCccchHHHHHHhhhhccCCCeEEEEcCCCc-hHHHHHHHHhCCCEEEEEeeeeecCCCccHHHHH
Confidence 344445566655554444555566666666665556776665433 378889999999885 4455555554433334
Q ss_pred HHhhCCCceEEEE
Q psy437 128 MKWISNKVHLYNV 140 (184)
Q Consensus 128 ~~f~~~~~~v~va 140 (184)
+.+..+.+.+++.
T Consensus 169 ~~~~~~~~d~v~f 181 (248)
T COG1587 169 ELLKLGEVDAVVF 181 (248)
T ss_pred HHHHhCCCCEEEE
Confidence 4677777777776
No 367
>cd06578 HemD Uroporphyrinogen-III synthase (HemD) catalyzes the asymmetrical cyclization of tetrapyrrole (linear) to uroporphyrinogen-III, the fourth step in the biosynthesis of heme. This ubiquitous enzyme is present in eukaryotes, bacteria and archaea. Mutations in the human uroporphyrinogen-III synthase gene cause congenital erythropoietic porphyria, a recessive inborn error of metabolism also known as Gunther disease.
Probab=65.61 E-value=42 Score=25.40 Aligned_cols=74 Identities=14% Similarity=0.063 Sum_probs=44.4
Q ss_pred hHHHHHHHHHhhcCCCcEEEEeccHHHHHHHHHHHHhCCCeeEE---ecCCCCHHHHHHHHHHHhccCceEEEEEeec
Q psy437 20 VLKEVISLIKAKYSGQSGIVYCLTRKECDSVAAALAQERINAIS---YHAGLADKLRNEVQMKWISNKVHVGHWTVVS 94 (184)
Q Consensus 20 k~~~L~~~l~~~~~~~~~IIf~~tr~~~e~la~~L~~~gi~~~~---~hg~l~~~~R~~~~~~f~~g~~~vlVaT~tr 94 (184)
-.+.|.+.+.+....+..|++.........+.+.|.+.|..+.. |.-.-.... ....+.+..+...+|++|+..
T Consensus 107 ~~~~L~~~i~~~~~~~~~il~~~g~~~~~~l~~~L~~~g~~v~~~~~Y~~~~~~~~-~~~~~~l~~~~~~~iiftS~~ 183 (239)
T cd06578 107 DSEGLLELLELQDGKGKRILRPRGGRAREDLAEALRERGAEVDEVEVYRTVPPDLD-AELLELLEEGAIDAVLFTSPS 183 (239)
T ss_pred CHHHHHHHHHhcCCCCCEEEEEcCcchhHHHHHHHHHCCCEEEEEEEEEEECCCCc-HHHHHHHHcCCCcEEEEeCHH
Confidence 35667777765322455666666666677889999888876433 332211111 334555666666788888743
No 368
>cd01524 RHOD_Pyr_redox Member of the Rhodanese Homology Domain superfamily. Included in this CD are the Lactococcus lactis NADH oxidase, Bacillus cereus NADH dehydrogenase, and Bacteroides thetaiotaomicron pyridine nucleotide-disulphide oxidoreductase, and similar rhodanese-like domains found C-terminal of the pyridine nucleotide-disulphide oxidoreductase (Pyr-redox) domain and the Pyr-redox dimerization domain.
Probab=65.41 E-value=11 Score=24.26 Aligned_cols=37 Identities=14% Similarity=0.109 Sum_probs=29.3
Q ss_pred cCceEEEEEeecccHHHHHHHHHhcCCcEEEeeCCCC
Q psy437 83 NKVHVGHWTVVSKECDSVAAALAQERINAISYHAGLA 119 (184)
Q Consensus 83 g~~~vlVaT~tr~~~e~~a~gL~~~gi~~~vih~~~p 119 (184)
.+.+++++|.+-..+...++.|...|+++.++.+|+.
T Consensus 50 ~~~~vvl~c~~g~~a~~~a~~L~~~G~~v~~l~GG~~ 86 (90)
T cd01524 50 KDKEIIVYCAVGLRGYIAARILTQNGFKVKNLDGGYK 86 (90)
T ss_pred CCCcEEEEcCCChhHHHHHHHHHHCCCCEEEecCCHH
Confidence 3456888887766788889999999988788998874
No 369
>cd06275 PBP1_PurR Ligand-binding domain of purine repressor, PurR, which functions as the master regulatory protein of de novo purine nucleotide biosynthesis in Escherichia coli. Ligand-binding domain of purine repressor, PurR, which functions as the master regulatory protein of de novo purine nucleotide biosynthesis in Escherichia coli. This dimeric PurR belongs to the LacI-GalR family of transcription regulators and is activated to bind to DNA operator sites by initially binding either of high affinity corepressors, hypoxanthine or guanine. PurR is composed of two functional domains: aan N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the purine transcription repressor undergoes a
Probab=65.21 E-value=61 Score=24.88 Aligned_cols=24 Identities=8% Similarity=-0.170 Sum_probs=15.0
Q ss_pred EEEeecccHHHHHHHHHhcCCcEE
Q psy437 89 HWTVVSKECDSVAAALAQERINAI 112 (184)
Q Consensus 89 VaT~tr~~~e~~a~gL~~~gi~~~ 112 (184)
|+++.....+.++..|-..|.+-.
T Consensus 97 V~~d~~~~~~~~~~~l~~~G~~~i 120 (269)
T cd06275 97 IQDNSEEGGYLATRHLIELGHRRI 120 (269)
T ss_pred EeeCcHHHHHHHHHHHHHCCCceE
Confidence 445545566777788877775533
No 370
>PF00581 Rhodanese: Rhodanese-like domain This Prosite entry represents a subset of this family.; InterPro: IPR001763 Rhodanese, a sulphurtransferase involved in cyanide detoxification (see IPR001307 from INTERPRO) shares evolutionary relationship with a large family of proteins [], including Cdc25 phosphatase catalytic domain. non-catalytic domains of eukaryotic dual-specificity MAPK-phosphatases. non-catalytic domains of yeast PTP-type MAPK-phosphatases. non-catalytic domains of yeast Ubp4, Ubp5, Ubp7. non-catalytic domains of mammalian Ubp-Y. Drosophila heat shock protein HSP-67BB. several bacterial cold-shock and phage shock proteins. plant senescence associated proteins. catalytic and non-catalytic domains of rhodanese (see IPR001307 from INTERPRO). Rhodanese has an internal duplication. This domain is found as a single copy in other proteins, including phosphatases and ubiquitin C-terminal hydrolases [].; PDB: 2J6P_D 2FSX_A 1UAR_A 1OKG_A 1GMX_A 1GN0_A 3NTD_B 3NTA_B 3NT6_A 1C25_A ....
Probab=65.07 E-value=12 Score=24.64 Aligned_cols=38 Identities=24% Similarity=0.336 Sum_probs=25.8
Q ss_pred CCCcEEEEeccHHHHHHHHHH-----HHhCCC-eeEEecCCCCH
Q psy437 33 SGQSGIVYCLTRKECDSVAAA-----LAQERI-NAISYHAGLAD 70 (184)
Q Consensus 33 ~~~~~IIf~~tr~~~e~la~~-----L~~~gi-~~~~~hg~l~~ 70 (184)
.....|+||.+.......+.. |...|+ ++..+.||+..
T Consensus 66 ~~~~iv~yc~~~~~~~~~~~~~~~~~l~~~g~~~v~~l~GG~~~ 109 (113)
T PF00581_consen 66 KDKDIVFYCSSGWRSGSAAAARVAWILKKLGFKNVYILDGGFEA 109 (113)
T ss_dssp TTSEEEEEESSSCHHHHHHHHHHHHHHHHTTTSSEEEETTHHHH
T ss_pred ccccceeeeecccccchhHHHHHHHHHHHcCCCCEEEecChHHH
Confidence 334567789655555555544 777788 78889998753
No 371
>cd06300 PBP1_ABC_sugar_binding_like_1 Periplasmic sugar-binding component of uncharacterized ABC-type transport systems that are members of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily. Periplasmic sugar-binding component of uncharacterized ABC-type transport systems that are members of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. Members of this group are predicted to be involved in the transport of sugar-containing molecules across cellular and organellar membranes; however their substrate specificity is not known in detail.
Probab=65.03 E-value=62 Score=24.95 Aligned_cols=10 Identities=20% Similarity=-0.004 Sum_probs=4.7
Q ss_pred HHHHHHHHHh
Q psy437 97 CDSVAAALAQ 106 (184)
Q Consensus 97 ~e~~a~gL~~ 106 (184)
...++..|-.
T Consensus 111 g~~~~~~l~~ 120 (272)
T cd06300 111 GKQGAEWLVK 120 (272)
T ss_pred HHHHHHHHHH
Confidence 3445555543
No 372
>cd06296 PBP1_CatR_like Ligand-binding domain of a LacI-like transcriptional regulator, CatR which is involved in catechol degradation. This group includes the ligand-binding domain of a LacI-like transcriptional regulator, CatR which is involved in catechol degradation. This group belongs to the the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=64.36 E-value=63 Score=24.79 Aligned_cols=20 Identities=5% Similarity=-0.202 Sum_probs=11.6
Q ss_pred EeecccHHHHHHHHHhcCCc
Q psy437 91 TVVSKECDSVAAALAQERIN 110 (184)
Q Consensus 91 T~tr~~~e~~a~gL~~~gi~ 110 (184)
++.+.....++..|-..|.+
T Consensus 99 ~d~~~~~~~a~~~l~~~g~~ 118 (270)
T cd06296 99 ATNWAGGLAATEHLLELGHR 118 (270)
T ss_pred eCcHHHHHHHHHHHHHcCCC
Confidence 33334566667777666655
No 373
>PRK13103 secA preprotein translocase subunit SecA; Reviewed
Probab=64.11 E-value=55 Score=31.12 Aligned_cols=66 Identities=9% Similarity=-0.079 Sum_probs=47.4
Q ss_pred HHHHHHHHhhcCCCcEEEEeccHHHHHHHHHHH----HhCCCeeEEecCCCCHHHHHHHHHHHhccCceEEEEEeec
Q psy437 22 KEVISLIKAKYSGQSGIVYCLTRKECDSVAAAL----AQERINAISYHAGLADKLRNEVQMKWISNKVHVGHWTVVS 94 (184)
Q Consensus 22 ~~L~~~l~~~~~~~~~IIf~~tr~~~e~la~~L----~~~gi~~~~~hg~l~~~~R~~~~~~f~~g~~~vlVaT~tr 94 (184)
..|.-++.. ..+.++.|.++|--.|.+=++++ ...|+++..+.+++++++|..++. .+|+++|.+-
T Consensus 112 A~l~a~l~a-l~G~~VhvvT~ndyLA~RD~e~m~~l~~~lGl~v~~i~~~~~~~err~~Y~------~dI~YGT~~e 181 (913)
T PRK13103 112 GTLAVYLNA-LSGKGVHVVTVNDYLARRDANWMRPLYEFLGLSVGIVTPFQPPEEKRAAYA------ADITYGTNNE 181 (913)
T ss_pred HHHHHHHHH-HcCCCEEEEeCCHHHHHHHHHHHHHHhcccCCEEEEECCCCCHHHHHHHhc------CCEEEEcccc
Confidence 334444443 36777888888866555555444 456999999999999999998886 6788888743
No 374
>KOG2340|consensus
Probab=64.02 E-value=14 Score=32.80 Aligned_cols=82 Identities=6% Similarity=-0.048 Sum_probs=60.5
Q ss_pred cCceEEEEEeecccHHHHHHHHHhcCCcEEEeeCCCChHHHHHHHHHhhCCCceEEEE---------EecCCccEEEecC
Q psy437 83 NKVHVGHWTVVSKECDSVAAALAQERINAISYHAGLADKLRNEVQMKWISNKVHLYNV---------WKIQWKRIIWIHS 153 (184)
Q Consensus 83 g~~~vlVaT~tr~~~e~~a~gL~~~gi~~~vih~~~p~~~r~~~~~~f~~~~~~v~va---------~D~~~vr~v~~~~ 153 (184)
+...+||+.++--+--++--+|+...+.-..||==-.++.-+..-.-|-.|...+++. +++..|+.|+-|.
T Consensus 551 t~s~~LiyIPSYfDFVRvRNy~K~e~i~F~~i~EYssk~~vsRAR~lF~qgr~~vlLyTER~hffrR~~ikGVk~vVfYq 630 (698)
T KOG2340|consen 551 TESGILIYIPSYFDFVRVRNYMKKEEISFVMINEYSSKSKVSRARELFFQGRKSVLLYTERAHFFRRYHIKGVKNVVFYQ 630 (698)
T ss_pred ccCceEEEecchhhHHHHHHHhhhhhcchHHHhhhhhHhhhhHHHHHHHhcCceEEEEehhhhhhhhheecceeeEEEec
Confidence 4567899999887777788888888887433543334444444444577788888887 3999999999999
Q ss_pred CCCCccccccc
Q psy437 154 LVLIKPDYLPP 164 (184)
Q Consensus 154 ~p~~~e~y~~~ 164 (184)
+|..+.-|---
T Consensus 631 pP~~P~FYsEi 641 (698)
T KOG2340|consen 631 PPNNPHFYSEI 641 (698)
T ss_pred CCCCcHHHHHH
Confidence 99988777543
No 375
>smart00450 RHOD Rhodanese Homology Domain. An alpha beta fold found duplicated in the Rhodanese protein. The the Cysteine containing enzymatically active version of the domain is also found in the CDC25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and stress proteins such as Senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions with a loss of the cysteine are also seen in Dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases. These are likely to play a role in protein interactions.
Probab=64.01 E-value=18 Score=22.94 Aligned_cols=38 Identities=11% Similarity=0.060 Sum_probs=30.0
Q ss_pred cCceEEEEEeecccHHHHHHHHHhcCCc-EEEeeCCCCh
Q psy437 83 NKVHVGHWTVVSKECDSVAAALAQERIN-AISYHAGLAD 120 (184)
Q Consensus 83 g~~~vlVaT~tr~~~e~~a~gL~~~gi~-~~vih~~~p~ 120 (184)
....+++++.+-..+..++..|...|.. +.++.+|++.
T Consensus 55 ~~~~iv~~c~~g~~a~~~~~~l~~~G~~~v~~l~GG~~~ 93 (100)
T smart00450 55 KDKPVVVYCRSGNRSAKAAWLLRELGFKNVYLLDGGYKE 93 (100)
T ss_pred CCCeEEEEeCCCcHHHHHHHHHHHcCCCceEEecCCHHH
Confidence 3457888887777788899999999988 6778888754
No 376
>cd01445 TST_Repeats Thiosulfate sulfurtransferases (TST) contain 2 copies of the Rhodanese Homology Domain. Only the second repeat contains the catalytically active Cys residue. The role of the 1st repeat is uncertain, but believed to be involved in protein interaction. This CD aligns the 1st and 2nd repeats.
Probab=63.91 E-value=22 Score=25.37 Aligned_cols=47 Identities=15% Similarity=-0.034 Sum_probs=31.3
Q ss_pred HHHHHHHhh--cCCCcEEEEecc---HHHHHHHHHHHHhCCCe-eEEecCCCC
Q psy437 23 EVISLIKAK--YSGQSGIVYCLT---RKECDSVAAALAQERIN-AISYHAGLA 69 (184)
Q Consensus 23 ~L~~~l~~~--~~~~~~IIf~~t---r~~~e~la~~L~~~gi~-~~~~hg~l~ 69 (184)
.+.+.+.+. .+..+.|+||.+ -..+-.++-.|+..|.+ +..|.||++
T Consensus 82 ~~~~~~~~~GI~~~~~vVvY~~~~~~g~~A~r~~~~l~~~G~~~v~ildGG~~ 134 (138)
T cd01445 82 EFAAMFEAKGIDLDKHLIATDGDDLGGFTACHIALAARLCGHPDVAILDGGFF 134 (138)
T ss_pred HHHHHHHHcCCCCCCeEEEECCCCCcchHHHHHHHHHHHcCCCCeEEeCCCHH
Confidence 445555432 145678889976 34566777778888876 678888865
No 377
>TIGR00674 dapA dihydrodipicolinate synthase. Dihydrodipicolinate synthase is a homotetrameric enzyme of lysine biosynthesis. E. coli has several paralogs closely related to dihydrodipicoline synthase (DapA), as well as the more distant N-acetylneuraminate lyase. In Pyrococcus horikoshii, the bidirectional best hit with E. coli is to an uncharacterized paralog of DapA, not DapA itself, and it is omitted from the seed. The putative members from the Chlamydias (pathogens with a parasitic metabolism) are easily the most divergent members of the multiple alignment.
Probab=63.82 E-value=75 Score=25.48 Aligned_cols=93 Identities=11% Similarity=-0.015 Sum_probs=56.8
Q ss_pred HHHHHHHHhCCCeeEEecC------CCCHHHHHHHHHHHhc---cCceEEEEEee--cccHHHHHHHHHhcCCcEEEee-
Q psy437 48 DSVAAALAQERINAISYHA------GLADKLRNEVQMKWIS---NKVHVGHWTVV--SKECDSVAAALAQERINAISYH- 115 (184)
Q Consensus 48 e~la~~L~~~gi~~~~~hg------~l~~~~R~~~~~~f~~---g~~~vlVaT~t--r~~~e~~a~gL~~~gi~~~vih- 115 (184)
..+.+++.+.|+.-.+.-| .|+.+||.++++.+.. |+++|++.+.+ -.++-.+|+.....|+++.++-
T Consensus 22 ~~~i~~l~~~Gv~Gi~~~GstGE~~~Ls~~Er~~~~~~~~~~~~~~~~vi~gv~~~s~~~~i~~a~~a~~~Gad~v~v~p 101 (285)
T TIGR00674 22 EKLIDFQIENGTDAIVVVGTTGESPTLSHEEHKKVIEFVVDLVNGRVPVIAGTGSNATEEAISLTKFAEDVGADGFLVVT 101 (285)
T ss_pred HHHHHHHHHcCCCEEEECccCcccccCCHHHHHHHHHHHHHHhCCCCeEEEeCCCccHHHHHHHHHHHHHcCCCEEEEcC
Confidence 3344444445555444433 3788999999887764 67888876653 3566667777778888854432
Q ss_pred ---CCC-ChHHHHHHHHHhhCCCceEEEE
Q psy437 116 ---AGL-ADKLRNEVQMKWISNKVHLYNV 140 (184)
Q Consensus 116 ---~~~-p~~~r~~~~~~f~~~~~~v~va 140 (184)
+.. +.....|..+....-.++|++.
T Consensus 102 P~y~~~~~~~i~~~~~~i~~~~~~pi~lY 130 (285)
T TIGR00674 102 PYYNKPTQEGLYQHFKAIAEEVDLPIILY 130 (285)
T ss_pred CcCCCCCHHHHHHHHHHHHhcCCCCEEEE
Confidence 222 2445566666655556777665
No 378
>smart00115 CASc Caspase, interleukin-1 beta converting enzyme (ICE) homologues. Cysteine aspartases that mediate programmed cell death (apoptosis). Caspases are synthesised as zymogens and activated by proteolysis of the peptide backbone adjacent to an aspartate. The resulting two subunits associate to form an (alpha)2(beta)2-tetramer which is the active enzyme. Activation of caspases can be mediated by other caspase homologues.
Probab=63.78 E-value=67 Score=25.18 Aligned_cols=49 Identities=4% Similarity=0.003 Sum_probs=39.4
Q ss_pred CCCcEEEEecc-----------HHHHHHHHHHHHhCCCeeEEecCCCCHHHHHHHHHHHhc
Q psy437 33 SGQSGIVYCLT-----------RKECDSVAAALAQERINAISYHAGLADKLRNEVQMKWIS 82 (184)
Q Consensus 33 ~~~~~IIf~~t-----------r~~~e~la~~L~~~gi~~~~~hg~l~~~~R~~~~~~f~~ 82 (184)
+.+-+||+++. ..+++.+++.|++.|+.+.. +-+++..+-.+.+++|.+
T Consensus 7 p~g~alII~n~~f~~~~~r~g~~~D~~~l~~~f~~lgF~V~~-~~dlt~~em~~~l~~~~~ 66 (241)
T smart00115 7 PRGLALIINNENFHSLPRRNGTDVDAENLTELFQSLGYEVHV-KNNLTAEEMLEELKEFAE 66 (241)
T ss_pred CCcEEEEEECccCCCCcCCCCcHHHHHHHHHHHHHCCCEEEE-ecCCCHHHHHHHHHHHHh
Confidence 44557777764 56899999999999998864 667898888888888876
No 379
>COG0329 DapA Dihydrodipicolinate synthase/N-acetylneuraminate lyase [Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=63.41 E-value=76 Score=25.86 Aligned_cols=94 Identities=11% Similarity=-0.037 Sum_probs=52.7
Q ss_pred HHHHHHHHHhCCCeeEEecC------CCCHHHHHHHHHHHh---ccCceEEEEEeec--ccHHHHHHHHHhcCCcEEEe-
Q psy437 47 CDSVAAALAQERINAISYHA------GLADKLRNEVQMKWI---SNKVHVGHWTVVS--KECDSVAAALAQERINAISY- 114 (184)
Q Consensus 47 ~e~la~~L~~~gi~~~~~hg------~l~~~~R~~~~~~f~---~g~~~vlVaT~tr--~~~e~~a~gL~~~gi~~~vi- 114 (184)
..++.++|.+.|+...+.-| .++.+||.++++... +|++++|+.|.+- .++=.+|+.-..-|+++..+
T Consensus 27 ~~~lv~~li~~Gv~gi~~~GttGE~~~Ls~eEr~~v~~~~v~~~~grvpviaG~g~~~t~eai~lak~a~~~Gad~il~v 106 (299)
T COG0329 27 LRRLVEFLIAAGVDGLVVLGTTGESPTLTLEERKEVLEAVVEAVGGRVPVIAGVGSNSTAEAIELAKHAEKLGADGILVV 106 (299)
T ss_pred HHHHHHHHHHcCCCEEEECCCCccchhcCHHHHHHHHHHHHHHHCCCCcEEEecCCCcHHHHHHHHHHHHhcCCCEEEEe
Confidence 34444555555554444433 267899999988876 4778888766655 45555566667777774321
Q ss_pred --eCCCChHHHHHHHH--HhhCCCceEEEE
Q psy437 115 --HAGLADKLRNEVQM--KWISNKVHLYNV 140 (184)
Q Consensus 115 --h~~~p~~~r~~~~~--~f~~~~~~v~va 140 (184)
-|.-|....-|.|= .-..-++++++.
T Consensus 107 ~PyY~k~~~~gl~~hf~~ia~a~~lPvilY 136 (299)
T COG0329 107 PPYYNKPSQEGLYAHFKAIAEAVDLPVILY 136 (299)
T ss_pred CCCCcCCChHHHHHHHHHHHHhcCCCEEEE
Confidence 13333333333333 333445665553
No 380
>COG0607 PspE Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
Probab=63.37 E-value=7.4 Score=25.83 Aligned_cols=37 Identities=22% Similarity=0.412 Sum_probs=30.7
Q ss_pred CCCcEEEEeccHHHHHHHHHHHHhCCCeeE-EecCCCC
Q psy437 33 SGQSGIVYCLTRKECDSVAAALAQERINAI-SYHAGLA 69 (184)
Q Consensus 33 ~~~~~IIf~~tr~~~e~la~~L~~~gi~~~-~~hg~l~ 69 (184)
+..+.++||.+-......+..|...|+... .+.||+.
T Consensus 60 ~~~~ivv~C~~G~rS~~aa~~L~~~G~~~~~~l~gG~~ 97 (110)
T COG0607 60 DDDPIVVYCASGVRSAAAAAALKLAGFTNVYNLDGGID 97 (110)
T ss_pred CCCeEEEEeCCCCChHHHHHHHHHcCCccccccCCcHH
Confidence 356788899998888999999999998876 6777764
No 381
>cd06322 PBP1_ABC_sugar_binding_like_12 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. This group includes the periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consist of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=62.61 E-value=68 Score=24.59 Aligned_cols=39 Identities=15% Similarity=0.061 Sum_probs=16.1
Q ss_pred HHhCCCeeEEecCCCCHHHHHHHHHHHhccCceEEEEEe
Q psy437 54 LAQERINAISYHAGLADKLRNEVQMKWISNKVHVGHWTV 92 (184)
Q Consensus 54 L~~~gi~~~~~hg~l~~~~R~~~~~~f~~g~~~vlVaT~ 92 (184)
+.+.|+.+..+.+..+.+.-.+.++.+.+..+..+|.++
T Consensus 25 ~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~vdgiii~~ 63 (267)
T cd06322 25 AKKQKVNLIVSIANQDLNKQLSDVEDFITKKVDAIVLSP 63 (267)
T ss_pred HHhcCCEEEEecCCCCHHHHHHHHHHHHHcCCCEEEEcC
Confidence 334444444433333333333344444444444444433
No 382
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=62.36 E-value=51 Score=23.97 Aligned_cols=44 Identities=18% Similarity=0.323 Sum_probs=34.9
Q ss_pred EEEEecc-------HHHHHHHHHHHHhCCCeeEEecCCCCHHHHHHHHHHH
Q psy437 37 GIVYCLT-------RKECDSVAAALAQERINAISYHAGLADKLRNEVQMKW 80 (184)
Q Consensus 37 ~IIf~~t-------r~~~e~la~~L~~~gi~~~~~hg~l~~~~R~~~~~~f 80 (184)
.+||+.| ...|..+.+.|+..+++...+.=.|+.+.+.++.+..
T Consensus 2 VvlYttsl~giR~t~~~C~~ak~iL~~~~V~~~e~DVs~~~~~~~EL~~~~ 52 (147)
T cd03031 2 VVLYTTSLRGVRKTFEDCNNVRAILESFRVKFDERDVSMDSGFREELRELL 52 (147)
T ss_pred EEEEEcCCcCCCCcChhHHHHHHHHHHCCCcEEEEECCCCHHHHHHHHHHh
Confidence 4677654 8899999999999999888887778877777766544
No 383
>PLN02723 3-mercaptopyruvate sulfurtransferase
Probab=62.31 E-value=20 Score=29.49 Aligned_cols=48 Identities=13% Similarity=0.070 Sum_probs=35.4
Q ss_pred HHHHHHHHhh--cCCCcEEEEeccHHHHHHHHHHHHhCCCe-eEEecCCCC
Q psy437 22 KEVISLIKAK--YSGQSGIVYCLTRKECDSVAAALAQERIN-AISYHAGLA 69 (184)
Q Consensus 22 ~~L~~~l~~~--~~~~~~IIf~~tr~~~e~la~~L~~~gi~-~~~~hg~l~ 69 (184)
+.|..++.+. .+..+.|+||.+-..+-.++-.|+..|++ +..|.|++.
T Consensus 255 ~el~~~~~~~gi~~~~~iv~yC~sG~~A~~~~~~L~~~G~~~v~~YdGs~~ 305 (320)
T PLN02723 255 EELKKRFEQEGISLDSPIVASCGTGVTACILALGLHRLGKTDVPVYDGSWT 305 (320)
T ss_pred HHHHHHHHhcCCCCCCCEEEECCcHHHHHHHHHHHHHcCCCCeeEeCCCHH
Confidence 4455555432 24567899999988888888888888986 778999865
No 384
>TIGR03865 PQQ_CXXCW PQQ-dependent catabolism-associated CXXCW motif protein. Members of this protein family have a CXXXCW motif, consistent with a possible role in redox cofactor binding. This protein family shows strong relationships by phylogenetic profiling and conserved gene neighborhoods with a transport system for alcohols metabolized by PQQ-dependent enzymes.
Probab=62.11 E-value=12 Score=27.51 Aligned_cols=37 Identities=16% Similarity=0.168 Sum_probs=28.2
Q ss_pred CCCcEEEEeccHH-HHHHHHHHHHhCCCe-eEEecCCCC
Q psy437 33 SGQSGIVYCLTRK-ECDSVAAALAQERIN-AISYHAGLA 69 (184)
Q Consensus 33 ~~~~~IIf~~tr~-~~e~la~~L~~~gi~-~~~~hg~l~ 69 (184)
+..+.|+||.+-. .+...+..|...|+. +..|.||+.
T Consensus 115 ~d~~IVvYC~~G~~~S~~aa~~L~~~G~~~V~~l~GG~~ 153 (162)
T TIGR03865 115 KDRPLVFYCLADCWMSWNAAKRALAYGYSNVYWYPDGTD 153 (162)
T ss_pred CCCEEEEEECCCCHHHHHHHHHHHhcCCcceEEecCCHH
Confidence 4567888999743 456678888889997 677899975
No 385
>PF02142 MGS: MGS-like domain This is a subfamily of this family; InterPro: IPR011607 This domain composes the whole protein of methylglyoxal synthetase and the domain is also found in carbamoyl phosphate synthetase (CPS) where it forms a regulatory domain that binds to the allosteric effector ornithine. The known structures in this domain show a common phosphate binding site []. ; PDB: 4A1O_A 3ZZM_A 1ZCZ_A 1M6V_C 1CS0_C 1C30_E 1C3O_G 1BXR_A 1T36_E 1A9X_A ....
Probab=62.02 E-value=16 Score=24.19 Aligned_cols=47 Identities=17% Similarity=-0.006 Sum_probs=31.0
Q ss_pred EEEEeecccHHHHHHHHHhcCCcE----EEeeCCCChHHHHHHHHHhhCCCceEEEE
Q psy437 88 GHWTVVSKECDSVAAALAQERINA----ISYHAGLADKLRNEVQMKWISNKVHLYNV 140 (184)
Q Consensus 88 lVaT~tr~~~e~~a~gL~~~gi~~----~vih~~~p~~~r~~~~~~f~~~~~~v~va 140 (184)
|+||. -.|+.|...|+++ ..++.+-+..-+..+.+..+++++.+++.
T Consensus 16 i~AT~------gTa~~L~~~Gi~~~~v~~~~~~~~~~~g~~~i~~~i~~~~IdlVIn 66 (95)
T PF02142_consen 16 IYATE------GTAKFLKEHGIEVTEVVNKIGEGESPDGRVQIMDLIKNGKIDLVIN 66 (95)
T ss_dssp EEEEH------HHHHHHHHTT--EEECCEEHSTG-GGTHCHHHHHHHHTTSEEEEEE
T ss_pred EEECh------HHHHHHHHcCCCceeeeeecccCccCCchhHHHHHHHcCCeEEEEE
Confidence 78999 7899999999983 33444422333346778888998887765
No 386
>PF04312 DUF460: Protein of unknown function (DUF460); InterPro: IPR007408 This is an archaeal protein of unknown function.
Probab=61.85 E-value=31 Score=24.93 Aligned_cols=56 Identities=18% Similarity=0.054 Sum_probs=0.0
Q ss_pred HHHHHHHHhccCceEEEEEeec---ccHHHHHHHHHhcCCcEEEeeCCCChHHHHHHHHHhh
Q psy437 73 RNEVQMKWISNKVHVGHWTVVS---KECDSVAAALAQERINAISYHAGLADKLRNEVQMKWI 131 (184)
Q Consensus 73 R~~~~~~f~~g~~~vlVaT~tr---~~~e~~a~gL~~~gi~~~vih~~~p~~~r~~~~~~f~ 131 (184)
|..+++...+-..++||||+.. ..++.+|+.++... ++=.-+||.+.+..+-+.+.
T Consensus 65 ~~evi~~I~~~G~PviVAtDV~p~P~~V~Kia~~f~A~l---y~P~~dlsveeK~~l~~~~~ 123 (138)
T PF04312_consen 65 RSEVIEWISEYGKPVIVATDVSPPPETVKKIARSFNAVL---YTPERDLSVEEKQELAREYS 123 (138)
T ss_pred HHHHHHHHHHcCCEEEEEecCCCCcHHHHHHHHHhCCcc---cCCCCcCCHHHHHHHHHhhC
No 387
>cd06320 PBP1_allose_binding Periplasmic allose-binding domain of bacterial transport systems that function as a primary receptor of active transport and chemotaxis. Periplasmic allose-binding domain of bacterial transport systems that function as a primary receptor of active transport and chemotaxis. The members of this group are belonging to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Like other periplasmic receptors of the ABC-type transport systems, the allose-binding protein consists of two alpha/beta domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding.
Probab=61.81 E-value=72 Score=24.62 Aligned_cols=11 Identities=9% Similarity=-0.172 Sum_probs=5.0
Q ss_pred cHHHHHHHHHh
Q psy437 96 ECDSVAAALAQ 106 (184)
Q Consensus 96 ~~e~~a~gL~~ 106 (184)
....+++.|-.
T Consensus 107 ~g~~~~~~l~~ 117 (275)
T cd06320 107 NGVRGAEWIID 117 (275)
T ss_pred HHHHHHHHHHH
Confidence 34444455543
No 388
>PF03358 FMN_red: NADPH-dependent FMN reductase; InterPro: IPR005025 NADPH-dependent FMN reductase (1.5.1.29 from EC) reduces FMN and also reduces riboflavin and FAD, although more slowly. Members of this entry catalyse the reaction NAD(P)H + FMN = NAD(P)(+) + FMNH(2).; PDB: 3SVL_B 3GFS_F 3GFQ_A 1NNI_1 2GSW_B 3GFR_D 1T0I_B 3D7N_A 2R97_A 3B6K_A ....
Probab=61.67 E-value=55 Score=23.16 Aligned_cols=67 Identities=16% Similarity=0.090 Sum_probs=38.6
Q ss_pred cHHHHHHHHHHHHhCCCeeEEecCCC---------------CHHHHHHHHHHHhccCceEEEEEeecccHHHHHHHHHhc
Q psy437 43 TRKECDSVAAALAQERINAISYHAGL---------------ADKLRNEVQMKWISNKVHVGHWTVVSKECDSVAAALAQE 107 (184)
Q Consensus 43 tr~~~e~la~~L~~~gi~~~~~hg~l---------------~~~~R~~~~~~f~~g~~~vlVaT~tr~~~e~~a~gL~~~ 107 (184)
|...++.+++.|.+.|+.+..++-.- .++.-.++.+++.+-+ -+|++|+
T Consensus 16 t~~l~~~~~~~l~~~g~e~~~i~l~~~~~p~~~~~~~~~~~~~d~~~~~~~~l~~aD-~iI~~sP--------------- 79 (152)
T PF03358_consen 16 TRKLAEAVAEQLEEAGAEVEVIDLADYPLPCCDGDFECPCYIPDDVQELYDKLKEAD-GIIFASP--------------- 79 (152)
T ss_dssp HHHHHHHHHHHHHHTTEEEEEEECTTSHCHHHHHHHHHTGCTSHHHHHHHHHHHHSS-EEEEEEE---------------
T ss_pred HHHHHHHHHHHHHHcCCEEEEEeccccchhhcccccccccCCcHHHHHHHhceecCC-eEEEeec---------------
Confidence 34556666666666677766664321 1122334445554433 2556665
Q ss_pred CCcEEEeeCCCChHHHHHHHHHh
Q psy437 108 RINAISYHAGLADKLRNEVQMKW 130 (184)
Q Consensus 108 gi~~~vih~~~p~~~r~~~~~~f 130 (184)
+|++++|...+.++.+-.
T Consensus 80 -----~y~~~~s~~lK~~lD~~~ 97 (152)
T PF03358_consen 80 -----VYNGSVSGQLKNFLDRLS 97 (152)
T ss_dssp -----EBTTBE-HHHHHHHHTHH
T ss_pred -----EEcCcCChhhhHHHHHhc
Confidence 678888888888877764
No 389
>PRK10703 DNA-binding transcriptional repressor PurR; Provisional
Probab=61.21 E-value=86 Score=25.27 Aligned_cols=69 Identities=13% Similarity=0.004 Sum_probs=43.6
Q ss_pred HHHHHHHHhCCCeeEEecCCCCHHHHHHHHHHHhccCceEEEEEeecccHHHHHHHHHh-cCCcEEEeeCC
Q psy437 48 DSVAAALAQERINAISYHAGLADKLRNEVQMKWISNKVHVGHWTVVSKECDSVAAALAQ-ERINAISYHAG 117 (184)
Q Consensus 48 e~la~~L~~~gi~~~~~hg~l~~~~R~~~~~~f~~g~~~vlVaT~tr~~~e~~a~gL~~-~gi~~~vih~~ 117 (184)
+-+.+.+.+.|+....+..+.+.+.-...++.+.+..+..||..++.. .+.....|.. .|+++..+..+
T Consensus 79 ~gi~~~~~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiii~~~~~-~~~~~~~l~~~~~iPvV~~d~~ 148 (341)
T PRK10703 79 EAVEKNCYQKGYTLILCNAWNNLEKQRAYLSMLAQKRVDGLLVMCSEY-PEPLLAMLEEYRHIPMVVMDWG 148 (341)
T ss_pred HHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHHcCCCEEEEecCCC-CHHHHHHHHhcCCCCEEEEecc
Confidence 344455556788887777766666666777788887787776655432 2233455555 68886555443
No 390
>cd00953 KDG_aldolase KDG (2-keto-3-deoxygluconate) aldolases found in archaea. This subfamily of enzymes is adapted for high thermostability and shows specificity for non-phosphorylated substrates. The enzyme catalyses the reversible aldol cleavage of 2-keto-3-dexoygluconate to pyruvate and glyceraldehyde, the third step of a modified non-phosphorylated Entner-Doudoroff pathway of glucose oxidation. KDG aldolase shows no significant sequence similarity to microbial 2-keto-3-deoxyphosphogluconate (KDPG) aldolases, and the enzyme shows no activity with glyceraldehyde 3-phosphate as substrate. The enzyme is a tetramer and a member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=60.51 E-value=86 Score=25.14 Aligned_cols=92 Identities=13% Similarity=-0.086 Sum_probs=53.9
Q ss_pred HHHHHHHHHhCCCeeEEecC------CCCHHHHHHHHHHHhccCceEEEEEe--ecccHHHHHHHHHhcCCcEEEe---e
Q psy437 47 CDSVAAALAQERINAISYHA------GLADKLRNEVQMKWISNKVHVGHWTV--VSKECDSVAAALAQERINAISY---H 115 (184)
Q Consensus 47 ~e~la~~L~~~gi~~~~~hg------~l~~~~R~~~~~~f~~g~~~vlVaT~--tr~~~e~~a~gL~~~gi~~~vi---h 115 (184)
.+.+.++|.+.|+.-.+.-| .|+.+||.++++.+.+-..+|++.+. +-.++-.+|+.....|.++..+ +
T Consensus 22 ~~~li~~l~~~Gv~Gl~~~GstGE~~~Lt~eEr~~l~~~~~~~~~~vi~gvg~~~~~~ai~~a~~a~~~Gad~v~v~~P~ 101 (279)
T cd00953 22 FKKHCENLISKGIDYVFVAGTTGLGPSLSFQEKLELLKAYSDITDKVIFQVGSLNLEESIELARAAKSFGIYAIASLPPY 101 (279)
T ss_pred HHHHHHHHHHcCCcEEEEcccCCCcccCCHHHHHHHHHHHHHHcCCEEEEeCcCCHHHHHHHHHHHHHcCCCEEEEeCCc
Confidence 44455555556665554444 37789999998888753334665554 3456666777778888885443 1
Q ss_pred CCC---ChHHHHHHHHHhhCCCceEEEE
Q psy437 116 AGL---ADKLRNEVQMKWISNKVHLYNV 140 (184)
Q Consensus 116 ~~~---p~~~r~~~~~~f~~~~~~v~va 140 (184)
|-. ++....|..+.-. .+++++.
T Consensus 102 y~~~~~~~~i~~yf~~v~~--~lpv~iY 127 (279)
T cd00953 102 YFPGIPEEWLIKYFTDISS--PYPTFIY 127 (279)
T ss_pred CCCCCCHHHHHHHHHHHHh--cCCEEEE
Confidence 222 2334444444433 6777765
No 391
>cd06313 PBP1_ABC_sugar_binding_like_5 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=60.44 E-value=79 Score=24.60 Aligned_cols=71 Identities=8% Similarity=-0.051 Sum_probs=40.1
Q ss_pred HHHHHHHHhCCCeeEEecCCCCHHHHHHHHHHHhccCceEEEEEeec-ccHHHHHHHHHhcCCcEEEeeCCC
Q psy437 48 DSVAAALAQERINAISYHAGLADKLRNEVQMKWISNKVHVGHWTVVS-KECDSVAAALAQERINAISYHAGL 118 (184)
Q Consensus 48 e~la~~L~~~gi~~~~~hg~l~~~~R~~~~~~f~~g~~~vlVaT~tr-~~~e~~a~gL~~~gi~~~vih~~~ 118 (184)
+.+.+.+++.|+.+..+-+.-+.+.-...++.+....+..||..+.. .....+-..+...++++.++....
T Consensus 19 ~gi~~~~~~~G~~~~~~~~~~d~~~~~~~i~~~~~~~vdgiii~~~~~~~~~~~i~~~~~~~iPvV~~~~~~ 90 (272)
T cd06313 19 QAADEAGKLLGVDVTWYGGALDAVKQVAAIENMASQGWDFIAVDPLGIGTLTEAVQKAIARGIPVIDMGTLI 90 (272)
T ss_pred HHHHHHHHHcCCEEEEecCCCCHHHHHHHHHHHHHcCCCEEEEcCCChHHhHHHHHHHHHCCCcEEEeCCCC
Confidence 44455555677777776655555555566667777666665554432 112233345566778755555443
No 392
>PRK05320 rhodanese superfamily protein; Provisional
Probab=60.43 E-value=13 Score=29.67 Aligned_cols=38 Identities=16% Similarity=0.466 Sum_probs=32.5
Q ss_pred CCCcEEEEeccHHHHHHHHHHHHhCCCe-eEEecCCCCH
Q psy437 33 SGQSGIVYCLTRKECDSVAAALAQERIN-AISYHAGLAD 70 (184)
Q Consensus 33 ~~~~~IIf~~tr~~~e~la~~L~~~gi~-~~~~hg~l~~ 70 (184)
+..+.++||.+=..++..+..|++.|+. +..+.||+..
T Consensus 174 kdk~IvvyC~~G~Rs~~Aa~~L~~~Gf~~V~~L~GGi~~ 212 (257)
T PRK05320 174 AGKTVVSFCTGGIRCEKAAIHMQEVGIDNVYQLEGGILK 212 (257)
T ss_pred CCCeEEEECCCCHHHHHHHHHHHHcCCcceEEeccCHHH
Confidence 4567889999988999999999999996 7788999854
No 393
>CHL00122 secA preprotein translocase subunit SecA; Validated
Probab=60.34 E-value=31 Score=32.48 Aligned_cols=57 Identities=9% Similarity=-0.019 Sum_probs=44.0
Q ss_pred cCceEEEEEeecccHHHHHHHHHhcCCcEEEeeCCC--ChHHHHHHHHHhhCCCceEEE
Q psy437 83 NKVHVGHWTVVSKECDSVAAALAQERINAISYHAGL--ADKLRNEVQMKWISNKVHLYN 139 (184)
Q Consensus 83 g~~~vlVaT~tr~~~e~~a~gL~~~gi~~~vih~~~--p~~~r~~~~~~f~~~~~~v~v 139 (184)
..-+|||.|.+=...|.++..|...|++..|+|+-- -..+-.-+-++.+.|.++|-.
T Consensus 423 ~grPVLIgT~SIe~SE~ls~~L~~~gi~h~vLNAk~~~~~~EA~IIA~AG~~G~VTIAT 481 (870)
T CHL00122 423 TGRPILIGTTTIEKSELLSQLLKEYRLPHQLLNAKPENVRRESEIVAQAGRKGSITIAT 481 (870)
T ss_pred cCCCEEEeeCCHHHHHHHHHHHHHcCCccceeeCCCccchhHHHHHHhcCCCCcEEEec
Confidence 345799999999999999999999999999999963 244555555666666655544
No 394
>PRK09271 flavodoxin; Provisional
Probab=60.27 E-value=53 Score=23.85 Aligned_cols=29 Identities=10% Similarity=0.041 Sum_probs=21.4
Q ss_pred EEEEe----ccHHHHHHHHHHHHhCCCeeEEec
Q psy437 37 GIVYC----LTRKECDSVAAALAQERINAISYH 65 (184)
Q Consensus 37 ~IIf~----~tr~~~e~la~~L~~~gi~~~~~h 65 (184)
.|+|. +|.+.|+.+++.|...|+.+..+.
T Consensus 4 ~IvY~S~tGnTe~~A~~ia~~l~~~g~~v~~~~ 36 (160)
T PRK09271 4 LLAYASLSGNTREVAREIEERCEEAGHEVDWVE 36 (160)
T ss_pred EEEEEcCCchHHHHHHHHHHHHHhCCCeeEEEe
Confidence 46665 567788888888888888776553
No 395
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=60.27 E-value=60 Score=23.17 Aligned_cols=71 Identities=17% Similarity=0.012 Sum_probs=43.1
Q ss_pred cChHHHHHHHHHhhc---CCCcEEEEeccHHHHHHHHHHHHhCC-----CeeEEecCCCCHHHHHHHHHHHhccCceEEE
Q psy437 18 KNVLKEVISLIKAKY---SGQSGIVYCLTRKECDSVAAALAQER-----INAISYHAGLADKLRNEVQMKWISNKVHVGH 89 (184)
Q Consensus 18 ~~k~~~L~~~l~~~~---~~~~~IIf~~tr~~~e~la~~L~~~g-----i~~~~~hg~l~~~~R~~~~~~f~~g~~~vlV 89 (184)
..|...+...+.... ...++++.++|...+.++...+.... .....+++... ......+.++...+++
T Consensus 35 sGKT~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~v~~ 110 (201)
T smart00487 35 SGKTLAALLPALEALKRGKGKRVLVLVPTRELAEQWAEELKKLGPSLGLKVVGLYGGDSK----REQLRKLESGKTDILV 110 (201)
T ss_pred CchhHHHHHHHHHHhcccCCCcEEEEeCCHHHHHHHHHHHHHHhccCCeEEEEEeCCcch----HHHHHHHhcCCCCEEE
Confidence 346654433332221 23678889999999998888887654 33444555432 3344455565557888
Q ss_pred EEe
Q psy437 90 WTV 92 (184)
Q Consensus 90 aT~ 92 (184)
+|.
T Consensus 111 ~t~ 113 (201)
T smart00487 111 TTP 113 (201)
T ss_pred eCh
Confidence 886
No 396
>cd06315 PBP1_ABC_sugar_binding_like_6 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=60.25 E-value=81 Score=24.67 Aligned_cols=70 Identities=13% Similarity=-0.032 Sum_probs=44.8
Q ss_pred HHHHHHHHHhCCCeeEEecCCCCHHHHHHHHHHHhccCceEEEEEeecccH-HHHHHHHHhcCCcEEEeeC
Q psy437 47 CDSVAAALAQERINAISYHAGLADKLRNEVQMKWISNKVHVGHWTVVSKEC-DSVAAALAQERINAISYHA 116 (184)
Q Consensus 47 ~e~la~~L~~~gi~~~~~hg~l~~~~R~~~~~~f~~g~~~vlVaT~tr~~~-e~~a~gL~~~gi~~~vih~ 116 (184)
...+.+.+.+.|+.+....++-+.+.-.+.++.+...++..||.+++..++ +.....+...++++.+++.
T Consensus 19 ~~gi~~~a~~~gy~~~~~~~~~~~~~~~~~i~~l~~~~vdgiil~~~~~~~~~~~~~~~~~~~iPvV~~d~ 89 (280)
T cd06315 19 GEGVREAAKAIGWNLRILDGRGSEAGQAAALNQAIALKPDGIVLGGVDAAELQAELELAQKAGIPVVGWHA 89 (280)
T ss_pred HHHHHHHHHHcCcEEEEECCCCCHHHHHHHHHHHHHcCCCEEEEcCCCHHHHHHHHHHHHHCCCCEEEecC
Confidence 444556666778887776666566555678888888888877777644332 2223445567888666654
No 397
>PF02525 Flavodoxin_2: Flavodoxin-like fold; InterPro: IPR003680 This family consists of a domain with a flavodoxin-like fold. The family includes bacterial and eukaryotic NAD(P)H dehydrogenase (quinone) 1.6.99.2 from EC. These enzymes catalyse the NAD(P)H-dependent two-electron reductions of quinones and protect cells against damage by free radicals and reactive oxygen species []. This enzyme uses a FAD cofactor. The equation for this reaction is NAD(P)H + acceptor = NAD(P)(+) + reduced acceptor. This enzyme is also involved in the bioactivation of prodrugs used in chemotherapy []. The family also includes acyl carrier protein phosphodiesterase 3.1.4.14 from EC. This enzyme converts holo-ACP to apo-ACP by hydrolytic cleavage of the phosphopantetheine residue from ACP []. This family is related to FMN_red IPR005025 from INTERPRO and Flavodoxin_1 IPR008254 from INTERPRO.; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0050662 coenzyme binding; PDB: 1T5B_B 1DXQ_B 2B3D_A 2Z9D_B 2Z9C_A 2Z98_A 2D5I_A 2Z9B_A 1TIK_A 1V4B_A ....
Probab=60.21 E-value=70 Score=23.92 Aligned_cols=22 Identities=9% Similarity=0.172 Sum_probs=18.9
Q ss_pred EeeCCCChHHHHHHHHHhhCCC
Q psy437 113 SYHAGLADKLRNEVQMKWISNK 134 (184)
Q Consensus 113 vih~~~p~~~r~~~~~~f~~~~ 134 (184)
++++++|...+.|+-+.|..|.
T Consensus 88 l~~~~~Pa~lK~~iD~v~~~g~ 109 (199)
T PF02525_consen 88 LYWFSMPAQLKGWIDRVFTPGF 109 (199)
T ss_dssp EBTTBC-HHHHHHHHHHSHTTT
T ss_pred ceecccChhHHHHHHHhCcCCe
Confidence 7999999999999999977665
No 398
>PF00258 Flavodoxin_1: Flavodoxin; InterPro: IPR008254 This domain is found in a number of proteins including flavodoxin and nitric-oxide synthase. Flavodoxins are electron-transfer proteins that function in various electron transport systems. They bind one FMN molecule, which serves as a redox-active prosthetic group [] and are functionally interchangeable with ferredoxins. They have been isolated from prokaryotes, cyanobacteria, and some eukaryotic algae. Nitric oxide synthase (1.14.13.39 from EC) produces nitric oxide from L-arginie and NADPH. Nitric oxide acts as a messenger molecule in the body.; GO: 0010181 FMN binding, 0016491 oxidoreductase activity; PDB: 2WC1_A 2FVX_A 2FOX_A 6NUL_A 1FVX_A 2FAX_A 1FLN_A 1FLA_A 4NLL_A 2FDX_A ....
Probab=59.97 E-value=43 Score=23.43 Aligned_cols=48 Identities=10% Similarity=-0.056 Sum_probs=29.8
Q ss_pred ccHHHHHHHHHHHHhCCCeeEEecCCCCHHHHHHHHHHHhccCceEEEEEeec
Q psy437 42 LTRKECDSVAAALAQERINAISYHAGLADKLRNEVQMKWISNKVHVGHWTVVS 94 (184)
Q Consensus 42 ~tr~~~e~la~~L~~~gi~~~~~hg~l~~~~R~~~~~~f~~g~~~vlVaT~tr 94 (184)
+|...|+.|++.|.+.|+.+..+.-...... ...+.. ...+++.|+|.
T Consensus 9 ~te~~A~~ia~~l~~~g~~~~~~~~~~~~~~----~~~~~~-~~~~i~~~sT~ 56 (143)
T PF00258_consen 9 NTEKMAEAIAEGLRERGVEVRVVDLDDFDDS----PSDLSE-YDLLIFGVSTY 56 (143)
T ss_dssp HHHHHHHHHHHHHHHTTSEEEEEEGGGSCHH----HHHHCT-TSEEEEEEEEE
T ss_pred hHHHHHHHHHHHHHHcCCceeeechhhhhhh----hhhhhh-hceeeEeeccc
Confidence 5778888899999989988766543322222 334443 33466777644
No 399
>TIGR00288 conserved hypothetical protein TIGR00288. This family of orthologs is restricted to but universal among the completed archaeal genomes so far. Eubacterial proteins showing at least local homology include slr1870 from Synechocystis PCC6803 and two proteins from Aquifex aeolicusr, none of which is characterized.
Probab=59.70 E-value=70 Score=23.73 Aligned_cols=94 Identities=11% Similarity=0.058 Sum_probs=64.7
Q ss_pred HHHHHHHHHhhcCCCcEEEEeccHHHHHHHHHHHHhCCCeeEEecCCCCHHHHHHHHHHHhccCceEEEEEeecccHHHH
Q psy437 21 LKEVISLIKAKYSGQSGIVYCLTRKECDSVAAALAQERINAISYHAGLADKLRNEVQMKWISNKVHVGHWTVVSKECDSV 100 (184)
Q Consensus 21 ~~~L~~~l~~~~~~~~~IIf~~tr~~~e~la~~L~~~gi~~~~~hg~l~~~~R~~~~~~f~~g~~~vlVaT~tr~~~e~~ 100 (184)
++.+.+.+.+.......-+|++-.. ...+.+.|...|+.....-|..+-.--..+++-.-++++..+|-.++-++=..+
T Consensus 43 ~~~i~~~ls~~G~i~~~R~Y~~a~a-~~~l~~~l~~~Gf~pv~~kG~~Dv~laIDame~~~~~~iD~~vLvSgD~DF~~L 121 (160)
T TIGR00288 43 LDEIREILSEYGDIKIGKVLLNQYA-SDKLIEAVVNQGFEPIIVAGDVDVRMAVEAMELIYNPNIDAVALVTRDADFLPV 121 (160)
T ss_pred HHHHHHHHHhcCCeEEEEEEechhc-cHHHHHHHHHCCceEEEecCcccHHHHHHHHHHhccCCCCEEEEEeccHhHHHH
Confidence 4666777755311223456776322 235678888899987666676665555566666657888888888888888899
Q ss_pred HHHHHhcCCcEEEee
Q psy437 101 AAALAQERINAISYH 115 (184)
Q Consensus 101 a~gL~~~gi~~~vih 115 (184)
+..|...|..+.++-
T Consensus 122 v~~lre~G~~V~v~g 136 (160)
T TIGR00288 122 INKAKENGKETIVIG 136 (160)
T ss_pred HHHHHHCCCEEEEEe
Confidence 999999999765554
No 400
>cd06321 PBP1_ABC_sugar_binding_like_11 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. This group includes the periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consist of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=59.69 E-value=79 Score=24.35 Aligned_cols=84 Identities=10% Similarity=-0.014 Sum_probs=39.6
Q ss_pred CcEEEEeccHHHHHHH---HHHHHhCCCeeEEecCCCCHHHHHHHHHHHhccCceEE------------EEEeecccHHH
Q psy437 35 QSGIVYCLTRKECDSV---AAALAQERINAISYHAGLADKLRNEVQMKWISNKVHVG------------HWTVVSKECDS 99 (184)
Q Consensus 35 ~~~IIf~~tr~~~e~l---a~~L~~~gi~~~~~hg~l~~~~R~~~~~~f~~g~~~vl------------VaT~tr~~~e~ 99 (184)
.-.++++.+..+.+.. .+.+...+.....+.+. +...-...++.+.+..++++ |.++.......
T Consensus 31 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~dgiIi~~~-~~~~~~~~i~~~~~~~ipvv~~~~~~~~~~~~V~~d~~~~g~~ 109 (271)
T cd06321 31 GVKVTVVSADYDLNKQVSQIDNFIAAKVDLILLNAV-DSKGIAPAVKRAQAAGIVVVAVDVAAEGADATVTTDNVQAGEI 109 (271)
T ss_pred CeEEEEccCCCCHHHHHHHHHHHHHhCCCEEEEeCC-ChhHhHHHHHHHHHCCCeEEEecCCCCCccceeeechHHHHHH
Confidence 3345555443333322 23334456666666553 22211233445544333333 34444456677
Q ss_pred HHHHHHhc--CCcEEEeeCCCC
Q psy437 100 VAAALAQE--RINAISYHAGLA 119 (184)
Q Consensus 100 ~a~gL~~~--gi~~~vih~~~p 119 (184)
++..|-.. |....++=++.+
T Consensus 110 ~~~~l~~~~~g~~~i~~i~g~~ 131 (271)
T cd06321 110 SCQYLADRLGGKGNVAILNGPP 131 (271)
T ss_pred HHHHHHHHhCCCceEEEEeCCC
Confidence 77777654 766344433434
No 401
>cd01529 4RHOD_Repeats Member of the Rhodanese Homology Domain superfamily. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. Only the second and most of the fourth repeats contain the putative catalytic Cys residue. This CD aligns the 1st , 2nd, 3rd, and 4th repeats.
Probab=59.55 E-value=14 Score=24.10 Aligned_cols=37 Identities=11% Similarity=-0.172 Sum_probs=28.7
Q ss_pred cCceEEEEEeecccHHHHHHHHHhcCCc-EEEeeCCCC
Q psy437 83 NKVHVGHWTVVSKECDSVAAALAQERIN-AISYHAGLA 119 (184)
Q Consensus 83 g~~~vlVaT~tr~~~e~~a~gL~~~gi~-~~vih~~~p 119 (184)
.+.+|+++|++-..+...+..|...|+. +.++.+|+.
T Consensus 55 ~~~~ivv~c~~g~~s~~~~~~l~~~G~~~v~~l~GG~~ 92 (96)
T cd01529 55 RATRYVLTCDGSLLARFAAQELLALGGKPVALLDGGTS 92 (96)
T ss_pred CCCCEEEEeCChHHHHHHHHHHHHcCCCCEEEeCCCHH
Confidence 3457888888878888889999888884 677777764
No 402
>PRK10653 D-ribose transporter subunit RbsB; Provisional
Probab=59.14 E-value=87 Score=24.69 Aligned_cols=69 Identities=7% Similarity=-0.024 Sum_probs=39.2
Q ss_pred HHHHHHHHHhCCCeeEEecCCCCHHHHHHHHHHHhccCceEEEEEeeccc-HHHHHHHHHhcCCcEEEee
Q psy437 47 CDSVAAALAQERINAISYHAGLADKLRNEVQMKWISNKVHVGHWTVVSKE-CDSVAAALAQERINAISYH 115 (184)
Q Consensus 47 ~e~la~~L~~~gi~~~~~hg~l~~~~R~~~~~~f~~g~~~vlVaT~tr~~-~e~~a~gL~~~gi~~~vih 115 (184)
...+.+.+.+.|+.+..+..+-+++.....++.+.+..+.++|.++...+ +......+...|+++..++
T Consensus 45 ~~~i~~~~~~~G~~~~~~~~~~d~~~~~~~~~~l~~~~~dgiii~~~~~~~~~~~l~~~~~~~ipvV~~~ 114 (295)
T PRK10653 45 KDGAQKEADKLGYNLVVLDSQNNPAKELANVQDLTVRGTKILLINPTDSDAVGNAVKMANQANIPVITLD 114 (295)
T ss_pred HHHHHHHHHHcCCeEEEecCCCCHHHHHHHHHHHHHcCCCEEEEcCCChHHHHHHHHHHHHCCCCEEEEc
Confidence 44445555667888776655545555556666676666665655554322 1233345556677754454
No 403
>cd06293 PBP1_LacI_like_11 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=59.13 E-value=80 Score=24.27 Aligned_cols=81 Identities=10% Similarity=0.007 Sum_probs=40.7
Q ss_pred CCcEEEEecc--HHHHHHHHHHHHhCCCeeEEecCCCCHHHHHHHHHHHhccCceE-------------EEEEeecccHH
Q psy437 34 GQSGIVYCLT--RKECDSVAAALAQERINAISYHAGLADKLRNEVQMKWISNKVHV-------------GHWTVVSKECD 98 (184)
Q Consensus 34 ~~~~IIf~~t--r~~~e~la~~L~~~gi~~~~~hg~l~~~~R~~~~~~f~~g~~~v-------------lVaT~tr~~~e 98 (184)
+...++++.. ........+.+...++....+.+.....+. +.+....+ .++ -|+++-.....
T Consensus 29 gy~v~~~~~~~~~~~~~~~i~~~~~~~~dgiii~~~~~~~~~--~~~~~~~~-~pvV~i~~~~~~~~~~~V~~d~~~~~~ 105 (269)
T cd06293 29 GLSLVLCATRNRPERELTYLRWLDTNHVDGLIFVTNRPDDGA--LAKLINSY-GNIVLVDEDVPGAKVPKVFCDNEQGGR 105 (269)
T ss_pred CCEEEEEeCCCCHHHHHHHHHHHHHCCCCEEEEeCCCCCHHH--HHHHHhcC-CCEEEECCCCCCCCCCEEEECCHHHHH
Confidence 4455555432 233344555666677777666553222221 11111111 222 35555556677
Q ss_pred HHHHHHHhcCCcEEE-eeCC
Q psy437 99 SVAAALAQERINAIS-YHAG 117 (184)
Q Consensus 99 ~~a~gL~~~gi~~~v-ih~~ 117 (184)
.++..|-..|.+-.. +++.
T Consensus 106 ~~~~~L~~~G~~~i~~i~~~ 125 (269)
T cd06293 106 LATRHLARAGHRRIAFVGGP 125 (269)
T ss_pred HHHHHHHHCCCceEEEEecC
Confidence 888888777776433 4444
No 404
>cd00408 DHDPS-like Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.
Probab=59.05 E-value=90 Score=24.80 Aligned_cols=93 Identities=11% Similarity=0.067 Sum_probs=55.8
Q ss_pred HHHHHHHHhCCCeeEEecC------CCCHHHHHHHHHHHhc---cCceEEEEEee--cccHHHHHHHHHhcCCcEEEeeC
Q psy437 48 DSVAAALAQERINAISYHA------GLADKLRNEVQMKWIS---NKVHVGHWTVV--SKECDSVAAALAQERINAISYHA 116 (184)
Q Consensus 48 e~la~~L~~~gi~~~~~hg------~l~~~~R~~~~~~f~~---g~~~vlVaT~t--r~~~e~~a~gL~~~gi~~~vih~ 116 (184)
+.+.++|.+.|+...+.-| .|+.+||.++++.+.+ +++++++.+.+ -.++-.+|+.....|+++.++.-
T Consensus 21 ~~~i~~l~~~Gv~gi~~~GstGE~~~ls~~Er~~l~~~~~~~~~~~~~vi~gv~~~~~~~~i~~a~~a~~~Gad~v~v~p 100 (281)
T cd00408 21 RRLVEFLIEAGVDGLVVLGTTGEAPTLTDEERKEVIEAVVEAVAGRVPVIAGVGANSTREAIELARHAEEAGADGVLVVP 100 (281)
T ss_pred HHHHHHHHHcCCCEEEECCCCcccccCCHHHHHHHHHHHHHHhCCCCeEEEecCCccHHHHHHHHHHHHHcCCCEEEECC
Confidence 3344444444555444433 3678999999888763 57788876654 34566777777888988544321
Q ss_pred ----C-CChHHHHHHHHHhhCCCceEEEE
Q psy437 117 ----G-LADKLRNEVQMKWISNKVHLYNV 140 (184)
Q Consensus 117 ----~-~p~~~r~~~~~~f~~~~~~v~va 140 (184)
. -++...+|..+.-..-.+++++.
T Consensus 101 P~y~~~~~~~~~~~~~~ia~~~~~pi~iY 129 (281)
T cd00408 101 PYYNKPSQEGIVAHFKAVADASDLPVILY 129 (281)
T ss_pred CcCCCCCHHHHHHHHHHHHhcCCCCEEEE
Confidence 1 12344455555555456677764
No 405
>cd01423 MGS_CPS_I_III Methylglyoxal synthase-like domain found in pyr1 and URA1-like carbamoyl phosphate synthetases (CPS), including ammonia-dependent CPS Type I, and glutamine-dependent CPS Type III. These are multidomain proteins, in which MGS is the C-terminal domain.
Probab=58.75 E-value=16 Score=25.06 Aligned_cols=77 Identities=10% Similarity=-0.001 Sum_probs=43.6
Q ss_pred CeEEEEEEcc-ChHHHHHHHHHhhcCCCcEEEEeccHHHHHHHHHHHHhCCCeeEEe--cCCCCHHHHHHHHHHHhccCc
Q psy437 9 NLKYEILPKK-NVLKEVISLIKAKYSGQSGIVYCLTRKECDSVAAALAQERINAISY--HAGLADKLRNEVQMKWISNKV 85 (184)
Q Consensus 9 Nl~y~v~~~~-~k~~~L~~~l~~~~~~~~~IIf~~tr~~~e~la~~L~~~gi~~~~~--hg~l~~~~R~~~~~~f~~g~~ 85 (184)
++++++.... ..+..+...|.+. +-.| | .|.. .++.|.+.|+++..+ ..+.+......+.+.+++|++
T Consensus 2 ~vlisv~~~dk~~~~~~a~~l~~~---G~~i-~-aT~g----Ta~~L~~~gi~~~~v~~~~~~~~~~~~~i~~~i~~~~i 72 (116)
T cd01423 2 GILISIGSYSKPELLPTAQKLSKL---GYKL-Y-ATEG----TADFLLENGIPVTPVAWPSEEPQNDKPSLRELLAEGKI 72 (116)
T ss_pred cEEEecCcccchhHHHHHHHHHHC---CCEE-E-EccH----HHHHHHHcCCCceEeeeccCCCCCCchhHHHHHHcCCc
Confidence 3555655542 2344445555431 2233 3 3444 455566778876554 222222223678888899999
Q ss_pred eEEEEEeec
Q psy437 86 HVGHWTVVS 94 (184)
Q Consensus 86 ~vlVaT~tr 94 (184)
+.+|-|++.
T Consensus 73 dlVIn~~~~ 81 (116)
T cd01423 73 DLVINLPSN 81 (116)
T ss_pred eEEEECCCC
Confidence 999998864
No 406
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=58.61 E-value=81 Score=24.12 Aligned_cols=121 Identities=11% Similarity=0.003 Sum_probs=60.8
Q ss_pred HHHHHHHHHHHhCCCeeEEecC-----------CCCHHHHHHHHHHHh-------ccCceEEEEEee-cccHHHHHHHHH
Q psy437 45 KECDSVAAALAQERINAISYHA-----------GLADKLRNEVQMKWI-------SNKVHVGHWTVV-SKECDSVAAALA 105 (184)
Q Consensus 45 ~~~e~la~~L~~~gi~~~~~hg-----------~l~~~~R~~~~~~f~-------~g~~~vlVaT~t-r~~~e~~a~gL~ 105 (184)
..|..+.+.|.+.|+.+..+.| |++.++|.+.+.+.- ....-+||++.+ +.+--..|+.+-
T Consensus 38 TiA~ale~~L~~~G~~~y~LDGDnvR~gL~~dLgFs~edR~eniRRvaevAkll~daG~iviva~ISP~r~~R~~aR~~~ 117 (197)
T COG0529 38 TIANALEEKLFAKGYHVYLLDGDNVRHGLNRDLGFSREDRIENIRRVAEVAKLLADAGLIVIVAFISPYREDRQMARELL 117 (197)
T ss_pred HHHHHHHHHHHHcCCeEEEecChhHhhcccCCCCCChHHHHHHHHHHHHHHHHHHHCCeEEEEEeeCccHHHHHHHHHHh
Confidence 3577788889999999988877 456778877655432 222234444433 233334455554
Q ss_pred hcCCcEEEeeCCCChHHHHHH-----HHHhhCCCceEEEEE----ecCCccEEEecCCCCCccccccccc
Q psy437 106 QERINAISYHAGLADKLRNEV-----QMKWISNKVHLYNVW----KIQWKRIIWIHSLVLIKPDYLPPIL 166 (184)
Q Consensus 106 ~~gi~~~vih~~~p~~~r~~~-----~~~f~~~~~~v~va~----D~~~vr~v~~~~~p~~~e~y~~~i~ 166 (184)
..| +..=+..+.|-..-..- -...++|.++=+..+ +.|.-.-|..-.--.+.++-+..|+
T Consensus 118 ~~~-~FiEVyV~~pl~vce~RDpKGLYkKAr~GeI~~fTGid~pYE~P~~Pel~l~t~~~~vee~v~~i~ 186 (197)
T COG0529 118 GEG-EFIEVYVDTPLEVCERRDPKGLYKKARAGEIKNFTGIDSPYEAPENPELHLDTDRNSVEECVEQIL 186 (197)
T ss_pred CcC-ceEEEEeCCCHHHHHhcCchHHHHHHHcCCCCCCcCCCCCCCCCCCCeeEeccccCCHHHHHHHHH
Confidence 443 22334445554433211 111445665555543 3343333333333334444444443
No 407
>cd06298 PBP1_CcpA_like Ligand-binding domain of the catabolite control protein A (CcpA), which functions as the major transcriptional regulator of carbon catabolite repression/regulation. Ligand-binding domain of the catabolite control protein A (CcpA), which functions as the major transcriptional regulator of carbon catabolite repression/regulation (CCR), a process in which enzymes necessary for the metabolism of alternative sugars are inhibited in the presence of glucose. In gram-positive bacteria, CCR is controlled by HPr, a phosphoenolpyruvate:sugar phsophotrasnferase system (PTS) and a transcriptional regulator CcpA. Moreover, CcpA can regulate sporulation and antibiotic resistance as well as play a role in virulence development of certain pathogens such as the group A streptococcus. The ligand binding domain of CcpA is a member of the LacI-GalR family of bacterial transcription regulators.
Probab=58.51 E-value=81 Score=24.11 Aligned_cols=23 Identities=9% Similarity=-0.054 Sum_probs=13.9
Q ss_pred ccHHHHHHHHHhcCCcE-EEeeCC
Q psy437 95 KECDSVAAALAQERINA-ISYHAG 117 (184)
Q Consensus 95 ~~~e~~a~gL~~~gi~~-~vih~~ 117 (184)
.....+++.|-..|.+- .++.+.
T Consensus 102 ~~~~~~~~~l~~~g~~~i~~l~~~ 125 (268)
T cd06298 102 KAAFEATELLIKNGHKKIAFISGP 125 (268)
T ss_pred HHHHHHHHHHHHcCCceEEEEeCC
Confidence 45677778887677553 334433
No 408
>PRK11784 tRNA 2-selenouridine synthase; Provisional
Probab=57.92 E-value=76 Score=26.55 Aligned_cols=48 Identities=21% Similarity=0.263 Sum_probs=34.8
Q ss_pred CCCcEEEEec-cHHHHHHHHHHHHhCCCeeEEecCCCCHHHHHHHHHHHh
Q psy437 33 SGQSGIVYCL-TRKECDSVAAALAQERINAISYHAGLADKLRNEVQMKWI 81 (184)
Q Consensus 33 ~~~~~IIf~~-tr~~~e~la~~L~~~gi~~~~~hg~l~~~~R~~~~~~f~ 81 (184)
+..+.+|||. .-..+..++..|...|+.+..+.||+..- |...++.+.
T Consensus 87 ~~~~ivvyC~rgG~RS~~aa~~L~~~G~~v~~L~GG~~aw-r~~~~~~~~ 135 (345)
T PRK11784 87 ANPRGLLYCWRGGLRSGSVQQWLKEAGIDVPRLEGGYKAY-RRFVIDTLE 135 (345)
T ss_pred CCCeEEEEECCCChHHHHHHHHHHHcCCCcEEEcCCHHHH-HHhhHHHHh
Confidence 4567899995 44557778889999999988999998764 344444443
No 409
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=57.92 E-value=73 Score=23.43 Aligned_cols=36 Identities=14% Similarity=0.139 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHhCCCeeEEecC-----------CCCHHHHHHHHHHH
Q psy437 45 KECDSVAAALAQERINAISYHA-----------GLADKLRNEVQMKW 80 (184)
Q Consensus 45 ~~~e~la~~L~~~gi~~~~~hg-----------~l~~~~R~~~~~~f 80 (184)
..|..+.+.|...|.++..+.| +.+.++|.+.+.++
T Consensus 17 TlA~~L~~~L~~~g~~~~~LDgD~lR~~l~~dl~fs~~dR~e~~rr~ 63 (156)
T PF01583_consen 17 TLARALERRLFARGIKVYLLDGDNLRHGLNADLGFSKEDREENIRRI 63 (156)
T ss_dssp HHHHHHHHHHHHTTS-EEEEEHHHHCTTTTTT--SSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcEEEecCcchhhccCCCCCCCHHHHHHHHHHH
Confidence 4577788888888988888755 34667888776664
No 410
>PF13245 AAA_19: Part of AAA domain
Probab=57.52 E-value=27 Score=22.17 Aligned_cols=39 Identities=21% Similarity=0.272 Sum_probs=27.6
Q ss_pred EccChHHHHHHHHHhhc-----CCCcEEEEeccHHHHHHHHHHH
Q psy437 16 PKKNVLKEVISLIKAKY-----SGQSGIVYCLTRKECDSVAAAL 54 (184)
Q Consensus 16 ~~~~k~~~L~~~l~~~~-----~~~~~IIf~~tr~~~e~la~~L 54 (184)
+...|...+...+.... .+.+.++.++|+..++.+.+.|
T Consensus 19 pGtGKT~~~~~~i~~l~~~~~~~~~~vlv~a~t~~aa~~l~~rl 62 (76)
T PF13245_consen 19 PGTGKTTTLAARIAELLAARADPGKRVLVLAPTRAAADELRERL 62 (76)
T ss_pred CCCCHHHHHHHHHHHHHHHhcCCCCeEEEECCCHHHHHHHHHHH
Confidence 34457766666554332 1556788899999999999998
No 411
>cd06273 PBP1_GntR_like_1 This group includes the ligand-binding domain of putative DNA transcription repressors which are highly similar to that of the repressor specific for gluconate (GntR), a member of the LacI-GalR family of bacterial transcription regulators. This group includes the ligand-binding domain of putative DNA transcription repressors which are highly similar to that of the repressor specific for gluconate (GntR), a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational
Probab=57.38 E-value=85 Score=24.02 Aligned_cols=25 Identities=8% Similarity=-0.144 Sum_probs=14.2
Q ss_pred cccHHHHHHHHHhcCCcE-EEeeCCC
Q psy437 94 SKECDSVAAALAQERINA-ISYHAGL 118 (184)
Q Consensus 94 r~~~e~~a~gL~~~gi~~-~vih~~~ 118 (184)
+.....++..|-..|.+- .++++..
T Consensus 101 ~~~~~~~~~~l~~~g~~~i~~i~~~~ 126 (268)
T cd06273 101 REAGRLAARHLIALGHRRIAMIFGPT 126 (268)
T ss_pred HHHHHHHHHHHHHCCCCeEEEEeccc
Confidence 345667777776666553 4454443
No 412
>PF02698 DUF218: DUF218 domain; InterPro: IPR003848 This domain of unknown function is found in several uncharacterised proteins.; PDB: 3CA8_A.
Probab=57.09 E-value=38 Score=24.19 Aligned_cols=75 Identities=13% Similarity=0.034 Sum_probs=37.3
Q ss_pred hHHHHHHHHHhhcCCCcEEEEec------cHHHHHHHHHHHHhCCCeeEEec---CCCCHHHHHHHHHHHhc-c-CceEE
Q psy437 20 VLKEVISLIKAKYSGQSGIVYCL------TRKECDSVAAALAQERINAISYH---AGLADKLRNEVQMKWIS-N-KVHVG 88 (184)
Q Consensus 20 k~~~L~~~l~~~~~~~~~IIf~~------tr~~~e~la~~L~~~gi~~~~~h---g~l~~~~R~~~~~~f~~-g-~~~vl 88 (184)
+++..++++++ ...+-|+++- ....++.+.+.|.+.|++...+. ...+..+=......+.. . --+++
T Consensus 25 R~~~a~~L~~~--g~~~~il~SGg~~~~~~~~ea~~~~~~l~~~gvp~~~I~~e~~s~~T~ena~~~~~~~~~~~~~~ii 102 (155)
T PF02698_consen 25 RLDEAARLYKA--GYAPRILFSGGYGHGDGRSEAEAMRDYLIELGVPEERIILEPKSTNTYENARFSKRLLKERGWQSII 102 (155)
T ss_dssp HHHHHHHHHH---HHT--EEEE--SSTTHTS-HHHHHHHHHHHT---GGGEEEE----SHHHHHHHHHHHHHT-SSS-EE
T ss_pred HHHHHHHHHhc--CCCCeEEECCCCCCCCCCCHHHHHHHHHHhcccchheeEccCCCCCHHHHHHHHHHHHHhhcCCeEE
Confidence 66777777765 3456688886 67899999999999898743321 22333222222333333 2 24788
Q ss_pred EEEeeccc
Q psy437 89 HWTVVSKE 96 (184)
Q Consensus 89 VaT~tr~~ 96 (184)
|.|+..+.
T Consensus 103 lVT~~~H~ 110 (155)
T PF02698_consen 103 LVTSPYHM 110 (155)
T ss_dssp EE--CCCH
T ss_pred EECCHHHH
Confidence 88888764
No 413
>cd00532 MGS-like MGS-like domain. This domain composes the whole protein of methylglyoxal synthetase, which catalyzes the enolization of dihydroxyacetone phosphate (DHAP) to produce methylglyoxal. The family also includes the C-terminal domain in carbamoyl phosphate synthetase (CPS) where it catalyzes the last phosphorylation of a coaboxyphosphate intermediate to form the product carbamoyl phosphate and may also play a regulatory role. This family also includes inosine monophosphate cyclohydrolase. The known structures in this family show a common phosphate binding site.
Probab=56.88 E-value=60 Score=22.08 Aligned_cols=74 Identities=11% Similarity=-0.011 Sum_probs=0.0
Q ss_pred eEEEEEEccChHHHHHHHHHhhcCCCcEEEEeccHHHHHHHHHHHHhCCCeeEEecCCCCHHHHHHHHHHHhc-cCceEE
Q psy437 10 LKYEILPKKNVLKEVISLIKAKYSGQSGIVYCLTRKECDSVAAALAQERINAISYHAGLADKLRNEVQMKWIS-NKVHVG 88 (184)
Q Consensus 10 l~y~v~~~~~k~~~L~~~l~~~~~~~~~IIf~~tr~~~e~la~~L~~~gi~~~~~hg~l~~~~R~~~~~~f~~-g~~~vl 88 (184)
+++++..... ..+..+.+.....+-.|+-+ +-.+++|++.|+++..+... +...+..+.+.+++ |++..+
T Consensus 2 i~isv~d~~K--~~~~~~a~~l~~~G~~i~AT------~gTa~~L~~~Gi~~~~v~~~-~~~g~~~i~~~i~~~g~idlV 72 (112)
T cd00532 2 VFLSVSDHVK--AMLVDLAPKLSSDGFPLFAT------GGTSRVLADAGIPVRAVSKR-HEDGEPTVDAAIAEKGKFDVV 72 (112)
T ss_pred EEEEEEcccH--HHHHHHHHHHHHCCCEEEEC------cHHHHHHHHcCCceEEEEec-CCCCCcHHHHHHhCCCCEEEE
Q ss_pred EEEe
Q psy437 89 HWTV 92 (184)
Q Consensus 89 VaT~ 92 (184)
|.|+
T Consensus 73 In~~ 76 (112)
T cd00532 73 INLR 76 (112)
T ss_pred EEcC
No 414
>cd06268 PBP1_ABC_transporter_LIVBP_like Periplasmic binding domain of ATP-binding cassette transporter-like systems that belong to the type I periplasmic binding fold protein superfamily. Periplasmic binding domain of ATP-binding cassette transporter-like systems that belong to the type I periplasmic binding fold protein superfamily. They are mostly present in archaea and eubacteria, and are primarily involved in scavenging solutes from the environment. ABC-type transporters couple ATP hydrolysis with the uptake and efflux of a wide range of substrates across bacterial membranes, including amino acids, peptides, lipids and sterols, and various drugs. These systems are comprised of transmembrane domains, nucleotide binding domains, and in most bacterial uptake systems, periplasmic binding proteins (PBPs) which transfer the ligand to the extracellular gate of the transmembrane domains. These PBPs bind their substrates selectively and with high affinity. Members of this group include ABC
Probab=56.71 E-value=88 Score=23.97 Aligned_cols=114 Identities=7% Similarity=-0.072 Sum_probs=59.4
Q ss_pred CCeEEEEEEccChHHHHHHHHHhhcCCCc-EEEEecc---HHHHHHHHHHHHhCCCeeEEecC-CCCHHHHHHHHHHHhc
Q psy437 8 ANLKYEILPKKNVLKEVISLIKAKYSGQS-GIVYCLT---RKECDSVAAALAQERINAISYHA-GLADKLRNEVQMKWIS 82 (184)
Q Consensus 8 ~Nl~y~v~~~~~k~~~L~~~l~~~~~~~~-~IIf~~t---r~~~e~la~~L~~~gi~~~~~hg-~l~~~~R~~~~~~f~~ 82 (184)
+|+++.......-...+.+++.+.....+ ++|+-+. ...++.+...+.+.|+++..... .....+=...+.+++.
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~l~~ 188 (298)
T cd06268 109 PYVFRTAPSDAQQAAALADYLAEKGKVKKVAIIYDDYAYGRGLAAAFREALKKLGGEVVAEETYPPGATDFSPLIAKLKA 188 (298)
T ss_pred ceEEEcccCcHHHHHHHHHHHHHhcCCCEEEEEEcCCchhHHHHHHHHHHHHHcCCEEEEEeccCCCCccHHHHHHHHHh
Confidence 44444333333345566677765421223 3333332 33455556666777876543211 1111223345555565
Q ss_pred cCceEEEEEeecccHHHHHHHHHhcCCcEEEeeCCCChH
Q psy437 83 NKVHVGHWTVVSKECDSVAAALAQERINAISYHAGLADK 121 (184)
Q Consensus 83 g~~~vlVaT~tr~~~e~~a~gL~~~gi~~~vih~~~p~~ 121 (184)
....++++...-.++..+.+.|...|++..++..+....
T Consensus 189 ~~~~~vi~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 227 (298)
T cd06268 189 AGPDAVFLAGYGGDAALFLKQAREAGLKVPIVGGDGAAA 227 (298)
T ss_pred cCCCEEEEccccchHHHHHHHHHHcCCCCcEEecCccCC
Confidence 555566666554677777888888887655555554433
No 415
>cd01523 RHOD_Lact_B Member of the Rhodanese Homology Domain superfamily. This CD includes predicted proteins with rhodanese-like domains found N-terminal of the metallo-beta-lactamase domain.
Probab=56.63 E-value=19 Score=23.63 Aligned_cols=36 Identities=17% Similarity=0.095 Sum_probs=28.5
Q ss_pred CceEEEEEeecccHHHHHHHHHhcCCcEEEeeCCCC
Q psy437 84 KVHVGHWTVVSKECDSVAAALAQERINAISYHAGLA 119 (184)
Q Consensus 84 ~~~vlVaT~tr~~~e~~a~gL~~~gi~~~vih~~~p 119 (184)
..+|+++|.+-.....+|..|...|+++..+.+|+.
T Consensus 61 ~~~ivv~C~~G~rs~~aa~~L~~~G~~~~~l~GG~~ 96 (100)
T cd01523 61 DQEVTVICAKEGSSQFVAELLAERGYDVDYLAGGMK 96 (100)
T ss_pred CCeEEEEcCCCCcHHHHHHHHHHcCceeEEeCCcHH
Confidence 456888888767788899999999998666777764
No 416
>cd06319 PBP1_ABC_sugar_binding_like_10 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=56.46 E-value=90 Score=24.02 Aligned_cols=67 Identities=15% Similarity=0.012 Sum_probs=34.8
Q ss_pred HHHHHHHhCCCeeEEecCCCCHHHHHHHHHHHhccCceEEEEEeeccc-HHHHHHHHHhcCCcEEEee
Q psy437 49 SVAAALAQERINAISYHAGLADKLRNEVQMKWISNKVHVGHWTVVSKE-CDSVAAALAQERINAISYH 115 (184)
Q Consensus 49 ~la~~L~~~gi~~~~~hg~l~~~~R~~~~~~f~~g~~~vlVaT~tr~~-~e~~a~gL~~~gi~~~vih 115 (184)
.+...+++.|+.+..+.+.-+.+.....++.+.+..+..+|..+.... ...+...+...|+++.+++
T Consensus 20 ~i~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~~~dgiii~~~~~~~~~~~l~~~~~~~ipvV~~~ 87 (277)
T cd06319 20 GVKSKAKALGYDAVELSAENSAKKELENLRTAIDKGVSGIIISPTNSSAAVTLLKLAAQAKIPVVIAD 87 (277)
T ss_pred HHHHHHHhcCCeEEEecCCCCHHHHHHHHHHHHhcCCCEEEEcCCchhhhHHHHHHHHHCCCCEEEEe
Confidence 334444556777666665555544445555666556665554443222 2233344556677644444
No 417
>cd01530 Cdc25 Cdc25 phosphatases are members of the Rhodanese Homology Domain superfamily. They activate the cell division kinases throughout the cell cycle progression. Cdc25 phosphatases dephosphorylate phosphotyrosine and phosphothreonine residues, in order to activate their Cdk/cyclin substrates. Cdc25A phosphatase functions to regulate S phase entry and Cdc25B is required for G2/M phase transition of the cell cycle. The Cdc25 domain binds oxyanions at the catalytic site and has the signature motif (H/YCxxxxxR).
Probab=56.45 E-value=16 Score=25.39 Aligned_cols=37 Identities=16% Similarity=0.127 Sum_probs=26.3
Q ss_pred CCCcEEEEec-cHHHHHHHHHHHHhC------------CC-eeEEecCCCC
Q psy437 33 SGQSGIVYCL-TRKECDSVAAALAQE------------RI-NAISYHAGLA 69 (184)
Q Consensus 33 ~~~~~IIf~~-tr~~~e~la~~L~~~------------gi-~~~~~hg~l~ 69 (184)
+..+.|+||. +-..+...+..|... |+ ++..+.||+.
T Consensus 67 ~~~~vv~yC~~sg~rs~~aa~~L~~~~~~~~~~~~~~~g~~~v~~L~GG~~ 117 (121)
T cd01530 67 KRRVLIFHCEFSSKRGPRMARHLRNLDRELNSNRYPLLYYPEIYILEGGYK 117 (121)
T ss_pred CCCEEEEECCCccccHHHHHHHHHHHhhhhccccCCCCCCCeEEEEcChhH
Confidence 3456788996 766677777787763 65 5777888875
No 418
>KOG0391|consensus
Probab=55.97 E-value=55 Score=32.37 Aligned_cols=93 Identities=11% Similarity=0.099 Sum_probs=68.7
Q ss_pred eeEEecCCCCHHHHHHHHHHHhccCceEEEEEeecccHHHHHHHHHhcCCcEEEeeCCCChHHHHHHHHHhhCCCceEEE
Q psy437 60 NAISYHAGLADKLRNEVQMKWISNKVHVGHWTVVSKECDSVAAALAQERINAISYHAGLADKLRNEVQMKWISNKVHLYN 139 (184)
Q Consensus 60 ~~~~~hg~l~~~~R~~~~~~f~~g~~~vlVaT~tr~~~e~~a~gL~~~gi~~~vih~~~p~~~r~~~~~~f~~~~~~v~v 139 (184)
+..-|..|.= +.-.-++++++...-++||+|---++.+.+-.-|..+|.-.+-+-+.-.-..|..+++.|-.++ +|.|
T Consensus 1253 rLiqyDcGKL-QtLAiLLqQLk~eghRvLIfTQMtkmLDVLeqFLnyHgylY~RLDg~t~vEqRQaLmerFNaD~-RIfc 1330 (1958)
T KOG0391|consen 1253 RLIQYDCGKL-QTLAILLQQLKSEGHRVLIFTQMTKMLDVLEQFLNYHGYLYVRLDGNTSVEQRQALMERFNADR-RIFC 1330 (1958)
T ss_pred heeecccchH-HHHHHHHHHHHhcCceEEehhHHHHHHHHHHHHHhhcceEEEEecCCccHHHHHHHHHHhcCCC-ceEE
Confidence 3444544422 1223457778888889999999999999999999999998677999999999999999997664 5555
Q ss_pred E----------EecCCccEEEecCC
Q psy437 140 V----------WKIQWKRIIWIHSL 154 (184)
Q Consensus 140 a----------~D~~~vr~v~~~~~ 154 (184)
+ ++.-.-..|+-||-
T Consensus 1331 fILSTrSggvGiNLtgADTVvFYDs 1355 (1958)
T KOG0391|consen 1331 FILSTRSGGVGINLTGADTVVFYDS 1355 (1958)
T ss_pred EEEeccCCccccccccCceEEEecC
Confidence 5 25556666766653
No 419
>COG0634 Hpt Hypoxanthine-guanine phosphoribosyltransferase [Nucleotide transport and metabolism]
Probab=55.97 E-value=25 Score=26.52 Aligned_cols=60 Identities=17% Similarity=0.235 Sum_probs=41.0
Q ss_pred ChHHHHHHHHHhhcCCCcEEEEeccHHHHHHHHHHHHhCCC-------eeEEecCCCCHHHHHHHHH
Q psy437 19 NVLKEVISLIKAKYSGQSGIVYCLTRKECDSVAAALAQERI-------NAISYHAGLADKLRNEVQM 78 (184)
Q Consensus 19 ~k~~~L~~~l~~~~~~~~~IIf~~tr~~~e~la~~L~~~gi-------~~~~~hg~l~~~~R~~~~~ 78 (184)
.+...|.+.|.+...+...++.|--+-..-.+++.+.+..+ .+..||++++....-+++.
T Consensus 19 ~ri~ela~~I~~~y~g~~~~vv~iLkGs~~F~~dL~r~i~~~~e~dFm~vSSYg~~t~ssg~v~i~k 85 (178)
T COG0634 19 ARIKELAAQITEDYGGKDPLVVGVLKGSFPFMADLIRAIDFPLEVDFMHVSSYGGGTSSSGEVKILK 85 (178)
T ss_pred HHHHHHHHHHHHhhCCCceEEEEEcccchhhHHHHHHhcCCCceeEEEEEeccCCCcccCCceEEec
Confidence 47788888887766666677777777766677777766543 4677999988765444333
No 420
>cd00032 CASc Caspase, interleukin-1 beta converting enzyme (ICE) homologues; Cysteine-dependent aspartate-directed proteases that mediate programmed cell death (apoptosis). Caspases are synthesized as inactive zymogens and activated by proteolysis of the peptide backbone adjacent to an aspartate. The resulting two subunits associate to form an (alpha)2(beta)2-tetramer which is the active enzyme. Activation of caspases can be mediated by other caspase homologs.
Probab=55.83 E-value=97 Score=24.23 Aligned_cols=39 Identities=10% Similarity=0.053 Sum_probs=32.7
Q ss_pred cHHHHHHHHHHHHhCCCeeEEecCCCCHHHHHHHHHHHhc
Q psy437 43 TRKECDSVAAALAQERINAISYHAGLADKLRNEVQMKWIS 82 (184)
Q Consensus 43 tr~~~e~la~~L~~~gi~~~~~hg~l~~~~R~~~~~~f~~ 82 (184)
+..+++.++..|++.|+.+. .+-+++..+=.+.+++|.+
T Consensus 30 ~~~D~~~l~~~f~~lgF~V~-~~~nlt~~~~~~~l~~f~~ 68 (243)
T cd00032 30 TDVDAENLTKLFESLGYEVE-VKNNLTAEEILEELKEFAS 68 (243)
T ss_pred hHHHHHHHHHHHHHCCCEEE-EeCCCCHHHHHHHHHHHHh
Confidence 35789999999999999885 4668888888888888884
No 421
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=55.73 E-value=21 Score=24.66 Aligned_cols=94 Identities=10% Similarity=0.006 Sum_probs=0.0
Q ss_pred ccHHHHHHHHHHHHhCCCeeEEecCCCCHHHHHHHHHHHhc--cCceEEEEEeecccHHHHHHHHHhcCCcEEEeeCCCC
Q psy437 42 LTRKECDSVAAALAQERINAISYHAGLADKLRNEVQMKWIS--NKVHVGHWTVVSKECDSVAAALAQERINAISYHAGLA 119 (184)
Q Consensus 42 ~tr~~~e~la~~L~~~gi~~~~~hg~l~~~~R~~~~~~f~~--g~~~vlVaT~tr~~~e~~a~gL~~~gi~~~vih~~~p 119 (184)
+..+-...+...|.+.|+++...|-.-..-.-..+...+.. +...+++.......+..+.+.+...|++..+++.+
T Consensus 11 ~~~~~g~~v~~~l~~~G~~v~~Vnp~~~~i~G~~~y~sl~e~p~~iDlavv~~~~~~~~~~v~~~~~~g~~~v~~~~g-- 88 (116)
T PF13380_consen 11 NPGKFGYRVLRNLKAAGYEVYPVNPKGGEILGIKCYPSLAEIPEPIDLAVVCVPPDKVPEIVDEAAALGVKAVWLQPG-- 88 (116)
T ss_dssp STTSHHHHHHHHHHHTT-EEEEESTTCSEETTEE-BSSGGGCSST-SEEEE-S-HHHHHHHHHHHHHHT-SEEEE-TT--
T ss_pred CCCChHHHHHHHHHhCCCEEEEECCCceEECcEEeeccccCCCCCCCEEEEEcCHHHHHHHHHHHHHcCCCEEEEEcc--
Q ss_pred hHHHHHHHHHhhCCCceEE
Q psy437 120 DKLRNEVQMKWISNKVHLY 138 (184)
Q Consensus 120 ~~~r~~~~~~f~~~~~~v~ 138 (184)
.....+.+..+...++++
T Consensus 89 -~~~~~~~~~a~~~gi~vi 106 (116)
T PF13380_consen 89 -AESEELIEAAREAGIRVI 106 (116)
T ss_dssp -S--HHHHHHHHHTT-EEE
T ss_pred -hHHHHHHHHHHHcCCEEE
No 422
>PRK12902 secA preprotein translocase subunit SecA; Reviewed
Probab=55.66 E-value=38 Score=32.14 Aligned_cols=57 Identities=14% Similarity=0.003 Sum_probs=42.4
Q ss_pred cCceEEEEEeecccHHHHHHHHHhcCCcEEEeeCC-CC-hHHHHHHHHHhhCCCceEEE
Q psy437 83 NKVHVGHWTVVSKECDSVAAALAQERINAISYHAG-LA-DKLRNEVQMKWISNKVHLYN 139 (184)
Q Consensus 83 g~~~vlVaT~tr~~~e~~a~gL~~~gi~~~vih~~-~p-~~~r~~~~~~f~~~~~~v~v 139 (184)
..-+|||.|.+-...|.+++.|...||+.-|+|+. .. ...-.-+-+..+.|.++|-.
T Consensus 438 ~GrPVLIgT~SVe~SE~ls~~L~~~gi~h~vLNAk~~~~~~EA~IIa~AG~~GaVTIAT 496 (939)
T PRK12902 438 QGRPVLVGTTSVEKSELLSALLQEQGIPHNLLNAKPENVEREAEIVAQAGRKGAVTIAT 496 (939)
T ss_pred CCCCEEEeeCCHHHHHHHHHHHHHcCCchheeeCCCcchHhHHHHHHhcCCCCcEEEec
Confidence 34579999999999999999999999998999996 23 33334444556666555443
No 423
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=55.59 E-value=52 Score=22.87 Aligned_cols=55 Identities=9% Similarity=0.016 Sum_probs=34.9
Q ss_pred cEEEEeccHHHHHHHHHHHHhCCCeeEEecCCCCHHHHHHHHHHHhccCceEEEEEe
Q psy437 36 SGIVYCLTRKECDSVAAALAQERINAISYHAGLADKLRNEVQMKWISNKVHVGHWTV 92 (184)
Q Consensus 36 ~~IIf~~tr~~~e~la~~L~~~gi~~~~~hg~l~~~~R~~~~~~f~~g~~~vlVaT~ 92 (184)
-.+|-+.+.+.+....+...+.|.+...-..|+++++...+.+ +- .+++++++.+
T Consensus 69 DVvIDfT~p~~~~~~~~~~~~~g~~~ViGTTG~~~~~~~~l~~-~a-~~~~vl~a~N 123 (124)
T PF01113_consen 69 DVVIDFTNPDAVYDNLEYALKHGVPLVIGTTGFSDEQIDELEE-LA-KKIPVLIAPN 123 (124)
T ss_dssp SEEEEES-HHHHHHHHHHHHHHT-EEEEE-SSSHHHHHHHHHH-HT-TTSEEEE-SS
T ss_pred CEEEEcCChHHhHHHHHHHHhCCCCEEEECCCCCHHHHHHHHH-Hh-ccCCEEEeCC
Confidence 3666555778888888888888999888888887665544444 33 3477777654
No 424
>PF13167 GTP-bdg_N: GTP-binding GTPase N-terminal
Probab=55.46 E-value=49 Score=22.25 Aligned_cols=37 Identities=5% Similarity=0.195 Sum_probs=32.4
Q ss_pred cccHHHHHHHHHhcCCcEEEeeCCCChHHHHHHHHHh
Q psy437 94 SKECDSVAAALAQERINAISYHAGLADKLRNEVQMKW 130 (184)
Q Consensus 94 r~~~e~~a~gL~~~gi~~~vih~~~p~~~r~~~~~~f 130 (184)
.|.++.++......++++.+++..++++...-+.+.|
T Consensus 43 ~GK~eei~~~~~~~~~d~vvfd~~Lsp~Q~rNLe~~~ 79 (95)
T PF13167_consen 43 SGKVEEIKELIEELDADLVVFDNELSPSQQRNLEKAL 79 (95)
T ss_pred hhHHHHHHHHHhhcCCCEEEECCCCCHHHHHHHHHHH
Confidence 3678899998888999999999999999888888877
No 425
>PRK09739 hypothetical protein; Provisional
Probab=55.43 E-value=65 Score=24.24 Aligned_cols=20 Identities=10% Similarity=0.290 Sum_probs=16.9
Q ss_pred EeeCCCChHHHHHHHHHhhC
Q psy437 113 SYHAGLADKLRNEVQMKWIS 132 (184)
Q Consensus 113 vih~~~p~~~r~~~~~~f~~ 132 (184)
+|++++|...+.++-+.|..
T Consensus 89 ~y~~~~Pa~LK~~iD~v~~~ 108 (199)
T PRK09739 89 LWWYSFPAMLKGYIDRVWNN 108 (199)
T ss_pred hhhhcchHHHHHHHHHHccc
Confidence 58999999999999988643
No 426
>cd06295 PBP1_CelR Ligand binding domain of a transcription regulator of cellulose genes, CelR, which is highly homologous to the LacI-GalR family of bacterial transcription regulators. This group includes the ligand binding domain of a transcription regulator of cellulose genes, CelR, which is highly homologous to the LacI-GalR family of bacterial transcription regulators. The binding of CelR to the celE promoter is inhibited specifically by cellobiose. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn chang
Probab=55.35 E-value=95 Score=23.94 Aligned_cols=74 Identities=11% Similarity=0.081 Sum_probs=38.1
Q ss_pred CCcEEEEeccHHHHHHHHHHHHhCCCeeEEecCCCCHHHHHHHHHHHhccCceEEEE-------------EeecccHHHH
Q psy437 34 GQSGIVYCLTRKECDSVAAALAQERINAISYHAGLADKLRNEVQMKWISNKVHVGHW-------------TVVSKECDSV 100 (184)
Q Consensus 34 ~~~~IIf~~tr~~~e~la~~L~~~gi~~~~~hg~l~~~~R~~~~~~f~~g~~~vlVa-------------T~tr~~~e~~ 100 (184)
+...++++......+.+.+.|...+.....+.+..... ..++.+.+..+++++. ++.......+
T Consensus 40 g~~~~v~~~~~~~~~~~~~~l~~~~~dgiii~~~~~~~---~~~~~~~~~~ipvV~~~~~~~~~~~~~V~~d~~~~g~~~ 116 (275)
T cd06295 40 GYDLLLSFVSSPDRDWLARYLASGRADGVILIGQHDQD---PLPERLAETGLPFVVWGRPLPGQPYCYVGSDNVGGGRLA 116 (275)
T ss_pred CCEEEEEeCCchhHHHHHHHHHhCCCCEEEEeCCCCCh---HHHHHHHhCCCCEEEECCccCCCCCCEEEECcHHHHHHH
Confidence 34455554332234455566655566655555433222 3355555555555433 3333456677
Q ss_pred HHHHHhcCCc
Q psy437 101 AAALAQERIN 110 (184)
Q Consensus 101 a~gL~~~gi~ 110 (184)
|..|-..|..
T Consensus 117 a~~l~~~g~~ 126 (275)
T cd06295 117 TEHLLARGRR 126 (275)
T ss_pred HHHHHHCCCC
Confidence 7777666665
No 427
>cd01526 RHOD_ThiF Member of the Rhodanese Homology Domain superfamily. This CD includes several putative molybdopterin synthase sulfurylases including the molybdenum cofactor biosynthetic protein (CnxF) of Aspergillus nidulans and the molybdenum cofactor synthesis protein 3 (MOCS3) of Homo sapiens. These rhodanese-like domains are found C-terminal of the ThiF and MoeZ_MoeB domains.
Probab=55.34 E-value=14 Score=25.49 Aligned_cols=39 Identities=8% Similarity=0.021 Sum_probs=30.8
Q ss_pred ccCceEEEEEeecccHHHHHHHHHhcCC--cEEEeeCCCCh
Q psy437 82 SNKVHVGHWTVVSKECDSVAAALAQERI--NAISYHAGLAD 120 (184)
Q Consensus 82 ~g~~~vlVaT~tr~~~e~~a~gL~~~gi--~~~vih~~~p~ 120 (184)
....+++++|.+-..+..+++.|...|+ ++..+.+|+..
T Consensus 70 ~~~~~ivv~C~~G~rs~~aa~~L~~~G~~~~v~~l~GG~~~ 110 (122)
T cd01526 70 DKDSPIYVVCRRGNDSQTAVRKLKELGLERFVRDIIGGLKA 110 (122)
T ss_pred CCCCcEEEECCCCCcHHHHHHHHHHcCCccceeeecchHHH
Confidence 3456789899887788889999999999 46778887743
No 428
>PF09480 PrgH: Type III secretion system protein PrgH-EprH (PrgH); InterPro: IPR019029 In Salmonella, the gene encoding this protein is part of a four-gene operon PrgHIJK, while in other organisms it is found in type III secretion operons. PrgH has been shown to be required for type III secretion and is a structural component of the needle complex, which is the core component of type III secretion systems. ; GO: 0016021 integral to membrane; PDB: 4A4Y_A 2XXS_A 2Y9J_C 3GR1_F 3GR0_D.
Probab=55.22 E-value=1.3e+02 Score=25.53 Aligned_cols=134 Identities=12% Similarity=0.093 Sum_probs=63.5
Q ss_pred CCCeEEEEEEccChHHHHHHHHHhhcCCCcEEEEeccHHHHHHHHHHHHh--CCC------------eeEEecCCCCH--
Q psy437 7 RANLKYEILPKKNVLKEVISLIKAKYSGQSGIVYCLTRKECDSVAAALAQ--ERI------------NAISYHAGLAD-- 70 (184)
Q Consensus 7 R~Nl~y~v~~~~~k~~~L~~~l~~~~~~~~~IIf~~tr~~~e~la~~L~~--~gi------------~~~~~hg~l~~-- 70 (184)
|.+..|.......-.+...+.|.+.....+..| ..-.+.-+.+..+|.+ .|+ ++..+++..+.
T Consensus 177 ~d~~iyVla~~qrd~~W~rQ~L~k~~~~~~v~v-~~i~~e~~~I~~~L~~~~p~l~~~~i~l~~P~~P~l~ls~q~~~~~ 255 (375)
T PF09480_consen 177 RDGKIYVLASTQRDAEWARQALLKEHYNEPVVV-LWIDQEEKRIESWLSQNFPGLPYLKIDLDNPCQPVLRLSRQRNALD 255 (375)
T ss_dssp TTS-EEEEESSHHHHHHHHHHHHHHTGTTTEEE-E-HHHHHHHHHHHHHHHSTT--EEEEE-SSTTS-EEEEESSS----
T ss_pred CCccEEEEECcchHHHHHHHHHHhCCCCCceEE-echHHHHHHHHHHHHhcCCCceEEEEECCCCCCCEEEEEccCCccc
Confidence 445555555554445556666554423333333 3333445567777766 454 33335555444
Q ss_pred -HHHHH---HHHHHhccCceEEEEEeecccHHHHH-HHHHhcCCc----------EEEeeCCCChHHHHHHHH-------
Q psy437 71 -KLRNE---VQMKWISNKVHVGHWTVVSKECDSVA-AALAQERIN----------AISYHAGLADKLRNEVQM------- 128 (184)
Q Consensus 71 -~~R~~---~~~~f~~g~~~vlVaT~tr~~~e~~a-~gL~~~gi~----------~~vih~~~p~~~r~~~~~------- 128 (184)
+++.. .+..+..=-.++-|-.-+..++..-| .||+..+|. +++|++.+....-..+++
T Consensus 256 ~~~~~~l~~~l~~~~Pya~~v~i~~~s~~~l~~~Ae~GL~~~ni~yr~i~~~~~vtFiI~~~L~D~~l~~l~~fi~~f~~ 335 (375)
T PF09480_consen 256 EKEIEQLIKALLQFFPYAKDVKIKSKSDEELLQQAENGLTRLNIPYRRINKNNGVTFIIRDALNDKELSSLRRFIDEFYQ 335 (375)
T ss_dssp HHHHHHHHHHHHHH-TT-S--EEEEE-HHHHHHHHHHHHHHTT--EEEEEETTEEEEEE-S---HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCccccceEEEcCHHHHHHHHHHHHHhcCCceEEEecCCeEEEEEeCCCCHHHHHHHHHHHHHHHH
Confidence 66666 33333322223333334445554445 678877665 489999999876544433
Q ss_pred HhhCCCceEEEEE
Q psy437 129 KWISNKVHLYNVW 141 (184)
Q Consensus 129 ~f~~~~~~v~va~ 141 (184)
.|.+.-++.-+.+
T Consensus 336 ~WG~~~IqFsI~L 348 (375)
T PF09480_consen 336 QWGTRYIQFSINL 348 (375)
T ss_dssp HH-SSSEEEEEEE
T ss_pred hhCccEEEEEEEe
Confidence 3777777776663
No 429
>cd06277 PBP1_LacI_like_1 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=55.15 E-value=94 Score=23.85 Aligned_cols=56 Identities=9% Similarity=0.030 Sum_probs=27.6
Q ss_pred HHHHHhCCCeeEEecCCCCHHHHHHHHHHHhccCceEE-------------EEEeecccHHHHHHHHHhcCCc
Q psy437 51 AAALAQERINAISYHAGLADKLRNEVQMKWISNKVHVG-------------HWTVVSKECDSVAAALAQERIN 110 (184)
Q Consensus 51 a~~L~~~gi~~~~~hg~l~~~~R~~~~~~f~~g~~~vl-------------VaT~tr~~~e~~a~gL~~~gi~ 110 (184)
...|...++....+.+..+.. .++.+....++++ |.++-......++..|-..|.+
T Consensus 51 ~~~l~~~~vdgiii~~~~~~~----~~~~l~~~~ipvV~~~~~~~~~~~~~V~~d~~~~~~~a~~~l~~~g~~ 119 (268)
T cd06277 51 PSFLEDGKVDGIILLGGISTE----YIKEIKELGIPFVLVDHYIPNEKADCVLTDNYSGAYAATEYLIEKGHR 119 (268)
T ss_pred HHHHHHCCCCEEEEeCCCChH----HHHHHhhcCCCEEEEccCCCCCCCCEEEecchHHHHHHHHHHHHCCCC
Confidence 344555566666665543322 2444444333332 3334344555666677666654
No 430
>PRK10355 xylF D-xylose transporter subunit XylF; Provisional
Probab=54.94 E-value=1.2e+02 Score=24.81 Aligned_cols=63 Identities=14% Similarity=0.059 Sum_probs=30.2
Q ss_pred HHHHhCCCeeEEecCCCCHHHHHHHHHHHhccCceEEEEEeeccc-HHHHHHHHHhcCCcEEEe
Q psy437 52 AALAQERINAISYHAGLADKLRNEVQMKWISNKVHVGHWTVVSKE-CDSVAAALAQERINAISY 114 (184)
Q Consensus 52 ~~L~~~gi~~~~~hg~l~~~~R~~~~~~f~~g~~~vlVaT~tr~~-~e~~a~gL~~~gi~~~vi 114 (184)
+.+.+.|+.+....+.-+.+...+.++.+.+.++..||.++.... .......+...++++.++
T Consensus 49 ~~a~~~g~~l~i~~~~~~~~~~~~~i~~l~~~~vDGiIi~~~~~~~~~~~l~~~~~~~iPvV~i 112 (330)
T PRK10355 49 KKAESLGAKVFVQSANGNEETQMSQIENMINRGVDVLVIIPYNGQVLSNVIKEAKQEGIKVLAY 112 (330)
T ss_pred HHHHHcCCEEEEECCCCCHHHHHHHHHHHHHcCCCEEEEeCCChhhHHHHHHHHHHCCCeEEEE
Confidence 334445666655555444444445555566656665555543221 122223444555653333
No 431
>smart00493 TOPRIM topoisomerases, DnaG-type primases, OLD family nucleases and RecR proteins.
Probab=54.55 E-value=48 Score=20.34 Aligned_cols=64 Identities=13% Similarity=-0.019 Sum_probs=38.4
Q ss_pred EEEEeccHHHHHHHHHHHHhCCCeeEEecCCCCHHHHHHHHHHHhccCceEEEEEeecccHHHHHH
Q psy437 37 GIVYCLTRKECDSVAAALAQERINAISYHAGLADKLRNEVQMKWISNKVHVGHWTVVSKECDSVAA 102 (184)
Q Consensus 37 ~IIf~~tr~~~e~la~~L~~~gi~~~~~hg~l~~~~R~~~~~~f~~g~~~vlVaT~tr~~~e~~a~ 102 (184)
.++.|....++..+.+.+.. +..+....|.....+....+.++... ..|+++++.-..=+.++.
T Consensus 2 ~l~ivEg~~da~~~~~~~~~-~~~~~~~~G~~~~~~~~~~l~~~~~~-~~Iii~~D~D~~G~~~~~ 65 (76)
T smart00493 2 VLIIVEGPADAIALEKAGGF-GGNVVALGGHLLKKEIIKLLKRLAKK-KEVILATDPDREGEAIAW 65 (76)
T ss_pred EEEEEcCHHHHHHHHHhcCC-CEEEEEEeeeecHHHHHHHHHHHhcC-CEEEEEcCCChhHHHHHH
Confidence 46777777777777776532 23444555554444555566665544 579999996654434433
No 432
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms]
Probab=54.42 E-value=1.8e+02 Score=26.94 Aligned_cols=87 Identities=11% Similarity=0.036 Sum_probs=68.0
Q ss_pred cCceEEEEEeecccHHHHHHHHHhcCCcEEEeeCCCChHHHHHHHHH----hhCCCceEEEE-------EecCCccEEEe
Q psy437 83 NKVHVGHWTVVSKECDSVAAALAQERINAISYHAGLADKLRNEVQMK----WISNKVHLYNV-------WKIQWKRIIWI 151 (184)
Q Consensus 83 g~~~vlVaT~tr~~~e~~a~gL~~~gi~~~vih~~~p~~~r~~~~~~----f~~~~~~v~va-------~D~~~vr~v~~ 151 (184)
...+++|-++|-..+-++...|...+-+++.+|.-+....|...-+. |..+...|+|+ .|++ +=+-
T Consensus 439 ~~~kvlvI~NTV~~Aie~Y~~Lk~~~~~v~LlHSRf~~~dR~~ke~~l~~~~~~~~~~IvVaTQVIEagvDid---fd~m 515 (733)
T COG1203 439 EGKKVLVIVNTVDRAIELYEKLKEKGPKVLLLHSRFTLKDREEKERELKKLFKQNEGFIVVATQVIEAGVDID---FDVL 515 (733)
T ss_pred cCCcEEEEEecHHHHHHHHHHHHhcCCCEEEEecccchhhHHHHHHHHHHHHhccCCeEEEEeeEEEEEeccc---cCee
Confidence 45678999999999999999997777778999999999999988885 24567778887 3665 3344
Q ss_pred cCCCCCccccccccccccCCccc
Q psy437 152 HSLVLIKPDYLPPILDLRLGRED 174 (184)
Q Consensus 152 ~~~p~~~e~y~~~i~~~~~~r~~ 174 (184)
+.-+...++-+||.+ |++|.+
T Consensus 516 ITe~aPidSLIQR~G--Rv~R~g 536 (733)
T COG1203 516 ITELAPIDSLIQRAG--RVNRHG 536 (733)
T ss_pred eecCCCHHHHHHHHH--HHhhcc
Confidence 466778889999995 666654
No 433
>cd06318 PBP1_ABC_sugar_binding_like_9 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=54.14 E-value=1e+02 Score=23.87 Aligned_cols=70 Identities=14% Similarity=-0.011 Sum_probs=38.6
Q ss_pred HHHHHHHHHhCCCeeEEecCCCCHHHHHHHHHHHhccCceEEEEEeeccc-HHHHHHHHHhcCCcEEEeeC
Q psy437 47 CDSVAAALAQERINAISYHAGLADKLRNEVQMKWISNKVHVGHWTVVSKE-CDSVAAALAQERINAISYHA 116 (184)
Q Consensus 47 ~e~la~~L~~~gi~~~~~hg~l~~~~R~~~~~~f~~g~~~vlVaT~tr~~-~e~~a~gL~~~gi~~~vih~ 116 (184)
...+.+.+++.|+.+....++-+.+.-.+.++.+.+..+..||.++.... +..+...+...|+++..+..
T Consensus 18 ~~~i~~~~~~~g~~v~~~~~~~~~~~~~~~i~~~~~~~~Dgiii~~~~~~~~~~~i~~~~~~~iPvV~~~~ 88 (282)
T cd06318 18 TEAAKAHAKALGYELISTDAQGDLTKQIADVEDLLTRGVNVLIINPVDPEGLVPAVAAAKAAGVPVVVVDS 88 (282)
T ss_pred HHHHHHHHHHcCCEEEEEcCCCCHHHHHHHHHHHHHcCCCEEEEecCCccchHHHHHHHHHCCCCEEEecC
Confidence 34445555666777766655445444456677777777766655543321 12333455566777444543
No 434
>KOG0926|consensus
Probab=54.09 E-value=9.9 Score=35.52 Aligned_cols=54 Identities=11% Similarity=-0.039 Sum_probs=45.7
Q ss_pred eeEEecCCCCHHHHHHHHHHHhccCceEEEEEeecccHHHHHHHHHhcCCcEEEeeCCCCh
Q psy437 60 NAISYHAGLADKLRNEVQMKWISNKVHVGHWTVVSKECDSVAAALAQERINAISYHAGLAD 120 (184)
Q Consensus 60 ~~~~~hg~l~~~~R~~~~~~f~~g~~~vlVaT~tr~~~e~~a~gL~~~gi~~~vih~~~p~ 120 (184)
.+..+++=|+.++..++.+.--.|.--++|||+ ++-..|.++||+ +|+-.|..+
T Consensus 606 yvLPLYSLLs~~~Q~RVF~~~p~g~RLcVVaTN------VAETSLTIPgIk-YVVD~Gr~K 659 (1172)
T KOG0926|consen 606 YVLPLYSLLSTEKQMRVFDEVPKGERLCVVATN------VAETSLTIPGIK-YVVDCGRVK 659 (1172)
T ss_pred EEeehhhhcCHHHhhhhccCCCCCceEEEEecc------chhcccccCCee-EEEeccchh
Confidence 456677788888888888888889999999999 667789999999 999888654
No 435
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=54.05 E-value=28 Score=27.87 Aligned_cols=37 Identities=27% Similarity=0.397 Sum_probs=29.3
Q ss_pred hHHHHHHHHHhhcCCCcEEEEeccHHHHHHHHHHHHhCCC
Q psy437 20 VLKEVISLIKAKYSGQSGIVYCLTRKECDSVAAALAQERI 59 (184)
Q Consensus 20 k~~~L~~~l~~~~~~~~~IIf~~tr~~~e~la~~L~~~gi 59 (184)
-++.+.+.|+ +++..++|++|.++++.+.+.|++.|+
T Consensus 177 ~le~~~~~Lk---pgg~~~~y~P~veQv~kt~~~l~~~g~ 213 (256)
T COG2519 177 VLEHVSDALK---PGGVVVVYSPTVEQVEKTVEALRERGF 213 (256)
T ss_pred HHHHHHHHhC---CCcEEEEEcCCHHHHHHHHHHHHhcCc
Confidence 4555555553 567788899999999999999998765
No 436
>PRK10329 glutaredoxin-like protein; Provisional
Probab=54.04 E-value=56 Score=20.90 Aligned_cols=53 Identities=8% Similarity=0.010 Sum_probs=35.2
Q ss_pred EEEEe-ccHHHHHHHHHHHHhCCCeeEEecCCCCHHHHHHHHHHHhccCceEEEE
Q psy437 37 GIVYC-LTRKECDSVAAALAQERINAISYHAGLADKLRNEVQMKWISNKVHVGHW 90 (184)
Q Consensus 37 ~IIf~-~tr~~~e~la~~L~~~gi~~~~~hg~l~~~~R~~~~~~f~~g~~~vlVa 90 (184)
..+|+ +++..|..+...|.+.|+....+.-..+++.+..... .-...+++++.
T Consensus 3 v~lYt~~~Cp~C~~ak~~L~~~gI~~~~idi~~~~~~~~~~~~-~g~~~vPvv~i 56 (81)
T PRK10329 3 ITIYTRNDCVQCHATKRAMESRGFDFEMINVDRVPEAAETLRA-QGFRQLPVVIA 56 (81)
T ss_pred EEEEeCCCCHhHHHHHHHHHHCCCceEEEECCCCHHHHHHHHH-cCCCCcCEEEE
Confidence 45676 6778899999999999998877766655544444332 22235666654
No 437
>cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis. It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways.
Probab=53.72 E-value=1.1e+02 Score=24.32 Aligned_cols=92 Identities=10% Similarity=-0.009 Sum_probs=54.9
Q ss_pred HHHHHHHhCCCeeEEecC------CCCHHHHHHHHHHHhc---cCceEEEEEe--ecccHHHHHHHHHhcCCcEEEee--
Q psy437 49 SVAAALAQERINAISYHA------GLADKLRNEVQMKWIS---NKVHVGHWTV--VSKECDSVAAALAQERINAISYH-- 115 (184)
Q Consensus 49 ~la~~L~~~gi~~~~~hg------~l~~~~R~~~~~~f~~---g~~~vlVaT~--tr~~~e~~a~gL~~~gi~~~vih-- 115 (184)
.+.++|.+.|+...+.-| .|+.+||.++++.+.+ |+..+++.+. +-.++-..|+.....|++..++-
T Consensus 25 ~~i~~l~~~Gv~gl~v~GstGE~~~lt~~Er~~l~~~~~~~~~~~~~vi~gv~~~~~~~~~~~a~~a~~~G~d~v~~~~P 104 (284)
T cd00950 25 RLIEFQIENGTDGLVVCGTTGESPTLSDEEHEAVIEAVVEAVNGRVPVIAGTGSNNTAEAIELTKRAEKAGADAALVVTP 104 (284)
T ss_pred HHHHHHHHcCCCEEEECCCCcchhhCCHHHHHHHHHHHHHHhCCCCcEEeccCCccHHHHHHHHHHHHHcCCCEEEEccc
Confidence 344444455555444433 3678899988887764 5677776654 34566777777778888843322
Q ss_pred -CCC--ChHHHHHHHHHhhCCCceEEEE
Q psy437 116 -AGL--ADKLRNEVQMKWISNKVHLYNV 140 (184)
Q Consensus 116 -~~~--p~~~r~~~~~~f~~~~~~v~va 140 (184)
+.. +.....|+.+....-.+++++.
T Consensus 105 ~~~~~~~~~l~~~~~~ia~~~~~pi~lY 132 (284)
T cd00950 105 YYNKPSQEGLYAHFKAIAEATDLPVILY 132 (284)
T ss_pred ccCCCCHHHHHHHHHHHHhcCCCCEEEE
Confidence 222 2345566666555445677765
No 438
>KOG4439|consensus
Probab=53.53 E-value=90 Score=29.02 Aligned_cols=94 Identities=12% Similarity=0.057 Sum_probs=58.7
Q ss_pred ChHHHHHHHHHhh--cCCCcEEEEeccHHHHHHHHHHHHhCCCeeEEecCCCCHHHHHHHHHHHhc--cCceEEEEEeec
Q psy437 19 NVLKEVISLIKAK--YSGQSGIVYCLTRKECDSVAAALAQERINAISYHAGLADKLRNEVQMKWIS--NKVHVGHWTVVS 94 (184)
Q Consensus 19 ~k~~~L~~~l~~~--~~~~~~IIf~~tr~~~e~la~~L~~~gi~~~~~hg~l~~~~R~~~~~~f~~--g~~~vlVaT~tr 94 (184)
.|+...+..+... ....+.+|...=.....-+...|++.|.....+||....++|..+++.|-. |+.+|++-.-+-
T Consensus 729 ~Ki~~~l~~le~i~~~skeK~viVSQwtsvLniv~~hi~~~g~~y~si~Gqv~vK~Rq~iv~~FN~~k~~~rVmLlSLtA 808 (901)
T KOG4439|consen 729 CKIAMVLEILETILTSSKEKVVIVSQWTSVLNIVRKHIQKGGHIYTSITGQVLVKDRQEIVDEFNQEKGGARVMLLSLTA 808 (901)
T ss_pred hHHHHHHHHHHHHhhcccceeeehhHHHHHHHHHHHHHhhCCeeeeeecCccchhHHHHHHHHHHhccCCceEEEEEEcc
Confidence 3555555544332 134455554333333445566777889999999999999999999999974 556777655533
Q ss_pred ccHHHHHHHHHhcCCcE---EEeeCC
Q psy437 95 KECDSVAAALAQERINA---ISYHAG 117 (184)
Q Consensus 95 ~~~e~~a~gL~~~gi~~---~vih~~ 117 (184)
+ +-||+-.|-.- +-+|++
T Consensus 809 G-----GVGLNL~GaNHlilvDlHWN 829 (901)
T KOG4439|consen 809 G-----GVGLNLIGANHLILVDLHWN 829 (901)
T ss_pred C-----cceeeecccceEEEEecccC
Confidence 2 23566555541 225665
No 439
>PRK09189 uroporphyrinogen-III synthase; Validated
Probab=53.48 E-value=1e+02 Score=23.80 Aligned_cols=55 Identities=7% Similarity=-0.131 Sum_probs=35.5
Q ss_pred ceEEEEEeecccHHHHHHHHHhcCCcE---EEeeCCCChHHHHHHHHHhhCCCceEEEE
Q psy437 85 VHVGHWTVVSKECDSVAAALAQERINA---ISYHAGLADKLRNEVQMKWISNKVHLYNV 140 (184)
Q Consensus 85 ~~vlVaT~tr~~~e~~a~gL~~~gi~~---~vih~~~p~~~r~~~~~~f~~~~~~v~va 140 (184)
.++++.+...+ -+.+...|...|+.+ .+|.--.+......+...+..+++.+++.
T Consensus 119 ~~vL~~rg~~~-r~~l~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~l~~~~~d~i~f 176 (240)
T PRK09189 119 ARLLYLAGRPR-APVFEDRLAAAGIPFRVAECYDMLPVMYSPATLSAILGGAPFDAVLL 176 (240)
T ss_pred CcEEEeccCcc-cchhHHHHHhCCCeeEEEEEEEeecCCCChHHHHHHHhcCCCCEEEE
Confidence 35666655433 368889999998774 45654444444445566677787777776
No 440
>cd01536 PBP1_ABC_sugar_binding_like Periplasmic sugar-binding domain of active transport systems that are members of the type I periplasmic binding protein (PBP1) superfamily. Periplasmic sugar-binding domain of active transport systems that are members of the type I periplasmic binding protein (PBP1) superfamily. The members of this family function as the primary receptors for chemotaxis and transport of many sugar based solutes in bacteria and archaea. The sugar binding domain is also homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR. Moreover, this periplasmic binding domain, also known as Venus flytrap domain, undergoes transition from an open to a closed conformational state upon the binding of ligands such as lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. This family also includes the periplasmic binding domain of autoinducer-2 (AI-2
Probab=53.26 E-value=97 Score=23.44 Aligned_cols=15 Identities=13% Similarity=-0.077 Sum_probs=8.0
Q ss_pred cHHHHHHHHHhc--CCc
Q psy437 96 ECDSVAAALAQE--RIN 110 (184)
Q Consensus 96 ~~e~~a~gL~~~--gi~ 110 (184)
....+++.|-.. |..
T Consensus 106 ~~~~~~~~l~~~~~g~~ 122 (267)
T cd01536 106 AGRLAGEYLAKLLGGKG 122 (267)
T ss_pred HHHHHHHHHHHHhCCCc
Confidence 345555555444 666
No 441
>cd06294 PBP1_ycjW_transcription_regulator_like Ligand-binding domain of uncharacterized transcription regulator ycjW which is a member of the LacI-GalR family repressors. This group includes the ligand-binding domain of uncharacterized transcription regulator ycjW which is a member of the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=53.19 E-value=1e+02 Score=23.59 Aligned_cols=22 Identities=5% Similarity=-0.275 Sum_probs=13.6
Q ss_pred EEEeecccHHHHHHHHHhcCCc
Q psy437 89 HWTVVSKECDSVAAALAQERIN 110 (184)
Q Consensus 89 VaT~tr~~~e~~a~gL~~~gi~ 110 (184)
|.++.......++..|...|.+
T Consensus 102 v~~d~~~~g~~~~~~l~~~g~~ 123 (270)
T cd06294 102 VDNDNIQAGYDATEYLIKLGHK 123 (270)
T ss_pred EEECcHHHHHHHHHHHHHcCCc
Confidence 3344445566777777766765
No 442
>PF02617 ClpS: ATP-dependent Clp protease adaptor protein ClpS; InterPro: IPR003769 In the bacterial cytosol, ATP-dependent protein degradation is performed by several different chaperone-protease pairs, including ClpAP. ClpS directly influences the ClpAP machine by binding to the N-terminal domain of the chaperone ClpA. The degradation of ClpAP substrates, both SsrA-tagged proteins and ClpA itself, is specifically inhibited by ClpS. ClpS modifies ClpA substrate specificity, potentially redirecting degradation by ClpAP toward aggregated proteins []. ClpS is a small alpha/beta protein that consists of three alpha-helices connected to three antiparallel beta-strands []. The protein has a globular shape, with a curved layer of three antiparallel alpha-helices over a twisted antiparallel beta-sheet. Dimerization of ClpS may occur through its N-terminal domain. This short extended N-terminal region in ClpS is followed by the central seven-residue beta-strand, which is flanked by two other beta-strands in a small beta-sheet. ; GO: 0030163 protein catabolic process; PDB: 3O2O_B 1MBU_D 3O2B_C 2WA9_D 3O1F_A 2W9R_A 1MG9_A 1MBX_C 2WA8_C 1R6O_D ....
Probab=53.17 E-value=42 Score=21.53 Aligned_cols=25 Identities=20% Similarity=0.211 Sum_probs=18.6
Q ss_pred CCcEEEEeccHHHHHHHHHHHHhCC
Q psy437 34 GQSGIVYCLTRKECDSVAAALAQER 58 (184)
Q Consensus 34 ~~~~IIf~~tr~~~e~la~~L~~~g 58 (184)
.+.++|++.+++.|+..+..|...|
T Consensus 47 ~G~avv~~~~~e~ae~~~~~l~~~g 71 (82)
T PF02617_consen 47 EGRAVVGTGSREEAEEYAEKLQRAG 71 (82)
T ss_dssp HSEEEEEEEEHHHHHHHHHHHHHHH
T ss_pred cCCEeeeeCCHHHHHHHHHHHHHHh
Confidence 3567788888888888888777655
No 443
>PRK06827 phosphoribosylpyrophosphate synthetase; Provisional
Probab=53.08 E-value=62 Score=27.53 Aligned_cols=53 Identities=6% Similarity=-0.152 Sum_probs=42.9
Q ss_pred eccHHHHHHHHHHHHhCCC---eeEEecCCCCHHHHHHHHHHHhccCceEEEEEeec
Q psy437 41 CLTRKECDSVAAALAQERI---NAISYHAGLADKLRNEVQMKWISNKVHVGHWTVVS 94 (184)
Q Consensus 41 ~~tr~~~e~la~~L~~~gi---~~~~~hg~l~~~~R~~~~~~f~~g~~~vlVaT~tr 94 (184)
+.|-.+....++.|++.|. .+.+.||-++ ....++.+.|.+|.+.-||+|+|-
T Consensus 274 I~TG~Tl~~aa~~Lk~~GA~~V~~~~tH~vf~-~a~~~l~~~~~~g~i~~iv~TdTi 329 (382)
T PRK06827 274 IASGGSMIDAAKELKSRGAKKIIVAATFGFFT-NGLEKFDKAYEEGYFDRIIGTNLV 329 (382)
T ss_pred cCcHHHHHHHHHHHHHcCCCEEEEEEEeecCh-HHHHHHHhhcccCCCCEEEEeCCC
Confidence 6788888889999998764 4677899888 667777777888878889999974
No 444
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=52.93 E-value=91 Score=23.01 Aligned_cols=47 Identities=9% Similarity=0.084 Sum_probs=25.3
Q ss_pred cEEEEeccHHHHHHHHHHHHhC--CCeeEE-ecCCCCHHHHHHHHHHHhc
Q psy437 36 SGIVYCLTRKECDSVAAALAQE--RINAIS-YHAGLADKLRNEVQMKWIS 82 (184)
Q Consensus 36 ~~IIf~~tr~~~e~la~~L~~~--gi~~~~-~hg~l~~~~R~~~~~~f~~ 82 (184)
+.-++-.+.+.++.+++.|++. ++.++. +||-++..+-..+++....
T Consensus 50 ~ifllG~~~~~~~~~~~~l~~~yP~l~ivg~~~g~f~~~~~~~i~~~I~~ 99 (172)
T PF03808_consen 50 RIFLLGGSEEVLEKAAANLRRRYPGLRIVGYHHGYFDEEEEEAIINRINA 99 (172)
T ss_pred eEEEEeCCHHHHHHHHHHHHHHCCCeEEEEecCCCCChhhHHHHHHHHHH
Confidence 3334445666667777777654 666553 4444554554444444443
No 445
>cd01534 4RHOD_Repeat_3 Member of the Rhodanese Homology Domain superfamily, repeat 3. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 3rd repeat which does not contain the putative catalytic Cys residue.
Probab=52.77 E-value=24 Score=22.89 Aligned_cols=36 Identities=22% Similarity=0.080 Sum_probs=27.8
Q ss_pred CceEEEEEeecccHHHHHHHHHhcCCcEEEeeCCCC
Q psy437 84 KVHVGHWTVVSKECDSVAAALAQERINAISYHAGLA 119 (184)
Q Consensus 84 ~~~vlVaT~tr~~~e~~a~gL~~~gi~~~vih~~~p 119 (184)
..+|+++|.+=..+...|..|...|+++..+.+|++
T Consensus 56 ~~~iv~~c~~G~rs~~aa~~L~~~G~~v~~l~GG~~ 91 (95)
T cd01534 56 GARIVLADDDGVRADMTASWLAQMGWEVYVLEGGLA 91 (95)
T ss_pred CCeEEEECCCCChHHHHHHHHHHcCCEEEEecCcHH
Confidence 346888888766677888999999998666777764
No 446
>PF14617 CMS1: U3-containing 90S pre-ribosomal complex subunit
Probab=52.57 E-value=48 Score=26.47 Aligned_cols=57 Identities=18% Similarity=0.130 Sum_probs=35.6
Q ss_pred CcEEEEeccHHHHHHHHHHHHhCC---CeeEEecCCCCHHHHHHHHHH-HhccCceEEEEEeec
Q psy437 35 QSGIVYCLTRKECDSVAAALAQER---INAISYHAGLADKLRNEVQMK-WISNKVHVGHWTVVS 94 (184)
Q Consensus 35 ~~~IIf~~tr~~~e~la~~L~~~g---i~~~~~hg~l~~~~R~~~~~~-f~~g~~~vlVaT~tr 94 (184)
+.+||.|.+.-.|-.+...|.... ..++-+-+. .-+.+-+-. ..++.+.|.|+||+|
T Consensus 127 P~~lvvs~SalRa~dl~R~l~~~~~k~~~v~KLFaK---H~Kl~eqv~~L~~~~~~i~vGTP~R 187 (252)
T PF14617_consen 127 PHVLVVSSSALRAADLIRALRSFKGKDCKVAKLFAK---HIKLEEQVKLLKKTRVHIAVGTPGR 187 (252)
T ss_pred CEEEEEcchHHHHHHHHHHHHhhccCCchHHHHHHh---hccHHHHHHHHHhCCceEEEeChHH
Confidence 457889999999999999998642 233222221 112222222 344788999999976
No 447
>cd06297 PBP1_LacI_like_12 Ligand-binding domain of uncharacterized transcription regulators from Thermus thermophilus and close homologs. Ligand-binding domain of uncharacterized transcription regulators from Thermus thermophilus and close homologs from other bacteria. This group belongs to the the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding.
Probab=52.47 E-value=1.1e+02 Score=23.71 Aligned_cols=16 Identities=19% Similarity=-0.172 Sum_probs=8.2
Q ss_pred eecccHHHHHHHHHhc
Q psy437 92 VVSKECDSVAAALAQE 107 (184)
Q Consensus 92 ~tr~~~e~~a~gL~~~ 107 (184)
+-......+++.|-..
T Consensus 97 d~~~~g~~a~~~L~~~ 112 (269)
T cd06297 97 DNRLGGRLAGAYLADF 112 (269)
T ss_pred CcHHHHHHHHHHHHHh
Confidence 3334555666666444
No 448
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=52.37 E-value=1.3e+02 Score=28.33 Aligned_cols=76 Identities=11% Similarity=-0.038 Sum_probs=55.0
Q ss_pred hccCceEEEEEeecccHHHHHHHHHhcCCcEEEeeCCCChHHHHHHHHHhhCCCceEEEE-------EecC--CccEEEe
Q psy437 81 ISNKVHVGHWTVVSKECDSVAAALAQERINAISYHAGLADKLRNEVQMKWISNKVHLYNV-------WKIQ--WKRIIWI 151 (184)
Q Consensus 81 ~~g~~~vlVaT~tr~~~e~~a~gL~~~gi~~~vih~~~p~~~r~~~~~~f~~~~~~v~va-------~D~~--~vr~v~~ 151 (184)
.....+++|..++....+.++..|...... ....+.-+ .+..+.+.|+.+.-.|+++ .|.| +...|+.
T Consensus 644 ~~~~g~~LVLFtS~~~l~~v~~~l~~~~~~-~l~Qg~~~--~~~~l~~~F~~~~~~vLlG~~sFwEGVD~p~~~~~~viI 720 (820)
T PRK07246 644 KQLQQPILVLFNSKKHLLAVSDLLDQWQVS-HLAQEKNG--TAYNIKKRFDRGEQQILLGLGSFWEGVDFVQADRMIEVI 720 (820)
T ss_pred HhcCCCEEEEECcHHHHHHHHHHHhhcCCc-EEEeCCCc--cHHHHHHHHHcCCCeEEEecchhhCCCCCCCCCeEEEEE
Confidence 344567899999999999999999766666 45555322 2455788899877778887 3986 4566788
Q ss_pred cCCCCCcc
Q psy437 152 HSLVLIKP 159 (184)
Q Consensus 152 ~~~p~~~e 159 (184)
.-+|-..+
T Consensus 721 ~kLPF~~P 728 (820)
T PRK07246 721 TRLPFDNP 728 (820)
T ss_pred ecCCCCCC
Confidence 88886644
No 449
>cd06533 Glyco_transf_WecG_TagA The glycosyltransferase WecG/TagA superfamily contains Escherichia coli WecG, Bacillus subtilis TagA and related proteins. E. coli WecG is believed to be a UDP-N-acetyl-D-mannosaminuronic acid transferase, and is involved in enterobacterial common antigen (eca) synthesis. B. subtilis TagA plays a key role in the Wall Teichoic Acid (WTA) biosynthetic pathway, catalyzing the transfer of N-acetylmannosamine to the C4 hydroxyl of a membrane-anchored N-acetylglucosaminyl diphospholipid to make ManNAc-beta-(1,4)-GlcNAc-pp-undecaprenyl. This is the first committed step in this pathway. Also included in this group is Xanthomonas campestris pv. campestris GumM, a glycosyltransferase participating in the biosynthesis of the exopolysaccharide xanthan.
Probab=52.36 E-value=93 Score=22.96 Aligned_cols=80 Identities=8% Similarity=-0.007 Sum_probs=43.0
Q ss_pred CcEEEEeccHHHHHHHHHHHHhC--CCeeEE-ecCCCCHHHHHHHHHHHhccCceEEEEEeecccHHHHHHHHHhcCCcE
Q psy437 35 QSGIVYCLTRKECDSVAAALAQE--RINAIS-YHAGLADKLRNEVQMKWISNKVHVGHWTVVSKECDSVAAALAQERINA 111 (184)
Q Consensus 35 ~~~IIf~~tr~~~e~la~~L~~~--gi~~~~-~hg~l~~~~R~~~~~~f~~g~~~vlVaT~tr~~~e~~a~gL~~~gi~~ 111 (184)
.+.-++-.+.+.++.+++.|++. |+.++. +||-+..++...++ ..+...+-+.
T Consensus 47 ~~v~llG~~~~~~~~~~~~l~~~yp~l~i~g~~~g~~~~~~~~~i~------------------------~~I~~~~pdi 102 (171)
T cd06533 47 LRVFLLGAKPEVLEKAAERLRARYPGLKIVGYHHGYFGPEEEEEII------------------------ERINASGADI 102 (171)
T ss_pred CeEEEECCCHHHHHHHHHHHHHHCCCcEEEEecCCCCChhhHHHHH------------------------HHHHHcCCCE
Confidence 34444456666677777677654 666555 55655554444333 3445555555
Q ss_pred EEeeCCCChHHHHHHHHHhhCCCceEEE
Q psy437 112 ISYHAGLADKLRNEVQMKWISNKVHLYN 139 (184)
Q Consensus 112 ~vih~~~p~~~r~~~~~~f~~~~~~v~v 139 (184)
+.+-.|.|+.+. ++++-.......++.
T Consensus 103 v~vglG~PkQE~-~~~~~~~~l~~~v~~ 129 (171)
T cd06533 103 LFVGLGAPKQEL-WIARHKDRLPVPVAI 129 (171)
T ss_pred EEEECCCCHHHH-HHHHHHHHCCCCEEE
Confidence 666667777663 444444333333333
No 450
>PRK01415 hypothetical protein; Validated
Probab=52.07 E-value=19 Score=28.63 Aligned_cols=38 Identities=13% Similarity=0.306 Sum_probs=32.3
Q ss_pred CCCcEEEEeccHHHHHHHHHHHHhCCCe-eEEecCCCCH
Q psy437 33 SGQSGIVYCLTRKECDSVAAALAQERIN-AISYHAGLAD 70 (184)
Q Consensus 33 ~~~~~IIf~~tr~~~e~la~~L~~~gi~-~~~~hg~l~~ 70 (184)
+..+.++||.+=..|+..+..|.+.|+. +..+.||+..
T Consensus 170 k~k~Iv~yCtgGiRs~kAa~~L~~~Gf~~Vy~L~GGi~~ 208 (247)
T PRK01415 170 KGKKIAMVCTGGIRCEKSTSLLKSIGYDEVYHLKGGILQ 208 (247)
T ss_pred CCCeEEEECCCChHHHHHHHHHHHcCCCcEEEechHHHH
Confidence 5567889999988999999999999996 7778999754
No 451
>PF09633 DUF2023: Protein of unknown function (DUF2023); InterPro: IPR018594 This protein of approx.120 residues consists of three beta strands and five alpha helices, thought to fold into a homo-dimer. ; PDB: 2GUK_B.
Probab=52.03 E-value=53 Score=22.37 Aligned_cols=38 Identities=11% Similarity=0.031 Sum_probs=28.8
Q ss_pred HHHHhccCceEEEEEeecccHHHHHHHHHhcCCcEEEe
Q psy437 77 QMKWISNKVHVGHWTVVSKECDSVAAALAQERINAISY 114 (184)
Q Consensus 77 ~~~f~~g~~~vlVaT~tr~~~e~~a~gL~~~gi~~~vi 114 (184)
+-+|.+|--+.+.+|-+++..+.+-..|...||+-.+.
T Consensus 7 IYEy~KGvR~LvL~T~~~~~~~~~~~rL~~~~I~y~iq 44 (101)
T PF09633_consen 7 IYEYKKGVRQLVLHTLPKRYEEFAIARLERQGIDYFIQ 44 (101)
T ss_dssp HHHHHCTS-SEEEEEEEGGGHHHHHHHHHHTT--EEEE
T ss_pred HHHhhhhhhhHhhhhCCHhhHHHHHHHHHHCCCCEEEE
Confidence 34677888888999999999999999999999994433
No 452
>cd06167 LabA_like LabA_like proteins. A well conserved group of bacterial proteins with no defined function. LabA, a member from Synechococcus elongatus PCC 7942, has been shown to play a role in cyanobacterial circadian timing. It is required for negative feedback regulation of the autokinase/autophosphatase KaiC, a central component of the circadian clock system. In particular, LabA seems necessary for KaiC-dependent repression of gene expression.
Probab=51.77 E-value=82 Score=22.17 Aligned_cols=97 Identities=8% Similarity=-0.018 Sum_probs=59.0
Q ss_pred HHHHHHHHHhhcCCCcEEEEeccHH--HHHHHHHHHHhCCCeeEEecC--------CCCHHHHHHHHHHHhccCceEEEE
Q psy437 21 LKEVISLIKAKYSGQSGIVYCLTRK--ECDSVAAALAQERINAISYHA--------GLADKLRNEVQMKWISNKVHVGHW 90 (184)
Q Consensus 21 ~~~L~~~l~~~~~~~~~IIf~~tr~--~~e~la~~L~~~gi~~~~~hg--------~l~~~~R~~~~~~f~~g~~~vlVa 90 (184)
+..|.+.+.........-+|.+... ....+.+.|+..|+.+....+ +.+..--..+++....+....+|-
T Consensus 26 ~~~l~~~~~~~~~~~~~r~y~~~~~~~~~~~~~~~L~~~g~~~~~~~~~~~~~~~~~~D~~l~~d~~~~~~~~~~d~ivL 105 (149)
T cd06167 26 YRKLLEFLRDGGEIVLARAYGNWTSPERQRGFLDALRRLGFEPIQKPLRTRGSGKKGVDVALAIDALELAYKRRIDTIVL 105 (149)
T ss_pred HHHHHHHHHhCCeEEEEEEEEecCCchhHHHHHHHHHHCCcEEEEEcceecCCcccCccHHHHHHHHHHhhhcCCCEEEE
Confidence 4455555543211233455776653 678888999999998765542 122222333445555556655555
Q ss_pred EeecccHHHHHHHHHhcCCcEEEeeCC
Q psy437 91 TVVSKECDSVAAALAQERINAISYHAG 117 (184)
Q Consensus 91 T~tr~~~e~~a~gL~~~gi~~~vih~~ 117 (184)
.++-++---+++.|...|.++.++...
T Consensus 106 vSgD~Df~~~i~~lr~~G~~V~v~~~~ 132 (149)
T cd06167 106 VSGDSDFVPLVERLRELGKRVIVVGFE 132 (149)
T ss_pred EECCccHHHHHHHHHHcCCEEEEEccC
Confidence 555667777788888899987777664
No 453
>TIGR01481 ccpA catabolite control protein A. Catabolite control protein A is a LacI family global transcriptional regulator found in Gram-positive bacteria. CcpA is involved in repressing carbohydrate utilization genes [ex: alpha-amylase (amyE), acetyl-coenzyme A synthase (acsA)] and in activating genes involved in transporting excess carbon from the cell [ex: acetate kinase (ackA), alpha-acetolactate synthase (alsS)]. Additionally, disruption of CcpA in Bacillus megaterium, Staphylococcus xylosus, Lactobacillus casei and Lactocacillus pentosus also decreases growth rate, which suggests CcpA is involved in the regulation of other metabolic pathways.
Probab=50.95 E-value=1.3e+02 Score=24.08 Aligned_cols=65 Identities=8% Similarity=0.021 Sum_probs=31.9
Q ss_pred HHHHHHhCCCeeEEecCCCCHHHHHHHHHHHhccCceEEEEEeecccHHHHHHHHHhcCCcEEEee
Q psy437 50 VAAALAQERINAISYHAGLADKLRNEVQMKWISNKVHVGHWTVVSKECDSVAAALAQERINAISYH 115 (184)
Q Consensus 50 la~~L~~~gi~~~~~hg~l~~~~R~~~~~~f~~g~~~vlVaT~tr~~~e~~a~gL~~~gi~~~vih 115 (184)
+.+.+.+.|+....+.+..+.+.-...++.+....+..+|..++... +.+...|...+++++.+.
T Consensus 81 i~~~~~~~g~~~~i~~~~~~~~~~~~~~~~l~~~~vdGiIi~~~~~~-~~~~~~l~~~~iPvV~~~ 145 (329)
T TIGR01481 81 IEDIATMYKYNIILSNSDEDPEKEVQVLNTLLSKQVDGIIFMGGTIT-EKLREEFSRSPVPVVLAG 145 (329)
T ss_pred HHHHHHHcCCEEEEEeCCCCHHHHHHHHHHHHhCCCCEEEEeCCCCC-hHHHHHHHhcCCCEEEEe
Confidence 33444556666665554444443344555666666665555443211 223344555566643343
No 454
>COG0426 FpaA Uncharacterized flavoproteins [Energy production and conversion]
Probab=50.89 E-value=92 Score=26.58 Aligned_cols=100 Identities=15% Similarity=0.101 Sum_probs=61.7
Q ss_pred cEEEEe----ccHHHHHHHHHHHHhCCCeeEEecCCCCHHHHHHHHHHHhccCceEEEEEeec--ccHHHHHHHH-----
Q psy437 36 SGIVYC----LTRKECDSVAAALAQERINAISYHAGLADKLRNEVQMKWISNKVHVGHWTVVS--KECDSVAAAL----- 104 (184)
Q Consensus 36 ~~IIf~----~tr~~~e~la~~L~~~gi~~~~~hg~l~~~~R~~~~~~f~~g~~~vlVaT~tr--~~~e~~a~gL----- 104 (184)
-.|+|+ +|...++.+++.|.+.|+.+..+.-. ..++.++++....-+ -++|.++|- +....+...|
T Consensus 249 V~l~Y~smyg~T~~ma~aiaegl~~~gv~v~~~~~~--~~~~~eI~~~i~~a~-~~vvGsPT~~~~~~p~i~~~l~~v~~ 325 (388)
T COG0426 249 VDLIYDSMYGNTEKMAQAIAEGLMKEGVDVEVINLE--DADPSEIVEEILDAK-GLVVGSPTINGGAHPPIQTALGYVLA 325 (388)
T ss_pred EEEEEecccCCHHHHHHHHHHHhhhcCCceEEEEcc--cCCHHHHHHHHhhcc-eEEEecCcccCCCCchHHHHHHHHHh
Confidence 356665 78899999999999999998887643 336777777766544 478999974 2222222222
Q ss_pred -HhcCCcE-EEeeCCCChHHHHHHHHHhhCCCceEE
Q psy437 105 -AQERINA-ISYHAGLADKLRNEVQMKWISNKVHLY 138 (184)
Q Consensus 105 -~~~gi~~-~vih~~~p~~~r~~~~~~f~~~~~~v~ 138 (184)
..++=.+ .+=.+|=....-..+++.|++-..++.
T Consensus 326 ~~~~~k~~~vfgS~GW~g~av~~i~~~l~~~g~~~~ 361 (388)
T COG0426 326 LAPKNKLAGVFGSYGWSGEAVDLIEEKLKDLGFEFG 361 (388)
T ss_pred ccCcCceEEEEeccCCCCcchHHHHHHHHhcCcEEe
Confidence 1111112 333556566666677777776554443
No 455
>KOG0385|consensus
Probab=50.87 E-value=98 Score=29.09 Aligned_cols=93 Identities=5% Similarity=-0.040 Sum_probs=72.6
Q ss_pred HHHHHHHhccCceEEEEEeecccHHHHHHHHHhcCCcEEEeeCCCChHHHHHHHHHhhCCCceEEEE----------Eec
Q psy437 74 NEVQMKWISNKVHVGHWTVVSKECDSVAAALAQERINAISYHAGLADKLRNEVQMKWISNKVHLYNV----------WKI 143 (184)
Q Consensus 74 ~~~~~~f~~g~~~vlVaT~tr~~~e~~a~gL~~~gi~~~vih~~~p~~~r~~~~~~f~~~~~~v~va----------~D~ 143 (184)
.+.+..+..+..+|||++---.+.+.+--++.-+|...+-+-|..|.+.|......|-.......|+ ++.
T Consensus 477 DkLL~~Lk~~GhRVLIFSQmt~mLDILeDyc~~R~y~ycRiDGSt~~eeR~~aI~~fn~~~s~~FiFlLSTRAGGLGINL 556 (971)
T KOG0385|consen 477 DKLLPKLKEQGHRVLIFSQMTRMLDILEDYCMLRGYEYCRLDGSTSHEEREDAIEAFNAPPSEKFIFLLSTRAGGLGINL 556 (971)
T ss_pred HHHHHHHHhCCCeEEEeHHHHHHHHHHHHHHHhcCceeEeecCCCCcHHHHHHHHhcCCCCcceEEEEEecccccccccc
Confidence 3456667778889999988666777777777788999888999999999999999997766444444 477
Q ss_pred CCccEEEecCCCCCccccccccc
Q psy437 144 QWKRIIWIHSLVLIKPDYLPPIL 166 (184)
Q Consensus 144 ~~vr~v~~~~~p~~~e~y~~~i~ 166 (184)
.--..||.||-=..+..-+|-.=
T Consensus 557 ~aADtVIlyDSDWNPQ~DLQAmD 579 (971)
T KOG0385|consen 557 TAADTVILYDSDWNPQVDLQAMD 579 (971)
T ss_pred ccccEEEEecCCCCchhhhHHHH
Confidence 77788999988777777776553
No 456
>PLN02417 dihydrodipicolinate synthase
Probab=50.45 E-value=1.3e+02 Score=24.10 Aligned_cols=71 Identities=10% Similarity=-0.106 Sum_probs=43.8
Q ss_pred CCHHHHHHHHHHHh---ccCceEEEEEee--cccHHHHHHHHHhcCCcEEEee---CCCC--hHHHHHHHHHhhCCCceE
Q psy437 68 LADKLRNEVQMKWI---SNKVHVGHWTVV--SKECDSVAAALAQERINAISYH---AGLA--DKLRNEVQMKWISNKVHL 137 (184)
Q Consensus 68 l~~~~R~~~~~~f~---~g~~~vlVaT~t--r~~~e~~a~gL~~~gi~~~vih---~~~p--~~~r~~~~~~f~~~~~~v 137 (184)
|+.+||.++++... .|+++|++.+.+ -.++-.+|+.-...|.++.++. |..| .....|..+.-... ++
T Consensus 51 ls~~Er~~~~~~~~~~~~~~~pvi~gv~~~~t~~~i~~a~~a~~~Gadav~~~~P~y~~~~~~~i~~~f~~va~~~--pi 128 (280)
T PLN02417 51 MSWDEHIMLIGHTVNCFGGKIKVIGNTGSNSTREAIHATEQGFAVGMHAALHINPYYGKTSQEGLIKHFETVLDMG--PT 128 (280)
T ss_pred CCHHHHHHHHHHHHHHhCCCCcEEEECCCccHHHHHHHHHHHHHcCCCEEEEcCCccCCCCHHHHHHHHHHHHhhC--CE
Confidence 67889999887766 467888877664 3455566666678888854433 3333 34445555544433 66
Q ss_pred EEE
Q psy437 138 YNV 140 (184)
Q Consensus 138 ~va 140 (184)
++.
T Consensus 129 ~lY 131 (280)
T PLN02417 129 IIY 131 (280)
T ss_pred EEE
Confidence 554
No 457
>PRK13019 clpS ATP-dependent Clp protease adaptor; Reviewed
Probab=50.36 E-value=70 Score=21.43 Aligned_cols=30 Identities=10% Similarity=0.132 Sum_probs=24.3
Q ss_pred cCCCcEEEEeccHHHHHHHHHHHHhCCCee
Q psy437 32 YSGQSGIVYCLTRKECDSVAAALAQERINA 61 (184)
Q Consensus 32 ~~~~~~IIf~~tr~~~e~la~~L~~~gi~~ 61 (184)
+..+++++..-+++.||..+..|...|+.+
T Consensus 61 H~~G~avv~~~~~E~AE~~~~~l~~~glt~ 90 (94)
T PRK13019 61 HKEGSAVVWVGPLEQAELYHQQLTDAGLTM 90 (94)
T ss_pred hcCCcEEEEEecHHHHHHHHHHHHHccccc
Confidence 467788999989999999998888877543
No 458
>KOG1123|consensus
Probab=50.35 E-value=37 Score=30.25 Aligned_cols=84 Identities=8% Similarity=-0.033 Sum_probs=52.1
Q ss_pred ceEEEEEeecccHHHHHHHHHhcCCcEEEeeCCCChHHHHHHHHHhhCCCc--eEEEE------EecCCccEEEecC-CC
Q psy437 85 VHVGHWTVVSKECDSVAAALAQERINAISYHAGLADKLRNEVQMKWISNKV--HLYNV------WKIQWKRIIWIHS-LV 155 (184)
Q Consensus 85 ~~vlVaT~tr~~~e~~a~gL~~~gi~~~vih~~~p~~~r~~~~~~f~~~~~--~v~va------~D~~~vr~v~~~~-~p 155 (184)
-+|||+.+.--.....|-.|.+ -.|-|..|+..|..+++.|..+.. +|++. ||.|.-.-+|..+ --
T Consensus 544 DKiIVFsDnvfALk~YAikl~K-----pfIYG~Tsq~ERm~ILqnFq~n~~vNTIFlSKVgDtSiDLPEAnvLIQISSH~ 618 (776)
T KOG1123|consen 544 DKIIVFSDNVFALKEYAIKLGK-----PFIYGPTSQNERMKILQNFQTNPKVNTIFLSKVGDTSIDLPEANVLIQISSHG 618 (776)
T ss_pred CeEEEEeccHHHHHHHHHHcCC-----ceEECCCchhHHHHHHHhcccCCccceEEEeeccCccccCCcccEEEEEcccc
Confidence 3688888843222222333333 345688999999999999997753 33333 6998877666433 33
Q ss_pred CCcccccccccc-ccCCcc
Q psy437 156 LIKPDYLPPILD-LRLGRE 173 (184)
Q Consensus 156 ~~~e~y~~~i~~-~~~~r~ 173 (184)
-|--+-.||.++ +|+.|.
T Consensus 619 GSRRQEAQRLGRILRAKk~ 637 (776)
T KOG1123|consen 619 GSRRQEAQRLGRILRAKKR 637 (776)
T ss_pred cchHHHHHHHHHHHHHhhc
Confidence 444555666665 366654
No 459
>cd01521 RHOD_PspE2 Member of the Rhodanese Homology Domain superfamily. This CD includes the putative rhodanese-like protein, Psp2, of Yersinia pestis biovar Medievalis and other similar uncharacterized proteins.
Probab=50.31 E-value=28 Score=23.36 Aligned_cols=37 Identities=14% Similarity=0.017 Sum_probs=28.4
Q ss_pred cCceEEEEEeecc--cHHHHHHHHHhcCCcEEEeeCCCC
Q psy437 83 NKVHVGHWTVVSK--ECDSVAAALAQERINAISYHAGLA 119 (184)
Q Consensus 83 g~~~vlVaT~tr~--~~e~~a~gL~~~gi~~~vih~~~p 119 (184)
...+|+++|.+-. ....++..|...|+++.++.+|+.
T Consensus 63 ~~~~vvvyc~~g~~~~s~~~a~~l~~~G~~v~~l~GG~~ 101 (110)
T cd01521 63 KEKLFVVYCDGPGCNGATKAALKLAELGFPVKEMIGGLD 101 (110)
T ss_pred CCCeEEEEECCCCCchHHHHHHHHHHcCCeEEEecCCHH
Confidence 4567888887543 567888899889998778888874
No 460
>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]
Probab=50.27 E-value=1.3e+02 Score=24.16 Aligned_cols=72 Identities=13% Similarity=0.075 Sum_probs=53.4
Q ss_pred HHHHHHHHHhhcCCCcEEEEeccHHHHHHHHHHHHhC-CCeeEEecCCCCHH-HHHHHHHHHhcc--CceEEEEEeec
Q psy437 21 LKEVISLIKAKYSGQSGIVYCLTRKECDSVAAALAQE-RINAISYHAGLADK-LRNEVQMKWISN--KVHVGHWTVVS 94 (184)
Q Consensus 21 ~~~L~~~l~~~~~~~~~IIf~~tr~~~e~la~~L~~~-gi~~~~~hg~l~~~-~R~~~~~~f~~g--~~~vlVaT~tr 94 (184)
=..+...+.+ .+...|+..++.+..+.+++.|... +..+.++-.+++.. +...+.+..... .+.+||-.-++
T Consensus 19 G~~~A~~lA~--~g~~liLvaR~~~kL~~la~~l~~~~~v~v~vi~~DLs~~~~~~~l~~~l~~~~~~IdvLVNNAG~ 94 (265)
T COG0300 19 GAELAKQLAR--RGYNLILVARREDKLEALAKELEDKTGVEVEVIPADLSDPEALERLEDELKERGGPIDVLVNNAGF 94 (265)
T ss_pred HHHHHHHHHH--CCCEEEEEeCcHHHHHHHHHHHHHhhCceEEEEECcCCChhHHHHHHHHHHhcCCcccEEEECCCc
Confidence 3456666655 5667788889999999999999864 68888888898864 445555555553 78899987776
No 461
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=50.14 E-value=24 Score=29.48 Aligned_cols=38 Identities=21% Similarity=0.392 Sum_probs=31.0
Q ss_pred CCCcEEEEeccHHHHHHHHHHHHhCCCe-eEEecCCCCH
Q psy437 33 SGQSGIVYCLTRKECDSVAAALAQERIN-AISYHAGLAD 70 (184)
Q Consensus 33 ~~~~~IIf~~tr~~~e~la~~L~~~gi~-~~~~hg~l~~ 70 (184)
+..+.++||.+-..+...+..|.+.|+. +..+.||++.
T Consensus 313 ~~~~IvvyC~~G~rS~~Aa~~L~~~G~~nV~~L~GGi~~ 351 (355)
T PRK05597 313 AGDEVVVYCAAGVRSAQAVAILERAGYTGMSSLDGGIEG 351 (355)
T ss_pred CCCeEEEEcCCCHHHHHHHHHHHHcCCCCEEEecCcHHH
Confidence 3456788999988888999999999996 6778999743
No 462
>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family. This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.
Probab=50.09 E-value=53 Score=19.43 Aligned_cols=50 Identities=16% Similarity=-0.005 Sum_probs=33.0
Q ss_pred eccHHHHHHHHHHHHhCCCeeEEecCCCCHHHHHHHHHHHhccCceEEEE
Q psy437 41 CLTRKECDSVAAALAQERINAISYHAGLADKLRNEVQMKWISNKVHVGHW 90 (184)
Q Consensus 41 ~~tr~~~e~la~~L~~~gi~~~~~hg~l~~~~R~~~~~~f~~g~~~vlVa 90 (184)
.+....|..+...|.+.++......-.-+++.+....+.+....+++++.
T Consensus 7 ~~~C~~C~~~~~~l~~~~i~~~~vdi~~~~~~~~~~~~~~~~~~vP~~~~ 56 (74)
T TIGR02196 7 TPWCPPCKKAKEYLTSKGIAFEEIDVEKDSAAREEVLKVLGQRGVPVIVI 56 (74)
T ss_pred CCCChhHHHHHHHHHHCCCeEEEEeccCCHHHHHHHHHHhCCCcccEEEE
Confidence 35577788888888888887766654444455555666665566676653
No 463
>KOG1015|consensus
Probab=49.91 E-value=47 Score=32.01 Aligned_cols=114 Identities=9% Similarity=0.016 Sum_probs=73.0
Q ss_pred ChHHHHHHHHHhh-cCCCcEEEEeccHHHHHHHHHHHHhC----------------------CCeeEEecCCCCHHHHHH
Q psy437 19 NVLKEVISLIKAK-YSGQSGIVYCLTRKECDSVAAALAQE----------------------RINAISYHAGLADKLRNE 75 (184)
Q Consensus 19 ~k~~~L~~~l~~~-~~~~~~IIf~~tr~~~e~la~~L~~~----------------------gi~~~~~hg~l~~~~R~~ 75 (184)
.|+-.|+++|+.. .-+.+.+||..+-...+-|..+|... |..-.-+.|..+.++|.+
T Consensus 1126 gKmiLLleIL~mceeIGDKlLVFSQSL~SLdLIe~fLe~v~r~gk~~~d~~~~~~~eGkW~~GkDyyriDGst~s~~R~k 1205 (1567)
T KOG1015|consen 1126 GKMILLLEILRMCEEIGDKLLVFSQSLISLDLIEDFLELVSREGKEDKDKPLIYKGEGKWLRGKDYYRLDGSTTSQSRKK 1205 (1567)
T ss_pred cceehHHHHHHHHHHhcceeEEeecccchhHHHHHHHHhhcccCccccccccccccccceecCCceEEecCcccHHHHHH
Confidence 4777888887532 25778999999999888888888631 233445678888999999
Q ss_pred HHHHHhcc---Cc-eEEEEEeecccHHHHHHHHHhcCCcE-EEeeCCC---ChHHHHHHHHHhhCCCc-eEEEE
Q psy437 76 VQMKWISN---KV-HVGHWTVVSKECDSVAAALAQERINA-ISYHAGL---ADKLRNEVQMKWISNKV-HLYNV 140 (184)
Q Consensus 76 ~~~~f~~g---~~-~vlVaT~tr~~~e~~a~gL~~~gi~~-~vih~~~---p~~~r~~~~~~f~~~~~-~v~va 140 (184)
..++|-.- .. -.||.|. |.+|.+.=+-| .||=+|- |.-.-.-+-|.|+=|.. +|++.
T Consensus 1206 ~~~~FNdp~NlRaRl~LISTR--------AGsLGiNLvAANRVIIfDasWNPSyDtQSIFRvyRfGQtKPvyiY 1271 (1567)
T KOG1015|consen 1206 WAEEFNDPTNLRARLFLISTR--------AGSLGINLVAANRVIIFDASWNPSYDTQSIFRVYRFGQTKPVYIY 1271 (1567)
T ss_pred HHHHhcCcccceeEEEEEeec--------cCccccceeecceEEEEecccCCccchHHHHHHHhhcCcCceeeh
Confidence 99999752 22 2578888 66775543322 3333333 23333445566665554 45444
No 464
>cd06317 PBP1_ABC_sugar_binding_like_8 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Pperiplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=49.78 E-value=1.2e+02 Score=23.31 Aligned_cols=69 Identities=13% Similarity=0.001 Sum_probs=39.5
Q ss_pred HHHHHHhCCCeeEEecCCCCHHHHHHHHHHHhccCceEEEEEeeccc-HHHHHHHHHhcCCcEEEeeCCC
Q psy437 50 VAAALAQERINAISYHAGLADKLRNEVQMKWISNKVHVGHWTVVSKE-CDSVAAALAQERINAISYHAGL 118 (184)
Q Consensus 50 la~~L~~~gi~~~~~hg~l~~~~R~~~~~~f~~g~~~vlVaT~tr~~-~e~~a~gL~~~gi~~~vih~~~ 118 (184)
+...+.+.|+.+..+-+.-+.+.-.+.++.+....+..||..+...+ +......+...++++..++...
T Consensus 22 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiii~~~~~~~~~~~l~~~~~~~iPvV~~~~~~ 91 (275)
T cd06317 22 FQAAAEEDGVEVIVLDANGDVARQAAQVEDLIAQKVDGIILWPTDGQAYIPGLRKAKQAGIPVVITNSNI 91 (275)
T ss_pred HHHHHHhcCCEEEEEcCCcCHHHHHHHHHHHHHcCCCEEEEecCCccccHHHHHHHHHCCCcEEEeCCCC
Confidence 33444456777766655545544445566666666776655553322 2334455677888866666544
No 465
>cd00951 KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also called 5-keto-4-deoxy-glucarate dehydratase (KDGDH), which is member of dihydrodipicolinate synthase (DHDPS) family that comprises several pyruvate-dependent class I aldolases. The enzyme is involved in glucarate metabolism, and its mechanism presumbly involves a Schiff-base intermediate similar to members of DHDPS family. While in the case of Pseudomonas sp. 5-dehydro-4-deoxy-D-glucarate is degraded by KDGDH to 2,5-dioxopentanoate, in certain species of Enterobacteriaceae it is degraded instead to pyruvate and glycerate.
Probab=49.42 E-value=1.4e+02 Score=24.07 Aligned_cols=93 Identities=13% Similarity=-0.006 Sum_probs=53.6
Q ss_pred HHHHHHHHhCCCeeEEecC------CCCHHHHHHHHHHHhc---cCceEEEEEee-cccHHHHHHHHHhcCCcEEEee--
Q psy437 48 DSVAAALAQERINAISYHA------GLADKLRNEVQMKWIS---NKVHVGHWTVV-SKECDSVAAALAQERINAISYH-- 115 (184)
Q Consensus 48 e~la~~L~~~gi~~~~~hg------~l~~~~R~~~~~~f~~---g~~~vlVaT~t-r~~~e~~a~gL~~~gi~~~vih-- 115 (184)
+.+.+++.+.|+...+.-| .|+.+||.++++.... |+++|++.+.. -.++-.+++.....|+++.++-
T Consensus 24 ~~l~~~l~~~Gv~gi~v~GstGE~~~Ls~eEr~~l~~~~~~~~~~~~pvi~gv~~~t~~~i~~a~~a~~~Gad~v~~~pP 103 (289)
T cd00951 24 RAHVEWLLSYGAAALFAAGGTGEFFSLTPDEYAQVVRAAVEETAGRVPVLAGAGYGTATAIAYAQAAEKAGADGILLLPP 103 (289)
T ss_pred HHHHHHHHHcCCCEEEECcCCcCcccCCHHHHHHHHHHHHHHhCCCCCEEEecCCCHHHHHHHHHHHHHhCCCEEEECCC
Confidence 3344444455555444444 2778899988876653 67788876542 2344445566677788854331
Q ss_pred --CCCC-hHHHHHHHHHhhCCCceEEEE
Q psy437 116 --AGLA-DKLRNEVQMKWISNKVHLYNV 140 (184)
Q Consensus 116 --~~~p-~~~r~~~~~~f~~~~~~v~va 140 (184)
...+ +....|.......-.++|++.
T Consensus 104 ~y~~~~~~~i~~~f~~v~~~~~~pi~lY 131 (289)
T cd00951 104 YLTEAPQEGLYAHVEAVCKSTDLGVIVY 131 (289)
T ss_pred CCCCCCHHHHHHHHHHHHhcCCCCEEEE
Confidence 2222 334556666555556777776
No 466
>TIGR03167 tRNA_sel_U_synt tRNA 2-selenouridine synthase. The Escherichia coli YbbB protein was shown to encode a selenophosphate-dependent tRNA 2-selenouridine synthase, essential for modification of some tRNAs to replace a sulfur atom with selenium. This enzyme works with SelD, the selenium donor protein, which also acts in selenocysteine incorporation. Although the members of this protein family show a fairly deep split, sequences from both sides of the split are supported by co-occurence with, and often proximity to, the selD gene.
Probab=49.35 E-value=52 Score=27.08 Aligned_cols=73 Identities=18% Similarity=0.108 Sum_probs=43.4
Q ss_pred CcEEEEec-cHHHHHHHHHHHHhCCCeeEEecCCCCHHHHHHHHHHHhc--cCceEEE-EEeecccHHHHHHHHHhcC
Q psy437 35 QSGIVYCL-TRKECDSVAAALAQERINAISYHAGLADKLRNEVQMKWIS--NKVHVGH-WTVVSKECDSVAAALAQER 108 (184)
Q Consensus 35 ~~~IIf~~-tr~~~e~la~~L~~~gi~~~~~hg~l~~~~R~~~~~~f~~--g~~~vlV-aT~tr~~~e~~a~gL~~~g 108 (184)
...++||. +-..+...+..|...|+.+..+.||+..- +......+.. ...+.++ .-.+--..+.++..|...|
T Consensus 75 ~~vvvyC~~gG~RS~~aa~~L~~~G~~v~~L~GG~~aw-~~~~~~~~~~~~~~~~~~vl~g~tg~gKt~Ll~~L~~~~ 151 (311)
T TIGR03167 75 PQPLLYCWRGGMRSGSLAWLLAQIGFRVPRLEGGYKAY-RRFVIDQLEELPQPFPLIVLGGMTGSGKTELLHALANAG 151 (311)
T ss_pred CcEEEEECCCChHHHHHHHHHHHcCCCEEEecChHHHH-HHhhhhhhhccCCCCceeccCCCCCcCHHHHHHHHhcCC
Confidence 34889995 55667888999999999988899997643 2222233321 2222222 2122234455666666555
No 467
>cd06306 PBP1_TorT-like TorT-like proteins, a periplasmic binding protein family that activates induction of the Tor respiratory system upon trimethylamine N-oxide (TMAO) electron-acceptor binding in bacteria. TorT-like proteins, a periplasmic binding protein family that activates induction of the Tor respiratory system upon trimethylamine N-oxide (TMAO) electron-acceptor binding in bacteria. The Tor respiratory system is consists of three proteins (TorC, TorA, and TorD) and is induced in the presence of TMAO. The TMAO control is tightly regulated by three proteins: TorS, TorT, and TorR. Thus, the disruption of any of these proteins can abolish the Tor respiratory induction. TorT shares homology with the sugar-binding domain of the type I periplasmic binding proteins. The members of TorT-like family bind TMAO or related compounds and are predicted to be involved in signal transduction and/or substrate transport.
Probab=49.04 E-value=1.2e+02 Score=23.39 Aligned_cols=68 Identities=9% Similarity=-0.113 Sum_probs=35.1
Q ss_pred HHHHHHHHhCCCeeEEecCCC--CHHHHHHHHHHHhccCceEEEEEeecccHHHHHHHHHhcCCcEEEee
Q psy437 48 DSVAAALAQERINAISYHAGL--ADKLRNEVQMKWISNKVHVGHWTVVSKECDSVAAALAQERINAISYH 115 (184)
Q Consensus 48 e~la~~L~~~gi~~~~~hg~l--~~~~R~~~~~~f~~g~~~vlVaT~tr~~~e~~a~gL~~~gi~~~vih 115 (184)
.-+.+.+++.|+.+....++- +.+.-...++.+.+..+..||.++...+.......+...|+++.++.
T Consensus 19 ~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~i~~~~~~~vdgiI~~~~~~~~~~~~~~~~~~giPvV~~~ 88 (268)
T cd06306 19 YGMVEEAKRLGVSLKLLEAGGYPNLAKQIAQLEDCAAWGADAILLGAVSPDGLNEILQQVAASIPVIALV 88 (268)
T ss_pred HHHHHHHHHcCCEEEEecCCCCCCHHHHHHHHHHHHHcCCCEEEEcCCChhhHHHHHHHHHCCCCEEEec
Confidence 344455556677776655432 23334456666666667666665543221111233456677744443
No 468
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=49.01 E-value=1.9e+02 Score=26.67 Aligned_cols=72 Identities=11% Similarity=0.031 Sum_probs=50.6
Q ss_pred CceEEEEEeecccHHHHHHHHHh-cCCcEEEeeCCCChHHHHHHHHHhh----CCCceEEEE-------EecCC--ccEE
Q psy437 84 KVHVGHWTVVSKECDSVAAALAQ-ERINAISYHAGLADKLRNEVQMKWI----SNKVHLYNV-------WKIQW--KRII 149 (184)
Q Consensus 84 ~~~vlVaT~tr~~~e~~a~gL~~-~gi~~~vih~~~p~~~r~~~~~~f~----~~~~~v~va-------~D~~~--vr~v 149 (184)
...++|..++....+.++..|.. .+.+ +..++.. .+..+.+.|+ .++-.|+++ +|.|+ .+.|
T Consensus 534 ~gg~LVlFtSy~~l~~v~~~l~~~~~~~-ll~Q~~~---~~~~ll~~f~~~~~~~~~~VL~g~~sf~EGVD~pGd~l~~v 609 (697)
T PRK11747 534 HKGSLVLFASRRQMQKVADLLPRDLRLM-LLVQGDQ---PRQRLLEKHKKRVDEGEGSVLFGLQSFAEGLDLPGDYLTQV 609 (697)
T ss_pred CCCEEEEeCcHHHHHHHHHHHHHhcCCc-EEEeCCc---hHHHHHHHHHHHhccCCCeEEEEeccccccccCCCCceEEE
Confidence 33479999999999999988853 4555 6667643 3555665555 455567776 48876 7999
Q ss_pred EecCCCCCcc
Q psy437 150 WIHSLVLIKP 159 (184)
Q Consensus 150 ~~~~~p~~~e 159 (184)
|...+|-..+
T Consensus 610 II~kLPF~~p 619 (697)
T PRK11747 610 IITKIPFAVP 619 (697)
T ss_pred EEEcCCCCCC
Confidence 9999997543
No 469
>cd00578 L-fuc_L-ara-isomerases L-fucose isomerase (FucIase) and L-arabinose isomerase (AI) family; composed of FucIase, AI and similar proteins. FucIase converts L-fucose, an aldohexose, to its ketose form, which prepares it for aldol cleavage (similar to the isomerization of glucose in glycolysis). L-fucose (or 6-deoxy-L-galactose) is found in various oligo- and polysaccharides in mammals, bacteria and plants. AI catalyzes the isomerization of L-arabinose to L-ribulose, the first reaction in its conversion to D-xylulose-5-phosphate, an intermediate in the pentose phosphate pathway, which allows L-arabinose to be used as a carbon source. AI can also convert D-galactose to D-tagatose at elevated temperatures in the presence of divalent metal ions. D-tagatose, rarely found in nature, is of commercial interest as a low-calorie sugar substitute.
Probab=48.85 E-value=1.8e+02 Score=25.11 Aligned_cols=96 Identities=13% Similarity=-0.007 Sum_probs=51.9
Q ss_pred hHHHHHHHHHhhcCCCcEEEEec----cHHHHHHHHHHHHhCCCeeEE-ecCCCCHHHHHHHHHHHhccCceEEEEEeec
Q psy437 20 VLKEVISLIKAKYSGQSGIVYCL----TRKECDSVAAALAQERINAIS-YHAGLADKLRNEVQMKWISNKVHVGHWTVVS 94 (184)
Q Consensus 20 k~~~L~~~l~~~~~~~~~IIf~~----tr~~~e~la~~L~~~gi~~~~-~hg~l~~~~R~~~~~~f~~g~~~vlVaT~tr 94 (184)
..+.+.+.|++ .+ --+|+.+ |.+++...++.+++.++.... .++....+. .++..++.-+.++|+.....
T Consensus 24 ~~~~~~~~l~~--~~-~~vv~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~~~tf~~~~--~~~~~~~~~~~Pvll~a~~~ 98 (452)
T cd00578 24 YAREVADLLNE--LP-VEVVDKPEVTGTPDEARKAAEEFNEANCDGLIVWMHTFGPAK--MWIAGLSELRKPVLLLATQF 98 (452)
T ss_pred HHHHHHHHHhc--CC-ceEEecCcccCCHHHHHHHHHHHhhcCCcEEEEcccccccHH--HHHHHHHhcCCCEEEEeCCC
Confidence 34455555643 22 2344332 777788888888877655332 333333332 22222344456776555332
Q ss_pred --------------ccHHHHHHHHHhcCCcEEEeeCCCCh
Q psy437 95 --------------KECDSVAAALAQERINAISYHAGLAD 120 (184)
Q Consensus 95 --------------~~~e~~a~gL~~~gi~~~vih~~~p~ 120 (184)
--.-.++..|...|++..++++..+.
T Consensus 99 ~~~~~~~~~~~~s~~g~~~~~~~l~r~gi~~~~v~g~~~d 138 (452)
T cd00578 99 NREIPDFMNLNQSACGLREFGNILARLGIPFKVVYGHWKD 138 (452)
T ss_pred CCCCCchhhhhcchhhhHHHHHHHHHcCCceeEEECCCCC
Confidence 12345667778889997666666544
No 470
>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain. The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A ....
Probab=48.77 E-value=38 Score=24.75 Aligned_cols=26 Identities=19% Similarity=0.077 Sum_probs=21.3
Q ss_pred CCCcEEEEeccHHHHHHHHHHHHhCC
Q psy437 33 SGQSGIVYCLTRKECDSVAAALAQER 58 (184)
Q Consensus 33 ~~~~~IIf~~tr~~~e~la~~L~~~g 58 (184)
.+.+++|..+||..++++.+.|+...
T Consensus 32 ~~~rvLvL~PTRvva~em~~aL~~~~ 57 (148)
T PF07652_consen 32 RRLRVLVLAPTRVVAEEMYEALKGLP 57 (148)
T ss_dssp TT--EEEEESSHHHHHHHHHHTTTSS
T ss_pred ccCeEEEecccHHHHHHHHHHHhcCC
Confidence 56789999999999999999997554
No 471
>cd01525 RHOD_Kc Member of the Rhodanese Homology Domain superfamily. Included in this CD are the rhodanese-like domains found C-terminal of the serine/threonine protein kinases catalytic (S_TKc) domain and the Tre-2, BUB2p, Cdc16p (TBC) domain. The putative active site Cys residue is not present in this CD.
Probab=48.75 E-value=36 Score=22.33 Aligned_cols=36 Identities=14% Similarity=0.036 Sum_probs=27.3
Q ss_pred CceEEEEEeecccHHHHHHHHHhcCCc-EEEeeCCCC
Q psy437 84 KVHVGHWTVVSKECDSVAAALAQERIN-AISYHAGLA 119 (184)
Q Consensus 84 ~~~vlVaT~tr~~~e~~a~gL~~~gi~-~~vih~~~p 119 (184)
...|+++|.+-..+..+|..|...|.+ +.++.+|++
T Consensus 65 ~~~vv~~c~~g~~s~~~a~~L~~~G~~~v~~l~GG~~ 101 (105)
T cd01525 65 GKIIVIVSHSHKHAALFAAFLVKCGVPRVCILDGGIN 101 (105)
T ss_pred CCeEEEEeCCCccHHHHHHHHHHcCCCCEEEEeCcHH
Confidence 446888887766777888889888986 567888864
No 472
>PRK03767 NAD(P)H:quinone oxidoreductase; Provisional
Probab=48.33 E-value=1.2e+02 Score=22.95 Aligned_cols=29 Identities=10% Similarity=0.113 Sum_probs=20.4
Q ss_pred EEEEe----ccHHHHHHHHHHHHh-CCCeeEEec
Q psy437 37 GIVYC----LTRKECDSVAAALAQ-ERINAISYH 65 (184)
Q Consensus 37 ~IIf~----~tr~~~e~la~~L~~-~gi~~~~~h 65 (184)
.|||. +|++.++.+++.+.+ .|..+..+.
T Consensus 5 lIvy~S~~G~T~~lA~~ia~g~~~~~G~ev~~~~ 38 (200)
T PRK03767 5 LVLYYSMYGHIETMAEAVAEGAREVAGAEVTIKR 38 (200)
T ss_pred EEEEcCCCCHHHHHHHHHHHHHhhcCCcEEEEEe
Confidence 45554 477778888888877 787776654
No 473
>PRK05728 DNA polymerase III subunit chi; Validated
Probab=48.22 E-value=66 Score=23.11 Aligned_cols=39 Identities=15% Similarity=0.212 Sum_probs=29.5
Q ss_pred ccChHHHHHHHHHhhc-CCCcEEEEeccHHHHHHHHHHHH
Q psy437 17 KKNVLKEVISLIKAKY-SGQSGIVYCLTRKECDSVAAALA 55 (184)
Q Consensus 17 ~~~k~~~L~~~l~~~~-~~~~~IIf~~tr~~~e~la~~L~ 55 (184)
...+...+..++.+.. .+.+++|+|.+.+.++.+-+.|=
T Consensus 11 ~~~~~~~~c~L~~ka~~~g~rv~I~~~d~~~a~~lD~~LW 50 (142)
T PRK05728 11 LSALEALLCELAEKALRAGWRVLVQCEDEEQAEALDEALW 50 (142)
T ss_pred chhHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHhc
Confidence 3346777777776542 57789999999999999888884
No 474
>PLN02522 ATP citrate (pro-S)-lyase
Probab=47.90 E-value=1.2e+02 Score=27.67 Aligned_cols=67 Identities=18% Similarity=0.099 Sum_probs=46.9
Q ss_pred hHHHHHHHHHhhcCCCcEEEEeccHHHHHHHHHHHHhCCCee-EEecCCCCHHHHHHHHHHHhccCce
Q psy437 20 VLKEVISLIKAKYSGQSGIVYCLTRKECDSVAAALAQERINA-ISYHAGLADKLRNEVQMKWISNKVH 86 (184)
Q Consensus 20 k~~~L~~~l~~~~~~~~~IIf~~tr~~~e~la~~L~~~gi~~-~~~hg~l~~~~R~~~~~~f~~g~~~ 86 (184)
.++.+.+.+.+...-.-.|||++.+...+.+.+.+...|++. ..+.+|.+.....++.+.-+...++
T Consensus 65 Vf~tv~eA~~~~~~~~~~vifvp~~~a~da~lEa~~a~GIk~~VIiteGfpe~d~~~l~~~Ar~~g~r 132 (608)
T PLN02522 65 VHGSIEAACKAHPTADVFINFASFRSAAASSMEALKQPTIRVVAIIAEGVPESDTKQLIAYARANNKV 132 (608)
T ss_pred ccchHHHHHHhCCCCcEEEEeCChHHhHHHHHHHHhhCCCCEEEEECCCCChhhHHHHHHHHHHcCCE
Confidence 345555556443133557899999999999999999889984 5567788876656666666655544
No 475
>PRK00033 clpS ATP-dependent Clp protease adaptor protein ClpS; Reviewed
Probab=47.89 E-value=86 Score=21.27 Aligned_cols=31 Identities=13% Similarity=0.117 Sum_probs=23.9
Q ss_pred cCCCcEEEEeccHHHHHHHHHHHHhCCCeeE
Q psy437 32 YSGQSGIVYCLTRKECDSVAAALAQERINAI 62 (184)
Q Consensus 32 ~~~~~~IIf~~tr~~~e~la~~L~~~gi~~~ 62 (184)
+..+++++..-+++.|+..+..|...|+.+.
T Consensus 66 H~~G~avv~~~~~e~AE~~~~~l~~~~L~~~ 96 (100)
T PRK00033 66 HNEGKAVVGVCTREVAETKVEQVHQHGLLCT 96 (100)
T ss_pred hcCCcEEEEEEcHHHHHHHHHHHHcCCCeEE
Confidence 4667888888888888888888877776653
No 476
>PRK07411 hypothetical protein; Validated
Probab=47.62 E-value=34 Score=29.05 Aligned_cols=38 Identities=16% Similarity=0.276 Sum_probs=31.8
Q ss_pred CCCcEEEEeccHHHHHHHHHHHHhCCCeeEEecCCCCH
Q psy437 33 SGQSGIVYCLTRKECDSVAAALAQERINAISYHAGLAD 70 (184)
Q Consensus 33 ~~~~~IIf~~tr~~~e~la~~L~~~gi~~~~~hg~l~~ 70 (184)
+..+.++||.+-..+...+..|++.|++...+.||+..
T Consensus 341 ~d~~IVvyC~~G~RS~~aa~~L~~~G~~~~~l~GG~~~ 378 (390)
T PRK07411 341 NGHRLIAHCKMGGRSAKALGILKEAGIEGTNVKGGITA 378 (390)
T ss_pred CCCeEEEECCCCHHHHHHHHHHHHcCCCeEEecchHHH
Confidence 45678889999889999999999999987778888654
No 477
>PF13407 Peripla_BP_4: Periplasmic binding protein domain; PDB: 3BRS_B 3GBP_A 3GA5_A 1GCG_A 1GCA_A 3H75_A 3D02_A 3L49_B 3EJW_B 3T95_A ....
Probab=46.77 E-value=1.3e+02 Score=22.95 Aligned_cols=67 Identities=13% Similarity=-0.020 Sum_probs=49.0
Q ss_pred HHHHHhCCCeeEE-ecCCCCHHHHHHHHHHHhccCceEEEEEeecc-cHHHHHHHHHhcCCcEEEeeCC
Q psy437 51 AAALAQERINAIS-YHAGLADKLRNEVQMKWISNKVHVGHWTVVSK-ECDSVAAALAQERINAISYHAG 117 (184)
Q Consensus 51 a~~L~~~gi~~~~-~hg~l~~~~R~~~~~~f~~g~~~vlVaT~tr~-~~e~~a~gL~~~gi~~~vih~~ 117 (184)
.+.+.+.|+.... +.+..+.+.....++.+.+.+...||.++... ........+...||++..++-+
T Consensus 21 ~~~a~~~g~~~~~~~~~~~d~~~q~~~i~~~i~~~~d~Iiv~~~~~~~~~~~l~~~~~~gIpvv~~d~~ 89 (257)
T PF13407_consen 21 KAAAKELGYEVEIVFDAQNDPEEQIEQIEQAISQGVDGIIVSPVDPDSLAPFLEKAKAAGIPVVTVDSD 89 (257)
T ss_dssp HHHHHHHTCEEEEEEESTTTHHHHHHHHHHHHHTTESEEEEESSSTTTTHHHHHHHHHTTSEEEEESST
T ss_pred HHHHHHcCCEEEEeCCCCCCHHHHHHHHHHHHHhcCCEEEecCCCHHHHHHHHHHHhhcCceEEEEecc
Confidence 3444455888777 58888888888899999988888777776553 3445556678889986666666
No 478
>PRK05752 uroporphyrinogen-III synthase; Validated
Probab=46.74 E-value=1.4e+02 Score=23.37 Aligned_cols=54 Identities=13% Similarity=0.028 Sum_probs=35.9
Q ss_pred eEEEEEeecccHHHHHHHHHhcCCcE---EEeeCCCChHHHHHHHHHhhCCCceEEEE
Q psy437 86 HVGHWTVVSKECDSVAAALAQERINA---ISYHAGLADKLRNEVQMKWISNKVHLYNV 140 (184)
Q Consensus 86 ~vlVaT~tr~~~e~~a~gL~~~gi~~---~vih~~~p~~~r~~~~~~f~~~~~~v~va 140 (184)
+||+ +.+.+.-+.++.+|...|+.+ .+|.--.|......+.+.+..+.+..++.
T Consensus 132 ~vLi-~rg~~~r~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~~~~~~~d~v~f 188 (255)
T PRK05752 132 RVLI-MRGEGGRELLAERLREQGASVDYLELYRRCLPDYPAGTLLQRVEAERLNGLVV 188 (255)
T ss_pred EEEE-EccCccHHHHHHHHHHCCCEEeEEEEEeecCCCCCHHHHHHHHHhCCCCEEEE
Confidence 4555 344455668899999999774 55664455555556666777777777766
No 479
>PRK10329 glutaredoxin-like protein; Provisional
Probab=46.68 E-value=76 Score=20.27 Aligned_cols=53 Identities=6% Similarity=0.068 Sum_probs=38.7
Q ss_pred EEEEE-eecccHHHHHHHHHhcCCcEEEeeCCCChHHHHHHHHHhhCCCceEEEE
Q psy437 87 VGHWT-VVSKECDSVAAALAQERINAISYHAGLADKLRNEVQMKWISNKVHLYNV 140 (184)
Q Consensus 87 vlVaT-~tr~~~e~~a~gL~~~gi~~~vih~~~p~~~r~~~~~~f~~~~~~v~va 140 (184)
|.+|| +.-..|..+-+.|+..||....++.+-......++... ....+++++.
T Consensus 3 v~lYt~~~Cp~C~~ak~~L~~~gI~~~~idi~~~~~~~~~~~~~-g~~~vPvv~i 56 (81)
T PRK10329 3 ITIYTRNDCVQCHATKRAMESRGFDFEMINVDRVPEAAETLRAQ-GFRQLPVVIA 56 (81)
T ss_pred EEEEeCCCCHhHHHHHHHHHHCCCceEEEECCCCHHHHHHHHHc-CCCCcCEEEE
Confidence 55565 45578889889999999997788888777776666553 4456777764
No 480
>cd01539 PBP1_GGBP Periplasmic glucose/galactose-binding protein (GGBP) involved in chemotaxis towards, and active transport of, glucose and galactose in various bacterial species. Periplasmic glucose/galactose-binding protein (GGBP) involved in chemotaxis towards, and active transport of, glucose and galactose in various bacterial species. GGBP is a member of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. Moreover, the periplasmic GGBP is homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR.
Probab=46.49 E-value=1.5e+02 Score=23.58 Aligned_cols=67 Identities=15% Similarity=0.151 Sum_probs=39.8
Q ss_pred HHHHHHh--CCCeeEEecCCCCHHHHHHHHHHHhccCceEEEEEeeccc-HHHHHHHHHhcCCcEEEeeC
Q psy437 50 VAAALAQ--ERINAISYHAGLADKLRNEVQMKWISNKVHVGHWTVVSKE-CDSVAAALAQERINAISYHA 116 (184)
Q Consensus 50 la~~L~~--~gi~~~~~hg~l~~~~R~~~~~~f~~g~~~vlVaT~tr~~-~e~~a~gL~~~gi~~~vih~ 116 (184)
+.+.+.. .|+.+..+.++-+.+.....++.+....+..+|.+++-.. .......+...|++++.++.
T Consensus 21 i~~~a~~~~~g~~~~~~~~~~~~~~q~~~i~~l~~~~vdgiii~~~~~~~~~~~~~~~~~~giPvV~~~~ 90 (303)
T cd01539 21 LEDIQKENGGKVEFTFYDAKNNQSTQNEQIDTALAKGVDLLAVNLVDPTAAQTVINKAKQKNIPVIFFNR 90 (303)
T ss_pred HHHHHHhhCCCeeEEEecCCCCHHHHHHHHHHHHHcCCCEEEEecCchhhHHHHHHHHHHCCCCEEEeCC
Confidence 3444444 5777777666656665667777777777776655543322 23344556667888555554
No 481
>COG0426 FpaA Uncharacterized flavoproteins [Energy production and conversion]
Probab=46.25 E-value=1.9e+02 Score=24.74 Aligned_cols=70 Identities=16% Similarity=0.150 Sum_probs=44.2
Q ss_pred CCe-eEEecCCCCHH---HHHHHHHHHhccCc--eE-EEEEe----ecccHHHHHHHHHhcCCcEEEeeCCCChHHHHHH
Q psy437 58 RIN-AISYHAGLADK---LRNEVQMKWISNKV--HV-GHWTV----VSKECDSVAAALAQERINAISYHAGLADKLRNEV 126 (184)
Q Consensus 58 gi~-~~~~hg~l~~~---~R~~~~~~f~~g~~--~v-lVaT~----tr~~~e~~a~gL~~~gi~~~vih~~~p~~~r~~~ 126 (184)
.+. .+.=||-.-.. +-.....+|.+++. .| |++.+ |..++..+|+||.+.|+.+.+++.... ..+++
T Consensus 214 ~i~~IaP~HG~i~~~~~~~i~~~Y~~W~~~~~~~~V~l~Y~smyg~T~~ma~aiaegl~~~gv~v~~~~~~~~--~~~eI 291 (388)
T COG0426 214 KIEMIAPSHGPIWRGNPKEIVEAYRDWAEGQPKGKVDLIYDSMYGNTEKMAQAIAEGLMKEGVDVEVINLEDA--DPSEI 291 (388)
T ss_pred CccEEEcCCCceeeCCHHHHHHHHHHHHccCCcceEEEEEecccCCHHHHHHHHHHHhhhcCCceEEEEcccC--CHHHH
Confidence 444 44568876554 44455666666652 24 44443 446788889999999999777776654 45555
Q ss_pred HHH
Q psy437 127 QMK 129 (184)
Q Consensus 127 ~~~ 129 (184)
++.
T Consensus 292 ~~~ 294 (388)
T COG0426 292 VEE 294 (388)
T ss_pred HHH
Confidence 554
No 482
>PRK10638 glutaredoxin 3; Provisional
Probab=46.22 E-value=75 Score=20.07 Aligned_cols=53 Identities=15% Similarity=0.038 Sum_probs=34.5
Q ss_pred cEEEEe-ccHHHHHHHHHHHHhCCCeeEEecCCCCHHHHHHHHHHHhccCceEE
Q psy437 36 SGIVYC-LTRKECDSVAAALAQERINAISYHAGLADKLRNEVQMKWISNKVHVG 88 (184)
Q Consensus 36 ~~IIf~-~tr~~~e~la~~L~~~gi~~~~~hg~l~~~~R~~~~~~f~~g~~~vl 88 (184)
+..+|. +++..|..+...|.+.|++...+.=..+.+.+....+..-.+.+++|
T Consensus 3 ~v~ly~~~~Cp~C~~a~~~L~~~gi~y~~~dv~~~~~~~~~l~~~~g~~~vP~i 56 (83)
T PRK10638 3 NVEIYTKATCPFCHRAKALLNSKGVSFQEIPIDGDAAKREEMIKRSGRTTVPQI 56 (83)
T ss_pred cEEEEECCCChhHHHHHHHHHHcCCCcEEEECCCCHHHHHHHHHHhCCCCcCEE
Confidence 345665 67788999999999999887666554444445444433333456655
No 483
>PRK00142 putative rhodanese-related sulfurtransferase; Provisional
Probab=45.88 E-value=26 Score=28.87 Aligned_cols=38 Identities=16% Similarity=0.429 Sum_probs=32.2
Q ss_pred CCCcEEEEeccHHHHHHHHHHHHhCCCe-eEEecCCCCH
Q psy437 33 SGQSGIVYCLTRKECDSVAAALAQERIN-AISYHAGLAD 70 (184)
Q Consensus 33 ~~~~~IIf~~tr~~~e~la~~L~~~gi~-~~~~hg~l~~ 70 (184)
+..+.++||.+-..++..+.+|...|++ +..+.||+..
T Consensus 170 kdk~IvvyC~~G~Rs~~aa~~L~~~Gf~~V~~L~GGi~~ 208 (314)
T PRK00142 170 KDKKVVMYCTGGIRCEKASAWMKHEGFKEVYQLEGGIIT 208 (314)
T ss_pred CcCeEEEECCCCcHHHHHHHHHHHcCCCcEEEecchHHH
Confidence 4567889999988889999999999996 7789999764
No 484
>PF09015 NgoMIV_restric: NgoMIV restriction enzyme; InterPro: IPR015105 There are four classes of restriction endonucleases: types I, II,III and IV. All types of enzymes recognise specific short DNA sequences and carry out the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates. They differ in their recognition sequence, subunit composition, cleavage position, and cofactor requirements [, ], as summarised below: Type I enzymes (3.1.21.3 from EC) cleave at sites remote from recognition site; require both ATP and S-adenosyl-L-methionine to function; multifunctional protein with both restriction and methylase (2.1.1.72 from EC) activities. Type II enzymes (3.1.21.4 from EC) cleave within or at short specific distances from recognition site; most require magnesium; single function (restriction) enzymes independent of methylase. Type III enzymes (3.1.21.5 from EC) cleave at sites a short distance from recognition site; require ATP (but doesn't hydrolyse it); S-adenosyl-L-methionine stimulates reaction but is not required; exists as part of a complex with a modification methylase methylase (2.1.1.72 from EC). Type IV enzymes target methylated DNA. Type II restriction endonucleases (3.1.21.4 from EC) are components of prokaryotic DNA restriction-modification mechanisms that protect the organism against invading foreign DNA. These site-specific deoxyribonucleases catalyse the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates. Of the 3000 restriction endonucleases that have been characterised, most are homodimeric or tetrameric enzymes that cleave target DNA at sequence-specific sites close to the recognition site. For homodimeric enzymes, the recognition site is usually a palindromic sequence 4-8 bp in length. Most enzymes require magnesium ions as a cofactor for catalysis. Although they can vary in their mode of recognition, many restriction endonucleases share a similar structural core comprising four beta-strands and one alpha-helix, as well as a similar mechanism of cleavage, suggesting a common ancestral origin []. However, there is still considerable diversity amongst restriction endonucleases [, ]. The target site recognition process triggers large conformational changes of the enzyme and the target DNA, leading to the activation of the catalytic centres. Like other DNA binding proteins, restriction enzymes are capable of non-specific DNA binding as well, which is the prerequisite for efficient target site location by facilitated diffusion. Non-specific binding usually does not involve interactions with the bases but only with the DNA backbone []. This entry represents NgoMIV-type prokaryotic DNA restriction enzymes exhibiting an alpha/beta structure, with a central region comprising a mixed six-stranded beta-sheet with alpha-helices on each side. A long 'arm' protrudes out of the core of the domain between strands beta2 and beta3 and is mainly involved in the tetramerisation interface of the protein. These restriction enzymes recognise the double-stranded sequence GCCGGC and cleave after G-1 []. ; PDB: 1FIU_C 4ABT_B.
Probab=45.87 E-value=37 Score=27.26 Aligned_cols=56 Identities=18% Similarity=0.132 Sum_probs=33.6
Q ss_pred CCCCHHHHHHHHHHHh--ccCceEEEEEeecccHHHHHH-HHHhcCCcEEEeeCCCChHH
Q psy437 66 AGLADKLRNEVQMKWI--SNKVHVGHWTVVSKECDSVAA-ALAQERINAISYHAGLADKL 122 (184)
Q Consensus 66 g~l~~~~R~~~~~~f~--~g~~~vlVaT~tr~~~e~~a~-gL~~~gi~~~vih~~~p~~~ 122 (184)
++..|..|.+.+...+ +|..+=||+..+--...++|. .|.--+|+ +|||+.+|.-.
T Consensus 184 sdraqn~r~e~lnlir~rkg~~phiv~vt~ep~psrlas~a~gtgdid-~vyh~al~el~ 242 (278)
T PF09015_consen 184 SDRAQNARSEALNLIRNRKGRLPHIVAVTAEPLPSRLASLALGTGDID-CVYHFALPELI 242 (278)
T ss_dssp TTGGGHHHHHHHHHHHH-SSS--EEEEEE----HHHHHHHHSSSSS-S-EEEETTHHHHH
T ss_pred chhhhhhHHHHHHHHHhccCCCCeEEEEeCCCChHHHHHHHcCCCccc-eeeeecHHHHH
Confidence 4455788888877765 477776666654444444443 44566899 99999998643
No 485
>COG3457 Predicted amino acid racemase [Amino acid transport and metabolism]
Probab=45.69 E-value=31 Score=28.63 Aligned_cols=109 Identities=15% Similarity=0.011 Sum_probs=62.7
Q ss_pred HHHHHHHHHhCCCeeEEecCCCCHHHHHHHHHHHhccCceE---EEEEeecccHHHHHHHHHhcCCcEEEeeCCCChHHH
Q psy437 47 CDSVAAALAQERINAISYHAGLADKLRNEVQMKWISNKVHV---GHWTVVSKECDSVAAALAQERINAISYHAGLADKLR 123 (184)
Q Consensus 47 ~e~la~~L~~~gi~~~~~hg~l~~~~R~~~~~~f~~g~~~v---lVaT~tr~~~e~~a~gL~~~gi~~~vih~~~p~~~r 123 (184)
+-++++.|...|+...+ +.|.....+.+...+++ |+=+|.+.+.+.+-+++| +. .+.-.+.-....
T Consensus 41 ~~~iae~l~~~Gi~~ia-------esr~~n~~~lr~~g~~~~~~Llr~P~~sei~~vv~~~D---vs-~~sel~~arqls 109 (353)
T COG3457 41 DPFIAEALLALGIEGIA-------ESRIDNAIRLREAGCTIPGHLLRSPCMSEIEDVVRKVD---VS-TVSELDTARQLS 109 (353)
T ss_pred ChHHHHHHHhcCcceee-------ehhHHHHHHHHHcCCCcCceEeecccHHHHHHHHHhcC---eE-EEecHHHHHHHH
Confidence 45677788887876432 34666666666655544 777787777777766665 44 444444444444
Q ss_pred HHHHHHhhCCCceEEEEEecCCccEEEecCCCCCccccccccccc
Q psy437 124 NEVQMKWISNKVHLYNVWKIQWKRIIWIHSLVLIKPDYLPPILDL 168 (184)
Q Consensus 124 ~~~~~~f~~~~~~v~va~D~~~vr~v~~~~~p~~~e~y~~~i~~~ 168 (184)
.-..+..+.-++.++| |..|+|-=+-.-+....+.++++|..+
T Consensus 110 e~A~~~Gk~h~VlLmV--d~~DlreG~~~~~~~~l~~~V~eI~~l 152 (353)
T COG3457 110 EAAVRMGKVHDVLLMV--DYGDLREGQWGFLIEDLEETVEEIQQL 152 (353)
T ss_pred HHHHHhCcceeEEEEE--EcccccCcchhhHHHHHHHHHHHHhcC
Confidence 4444445444444444 666554332223335566777777544
No 486
>KOG1002|consensus
Probab=45.55 E-value=39 Score=30.04 Aligned_cols=84 Identities=7% Similarity=0.089 Sum_probs=63.4
Q ss_pred CceEEEEEeecccHHHHHHHHHhcCCcEEEeeCCCChHHHHHHHHHhhCC-CceEEEE--------EecCCccEEEecCC
Q psy437 84 KVHVGHWTVVSKECDSVAAALAQERINAISYHAGLADKLRNEVQMKWISN-KVHLYNV--------WKIQWKRIIWIHSL 154 (184)
Q Consensus 84 ~~~vlVaT~tr~~~e~~a~gL~~~gi~~~vih~~~p~~~r~~~~~~f~~~-~~~v~va--------~D~~~vr~v~~~~~ 154 (184)
..+-||++---.+.+.+.-.|.+.|++|+-+-|+|....|+.....|+++ .++|+.. ++.-.-++|+-+|+
T Consensus 638 t~KsIVFSQFTSmLDLi~~rL~kaGfscVkL~GsMs~~ardatik~F~nd~~c~vfLvSLkAGGVALNLteASqVFmmDP 717 (791)
T KOG1002|consen 638 TAKSIVFSQFTSMLDLIEWRLGKAGFSCVKLVGSMSPAARDATIKYFKNDIDCRVFLVSLKAGGVALNLTEASQVFMMDP 717 (791)
T ss_pred chhhhhHHHHHHHHHHHHHHhhccCceEEEeccCCChHHHHHHHHHhccCCCeEEEEEEeccCceEeeechhceeEeecc
Confidence 34557766655678888888999999988899999999999999999975 4555443 47777788888876
Q ss_pred CCC------cccccccccc
Q psy437 155 VLI------KPDYLPPILD 167 (184)
Q Consensus 155 p~~------~e~y~~~i~~ 167 (184)
=.. +.+-+|||+-
T Consensus 718 WWNpaVe~Qa~DRiHRIGQ 736 (791)
T KOG1002|consen 718 WWNPAVEWQAQDRIHRIGQ 736 (791)
T ss_pred cccHHHHhhhhhhHHhhcC
Confidence 544 4456666654
No 487
>COG1058 CinA Predicted nucleotide-utilizing enzyme related to molybdopterin-biosynthesis enzyme MoeA [General function prediction only]
Probab=45.46 E-value=94 Score=24.90 Aligned_cols=65 Identities=15% Similarity=0.000 Sum_probs=39.5
Q ss_pred HHHHHHHHHHhCCCeeEEecCCCCHHHHH-HHHHHHhccCceEEEEEeecc------cHHHHHHHHHhcCCcEEEee
Q psy437 46 ECDSVAAALAQERINAISYHAGLADKLRN-EVQMKWISNKVHVGHWTVVSK------ECDSVAAALAQERINAISYH 115 (184)
Q Consensus 46 ~~e~la~~L~~~gi~~~~~hg~l~~~~R~-~~~~~f~~g~~~vlVaT~tr~------~~e~~a~gL~~~gi~~~vih 115 (184)
.+.++++.|.+.|+.+...--=.+..++. ..+....+ ..+++|.|-.-+ .++.+|+.| |.. +++|
T Consensus 22 Na~~la~~L~~~G~~v~~~~~VgD~~~~I~~~l~~a~~-r~D~vI~tGGLGPT~DDiT~e~vAka~---g~~-lv~~ 93 (255)
T COG1058 22 NAAFLADELTELGVDLARITTVGDNPDRIVEALREASE-RADVVITTGGLGPTHDDLTAEAVAKAL---GRP-LVLD 93 (255)
T ss_pred hHHHHHHHHHhcCceEEEEEecCCCHHHHHHHHHHHHh-CCCEEEECCCcCCCccHhHHHHHHHHh---CCC-cccC
Confidence 46889999999999876543333333333 33333334 489999997664 344455544 444 6666
No 488
>PF13458 Peripla_BP_6: Periplasmic binding protein; PDB: 4EVS_A 4EY3_A 4EYG_B 4EYK_A 3H5L_B 3TD9_A 3EAF_A 1Z18_A 1Z17_A 2LIV_A ....
Probab=45.19 E-value=1.6e+02 Score=23.53 Aligned_cols=90 Identities=12% Similarity=0.020 Sum_probs=57.8
Q ss_pred hHHHHHHHHHhhcC-CCcEEEEeccH---HHHHHHHHHHHhCCCeeE--EecCCCCHHHHHHHHHHHhccCceEEEEEee
Q psy437 20 VLKEVISLIKAKYS-GQSGIVYCLTR---KECDSVAAALAQERINAI--SYHAGLADKLRNEVQMKWISNKVHVGHWTVV 93 (184)
Q Consensus 20 k~~~L~~~l~~~~~-~~~~IIf~~tr---~~~e~la~~L~~~gi~~~--~~hg~l~~~~R~~~~~~f~~g~~~vlVaT~t 93 (184)
-...+.+.+.+... ..-+||+.++. ..++.+...+.+.|+++. ..+. .+..+=...++++++...++|+....
T Consensus 121 ~~~~~~~~~~~~~g~~~v~iv~~~~~~g~~~~~~~~~~~~~~G~~vv~~~~~~-~~~~d~~~~~~~l~~~~~d~v~~~~~ 199 (343)
T PF13458_consen 121 QAAALAEYLAKKLGAKKVAIVYPDDPYGRSLAEAFRKALEAAGGKVVGEIRYP-PGDTDFSALVQQLKSAGPDVVVLAGD 199 (343)
T ss_dssp HHHHHHHHHHHTTTTSEEEEEEESSHHHHHHHHHHHHHHHHTTCEEEEEEEE--TTSSHHHHHHHHHHHTTTSEEEEEST
T ss_pred HHHHHHHHHHHHcCCcEEEEEecCchhhhHHHHHHHHHHhhcCceeccceecc-cccccchHHHHHHhhcCCCEEEEecc
Confidence 45666676644323 23356666553 345566777778888853 2222 22345556778888878888888888
Q ss_pred cccHHHHHHHHHhcCCc
Q psy437 94 SKECDSVAAALAQERIN 110 (184)
Q Consensus 94 r~~~e~~a~gL~~~gi~ 110 (184)
-.++..+.+.+...|..
T Consensus 200 ~~~~~~~~~~~~~~~~~ 216 (343)
T PF13458_consen 200 PADAAAFLRQLRQLGLK 216 (343)
T ss_dssp HHHHHHHHHHHHHTTGC
T ss_pred chhHHHHHHHHHhhccc
Confidence 88888888888877776
No 489
>TIGR00596 rad1 DNA repair protein (rad1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford Universit
Probab=45.14 E-value=33 Score=32.15 Aligned_cols=38 Identities=11% Similarity=0.224 Sum_probs=28.6
Q ss_pred ChHHHHHHHHHhh----------cCCCcEEEEeccHHHHHHHHHHHHh
Q psy437 19 NVLKEVISLIKAK----------YSGQSGIVYCLTRKECDSVAAALAQ 56 (184)
Q Consensus 19 ~k~~~L~~~l~~~----------~~~~~~IIf~~tr~~~e~la~~L~~ 56 (184)
-|...|.++|.+. .++++.||||+.+.+|.+|.+.|..
T Consensus 270 PKw~~L~eiL~eI~~~~~~~~~~~~~~~iLI~~~d~~T~~qL~~~L~~ 317 (814)
T TIGR00596 270 PKWEVLTDVLKEISHEMRMTNRLQGPGKVLIMCSDNRTCLQLRDYLTT 317 (814)
T ss_pred CCHHHHHHHHHHHHhHHhhhcccCCCCcEEEEEcchHHHHHHHHHHHh
Confidence 3677776666431 1345699999999999999999965
No 490
>KOG0390|consensus
Probab=45.07 E-value=1.1e+02 Score=28.70 Aligned_cols=70 Identities=6% Similarity=-0.032 Sum_probs=54.5
Q ss_pred HHHHhcCCcEEEeeCCCChHHHHHHHHHhhCCCc--eEEEE--------EecCCccEEEecCCCCCccccccccccc-cC
Q psy437 102 AALAQERINAISYHAGLADKLRNEVQMKWISNKV--HLYNV--------WKIQWKRIIWIHSLVLIKPDYLPPILDL-RL 170 (184)
Q Consensus 102 ~gL~~~gi~~~vih~~~p~~~r~~~~~~f~~~~~--~v~va--------~D~~~vr~v~~~~~p~~~e~y~~~i~~~-~~ 170 (184)
....-.|..++.++|.+|...|+.+-+.|-+-.- .|+.+ +.--.-+.||.+|....+-.-.|-+.|. |-
T Consensus 613 ~~~~~~g~~~~rLdG~~~~~qRq~~vd~FN~p~~~~~vfLlSsKAgg~GinLiGAsRlil~D~dWNPa~d~QAmaR~~Rd 692 (776)
T KOG0390|consen 613 QLCRWRGYEVLRLDGKTSIKQRQKLVDTFNDPESPSFVFLLSSKAGGEGLNLIGASRLILFDPDWNPAVDQQAMARAWRD 692 (776)
T ss_pred HHHhhcCceEEEEcCCCchHHHHHHHHhccCCCCCceEEEEecccccCceeecccceEEEeCCCCCchhHHHHHHHhccC
Confidence 3335569999999999999999999999965332 44444 4777778899999999999999998653 55
Q ss_pred C
Q psy437 171 G 171 (184)
Q Consensus 171 ~ 171 (184)
|
T Consensus 693 G 693 (776)
T KOG0390|consen 693 G 693 (776)
T ss_pred C
Confidence 4
No 491
>PF02617 ClpS: ATP-dependent Clp protease adaptor protein ClpS; InterPro: IPR003769 In the bacterial cytosol, ATP-dependent protein degradation is performed by several different chaperone-protease pairs, including ClpAP. ClpS directly influences the ClpAP machine by binding to the N-terminal domain of the chaperone ClpA. The degradation of ClpAP substrates, both SsrA-tagged proteins and ClpA itself, is specifically inhibited by ClpS. ClpS modifies ClpA substrate specificity, potentially redirecting degradation by ClpAP toward aggregated proteins []. ClpS is a small alpha/beta protein that consists of three alpha-helices connected to three antiparallel beta-strands []. The protein has a globular shape, with a curved layer of three antiparallel alpha-helices over a twisted antiparallel beta-sheet. Dimerization of ClpS may occur through its N-terminal domain. This short extended N-terminal region in ClpS is followed by the central seven-residue beta-strand, which is flanked by two other beta-strands in a small beta-sheet. ; GO: 0030163 protein catabolic process; PDB: 3O2O_B 1MBU_D 3O2B_C 2WA9_D 3O1F_A 2W9R_A 1MG9_A 1MBX_C 2WA8_C 1R6O_D ....
Probab=44.97 E-value=82 Score=20.16 Aligned_cols=22 Identities=18% Similarity=0.036 Sum_probs=16.6
Q ss_pred EEEEEeecccHHHHHHHHHhcC
Q psy437 87 VGHWTVVSKECDSVAAALAQER 108 (184)
Q Consensus 87 vlVaT~tr~~~e~~a~gL~~~g 108 (184)
.+|.+-++..|+..+..|...|
T Consensus 50 avv~~~~~e~ae~~~~~l~~~g 71 (82)
T PF02617_consen 50 AVVGTGSREEAEEYAEKLQRAG 71 (82)
T ss_dssp EEEEEEEHHHHHHHHHHHHHHH
T ss_pred EeeeeCCHHHHHHHHHHHHHHh
Confidence 5667777888888888887666
No 492
>cd06271 PBP1_AglR_RafR_like Ligand-binding domain of DNA transcription repressors specific for raffinose (RafR) and alpha-glucosides (AglR) which are members of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressors specific for raffinose (RafR) and alpha-glucosides (AglR) which are members of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the represso
Probab=44.51 E-value=1.4e+02 Score=22.71 Aligned_cols=20 Identities=5% Similarity=-0.218 Sum_probs=12.2
Q ss_pred EeecccHHHHHHHHHhcCCc
Q psy437 91 TVVSKECDSVAAALAQERIN 110 (184)
Q Consensus 91 T~tr~~~e~~a~gL~~~gi~ 110 (184)
++.......++..|-..|.+
T Consensus 102 ~d~~~~~~~a~~~l~~~g~~ 121 (268)
T cd06271 102 FDNEAAAYQAVRRLIALGHR 121 (268)
T ss_pred eCcHHHHHHHHHHHHHcCCC
Confidence 33334556777777666755
No 493
>cd06316 PBP1_ABC_sugar_binding_like_7 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=44.41 E-value=1.5e+02 Score=23.17 Aligned_cols=68 Identities=13% Similarity=0.029 Sum_probs=34.5
Q ss_pred HHHHHHHhCCCeeEEe-cCCCCHHHHHHHHHHHhccCceEEEEEeeccc-HHHHHHHHHhcCCcEEEeeC
Q psy437 49 SVAAALAQERINAISY-HAGLADKLRNEVQMKWISNKVHVGHWTVVSKE-CDSVAAALAQERINAISYHA 116 (184)
Q Consensus 49 ~la~~L~~~gi~~~~~-hg~l~~~~R~~~~~~f~~g~~~vlVaT~tr~~-~e~~a~gL~~~gi~~~vih~ 116 (184)
.+.+.+.+.|+.+..+ .++-+.+...+.++.+....+..+|-.++... .+.....+...|+++..++.
T Consensus 20 gi~~~a~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~dgiii~~~~~~~~~~~i~~~~~~~iPvV~~~~ 89 (294)
T cd06316 20 GAKDEFAKLGIEVVATTDAQFDPAKQVADIETTISQKPDIIISIPVDPVSTAAAYKKVAEAGIKLVFMDN 89 (294)
T ss_pred HHHHHHHHcCCEEEEecCCCCCHHHHHHHHHHHHHhCCCEEEEcCCCchhhhHHHHHHHHcCCcEEEecC
Confidence 3445555667776532 34444544455565655555654444332221 23334556667777444444
No 494
>PF02603 Hpr_kinase_N: HPr Serine kinase N terminus; InterPro: IPR011126 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents the N-terminal region of Hpr Serine/threonine kinase PtsK. This kinase is the sensor in a multicomponent phosphorelay system in control of carbon catabolic repression in bacteria []. This kinase in unusual in that it recognises the tertiary structure of its target and is a member of a novel family unrelated to any previously described protein phosphorylating enzymes []. X-ray analysis of the full-length crystalline enzyme from Staphylococcus xylosus at a resolution of 1.95 A shows the enzyme to consist of two clearly separated domains that are assembled in a hexameric structure resembling a three-bladed propeller. The blades are formed by two N-terminal domains each, and the compact central hub assembles the C-terminal kinase domains []. ; GO: 0000155 two-component sensor activity, 0004672 protein kinase activity, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay), 0006109 regulation of carbohydrate metabolic process; PDB: 1KNX_B 1KO7_A.
Probab=44.19 E-value=31 Score=24.29 Aligned_cols=45 Identities=16% Similarity=-0.039 Sum_probs=29.4
Q ss_pred CCCCHHHHHHHHHHHhccCceEEEEEeecccHHHHHHHHHhcCCc
Q psy437 66 AGLADKLRNEVQMKWISNKVHVGHWTVVSKECDSVAAALAQERIN 110 (184)
Q Consensus 66 g~l~~~~R~~~~~~f~~g~~~vlVaT~tr~~~e~~a~gL~~~gi~ 110 (184)
..++.++|.+.++++.+.+.++||.|....-.+.+-..-+..++.
T Consensus 63 ~~l~~~~r~~~l~~l~~~~~P~iIvt~~~~~p~~l~e~a~~~~ip 107 (127)
T PF02603_consen 63 NSLDEEERKERLEKLFSYNPPCIIVTRGLEPPPELIELAEKYNIP 107 (127)
T ss_dssp CCS-HHHHCCHHHHHCTTT-S-EEEETTT---HHHHHHHHHCT--
T ss_pred HHCCHHHHHHHHHHHhCCCCCEEEEECcCCCCHHHHHHHHHhCCc
Confidence 458999999999999999999999999775444444444556665
No 495
>KOG0948|consensus
Probab=44.05 E-value=62 Score=30.31 Aligned_cols=53 Identities=17% Similarity=0.218 Sum_probs=40.0
Q ss_pred HHHHHHHHHhc-cCceEEEEEeecccHHHHHHHHHhcCCcEEEeeCCCChHHHHHHHHHhhC
Q psy437 72 LRNEVQMKWIS-NKVHVGHWTVVSKECDSVAAALAQERINAISYHAGLADKLRNEVQMKWIS 132 (184)
Q Consensus 72 ~R~~~~~~f~~-g~~~vlVaT~tr~~~e~~a~gL~~~gi~~~vih~~~p~~~r~~~~~~f~~ 132 (184)
.-.++...... .-.+|||++-++++||..|-.|.+-+.+ .++.+.-+...|-+
T Consensus 370 ~i~kiVkmi~~~~~~PVIvFSFSkkeCE~~Alqm~kldfN--------~deEk~~V~~iF~n 423 (1041)
T KOG0948|consen 370 DIYKIVKMIMERNYLPVIVFSFSKKECEAYALQMSKLDFN--------TDEEKELVETIFNN 423 (1041)
T ss_pred cHHHHHHHHHhhcCCceEEEEecHhHHHHHHHhhccCcCC--------ChhHHHHHHHHHHH
Confidence 33445555444 3348999999999999999999988887 67777778877754
No 496
>PF11181 YflT: Heat induced stress protein YflT
Probab=43.98 E-value=74 Score=21.34 Aligned_cols=28 Identities=14% Similarity=0.067 Sum_probs=21.2
Q ss_pred EEeeCCCChHHHHHHHHHhhCCCceEEE
Q psy437 112 ISYHAGLADKLRNEVQMKWISNKVHLYN 139 (184)
Q Consensus 112 ~vih~~~p~~~r~~~~~~f~~~~~~v~v 139 (184)
-....|+|...-.++.+.-..|++.|+|
T Consensus 76 ~l~~lGl~~~ea~~y~~~l~~Gkivl~V 103 (103)
T PF11181_consen 76 KLESLGLSEDEAERYEEELDQGKIVLVV 103 (103)
T ss_pred HHHHcCCCHHHHHHHHHHHHCCCEEEeC
Confidence 3455677888888888888888877765
No 497
>cd01019 ZnuA Zinc binding protein ZnuA. These proteins have been shown to function as initial receptors in the ABC uptake of Zn2+. They belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. They are comprised of two globular subdomains connected by a single helix and bind their specific ligands in the cleft between these domains. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=43.95 E-value=1.6e+02 Score=23.71 Aligned_cols=29 Identities=3% Similarity=-0.182 Sum_probs=19.5
Q ss_pred CCCCHHHHHHHHHHHhccCceEEEEEeec
Q psy437 66 AGLADKLRNEVQMKWISNKVHVGHWTVVS 94 (184)
Q Consensus 66 g~l~~~~R~~~~~~f~~g~~~vlVaT~tr 94 (184)
+.-++++-.++.+..++.++++|++-+..
T Consensus 210 ~eps~~~l~~l~~~ik~~~v~~If~e~~~ 238 (286)
T cd01019 210 IDPGAKRLAKIRKEIKEKGATCVFAEPQF 238 (286)
T ss_pred CCCCHHHHHHHHHHHHHcCCcEEEecCCC
Confidence 44555666667777777888877766544
No 498
>cd06302 PBP1_LsrB_Quorum_Sensing Periplasmic binding domain of autoinducer-2 (AI-2) receptor LsrB from Salmonella typhimurium and its close homologs. Periplasmic binding domain of autoinducer-2 (AI-2) receptor LsrB from Salmonella typhimurium and its close homologs from other bacteria. The members of this group are homologous to a family of periplasmic pentose/hexose sugar-binding proteins that function as the primary receptors for chemotaxis and transporters of many sugar based solutes in bacteria and archaea and that are a member of the type I periplasmic binding protein superfamily. LsrB binds a chemically distinct form of the AI-2 signal that lacks boron, in contrast to the Vibrio harveyi AI-2 signaling molecule that has an unusual furanosyl borate diester. Hence, many bacteria coordinate their gene expression according to the local density of their population by producing species specific AI-2. This process of quorum sensing allows LsrB to function as a periplasmic AI-2 binding p
Probab=43.62 E-value=1.6e+02 Score=23.23 Aligned_cols=68 Identities=10% Similarity=0.035 Sum_probs=37.5
Q ss_pred HHHHHHHhCCCeeEEe-cCCCCHHHHHHHHHHHhccCceEEEEEeecc-cHHHHHHHHHhcCCcEEEeeC
Q psy437 49 SVAAALAQERINAISY-HAGLADKLRNEVQMKWISNKVHVGHWTVVSK-ECDSVAAALAQERINAISYHA 116 (184)
Q Consensus 49 ~la~~L~~~gi~~~~~-hg~l~~~~R~~~~~~f~~g~~~vlVaT~tr~-~~e~~a~gL~~~gi~~~vih~ 116 (184)
.+.+.+.+.|+.+..+ .++.+++.....++.+.+.+...||.++... ..+.+.+.+...++++..++.
T Consensus 20 gi~~~a~~~g~~v~~~~~~~~d~~~~~~~i~~~~~~~~DgiIi~~~~~~~~~~~~~~~~~~~iPvV~v~~ 89 (298)
T cd06302 20 GAKEAAKELGVDAIYVGPTTADAAGQVQIIEDLIAQGVDAIAVVPNDPDALEPVLKKAREAGIKVVTHDS 89 (298)
T ss_pred HHHHHHHHhCCeEEEECCCCCCHHHHHHHHHHHHhcCCCEEEEecCCHHHHHHHHHHHHHCCCeEEEEcC
Confidence 3344444567776653 4555555556667777666666666554321 123444455667777444443
No 499
>KOG0626|consensus
Probab=43.14 E-value=97 Score=27.53 Aligned_cols=54 Identities=15% Similarity=0.148 Sum_probs=38.7
Q ss_pred HHHHHHhcCCc--EEEeeCCCChHHHHH--------HHHHh--------h--CCCceEEEEEecCCccEEEecC
Q psy437 100 VAAALAQERIN--AISYHAGLADKLRNE--------VQMKW--------I--SNKVHLYNVWKIQWKRIIWIHS 153 (184)
Q Consensus 100 ~a~gL~~~gi~--~~vih~~~p~~~r~~--------~~~~f--------~--~~~~~v~va~D~~~vr~v~~~~ 153 (184)
+...|-..||. +..+|+|+||.+++. +.++| + ++.|+.-+.|+.|++-.+.=|+
T Consensus 138 LI~eL~~nGI~P~VTLfHwDlPq~LeDeYgGwLn~~ivedF~~yA~~CF~~fGDrVK~WiT~NEP~v~s~~gY~ 211 (524)
T KOG0626|consen 138 LIDELLANGIEPFVTLFHWDLPQALEDEYGGWLNPEIVEDFRDYADLCFQEFGDRVKHWITFNEPNVFSIGGYD 211 (524)
T ss_pred HHHHHHHcCCeEEEEEecCCCCHHHHHHhccccCHHHHHHHHHHHHHHHHHhcccceeeEEecccceeeeehhc
Confidence 33455677777 466999999999873 44443 2 4678888888999877776654
No 500
>TIGR00683 nanA N-acetylneuraminate lyase. N-acetylneuraminate lyase is also known as N-acetylneuraminic acid aldolase, sialic acid aldolase, or sialate lyase. It is an intracellular enzyme. The structure of this homotetrameric enzyme related to dihydrodipicolinate synthase is known. In Clostridium tertium, the enzyme appears to be in an operon with a secreted sialidase that releases sialic acid from host sialoglycoconjugates. In several E. coli strains, however, this enzyme is responsible for N-acetyl-D-neuraminic acid synthesis for capsule production by condensing N-acetyl-D-mannosamine and pyruvate.
Probab=42.56 E-value=1.8e+02 Score=23.45 Aligned_cols=94 Identities=6% Similarity=-0.011 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhCC-CeeEEecC------CCCHHHHHHHHHHHhc---cCceEEEEEe--ecccHHHHHHHHHhcCCcEE
Q psy437 45 KECDSVAAALAQER-INAISYHA------GLADKLRNEVQMKWIS---NKVHVGHWTV--VSKECDSVAAALAQERINAI 112 (184)
Q Consensus 45 ~~~e~la~~L~~~g-i~~~~~hg------~l~~~~R~~~~~~f~~---g~~~vlVaT~--tr~~~e~~a~gL~~~gi~~~ 112 (184)
.....+.+++...| +...+.-| .|+.+||.++++.+.. |+++|++.+. +-.++-.+++.....|+++.
T Consensus 21 ~~~~~~i~~~i~~G~v~gi~~~GstGE~~~Lt~eEr~~~~~~~~~~~~~~~pvi~gv~~~~t~~~i~la~~a~~~Gad~v 100 (290)
T TIGR00683 21 KGLRQIIRHNIDKMKVDGLYVGGSTGENFMLSTEEKKEIFRIAKDEAKDQIALIAQVGSVNLKEAVELGKYATELGYDCL 100 (290)
T ss_pred HHHHHHHHHHHhCCCcCEEEECCcccccccCCHHHHHHHHHHHHHHhCCCCcEEEecCCCCHHHHHHHHHHHHHhCCCEE
Q ss_pred EeeCCCC-------hHHHHHHHHHhhCC-CceEEEE
Q psy437 113 SYHAGLA-------DKLRNEVQMKWISN-KVHLYNV 140 (184)
Q Consensus 113 vih~~~p-------~~~r~~~~~~f~~~-~~~v~va 140 (184)
++ -.| .....|..+....- ++++++.
T Consensus 101 ~v--~~P~y~~~~~~~i~~yf~~v~~~~~~lpv~lY 134 (290)
T TIGR00683 101 SA--VTPFYYKFSFPEIKHYYDTIIAETGGLNMIVY 134 (290)
T ss_pred EE--eCCcCCCCCHHHHHHHHHHHHhhCCCCCEEEE
Done!