Query psy437
Match_columns 184
No_of_seqs 258 out of 2103
Neff 8.7
Searched_HMMs 29240
Date Fri Aug 16 23:46:45 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy437.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/437hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2hjv_A ATP-dependent RNA helic 99.9 1.4E-21 4.8E-26 144.2 12.0 125 2-134 2-128 (163)
2 1oyw_A RECQ helicase, ATP-depe 99.9 9.7E-22 3.3E-26 169.4 12.5 125 2-134 205-329 (523)
3 2v1x_A ATP-dependent DNA helic 99.9 1.2E-21 4.2E-26 171.0 11.1 126 2-134 231-360 (591)
4 1t5i_A C_terminal domain of A 99.8 4.3E-21 1.5E-25 142.9 9.6 114 12-133 10-123 (172)
5 1fuk_A Eukaryotic initiation f 99.8 7.1E-20 2.4E-24 135.2 15.6 115 11-133 7-122 (165)
6 2jgn_A DBX, DDX3, ATP-dependen 99.8 2.2E-20 7.6E-25 140.6 12.1 122 6-134 16-139 (185)
7 2p6n_A ATP-dependent RNA helic 99.8 1.8E-20 6.2E-25 141.9 11.4 119 7-134 27-147 (191)
8 3eaq_A Heat resistant RNA depe 99.8 2.1E-20 7.1E-25 143.6 10.3 113 14-134 12-124 (212)
9 2rb4_A ATP-dependent RNA helic 99.8 4.6E-20 1.6E-24 137.4 10.1 119 8-134 6-133 (175)
10 3i32_A Heat resistant RNA depe 99.8 9.8E-20 3.4E-24 146.9 9.9 115 12-134 7-121 (300)
11 2yjt_D ATP-dependent RNA helic 99.7 4E-21 1.4E-25 142.6 0.0 119 7-133 1-122 (170)
12 2db3_A ATP-dependent RNA helic 99.8 1.5E-18 5.2E-23 146.1 11.0 110 16-134 284-393 (434)
13 2v1x_A ATP-dependent DNA helic 99.8 2E-17 6.7E-22 144.4 15.6 86 88-175 271-363 (591)
14 1oyw_A RECQ helicase, ATP-depe 99.7 4.7E-17 1.6E-21 140.2 16.2 140 33-174 64-331 (523)
15 2i4i_A ATP-dependent RNA helic 99.7 3.3E-17 1.1E-21 135.9 13.3 122 6-134 246-369 (417)
16 2j0s_A ATP-dependent RNA helic 99.7 9.1E-17 3.1E-21 133.2 10.2 106 20-133 263-368 (410)
17 3i5x_A ATP-dependent RNA helic 99.7 7E-17 2.4E-21 139.5 8.5 104 23-133 328-434 (563)
18 3fht_A ATP-dependent RNA helic 99.7 2.8E-16 9.5E-21 129.9 11.8 108 19-134 252-365 (412)
19 1hv8_A Putative ATP-dependent 99.7 3.9E-16 1.3E-20 126.9 11.8 110 16-134 222-331 (367)
20 3sqw_A ATP-dependent RNA helic 99.7 9.3E-17 3.2E-21 139.6 8.6 104 23-133 277-383 (579)
21 1xti_A Probable ATP-dependent 99.7 1.5E-16 5.1E-21 130.8 8.9 111 16-134 233-343 (391)
22 3pey_A ATP-dependent RNA helic 99.7 3.6E-16 1.2E-20 128.2 10.9 121 6-134 213-342 (395)
23 1s2m_A Putative ATP-dependent 99.7 2E-16 7E-21 130.6 8.5 122 5-134 228-351 (400)
24 2hjv_A ATP-dependent RNA helic 99.6 1E-15 3.5E-20 112.6 10.3 101 71-173 20-129 (163)
25 4a2p_A RIG-I, retinoic acid in 99.6 3.2E-16 1.1E-20 134.3 7.9 108 19-134 372-495 (556)
26 3eiq_A Eukaryotic initiation f 99.6 1.5E-16 5.2E-21 131.7 5.5 108 19-134 266-373 (414)
27 1tf5_A Preprotein translocase 99.6 2.5E-16 8.6E-21 140.4 6.2 122 4-134 396-531 (844)
28 3eaq_A Heat resistant RNA depe 99.6 1.3E-15 4.5E-20 116.7 8.9 88 84-173 31-125 (212)
29 2p6n_A ATP-dependent RNA helic 99.6 1.9E-15 6.5E-20 114.2 9.4 102 70-173 39-148 (191)
30 1t5i_A C_terminal domain of A 99.6 1.6E-15 5.5E-20 112.6 8.5 101 71-173 16-125 (172)
31 4gl2_A Interferon-induced heli 99.6 1.3E-16 4.4E-21 141.0 2.5 94 34-134 400-507 (699)
32 3fmp_B ATP-dependent RNA helic 99.6 5.7E-17 2E-21 137.6 0.0 108 19-134 319-432 (479)
33 2d7d_A Uvrabc system protein B 99.6 4.8E-15 1.6E-19 130.9 11.7 116 12-134 422-543 (661)
34 2rb4_A ATP-dependent RNA helic 99.6 4.9E-15 1.7E-19 110.0 10.0 99 73-173 21-134 (175)
35 1c4o_A DNA nucleotide excision 99.6 6.1E-15 2.1E-19 130.3 11.5 122 12-140 416-546 (664)
36 2ykg_A Probable ATP-dependent 99.6 2.7E-16 9.2E-21 138.8 2.3 108 19-134 380-503 (696)
37 2jgn_A DBX, DDX3, ATP-dependen 99.6 3.9E-15 1.3E-19 111.9 8.2 88 84-173 46-140 (185)
38 3tbk_A RIG-I helicase domain; 99.6 4.7E-15 1.6E-19 126.7 9.2 109 19-173 371-495 (555)
39 2z0m_A 337AA long hypothetical 99.6 6.9E-15 2.4E-19 118.3 8.9 116 7-134 194-309 (337)
40 1wp9_A ATP-dependent RNA helic 99.6 1.8E-14 6.3E-19 120.3 11.3 109 19-134 343-462 (494)
41 3jux_A Protein translocase sub 99.6 4.5E-15 1.5E-19 130.6 7.4 122 4-134 438-573 (822)
42 3i32_A Heat resistant RNA depe 99.6 8.9E-15 3E-19 117.8 8.6 100 72-173 14-122 (300)
43 3oiy_A Reverse gyrase helicase 99.6 6.7E-15 2.3E-19 122.5 8.0 112 7-134 228-347 (414)
44 2db3_A ATP-dependent RNA helic 99.6 1.4E-14 4.7E-19 121.9 9.7 165 8-173 202-397 (434)
45 4a2q_A RIG-I, retinoic acid in 99.5 6.5E-15 2.2E-19 132.4 7.3 108 19-134 613-736 (797)
46 4a2w_A RIG-I, retinoic acid in 99.5 5.4E-15 1.9E-19 135.0 6.4 108 19-134 613-736 (936)
47 1fuu_A Yeast initiation factor 99.5 6.5E-16 2.2E-20 126.9 0.0 107 20-134 246-352 (394)
48 2v6i_A RNA helicase; membrane, 99.5 1E-14 3.4E-19 122.8 6.3 118 21-173 160-277 (431)
49 1yks_A Genome polyprotein [con 99.5 5.2E-15 1.8E-19 124.9 4.5 117 24-173 169-285 (440)
50 1xti_A Probable ATP-dependent 99.5 2.7E-13 9.2E-18 111.3 14.7 85 88-174 254-345 (391)
51 2whx_A Serine protease/ntpase/ 99.5 1.4E-14 4.7E-19 127.1 6.7 120 23-174 346-465 (618)
52 2fsf_A Preprotein translocase 99.5 1.5E-14 5.3E-19 128.9 6.9 123 4-134 405-569 (853)
53 3fho_A ATP-dependent RNA helic 99.5 2.3E-15 8E-20 129.0 1.0 108 19-134 343-456 (508)
54 3o8b_A HCV NS3 protease/helica 99.5 1.1E-14 3.8E-19 128.0 5.0 97 33-172 395-502 (666)
55 4ddu_A Reverse gyrase; topoiso 99.5 5.7E-14 1.9E-18 130.0 9.2 100 5-120 283-388 (1104)
56 2yjt_D ATP-dependent RNA helic 99.2 3.6E-15 1.2E-19 110.3 0.0 87 85-173 31-124 (170)
57 1nkt_A Preprotein translocase 99.5 6.9E-14 2.4E-18 125.2 7.8 98 4-109 424-527 (922)
58 4a4z_A Antiviral helicase SKI2 99.5 1.6E-13 5.5E-18 125.9 9.6 110 16-134 319-476 (997)
59 3i5x_A ATP-dependent RNA helic 99.4 2.4E-13 8.2E-18 117.3 9.8 89 83-173 338-436 (563)
60 2xau_A PRE-mRNA-splicing facto 99.4 7E-14 2.4E-18 125.3 6.4 95 33-134 302-430 (773)
61 3sqw_A ATP-dependent RNA helic 99.4 2.6E-13 8.8E-18 117.9 9.8 89 83-173 287-385 (579)
62 3eiq_A Eukaryotic initiation f 99.4 4.9E-13 1.7E-17 110.5 10.8 84 88-173 284-374 (414)
63 3dmq_A RNA polymerase-associat 99.4 1.2E-13 4.1E-18 126.5 7.4 107 19-133 489-598 (968)
64 1z5z_A Helicase of the SNF2/RA 99.4 9.8E-13 3.4E-17 104.4 11.5 106 18-130 95-204 (271)
65 2i4i_A ATP-dependent RNA helic 99.4 5.6E-13 1.9E-17 110.3 9.5 101 71-173 260-370 (417)
66 1gku_B Reverse gyrase, TOP-RG; 99.4 1.7E-13 5.7E-18 126.5 6.7 98 6-119 250-352 (1054)
67 2xgj_A ATP-dependent RNA helic 99.4 6.2E-13 2.1E-17 122.2 9.2 106 21-134 331-483 (1010)
68 3rc3_A ATP-dependent RNA helic 99.4 4.5E-13 1.5E-17 118.4 7.7 93 34-134 320-428 (677)
69 2j0s_A ATP-dependent RNA helic 99.4 5.2E-13 1.8E-17 110.5 7.3 87 85-173 277-370 (410)
70 1gm5_A RECG; helicase, replica 99.4 7.7E-13 2.6E-17 118.6 8.8 139 33-173 416-684 (780)
71 2jlq_A Serine protease subunit 99.4 3.1E-13 1.1E-17 114.3 5.8 96 25-134 181-296 (451)
72 3pey_A ATP-dependent RNA helic 99.4 2.1E-12 7.1E-17 105.8 10.1 102 70-173 227-343 (395)
73 3fht_A ATP-dependent RNA helic 99.4 2E-12 6.8E-17 106.7 9.9 101 71-173 251-366 (412)
74 3l9o_A ATP-dependent RNA helic 99.4 3.1E-13 1.1E-17 125.1 5.4 106 21-134 429-581 (1108)
75 1hv8_A Putative ATP-dependent 99.4 2.4E-12 8.3E-17 104.3 9.8 102 70-173 223-332 (367)
76 2va8_A SSO2462, SKI2-type heli 99.4 3.9E-12 1.3E-16 112.9 11.8 105 20-134 241-392 (715)
77 1fuu_A Yeast initiation factor 99.4 7.4E-13 2.5E-17 108.6 6.2 85 87-173 262-353 (394)
78 1s2m_A Putative ATP-dependent 99.4 3.1E-12 1.1E-16 105.4 9.9 102 70-173 242-352 (400)
79 2wv9_A Flavivirin protease NS2 99.3 3.8E-13 1.3E-17 118.9 4.2 97 24-134 402-518 (673)
80 2d7d_A Uvrabc system protein B 99.3 2.8E-12 9.5E-17 113.3 8.9 95 77-173 438-544 (661)
81 4gl2_A Interferon-induced heli 99.3 1E-12 3.5E-17 116.0 6.0 88 84-173 400-508 (699)
82 2zj8_A DNA helicase, putative 99.3 1.7E-12 6E-17 115.3 7.2 106 19-134 225-371 (720)
83 1c4o_A DNA nucleotide excision 99.3 3.1E-12 1.1E-16 113.0 8.6 95 77-173 432-538 (664)
84 2z83_A Helicase/nucleoside tri 99.3 3.7E-13 1.3E-17 114.1 2.6 96 25-134 183-298 (459)
85 3oiy_A Reverse gyrase helicase 99.3 3.3E-11 1.1E-15 100.1 14.3 80 87-174 255-349 (414)
86 2oca_A DAR protein, ATP-depend 99.3 4.8E-12 1.6E-16 107.9 8.3 103 21-131 333-438 (510)
87 2p6r_A Afuhel308 helicase; pro 99.3 2E-12 6.9E-17 114.7 5.9 105 20-134 231-372 (702)
88 2ykg_A Probable ATP-dependent 99.3 2.5E-12 8.4E-17 113.5 5.5 87 84-173 398-504 (696)
89 2eyq_A TRCF, transcription-rep 99.3 1.5E-11 5.1E-16 114.4 10.3 123 4-134 783-908 (1151)
90 2fwr_A DNA repair protein RAD2 99.3 5.4E-13 1.8E-17 112.8 0.6 103 19-134 335-437 (472)
91 2eyq_A TRCF, transcription-rep 99.3 1.1E-10 3.9E-15 108.6 15.9 139 33-173 651-909 (1151)
92 3rc3_A ATP-dependent RNA helic 99.2 1E-10 3.5E-15 103.4 14.3 85 88-175 324-431 (677)
93 2xau_A PRE-mRNA-splicing facto 99.2 2E-11 6.8E-16 109.5 9.2 138 33-173 239-431 (773)
94 3h1t_A Type I site-specific re 99.2 1.1E-11 3.7E-16 107.8 7.3 103 24-134 429-542 (590)
95 3fmp_B ATP-dependent RNA helic 99.2 7.7E-13 2.6E-17 112.1 0.0 88 84-173 333-433 (479)
96 4a2p_A RIG-I, retinoic acid in 99.2 7.1E-12 2.4E-16 107.2 5.5 89 82-173 388-496 (556)
97 2z0m_A 337AA long hypothetical 99.2 2.4E-11 8.4E-16 97.4 7.4 86 82-173 218-310 (337)
98 3fho_A ATP-dependent RNA helic 99.2 2.4E-11 8.2E-16 104.1 6.0 101 71-173 342-457 (508)
99 1tf5_A Preprotein translocase 99.2 4.4E-11 1.5E-15 106.9 7.4 88 84-173 432-535 (844)
100 1z63_A Helicase of the SNF2/RA 99.2 3.4E-11 1.2E-15 102.4 6.5 107 19-132 325-435 (500)
101 2va8_A SSO2462, SKI2-type heli 99.1 3.5E-10 1.2E-14 100.4 12.6 141 33-175 174-395 (715)
102 1wp9_A ATP-dependent RNA helic 99.1 4.9E-11 1.7E-15 99.4 6.7 90 83-174 360-464 (494)
103 2p6r_A Afuhel308 helicase; pro 99.1 2E-10 6.9E-15 101.8 10.2 153 21-175 159-375 (702)
104 4a2w_A RIG-I, retinoic acid in 99.1 4.9E-11 1.7E-15 109.0 6.3 88 83-173 630-737 (936)
105 1gm5_A RECG; helicase, replica 99.1 4.5E-12 1.6E-16 113.6 -0.8 121 6-134 550-683 (780)
106 4a2q_A RIG-I, retinoic acid in 99.1 5.6E-11 1.9E-15 106.8 6.3 88 83-173 630-737 (797)
107 4ddu_A Reverse gyrase; topoiso 99.1 5.3E-10 1.8E-14 103.6 12.8 63 88-156 313-388 (1104)
108 4f92_B U5 small nuclear ribonu 99.1 1.1E-10 3.7E-15 112.0 7.5 96 32-134 315-457 (1724)
109 3l9o_A ATP-dependent RNA helic 99.1 4.2E-10 1.4E-14 104.4 11.1 98 76-175 432-584 (1108)
110 2wv9_A Flavivirin protease NS2 99.1 2.4E-11 8.2E-16 107.4 2.7 156 8-173 331-519 (673)
111 1z3i_X Similar to RAD54-like; 99.1 3E-10 1E-14 100.0 9.3 106 20-132 400-510 (644)
112 4f92_B U5 small nuclear ribonu 99.1 1.2E-10 4.2E-15 111.7 7.0 104 24-134 1145-1292(1724)
113 2xgj_A ATP-dependent RNA helic 99.1 1.5E-09 5.2E-14 99.8 13.6 98 76-175 334-486 (1010)
114 3jux_A Protein translocase sub 99.1 4.2E-10 1.4E-14 99.4 8.8 88 84-173 474-577 (822)
115 4a4z_A Antiviral helicase SKI2 99.0 3.3E-10 1.1E-14 104.1 8.2 102 71-175 322-479 (997)
116 1gku_B Reverse gyrase, TOP-RG; 99.0 6.8E-10 2.3E-14 102.6 10.2 64 86-155 277-352 (1054)
117 3dmq_A RNA polymerase-associat 99.0 3.7E-10 1.3E-14 103.6 7.4 103 71-173 488-603 (968)
118 2oca_A DAR protein, ATP-depend 99.0 7.3E-10 2.5E-14 94.4 7.8 88 83-173 347-442 (510)
119 2jlq_A Serine protease subunit 99.0 4.3E-10 1.5E-14 95.0 6.1 84 84-174 188-298 (451)
120 2zj8_A DNA helicase, putative 99.0 5.5E-10 1.9E-14 99.3 6.9 140 34-175 169-374 (720)
121 2fsf_A Preprotein translocase 98.9 1.8E-09 6.1E-14 96.6 7.8 103 69-173 422-573 (853)
122 3mwy_W Chromo domain-containin 98.9 2.5E-09 8.5E-14 96.3 8.9 107 19-132 556-666 (800)
123 2z83_A Helicase/nucleoside tri 98.8 6.2E-10 2.1E-14 94.3 1.9 84 84-174 190-300 (459)
124 1nkt_A Preprotein translocase 98.8 6.9E-09 2.4E-13 93.2 8.2 87 85-173 461-607 (922)
125 1z63_A Helicase of the SNF2/RA 98.8 1.1E-08 3.7E-13 87.0 8.4 97 76-172 333-440 (500)
126 2fwr_A DNA repair protein RAD2 98.7 2.5E-09 8.6E-14 90.2 1.5 84 84-174 349-439 (472)
127 1z3i_X Similar to RAD54-like; 98.7 5.9E-08 2E-12 85.4 9.9 90 83-172 415-515 (644)
128 3h1t_A Type I site-specific re 98.7 1.5E-08 5.3E-13 87.9 6.1 86 85-173 440-543 (590)
129 3mwy_W Chromo domain-containin 98.5 3.3E-07 1.1E-11 82.5 9.0 97 76-172 564-671 (800)
130 2w00_A HSDR, R.ECOR124I; ATP-b 98.5 2.4E-07 8.2E-12 85.4 7.6 93 34-134 537-691 (1038)
131 1fuk_A Eukaryotic initiation f 98.3 2E-06 7E-11 62.5 8.2 88 84-173 30-124 (165)
132 1yks_A Genome polyprotein [con 98.1 4.3E-07 1.5E-11 76.4 0.5 137 8-154 98-249 (440)
133 2whx_A Serine protease/ntpase/ 98.0 4.3E-06 1.5E-10 73.3 4.4 75 78-157 349-430 (618)
134 2v6i_A RNA helicase; membrane, 97.9 4.7E-06 1.6E-10 69.8 3.7 142 7-156 91-245 (431)
135 2w00_A HSDR, R.ECOR124I; ATP-b 97.9 2.1E-05 7.3E-10 72.6 8.0 87 85-172 538-694 (1038)
136 2l82_A Designed protein OR32; 97.9 0.00074 2.5E-08 45.6 13.4 106 38-143 6-138 (162)
137 3o8b_A HCV NS3 protease/helica 97.7 6.3E-05 2.2E-09 66.3 6.4 65 85-157 397-468 (666)
138 2vl7_A XPD; helicase, unknown 97.4 0.00024 8.1E-09 61.2 5.8 75 33-120 383-463 (540)
139 1z5z_A Helicase of the SNF2/RA 97.2 0.00078 2.7E-08 52.9 7.1 97 76-172 104-211 (271)
140 3tbk_A RIG-I helicase domain; 96.6 0.0017 5.9E-08 54.9 4.4 61 84-144 389-462 (555)
141 3fe2_A Probable ATP-dependent 96.0 0.055 1.9E-06 41.0 9.8 57 34-94 102-162 (242)
142 3ber_A Probable ATP-dependent 95.5 0.048 1.6E-06 41.7 7.7 57 34-94 111-171 (249)
143 3iuy_A Probable ATP-dependent 95.5 0.12 4.2E-06 38.5 9.7 58 33-94 93-153 (228)
144 1t6n_A Probable ATP-dependent 95.4 0.055 1.9E-06 40.2 7.3 56 35-93 83-143 (220)
145 4a15_A XPD helicase, ATP-depen 95.1 0.048 1.6E-06 47.6 6.9 78 33-119 447-526 (620)
146 2oxc_A Probable ATP-dependent 94.9 0.05 1.7E-06 40.9 5.9 56 33-93 91-151 (230)
147 1vec_A ATP-dependent RNA helic 94.7 0.45 1.5E-05 34.6 10.6 57 34-94 71-132 (206)
148 2pl3_A Probable ATP-dependent 94.6 0.2 6.9E-06 37.5 8.6 56 33-93 96-155 (236)
149 3bor_A Human initiation factor 94.3 0.2 6.9E-06 37.7 8.1 59 33-94 97-159 (237)
150 1q0u_A Bstdead; DEAD protein, 94.2 0.065 2.2E-06 39.8 4.9 57 34-94 72-136 (219)
151 3ly5_A ATP-dependent RNA helic 93.9 0.67 2.3E-05 35.5 10.4 58 33-94 125-186 (262)
152 1wrb_A DJVLGB; RNA helicase, D 93.5 0.14 4.7E-06 38.9 5.9 56 35-94 101-160 (253)
153 2gxq_A Heat resistant RNA depe 93.5 0.22 7.4E-06 36.3 6.8 58 33-94 71-130 (207)
154 2ipc_A Preprotein translocase 93.2 0.3 1E-05 44.6 8.0 56 33-94 119-178 (997)
155 3dkp_A Probable ATP-dependent 92.9 0.15 5.2E-06 38.4 5.1 58 34-94 98-159 (245)
156 1qde_A EIF4A, translation init 92.6 0.084 2.9E-06 39.2 3.3 57 33-94 81-141 (224)
157 3gk5_A Uncharacterized rhodane 91.9 0.18 6E-06 33.4 3.9 49 21-69 42-90 (108)
158 3g5j_A Putative ATP/GTP bindin 91.7 0.24 8.3E-06 33.6 4.6 48 23-70 77-126 (134)
159 3fmo_B ATP-dependent RNA helic 91.6 0.13 4.6E-06 40.5 3.5 79 9-94 133-220 (300)
160 2ipc_A Preprotein translocase 90.3 0.51 1.8E-05 43.1 6.3 52 4-55 407-464 (997)
161 2jtq_A Phage shock protein E; 90.1 0.69 2.4E-05 28.8 5.3 47 22-69 27-76 (85)
162 2vl7_A XPD; helicase, unknown 89.7 1 3.6E-05 38.3 7.6 71 83-159 383-466 (540)
163 2fz4_A DNA repair protein RAD2 88.9 2.4 8E-05 31.9 8.4 59 19-92 120-179 (237)
164 3ipz_A Monothiol glutaredoxin- 88.9 3 0.0001 27.4 8.0 56 33-88 16-77 (109)
165 3foj_A Uncharacterized protein 88.7 0.36 1.2E-05 31.3 3.2 37 33-69 55-91 (100)
166 1gmx_A GLPE protein; transfera 88.2 0.53 1.8E-05 30.8 3.8 48 22-69 46-94 (108)
167 3eme_A Rhodanese-like domain p 87.9 0.35 1.2E-05 31.5 2.7 37 33-69 55-91 (103)
168 3zyw_A Glutaredoxin-3; metal b 87.8 3.4 0.00012 27.3 7.7 56 33-88 14-75 (111)
169 1wv9_A Rhodanese homolog TT165 87.5 0.49 1.7E-05 30.2 3.3 35 35-69 54-88 (94)
170 3iwh_A Rhodanese-like domain p 87.5 0.38 1.3E-05 31.7 2.7 36 33-68 55-90 (103)
171 3flh_A Uncharacterized protein 87.3 0.33 1.1E-05 32.9 2.4 49 21-69 58-108 (124)
172 3b6e_A Interferon-induced heli 87.2 0.66 2.2E-05 33.7 4.2 55 34-92 82-140 (216)
173 3jy6_A Transcriptional regulat 87.2 6.6 0.00022 29.5 10.1 16 95-110 109-124 (276)
174 3ipz_A Monothiol glutaredoxin- 86.9 4.8 0.00016 26.3 8.8 72 66-139 1-78 (109)
175 3hix_A ALR3790 protein; rhodan 85.5 0.79 2.7E-05 30.0 3.5 37 33-69 51-88 (106)
176 3h75_A Periplasmic sugar-bindi 85.1 8.2 0.00028 30.1 10.0 73 49-121 25-99 (350)
177 3dbi_A Sugar-binding transcrip 84.9 8.3 0.00028 29.9 9.9 75 46-120 81-155 (338)
178 2yan_A Glutaredoxin-3; oxidore 84.8 5.3 0.00018 25.7 7.4 55 34-88 16-76 (105)
179 3l49_A ABC sugar (ribose) tran 84.6 9.6 0.00033 28.6 9.9 10 97-106 111-120 (291)
180 3o74_A Fructose transport syst 84.6 5.1 0.00017 29.8 8.2 25 90-114 101-125 (272)
181 2k0z_A Uncharacterized protein 84.3 1.1 3.9E-05 29.4 3.9 37 33-69 55-91 (110)
182 3tb6_A Arabinose metabolism tr 84.3 9.8 0.00033 28.6 9.8 72 48-119 35-110 (298)
183 3m9w_A D-xylose-binding peripl 83.3 12 0.00042 28.5 10.1 26 89-114 102-128 (313)
184 3gx8_A Monothiol glutaredoxin- 82.7 8.2 0.00028 25.8 7.8 56 33-88 14-78 (121)
185 3uug_A Multiple sugar-binding 82.5 12 0.00041 28.7 9.9 74 47-120 22-96 (330)
186 3nhv_A BH2092 protein; alpha-b 82.1 0.94 3.2E-05 31.5 2.9 37 33-69 71-109 (144)
187 2fsx_A RV0390, COG0607: rhodan 81.7 1.3 4.3E-05 30.9 3.4 37 33-69 79-116 (148)
188 2xw6_A MGS, methylglyoxal synt 81.1 11 0.00037 26.1 8.0 78 6-93 2-83 (134)
189 1tq1_A AT5G66040, senescence-a 81.0 0.96 3.3E-05 30.7 2.6 37 33-69 81-118 (129)
190 3l6u_A ABC-type sugar transpor 80.7 15 0.00053 27.5 9.7 74 47-120 27-101 (293)
191 2hhg_A Hypothetical protein RP 80.0 1.1 3.8E-05 30.6 2.6 37 33-69 85-122 (139)
192 3d1p_A Putative thiosulfate su 79.9 1.2 4.2E-05 30.5 2.8 37 33-69 90-127 (139)
193 2wci_A Glutaredoxin-4; redox-a 79.8 6 0.00021 27.2 6.4 64 21-88 25-94 (135)
194 1rif_A DAR protein, DNA helica 79.4 3.5 0.00012 31.6 5.6 53 33-92 156-212 (282)
195 3ilm_A ALR3790 protein; rhodan 79.2 1.7 5.9E-05 30.0 3.4 37 33-69 55-92 (141)
196 1qxn_A SUD, sulfide dehydrogen 79.1 1.1 3.7E-05 30.9 2.3 37 33-69 81-118 (137)
197 3egc_A Putative ribose operon 79.0 8.8 0.0003 28.9 7.8 59 49-110 55-126 (291)
198 3crv_A XPD/RAD3 related DNA he 78.9 2.1 7.3E-05 36.4 4.6 74 33-119 392-472 (551)
199 3e61_A Putative transcriptiona 78.2 15 0.00053 27.2 8.9 20 91-110 104-123 (277)
200 3g1w_A Sugar ABC transporter; 77.4 17 0.00058 27.4 9.1 22 69-90 46-67 (305)
201 2wem_A Glutaredoxin-related pr 77.0 14 0.00047 24.7 8.7 63 22-88 11-80 (118)
202 3ksm_A ABC-type sugar transpor 77.0 18 0.00062 26.7 9.0 73 47-119 19-95 (276)
203 3kke_A LACI family transcripti 76.6 19 0.00064 27.4 9.1 37 55-91 42-78 (303)
204 2rgy_A Transcriptional regulat 76.3 17 0.00058 27.4 8.7 15 96-110 115-129 (290)
205 2l82_A Designed protein OR32; 76.1 15 0.00051 24.6 7.9 48 45-92 87-137 (162)
206 1x60_A Sporulation-specific N- 75.8 8.8 0.0003 23.3 5.8 60 41-115 17-77 (79)
207 2ark_A Flavodoxin; FMN, struct 75.7 17 0.00058 25.9 8.2 46 42-94 17-63 (188)
208 3k4h_A Putative transcriptiona 75.7 16 0.00055 27.3 8.4 15 96-110 118-132 (292)
209 2iks_A DNA-binding transcripti 75.6 14 0.00047 27.9 8.0 15 96-110 125-139 (293)
210 1u6t_A SH3 domain-binding glut 75.5 5 0.00017 27.3 4.8 41 40-80 12-52 (121)
211 2l69_A Rossmann 2X3 fold prote 75.1 14 0.00049 23.9 11.0 92 39-133 7-101 (134)
212 1vee_A Proline-rich protein fa 75.0 2 6.8E-05 29.3 2.7 37 33-69 73-110 (134)
213 1wik_A Thioredoxin-like protei 74.7 14 0.00049 23.8 7.0 54 35-88 15-74 (109)
214 2amj_A Modulator of drug activ 74.2 11 0.00037 27.6 6.8 64 46-131 35-98 (204)
215 2vk2_A YTFQ, ABC transporter p 74.1 24 0.00081 26.8 9.1 72 48-119 22-94 (306)
216 3rot_A ABC sugar transporter, 73.2 26 0.00089 26.4 9.1 73 48-120 23-98 (297)
217 1uar_A Rhodanese; sulfurtransf 72.6 4.3 0.00015 31.1 4.5 48 22-69 219-270 (285)
218 3l21_A DHDPS, dihydrodipicolin 71.8 34 0.0012 26.7 11.5 95 46-140 37-147 (304)
219 2fep_A Catabolite control prot 71.7 29 0.001 26.0 10.1 19 95-113 119-137 (289)
220 3bil_A Probable LACI-family tr 71.4 32 0.0011 26.8 9.4 70 48-118 86-155 (348)
221 3hcw_A Maltose operon transcri 71.2 23 0.00079 26.7 8.4 19 94-112 116-134 (295)
222 1urh_A 3-mercaptopyruvate sulf 70.5 3.5 0.00012 31.6 3.5 48 23-70 217-267 (280)
223 3d8u_A PURR transcriptional re 70.5 30 0.001 25.5 9.0 16 95-110 106-121 (275)
224 2fvy_A D-galactose-binding per 70.2 32 0.0011 25.8 10.2 73 47-119 21-95 (309)
225 1t1v_A SH3BGRL3, SH3 domain-bi 68.8 9.4 0.00032 23.9 4.8 45 45-89 19-65 (93)
226 3b4u_A Dihydrodipicolinate syn 68.2 35 0.0012 26.4 8.9 94 47-140 26-139 (294)
227 3tg1_B Dual specificity protei 68.1 3.2 0.00011 29.1 2.6 36 34-69 93-137 (158)
228 1dbq_A Purine repressor; trans 68.0 35 0.0012 25.4 10.1 15 96-110 113-127 (289)
229 2vzf_A NADH-dependent FMN redu 67.6 18 0.00061 26.0 6.7 51 43-94 18-80 (197)
230 2x7x_A Sensor protein; transfe 67.6 39 0.0013 25.8 9.4 26 95-120 112-139 (325)
231 2eg4_A Probable thiosulfate su 67.2 4.2 0.00014 30.2 3.2 37 33-69 183-219 (230)
232 2fn9_A Ribose ABC transporter, 67.1 36 0.0012 25.3 9.8 71 48-118 22-93 (290)
233 2rjo_A Twin-arginine transloca 66.7 37 0.0013 26.0 8.9 72 48-119 25-99 (332)
234 2ehh_A DHDPS, dihydrodipicolin 66.6 38 0.0013 26.3 8.8 94 47-140 23-132 (294)
235 3flu_A DHDPS, dihydrodipicolin 66.6 37 0.0013 26.4 8.7 94 47-140 30-139 (297)
236 4fn4_A Short chain dehydrogena 66.5 40 0.0014 25.6 9.4 68 23-92 22-92 (254)
237 2yan_A Glutaredoxin-3; oxidore 66.2 22 0.00077 22.5 8.6 70 68-139 2-77 (105)
238 3h11_B Caspase-8; cell death, 66.2 23 0.00079 27.3 7.4 39 43-82 47-85 (271)
239 3kjx_A Transcriptional regulat 65.8 44 0.0015 25.8 9.4 13 97-109 173-185 (344)
240 3a5f_A Dihydrodipicolinate syn 65.7 40 0.0014 26.0 8.8 94 47-140 24-133 (291)
241 2a5l_A Trp repressor binding p 65.5 16 0.00055 26.0 6.1 24 42-65 18-41 (200)
242 1e0c_A Rhodanese, sulfurtransf 65.3 5.1 0.00017 30.5 3.4 37 33-69 222-259 (271)
243 1fiu_A Type II restriction enz 65.3 8.4 0.00029 29.7 4.5 57 65-122 191-250 (286)
244 3cpr_A Dihydrodipicolinate syn 65.2 47 0.0016 25.9 9.3 95 46-140 38-148 (304)
245 2q62_A ARSH; alpha/beta, flavo 65.2 42 0.0014 25.3 8.6 66 44-130 51-125 (247)
246 3gv0_A Transcriptional regulat 65.0 29 0.001 25.9 7.8 67 48-117 56-135 (288)
247 3e4c_A Caspase-1; zymogen, inf 64.9 36 0.0012 26.7 8.4 47 35-82 61-118 (302)
248 2yxg_A DHDPS, dihydrodipicolin 64.8 43 0.0015 25.8 8.8 94 47-140 23-132 (289)
249 2wlr_A Putative thiosulfate su 64.7 8.8 0.0003 31.4 4.9 48 22-69 189-239 (423)
250 3huu_A Transcription regulator 64.7 30 0.001 26.1 7.8 68 50-118 49-116 (305)
251 3c3k_A Alanine racemase; struc 64.5 41 0.0014 25.0 9.7 16 95-110 110-125 (285)
252 3daq_A DHDPS, dihydrodipicolin 64.5 37 0.0012 26.3 8.3 93 48-140 26-134 (292)
253 3s5o_A 4-hydroxy-2-oxoglutarat 64.4 37 0.0013 26.5 8.4 94 47-140 37-148 (307)
254 2wkj_A N-acetylneuraminate lya 64.1 39 0.0013 26.3 8.4 94 47-140 34-144 (303)
255 2ohh_A Type A flavoprotein FPR 64.0 25 0.00085 28.0 7.5 23 43-65 270-292 (404)
256 3qze_A DHDPS, dihydrodipicolin 63.9 38 0.0013 26.6 8.4 95 46-140 45-155 (314)
257 8abp_A L-arabinose-binding pro 63.8 44 0.0015 25.0 9.5 69 48-117 22-91 (306)
258 3bbl_A Regulatory protein of L 63.7 26 0.00089 26.2 7.2 59 49-110 55-126 (287)
259 3na8_A Putative dihydrodipicol 63.7 35 0.0012 26.8 8.1 96 45-140 45-156 (315)
260 2o20_A Catabolite control prot 63.7 48 0.0016 25.4 9.6 68 48-116 83-150 (332)
261 2dri_A D-ribose-binding protei 63.7 42 0.0014 24.8 9.4 14 76-89 49-62 (271)
262 2ioy_A Periplasmic sugar-bindi 63.3 44 0.0015 24.9 9.3 26 95-120 107-134 (283)
263 1t6n_A Probable ATP-dependent 63.1 22 0.00076 25.5 6.5 54 84-140 82-140 (220)
264 1uta_A FTSN, MSGA, cell divisi 62.4 16 0.00054 22.4 4.8 59 41-114 17-76 (81)
265 3brq_A HTH-type transcriptiona 62.2 45 0.0016 24.7 10.5 12 98-109 128-139 (296)
266 1sqs_A Conserved hypothetical 62.1 45 0.0015 24.6 9.0 17 113-129 89-105 (242)
267 3aay_A Putative thiosulfate su 62.1 13 0.00044 28.3 5.2 47 23-69 213-263 (277)
268 1tjy_A Sugar transport protein 62.1 50 0.0017 25.2 9.3 70 49-118 24-95 (316)
269 3k9c_A Transcriptional regulat 62.1 45 0.0016 24.9 8.4 23 91-113 108-130 (289)
270 1b93_A Protein (methylglyoxal 62.1 34 0.0012 24.1 6.9 77 8-93 12-91 (152)
271 1vmd_A MGS, methylglyoxal synt 62.0 42 0.0014 24.3 9.5 43 50-93 64-107 (178)
272 1o5k_A DHDPS, dihydrodipicolin 61.9 45 0.0015 26.0 8.4 95 46-140 34-144 (306)
273 2j6p_A SB(V)-AS(V) reductase; 61.5 11 0.00038 26.0 4.4 48 21-70 56-112 (152)
274 3fni_A Putative diflavin flavo 61.5 17 0.00059 25.3 5.4 57 37-95 8-68 (159)
275 3m5v_A DHDPS, dihydrodipicolin 61.2 52 0.0018 25.5 8.7 95 46-140 29-140 (301)
276 1rtt_A Conserved hypothetical 61.1 26 0.00091 24.8 6.5 18 113-130 82-99 (193)
277 1f6k_A N-acetylneuraminate lya 61.0 53 0.0018 25.4 8.6 94 47-140 26-136 (293)
278 3qmx_A Glutaredoxin A, glutare 60.9 29 0.00098 22.0 6.8 55 34-88 15-71 (99)
279 2r8w_A AGR_C_1641P; APC7498, d 60.6 48 0.0016 26.2 8.5 131 3-140 10-166 (332)
280 2q9u_A A-type flavoprotein; fl 60.5 31 0.0011 27.7 7.5 18 112-129 316-333 (414)
281 3miz_A Putative transcriptiona 60.3 15 0.00053 27.7 5.4 70 45-116 31-100 (301)
282 3eb2_A Putative dihydrodipicol 60.3 35 0.0012 26.6 7.5 95 46-140 26-136 (300)
283 3hzu_A Thiosulfate sulfurtrans 60.3 5.4 0.00018 31.5 2.8 48 22-69 247-296 (318)
284 1d4a_A DT-diaphorase, quinone 60.1 49 0.0017 25.2 8.3 19 113-131 103-121 (273)
285 2h54_A Caspase-1; allosteric s 60.0 40 0.0014 24.2 7.2 47 35-82 44-101 (178)
286 4f67_A UPF0176 protein LPG2838 60.0 5.6 0.00019 30.8 2.8 37 33-69 180-217 (265)
287 2lqo_A Putative glutaredoxin R 59.9 28 0.00097 22.0 5.8 57 35-92 4-63 (92)
288 3tak_A DHDPS, dihydrodipicolin 59.8 43 0.0015 25.9 7.9 93 48-140 25-133 (291)
289 3si9_A DHDPS, dihydrodipicolin 59.7 46 0.0016 26.2 8.1 96 45-140 43-154 (315)
290 3e3m_A Transcriptional regulat 59.7 59 0.002 25.2 10.3 68 46-114 88-155 (355)
291 2ojp_A DHDPS, dihydrodipicolin 59.6 40 0.0014 26.1 7.7 94 47-140 24-133 (292)
292 3h5o_A Transcriptional regulat 59.6 58 0.002 25.0 9.8 69 45-114 79-147 (339)
293 2rfg_A Dihydrodipicolinate syn 59.5 41 0.0014 26.1 7.8 94 47-140 23-132 (297)
294 3dz1_A Dihydrodipicolinate syn 59.2 53 0.0018 25.7 8.4 94 47-140 31-140 (313)
295 3fkr_A L-2-keto-3-deoxyarabona 59.1 57 0.0019 25.5 8.6 94 47-140 31-143 (309)
296 3aay_A Putative thiosulfate su 59.0 13 0.00043 28.3 4.6 37 33-69 76-114 (277)
297 3brs_A Periplasmic binding pro 58.9 45 0.0015 24.7 7.8 25 96-120 116-142 (289)
298 2v9d_A YAGE; dihydrodipicolini 58.5 46 0.0016 26.5 8.1 95 46-140 53-163 (343)
299 4dik_A Flavoprotein; TM0755, e 58.2 70 0.0024 26.1 9.3 86 44-129 218-316 (410)
300 1gud_A ALBP, D-allose-binding 58.2 55 0.0019 24.4 9.6 72 48-119 21-95 (288)
301 3i2v_A Adenylyltransferase and 58.1 8.6 0.00029 25.3 3.2 35 36-70 74-115 (127)
302 1rhs_A Sulfur-substituted rhod 58.0 8 0.00027 29.9 3.4 48 22-69 226-276 (296)
303 3gbv_A Putative LACI-family tr 57.5 56 0.0019 24.3 8.9 73 48-120 29-106 (304)
304 1urh_A 3-mercaptopyruvate sulf 57.3 8.6 0.00029 29.3 3.4 48 22-69 72-123 (280)
305 3h11_A CAsp8 and FADD-like apo 57.3 6.1 0.00021 30.7 2.5 48 34-82 43-90 (272)
306 3rpe_A MDAB, modulator of drug 56.9 26 0.00088 26.1 5.9 67 45-133 47-113 (218)
307 3hjh_A Transcription-repair-co 56.8 86 0.003 26.2 10.4 71 20-92 27-110 (483)
308 3g5j_A Putative ATP/GTP bindin 56.7 11 0.00038 24.9 3.6 36 85-120 90-126 (134)
309 1jr2_A Uroporphyrinogen-III sy 56.3 11 0.00037 29.0 3.8 75 20-94 142-220 (286)
310 3clk_A Transcription regulator 56.3 28 0.00097 26.0 6.3 19 95-113 111-129 (290)
311 3qfe_A Putative dihydrodipicol 56.3 55 0.0019 25.7 8.1 94 47-140 34-145 (318)
312 3p45_A Caspase-6; protease, hu 56.1 43 0.0015 24.2 6.8 48 34-82 44-105 (179)
313 2hsg_A Glucose-resistance amyl 55.7 46 0.0016 25.5 7.5 64 51-115 83-146 (332)
314 1fov_A Glutaredoxin 3, GRX3; a 55.6 29 0.00099 20.4 6.3 53 37-89 3-56 (82)
315 3ijp_A DHPR, dihydrodipicolina 55.6 71 0.0024 24.8 9.3 80 35-117 89-177 (288)
316 2hmc_A AGR_L_411P, dihydrodipi 55.6 77 0.0026 25.2 10.2 97 47-144 49-160 (344)
317 3eme_A Rhodanese-like domain p 55.3 6.5 0.00022 25.1 2.1 37 83-119 55-91 (103)
318 2vc6_A MOSA, dihydrodipicolina 55.3 70 0.0024 24.7 10.6 94 47-140 23-132 (292)
319 1qtn_A Caspase-8; apoptosis, d 55.1 53 0.0018 23.2 7.3 38 44-82 54-91 (164)
320 1uar_A Rhodanese; sulfurtransf 55.0 16 0.00053 27.9 4.6 37 33-69 78-116 (285)
321 3d7n_A Flavodoxin, WRBA-like p 54.9 30 0.001 24.7 5.9 17 113-129 64-80 (193)
322 3gyb_A Transcriptional regulat 54.9 20 0.0007 26.6 5.2 23 95-117 104-126 (280)
323 1ydg_A Trp repressor binding p 54.5 15 0.00053 26.5 4.3 24 42-65 19-42 (211)
324 2ct6_A SH3 domain-binding glut 54.5 16 0.00054 23.8 4.0 35 46-80 26-60 (111)
325 4f3y_A DHPR, dihydrodipicolina 54.4 68 0.0023 24.6 8.2 78 36-117 75-162 (272)
326 3od5_A Caspase-6; caspase doma 54.4 54 0.0019 25.2 7.6 48 34-82 21-82 (278)
327 3ics_A Coenzyme A-disulfide re 54.0 6 0.0002 33.7 2.2 48 22-69 529-576 (588)
328 3foj_A Uncharacterized protein 53.9 6.6 0.00023 25.0 1.9 37 83-119 55-91 (100)
329 2fzv_A Putative arsenical resi 53.9 74 0.0025 24.6 8.9 66 44-130 75-150 (279)
330 2hpv_A FMN-dependent NADH-azor 53.7 58 0.002 23.2 8.3 19 113-131 104-122 (208)
331 2eg4_A Probable thiosulfate su 53.5 21 0.00072 26.3 5.0 44 23-67 50-95 (230)
332 3hzu_A Thiosulfate sulfurtrans 53.5 16 0.00056 28.6 4.6 46 23-68 98-147 (318)
333 4g81_D Putative hexonate dehyd 53.5 71 0.0024 24.2 8.4 69 23-93 24-95 (255)
334 3hly_A Flavodoxin-like domain; 53.2 23 0.00077 24.6 4.9 24 42-65 13-36 (161)
335 1e0c_A Rhodanese, sulfurtransf 52.7 15 0.0005 27.8 4.1 37 33-69 80-118 (271)
336 3o1i_D Periplasmic protein TOR 52.3 50 0.0017 24.6 7.1 71 48-119 25-98 (304)
337 2guk_A Hypothetical protein PG 52.3 34 0.0011 23.1 5.2 38 77-115 20-57 (120)
338 3mw8_A Uroporphyrinogen-III sy 52.3 4.4 0.00015 30.3 1.0 60 34-94 120-182 (240)
339 3lcm_A SMU.1420, putative oxid 52.1 43 0.0015 24.0 6.4 20 113-132 83-102 (196)
340 4dpp_A DHDPS 2, dihydrodipicol 51.6 93 0.0032 25.0 11.8 94 45-140 80-189 (360)
341 3ntd_A FAD-dependent pyridine 51.6 9.9 0.00034 32.0 3.1 37 33-69 523-559 (565)
342 1qpz_A PURA, protein (purine n 51.4 80 0.0027 24.2 9.5 43 50-92 80-122 (340)
343 1okg_A Possible 3-mercaptopyru 51.4 8.8 0.0003 31.1 2.7 38 34-71 246-284 (373)
344 3hs3_A Ribose operon repressor 51.4 29 0.001 25.8 5.6 41 52-92 34-75 (277)
345 3h75_A Periplasmic sugar-bindi 51.2 81 0.0028 24.2 9.8 36 34-69 62-97 (350)
346 3gk5_A Uncharacterized rhodane 51.1 6.7 0.00023 25.4 1.6 37 83-119 54-90 (108)
347 3d0c_A Dihydrodipicolinate syn 51.0 86 0.003 24.5 10.7 93 47-140 35-143 (314)
348 3olh_A MST, 3-mercaptopyruvate 51.0 6.4 0.00022 30.7 1.7 49 22-70 240-291 (302)
349 4gi5_A Quinone reductase; prot 50.7 84 0.0029 24.2 8.2 22 112-133 121-142 (280)
350 4fn4_A Short chain dehydrogena 50.5 79 0.0027 23.9 8.4 35 86-120 33-67 (254)
351 3hgt_A HDA1 complex subunit 3; 50.3 27 0.00094 27.8 5.3 52 19-70 109-161 (328)
352 3qk7_A Transcriptional regulat 50.2 49 0.0017 24.8 6.8 61 48-111 55-128 (294)
353 1t0i_A YLR011WP; FMN binding p 50.2 63 0.0022 22.7 7.4 35 74-129 76-110 (191)
354 3r6w_A FMN-dependent NADH-azor 50.2 60 0.0021 23.4 7.0 21 113-133 97-117 (212)
355 4dik_A Flavoprotein; TM0755, e 50.1 32 0.0011 28.1 6.0 58 37-95 269-331 (410)
356 2khp_A Glutaredoxin; thioredox 49.5 41 0.0014 20.3 7.2 54 36-89 7-61 (92)
357 1xky_A Dihydrodipicolinate syn 49.5 89 0.0031 24.2 11.3 94 47-140 35-144 (301)
358 3p6l_A Sugar phosphate isomera 49.2 76 0.0026 23.3 8.0 74 43-117 61-136 (262)
359 3b6i_A Flavoprotein WRBA; flav 49.1 40 0.0014 23.7 5.8 24 42-65 14-38 (198)
360 3flh_A Uncharacterized protein 48.9 8.6 0.0003 25.5 1.9 36 84-119 71-108 (124)
361 2zki_A 199AA long hypothetical 48.8 34 0.0012 24.2 5.4 17 113-129 80-96 (199)
362 2j32_A Caspase-3; Pro-caspase3 48.7 81 0.0028 23.7 7.7 40 43-83 39-78 (250)
363 2h3h_A Sugar ABC transporter, 48.6 84 0.0029 23.6 9.5 24 97-120 109-134 (313)
364 3sir_A Caspase; hydrolase; 2.6 48.4 60 0.002 24.7 6.9 39 44-83 43-81 (259)
365 2fz5_A Flavodoxin; alpha/beta 48.3 54 0.0018 21.4 7.6 45 42-94 12-57 (137)
366 3zyw_A Glutaredoxin-3; metal b 48.1 53 0.0018 21.2 7.3 57 84-140 15-77 (111)
367 3ctp_A Periplasmic binding pro 48.0 88 0.003 23.8 8.0 68 47-119 79-146 (330)
368 2dko_A Caspase-3; low barrier 48.0 66 0.0022 22.2 7.6 40 43-83 39-78 (146)
369 1m72_A Caspase-1; caspase, cys 48.0 91 0.0031 23.9 8.6 48 35-83 33-93 (272)
370 1yt8_A Thiosulfate sulfurtrans 47.7 15 0.00052 31.1 3.7 36 34-69 322-358 (539)
371 2wlr_A Putative thiosulfate su 47.3 17 0.00057 29.7 3.8 47 23-69 345-394 (423)
372 2h0a_A TTHA0807, transcription 47.2 24 0.00082 26.1 4.5 66 51-119 48-124 (276)
373 2nn3_C Caspase-1; cysteine pro 47.2 69 0.0024 25.2 7.2 49 34-83 60-121 (310)
374 3e96_A Dihydrodipicolinate syn 46.7 1E+02 0.0035 24.1 9.7 95 46-140 34-143 (316)
375 3mwd_B ATP-citrate synthase; A 46.6 30 0.001 27.6 5.1 52 35-86 81-133 (334)
376 1req_B Methylmalonyl-COA mutas 46.4 76 0.0026 27.7 7.9 71 47-122 527-601 (637)
377 4es6_A Uroporphyrinogen-III sy 46.2 10 0.00034 28.6 2.1 73 21-94 116-195 (254)
378 3nhv_A BH2092 protein; alpha-b 46.1 13 0.00044 25.5 2.5 37 83-119 71-109 (144)
379 2pcq_A Putative dihydrodipicol 46.0 99 0.0034 23.7 8.4 70 68-140 47-124 (283)
380 2ouc_A Dual specificity protei 45.6 8.1 0.00028 25.8 1.4 36 34-69 83-127 (142)
381 3h5d_A DHDPS, dihydrodipicolin 45.5 1.1E+02 0.0036 23.9 8.2 94 47-140 30-140 (311)
382 3gx8_A Monothiol glutaredoxin- 45.5 63 0.0021 21.3 9.3 70 68-139 1-79 (121)
383 2qv7_A Diacylglycerol kinase D 45.1 1.1E+02 0.0037 23.9 8.9 95 36-131 26-139 (337)
384 3tp9_A Beta-lactamase and rhod 44.1 9.7 0.00033 31.6 1.9 37 33-69 426-463 (474)
385 1t3k_A Arath CDC25, dual-speci 43.4 24 0.00083 24.3 3.7 38 33-70 84-131 (152)
386 2fp3_A Caspase NC; apoptosis, 42.9 53 0.0018 25.9 6.0 47 35-82 62-120 (316)
387 2bon_A Lipid kinase; DAG kinas 42.9 1.2E+02 0.004 23.7 10.1 94 36-130 31-142 (332)
388 1t5b_A Acyl carrier protein ph 42.5 85 0.0029 21.9 8.3 19 113-131 96-114 (201)
389 2qu7_A Putative transcriptiona 42.5 43 0.0015 24.9 5.3 16 95-110 108-123 (288)
390 2fsx_A RV0390, COG0607: rhodan 42.3 28 0.00097 23.7 3.9 38 83-120 79-117 (148)
391 1aba_A Glutaredoxin; electron 42.2 55 0.0019 19.7 7.4 47 43-89 13-69 (87)
392 3ber_A Probable ATP-dependent 42.1 97 0.0033 22.8 7.2 61 76-140 101-167 (249)
393 3r1i_A Short-chain type dehydr 41.8 1.1E+02 0.0037 23.0 8.0 70 22-93 46-118 (276)
394 3gr1_A Protein PRGH; type III 41.7 1.1E+02 0.0038 23.0 8.9 82 34-130 26-114 (227)
395 3d8t_A Uroporphyrinogen-III sy 40.9 43 0.0015 25.6 5.1 58 37-94 158-218 (286)
396 4f2d_A L-arabinose isomerase; 40.8 1.5E+02 0.0051 25.0 8.7 72 45-116 29-105 (500)
397 4ehd_A Caspase-3; caspase, apo 40.4 1.2E+02 0.0042 23.2 7.7 40 43-83 67-106 (277)
398 3h7a_A Short chain dehydrogena 39.8 1.1E+02 0.0038 22.5 8.2 30 35-64 8-37 (252)
399 1ycg_A Nitric oxide reductase; 39.7 96 0.0033 24.4 7.2 15 114-128 313-327 (398)
400 1qxn_A SUD, sulfide dehydrogen 39.6 26 0.0009 23.6 3.3 37 83-119 81-118 (137)
401 1wcw_A Uroporphyrinogen III sy 39.6 41 0.0014 25.1 4.7 58 37-94 133-193 (261)
402 3lop_A Substrate binding perip 39.5 1.1E+02 0.0037 23.5 7.4 96 20-117 128-229 (364)
403 1jx6_A LUXP protein; protein-l 39.5 1.2E+02 0.0042 23.0 9.1 69 46-114 62-134 (342)
404 3gr0_A Protein PRGH; type III 39.3 1.1E+02 0.0038 22.4 8.4 92 34-140 26-129 (197)
405 1yt8_A Thiosulfate sulfurtrans 39.0 22 0.00076 30.1 3.4 46 24-69 420-466 (539)
406 2pl3_A Probable ATP-dependent 38.7 96 0.0033 22.3 6.6 53 83-140 96-152 (236)
407 3imf_A Short chain dehydrogena 38.2 1.2E+02 0.004 22.3 8.7 70 22-93 20-92 (257)
408 3jvd_A Transcriptional regulat 37.7 54 0.0019 25.2 5.3 45 47-92 83-127 (333)
409 1e5d_A Rubredoxin\:oxygen oxid 37.5 1.5E+02 0.0051 23.3 11.0 50 42-94 265-314 (402)
410 3r2u_A Metallo-beta-lactamase 37.3 7.1 0.00024 32.5 0.0 38 33-70 424-462 (466)
411 1wcw_A Uroporphyrinogen III sy 37.2 1.2E+02 0.0042 22.3 7.3 57 35-94 8-69 (261)
412 3re1_A Uroporphyrinogen-III sy 37.1 1.3E+02 0.0045 22.5 7.3 59 34-94 13-76 (269)
413 2ql9_A Caspase-7; cysteine pro 37.1 1.1E+02 0.0038 21.8 7.4 40 43-83 67-106 (173)
414 1jr2_A Uroporphyrinogen-III sy 37.0 93 0.0032 23.6 6.5 54 86-140 159-216 (286)
415 2oxc_A Probable ATP-dependent 36.7 76 0.0026 22.9 5.8 52 84-140 92-148 (230)
416 3gaf_A 7-alpha-hydroxysteroid 36.2 1.3E+02 0.0044 22.2 8.7 70 22-93 26-98 (256)
417 3d02_A Putative LACI-type tran 36.0 1.3E+02 0.0045 22.2 9.5 8 57-64 60-67 (303)
418 3ucx_A Short chain dehydrogena 35.9 1.3E+02 0.0045 22.2 9.3 69 22-92 25-96 (264)
419 1pyo_A Caspase-2; apoptosis, c 35.9 98 0.0033 21.9 5.9 48 34-82 33-94 (167)
420 1kte_A Thioltransferase; redox 35.7 77 0.0026 19.5 7.8 55 34-88 11-72 (105)
421 1vm6_A DHPR, dihydrodipicolina 35.6 1.4E+02 0.0047 22.4 7.8 79 36-116 55-140 (228)
422 1rli_A Trp repressor binding p 35.4 1.1E+02 0.0037 21.1 7.8 17 113-129 81-97 (184)
423 4fo4_A Inosine 5'-monophosphat 35.4 1.7E+02 0.0059 23.4 11.0 90 49-139 61-154 (366)
424 3msz_A Glutaredoxin 1; alpha-b 35.3 69 0.0024 18.8 5.9 33 36-68 5-38 (89)
425 1jye_A Lactose operon represso 35.1 1.5E+02 0.0052 22.7 9.1 67 48-114 81-148 (349)
426 4djd_C C/Fe-SP, corrinoid/iron 35.0 2E+02 0.0067 24.0 10.3 113 6-123 177-302 (446)
427 3hut_A Putative branched-chain 34.9 1.5E+02 0.0051 22.5 8.3 108 8-117 114-227 (358)
428 1nw9_B Caspase 9, apoptosis-re 34.6 1.1E+02 0.0037 23.4 6.5 49 34-83 21-83 (277)
429 2xw6_A MGS, methylglyoxal synt 33.9 75 0.0026 21.7 4.8 47 88-141 34-81 (134)
430 2qh8_A Uncharacterized protein 33.8 1.5E+02 0.0051 22.2 8.3 29 64-92 49-77 (302)
431 3rkr_A Short chain oxidoreduct 33.5 1.4E+02 0.0049 21.9 9.5 69 23-93 44-115 (262)
432 3h8q_A Thioredoxin reductase 3 33.0 96 0.0033 19.8 7.6 54 86-139 18-75 (114)
433 2hze_A Glutaredoxin-1; thiored 33.0 95 0.0032 19.7 6.8 57 33-89 17-80 (114)
434 3mwd_B ATP-citrate synthase; A 33.0 52 0.0018 26.2 4.4 52 87-138 83-135 (334)
435 3v8b_A Putative dehydrogenase, 32.7 1.6E+02 0.0053 22.1 9.0 70 22-93 42-114 (283)
436 4es6_A Uroporphyrinogen-III sy 32.4 56 0.0019 24.3 4.5 54 86-140 135-191 (254)
437 2yvq_A Carbamoyl-phosphate syn 31.9 29 0.001 23.8 2.5 43 51-94 60-106 (143)
438 3tem_A Ribosyldihydronicotinam 31.8 1.5E+02 0.0052 21.7 7.8 19 113-131 102-120 (228)
439 3tfo_A Putative 3-oxoacyl-(acy 31.7 1.6E+02 0.0054 21.9 9.6 70 22-93 18-90 (264)
440 3qiv_A Short-chain dehydrogena 31.6 1.5E+02 0.0051 21.5 9.6 70 22-93 23-95 (253)
441 2xij_A Methylmalonyl-COA mutas 31.6 2.8E+02 0.0097 24.8 9.5 81 46-129 620-706 (762)
442 1b93_A Protein (methylglyoxal 31.5 72 0.0025 22.3 4.5 47 88-141 42-89 (152)
443 3tla_A MCCF; serine protease, 31.4 1.5E+02 0.0052 23.8 7.1 48 46-94 62-119 (371)
444 1vlj_A NADH-dependent butanol 31.2 2.1E+02 0.007 23.1 9.5 74 19-93 29-110 (407)
445 3sju_A Keto reductase; short-c 30.8 1.7E+02 0.0057 21.9 9.2 70 22-93 38-110 (279)
446 3lyl_A 3-oxoacyl-(acyl-carrier 30.8 1.5E+02 0.0052 21.4 9.3 70 22-93 19-91 (247)
447 2wul_A Glutaredoxin related pr 30.7 1.2E+02 0.004 20.1 8.7 53 22-78 11-70 (118)
448 1p9l_A Dihydrodipicolinate red 30.6 1.1E+02 0.0037 23.1 5.7 79 36-117 47-134 (245)
449 4e5s_A MCCFLIKE protein (BA_56 30.3 1.8E+02 0.0061 22.9 7.2 49 45-94 30-88 (331)
450 1okg_A Possible 3-mercaptopyru 30.2 34 0.0011 27.5 2.9 37 33-69 94-132 (373)
451 1rhs_A Sulfur-substituted rhod 29.9 24 0.00082 27.1 2.0 37 33-69 91-131 (296)
452 1f1j_A Caspase-7 protease; cas 29.8 87 0.003 24.5 5.2 47 36-83 71-131 (305)
453 3nav_A Tryptophan synthase alp 29.7 1.9E+02 0.0064 22.1 13.8 115 19-136 5-152 (271)
454 3olh_A MST, 3-mercaptopyruvate 29.1 51 0.0017 25.4 3.8 47 23-69 94-146 (302)
455 3ftp_A 3-oxoacyl-[acyl-carrier 29.1 1.8E+02 0.0061 21.6 8.7 70 22-93 42-114 (270)
456 4ibo_A Gluconate dehydrogenase 29.0 1.8E+02 0.0061 21.6 8.4 70 22-93 40-112 (271)
457 2ht9_A Glutaredoxin-2; thiored 29.0 1.4E+02 0.0047 20.3 7.2 65 21-89 39-107 (146)
458 3h7a_A Short chain dehydrogena 28.9 1.7E+02 0.0058 21.4 8.5 70 22-93 21-92 (252)
459 3gfs_A FMN-dependent NADPH-azo 28.8 83 0.0028 21.7 4.6 21 73-94 54-74 (174)
460 4h1h_A LMO1638 protein; MCCF-l 28.6 2E+02 0.0068 22.5 7.2 49 45-94 30-88 (327)
461 2wem_A Glutaredoxin-related pr 28.5 1.3E+02 0.0043 19.7 7.1 55 86-140 21-82 (118)
462 1ae1_A Tropinone reductase-I; 28.5 1.8E+02 0.0061 21.5 9.4 70 22-93 35-108 (273)
463 3sg0_A Extracellular ligand-bi 28.5 1.7E+02 0.0058 22.4 6.8 92 20-114 146-244 (386)
464 3s40_A Diacylglycerol kinase; 28.0 2E+02 0.0069 21.9 10.9 93 35-129 9-120 (304)
465 1c25_A CDC25A; hydrolase, cell 27.9 29 0.00098 23.9 1.9 32 38-69 93-136 (161)
466 3tjr_A Short chain dehydrogena 27.8 2E+02 0.0068 21.8 9.4 70 22-93 45-117 (301)
467 1u6t_A SH3 domain-binding glut 27.7 1.4E+02 0.0047 19.9 6.9 36 95-130 17-52 (121)
468 3fvw_A Putative NAD(P)H-depend 27.6 1.6E+02 0.0056 20.7 8.6 19 113-131 77-95 (192)
469 3sr3_A Microcin immunity prote 27.6 1.8E+02 0.006 23.0 6.7 48 46-94 32-89 (336)
470 1vmd_A MGS, methylglyoxal synt 27.5 97 0.0033 22.4 4.7 48 87-141 57-105 (178)
471 8tfv_A Protein (thanatin); bac 27.4 23 0.00077 15.7 0.8 11 35-45 5-15 (21)
472 3g85_A Transcriptional regulat 27.0 29 0.00099 25.9 2.0 29 89-117 107-136 (289)
473 1qle_D Cytochrome AA3, ccytoch 26.9 42 0.0014 18.3 2.0 20 63-82 3-22 (43)
474 3hjh_A Transcription-repair-co 26.3 77 0.0026 26.5 4.6 67 75-151 372-444 (483)
475 3re1_A Uroporphyrinogen-III sy 26.1 17 0.00057 27.7 0.4 59 36-94 142-203 (269)
476 3utn_X Thiosulfate sulfurtrans 26.0 42 0.0014 26.6 2.7 37 34-70 275-312 (327)
477 2qq5_A DHRS1, dehydrogenase/re 25.8 2E+02 0.0067 21.0 9.3 69 22-92 19-91 (260)
478 2z06_A Putative uncharacterize 25.3 77 0.0026 24.1 4.1 49 43-94 124-172 (252)
479 3dmn_A Putative DNA helicase; 25.1 1.7E+02 0.0059 20.2 6.5 58 33-108 60-117 (174)
480 1qb0_A Protein (M-phase induce 25.0 46 0.0016 24.2 2.7 32 38-69 115-158 (211)
481 3gr1_A Protein PRGH; type III 24.8 2.2E+02 0.0075 21.3 14.0 132 6-140 24-195 (227)
482 1zl0_A Hypothetical protein PA 24.6 1.4E+02 0.0049 23.3 5.6 49 45-94 32-90 (311)
483 1qys_A TOP7; alpha-beta, novel 24.5 1.3E+02 0.0045 18.6 4.3 37 20-56 32-69 (106)
484 3gon_A Phosphomevalonate kinas 24.4 1E+02 0.0035 23.6 4.8 28 35-62 297-324 (335)
485 3gbc_A Pyrazinamidase/nicotina 24.4 1.9E+02 0.0065 20.4 8.5 61 23-85 115-180 (186)
486 1req_A Methylmalonyl-COA mutas 24.2 3.7E+02 0.013 23.9 8.6 81 46-129 612-698 (727)
487 4evq_A Putative ABC transporte 24.2 2.4E+02 0.0081 21.5 7.7 94 21-116 139-238 (375)
488 3ipc_A ABC transporter, substr 24.1 2.3E+02 0.008 21.4 8.7 51 37-89 45-98 (356)
489 4b4t_W RPN10, 26S proteasome r 24.0 53 0.0018 25.3 2.9 37 84-120 107-148 (268)
490 2obb_A Hypothetical protein; s 24.0 90 0.0031 21.4 3.9 51 73-123 29-80 (142)
491 1vp8_A Hypothetical protein AF 24.0 2E+02 0.007 21.1 5.9 71 42-129 27-97 (201)
492 1byk_A Protein (trehalose oper 23.2 2.1E+02 0.0071 20.5 6.8 26 89-114 95-120 (255)
493 2pju_A Propionate catabolism o 23.1 2.3E+02 0.0079 20.9 11.5 81 37-129 110-191 (225)
494 1zem_A Xylitol dehydrogenase; 23.1 2.2E+02 0.0077 20.8 9.2 69 22-92 21-92 (262)
495 2wci_A Glutaredoxin-4; redox-a 23.0 1.8E+02 0.006 19.5 7.2 65 73-139 25-95 (135)
496 2ae2_A Protein (tropinone redu 22.9 2.2E+02 0.0076 20.7 9.6 70 22-93 23-96 (260)
497 4g81_D Putative hexonate dehyd 22.9 2.4E+02 0.0083 21.1 7.1 43 98-140 47-92 (255)
498 3tfo_A Putative 3-oxoacyl-(acy 22.9 2.4E+02 0.0081 20.9 7.5 82 36-119 6-92 (264)
499 1j5p_A Aspartate dehydrogenase 22.9 2.5E+02 0.0086 21.3 7.0 79 35-115 61-141 (253)
500 1t1v_A SH3BGRL3, SH3 domain-bi 22.8 1.4E+02 0.0046 18.1 6.6 54 86-139 3-65 (93)
No 1
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=99.87 E-value=1.4e-21 Score=144.15 Aligned_cols=125 Identities=14% Similarity=0.190 Sum_probs=109.0
Q ss_pred CCCCCCCCeEEEEE--EccChHHHHHHHHHhhcCCCcEEEEeccHHHHHHHHHHHHhCCCeeEEecCCCCHHHHHHHHHH
Q psy437 2 ISSFNRANLKYEIL--PKKNVLKEVISLIKAKYSGQSGIVYCLTRKECDSVAAALAQERINAISYHAGLADKLRNEVQMK 79 (184)
Q Consensus 2 ~~s~~R~Nl~y~v~--~~~~k~~~L~~~l~~~~~~~~~IIf~~tr~~~e~la~~L~~~gi~~~~~hg~l~~~~R~~~~~~ 79 (184)
.++..++||...+. +...|...|.+++... .+.++||||+|+..++.+++.|...|+++..+||+|++.+|..+++.
T Consensus 2 ~~~~~~~~i~~~~~~~~~~~K~~~L~~ll~~~-~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~~ 80 (163)
T 2hjv_A 2 AAGLTTRNIEHAVIQVREENKFSLLKDVLMTE-NPDSCIIFCRTKEHVNQLTDELDDLGYPCDKIHGGMIQEDRFDVMNE 80 (163)
T ss_dssp ----CCCCEEEEEEECCGGGHHHHHHHHHHHH-CCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHH
T ss_pred CcccCcccceEEEEECChHHHHHHHHHHHHhc-CCCcEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHH
Confidence 35678899864444 4457999999999765 67899999999999999999999999999999999999999999999
Q ss_pred HhccCceEEEEEeecccHHHHHHHHHhcCCcEEEeeCCCChHHHHHHHHHhhCCC
Q psy437 80 WISNKVHVGHWTVVSKECDSVAAALAQERINAISYHAGLADKLRNEVQMKWISNK 134 (184)
Q Consensus 80 f~~g~~~vlVaT~tr~~~e~~a~gL~~~gi~~~vih~~~p~~~r~~~~~~f~~~~ 134 (184)
|++|+.+|||+|+ .+++|+|.++++ .|+|+++|.+...|+|+..+.|.
T Consensus 81 f~~g~~~vlv~T~------~~~~Gld~~~~~-~Vi~~~~p~~~~~~~qr~GR~~R 128 (163)
T 2hjv_A 81 FKRGEYRYLVATD------VAARGIDIENIS-LVINYDLPLEKESYVHRTGRTGR 128 (163)
T ss_dssp HHTTSCSEEEECG------GGTTTCCCSCCS-EEEESSCCSSHHHHHHHTTTSSC
T ss_pred HHcCCCeEEEECC------hhhcCCchhcCC-EEEEeCCCCCHHHHHHhccccCc
Confidence 9999999999999 778899999999 99999999999999999976543
No 2
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=99.87 E-value=9.7e-22 Score=169.40 Aligned_cols=125 Identities=27% Similarity=0.501 Sum_probs=115.5
Q ss_pred CCCCCCCCeEEEEEEccChHHHHHHHHHhhcCCCcEEEEeccHHHHHHHHHHHHhCCCeeEEecCCCCHHHHHHHHHHHh
Q psy437 2 ISSFNRANLKYEILPKKNVLKEVISLIKAKYSGQSGIVYCLTRKECDSVAAALAQERINAISYHAGLADKLRNEVQMKWI 81 (184)
Q Consensus 2 ~~s~~R~Nl~y~v~~~~~k~~~L~~~l~~~~~~~~~IIf~~tr~~~e~la~~L~~~gi~~~~~hg~l~~~~R~~~~~~f~ 81 (184)
..+++|||+.|.+.+...+...|.+++.+. .+.++||||+|++.++.+++.|.+.|+.+..|||+|++++|..+++.|.
T Consensus 205 ~~~~~r~~l~~~v~~~~~~~~~l~~~l~~~-~~~~~IVf~~sr~~~e~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~ 283 (523)
T 1oyw_A 205 ISSFDRPNIRYMLMEKFKPLDQLMRYVQEQ-RGKSGIIYCNSRAKVEDTAARLQSKGISAAAYHAGLENNVRADVQEKFQ 283 (523)
T ss_dssp ECCCCCTTEEEEEEECSSHHHHHHHHHHHT-TTCCEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHH
T ss_pred eCCCCCCceEEEEEeCCCHHHHHHHHHHhc-CCCcEEEEeCCHHHHHHHHHHHHHCCCCEEEecCCCCHHHHHHHHHHHH
Confidence 468899999999999988999999999764 6779999999999999999999999999999999999999999999999
Q ss_pred ccCceEEEEEeecccHHHHHHHHHhcCCcEEEeeCCCChHHHHHHHHHhhCCC
Q psy437 82 SNKVHVGHWTVVSKECDSVAAALAQERINAISYHAGLADKLRNEVQMKWISNK 134 (184)
Q Consensus 82 ~g~~~vlVaT~tr~~~e~~a~gL~~~gi~~~vih~~~p~~~r~~~~~~f~~~~ 134 (184)
+|+.+|||||++. +.|+|.++++ .|+|+++|.+.+.|+|+..|.|.
T Consensus 284 ~g~~~vlVaT~a~------~~GiD~p~v~-~VI~~~~p~s~~~y~Qr~GRaGR 329 (523)
T 1oyw_A 284 RDDLQIVVATVAF------GMGINKPNVR-FVVHFDIPRNIESYYQETGRAGR 329 (523)
T ss_dssp TTSCSEEEECTTS------CTTTCCTTCC-EEEESSCCSSHHHHHHHHTTSCT
T ss_pred cCCCeEEEEechh------hCCCCccCcc-EEEEECCCCCHHHHHHHhccccC
Confidence 9999999999944 6699999999 99999999999999999977653
No 3
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=99.86 E-value=1.2e-21 Score=170.97 Aligned_cols=126 Identities=30% Similarity=0.546 Sum_probs=111.7
Q ss_pred CCCCCCCCeEEEEEEccC----hHHHHHHHHHhhcCCCcEEEEeccHHHHHHHHHHHHhCCCeeEEecCCCCHHHHHHHH
Q psy437 2 ISSFNRANLKYEILPKKN----VLKEVISLIKAKYSGQSGIVYCLTRKECDSVAAALAQERINAISYHAGLADKLRNEVQ 77 (184)
Q Consensus 2 ~~s~~R~Nl~y~v~~~~~----k~~~L~~~l~~~~~~~~~IIf~~tr~~~e~la~~L~~~gi~~~~~hg~l~~~~R~~~~ 77 (184)
..+++|||++|.+..... +...|.+++.+...+.++||||+|++.++.+++.|...|+.+..|||+|++++|..++
T Consensus 231 ~~~~~r~nl~~~v~~~~~~~~~~~~~l~~~l~~~~~~~~~IVf~~sr~~~e~la~~L~~~g~~~~~~h~~l~~~~R~~~~ 310 (591)
T 2v1x_A 231 TASFNRPNLYYEVRQKPSNTEDFIEDIVKLINGRYKGQSGIIYCFSQKDSEQVTVSLQNLGIHAGAYHANLEPEDKTTVH 310 (591)
T ss_dssp ECCCCCTTEEEEEEECCSSHHHHHHHHHHHHTTTTTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHH
T ss_pred ecCCCCcccEEEEEeCCCcHHHHHHHHHHHHHHhccCCCeEEEeCcHHHHHHHHHHHHHCCCCEEEecCCCCHHHHHHHH
Confidence 468999999999997653 5567777775544678999999999999999999999999999999999999999999
Q ss_pred HHHhccCceEEEEEeecccHHHHHHHHHhcCCcEEEeeCCCChHHHHHHHHHhhCCC
Q psy437 78 MKWISNKVHVGHWTVVSKECDSVAAALAQERINAISYHAGLADKLRNEVQMKWISNK 134 (184)
Q Consensus 78 ~~f~~g~~~vlVaT~tr~~~e~~a~gL~~~gi~~~vih~~~p~~~r~~~~~~f~~~~ 134 (184)
++|++|+.+|||||++. +.|+|+++++ +|||+++|.+.+.|+|+..|.|.
T Consensus 311 ~~F~~g~~~VlVAT~a~------~~GID~p~V~-~VI~~~~p~s~~~y~Qr~GRaGR 360 (591)
T 2v1x_A 311 RKWSANEIQVVVATVAF------GMGIDKPDVR-FVIHHSMSKSMENYYQESGRAGR 360 (591)
T ss_dssp HHHHTTSSSEEEECTTS------CTTCCCSCEE-EEEESSCCSSHHHHHHHHTTSCT
T ss_pred HHHHcCCCeEEEEechh------hcCCCccccc-EEEEeCCCCCHHHHHHHhccCCc
Confidence 99999999999999944 6699999999 99999999999999999977653
No 4
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=99.84 E-value=4.3e-21 Score=142.88 Aligned_cols=114 Identities=14% Similarity=0.214 Sum_probs=104.0
Q ss_pred EEEEEccChHHHHHHHHHhhcCCCcEEEEeccHHHHHHHHHHHHhCCCeeEEecCCCCHHHHHHHHHHHhccCceEEEEE
Q psy437 12 YEILPKKNVLKEVISLIKAKYSGQSGIVYCLTRKECDSVAAALAQERINAISYHAGLADKLRNEVQMKWISNKVHVGHWT 91 (184)
Q Consensus 12 y~v~~~~~k~~~L~~~l~~~~~~~~~IIf~~tr~~~e~la~~L~~~gi~~~~~hg~l~~~~R~~~~~~f~~g~~~vlVaT 91 (184)
|..++...|...|.+++... ...++||||+|+..++.++..|...|+++..+||+|++.+|..+++.|++|+.++||||
T Consensus 10 ~~~~~~~~K~~~L~~ll~~~-~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vLvaT 88 (172)
T 1t5i_A 10 YVKLKDNEKNRKLFDLLDVL-EFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVAT 88 (172)
T ss_dssp EEECCGGGHHHHHHHHHHHS-CCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEES
T ss_pred EEECChHHHHHHHHHHHHhC-CCCcEEEEECCHHHHHHHHHHHHhcCCCEEEEECCCCHHHHHHHHHHHHCCCCcEEEEC
Confidence 44455667999999999764 67899999999999999999999999999999999999999999999999999999999
Q ss_pred eecccHHHHHHHHHhcCCcEEEeeCCCChHHHHHHHHHhhCC
Q psy437 92 VVSKECDSVAAALAQERINAISYHAGLADKLRNEVQMKWISN 133 (184)
Q Consensus 92 ~tr~~~e~~a~gL~~~gi~~~vih~~~p~~~r~~~~~~f~~~ 133 (184)
+ .+++|+|.++++ .|+|+++|.+...|+|+..+.|
T Consensus 89 ~------~~~~Gldi~~~~-~Vi~~d~p~~~~~~~qr~GR~~ 123 (172)
T 1t5i_A 89 N------LFGRGMDIERVN-IAFNYDMPEDSDTYLHRVARAG 123 (172)
T ss_dssp S------CCSTTCCGGGCS-EEEESSCCSSHHHHHHHHHHHT
T ss_pred C------chhcCcchhhCC-EEEEECCCCCHHHHHHHhcccc
Confidence 9 668899999999 9999999999999999996543
No 5
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=99.84 E-value=7.1e-20 Score=135.15 Aligned_cols=115 Identities=12% Similarity=0.200 Sum_probs=95.3
Q ss_pred EEEEEEccC-hHHHHHHHHHhhcCCCcEEEEeccHHHHHHHHHHHHhCCCeeEEecCCCCHHHHHHHHHHHhccCceEEE
Q psy437 11 KYEILPKKN-VLKEVISLIKAKYSGQSGIVYCLTRKECDSVAAALAQERINAISYHAGLADKLRNEVQMKWISNKVHVGH 89 (184)
Q Consensus 11 ~y~v~~~~~-k~~~L~~~l~~~~~~~~~IIf~~tr~~~e~la~~L~~~gi~~~~~hg~l~~~~R~~~~~~f~~g~~~vlV 89 (184)
+|..++... |...|.+++... ...++||||+|++.++.++..|...|+.+..+||+|++.+|..+++.|++|+.++||
T Consensus 7 ~~~~~~~~~~K~~~l~~ll~~~-~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv 85 (165)
T 1fuk_A 7 FYVNVEEEEYKYECLTDLYDSI-SVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGSSRILI 85 (165)
T ss_dssp EEEEEESGGGHHHHHHHHHHHT-TCSCEEEEESSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCSEEE
T ss_pred EEEECCcchhHHHHHHHHHHhC-CCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHcCCCEEEE
Confidence 355556556 999999998764 778999999999999999999999999999999999999999999999999999999
Q ss_pred EEeecccHHHHHHHHHhcCCcEEEeeCCCChHHHHHHHHHhhCC
Q psy437 90 WTVVSKECDSVAAALAQERINAISYHAGLADKLRNEVQMKWISN 133 (184)
Q Consensus 90 aT~tr~~~e~~a~gL~~~gi~~~vih~~~p~~~r~~~~~~f~~~ 133 (184)
+|+ .+++|+|.++++ .|+|+++|.+..+|+|+..+.|
T Consensus 86 ~T~------~~~~G~d~~~~~-~Vi~~~~p~~~~~~~qr~GR~g 122 (165)
T 1fuk_A 86 STD------LLARGIDVQQVS-LVINYDLPANKENYIHRIGRGG 122 (165)
T ss_dssp EEG------GGTTTCCCCSCS-EEEESSCCSSGGGGGGSSCSCC
T ss_pred EcC------hhhcCCCcccCC-EEEEeCCCCCHHHHHHHhcccc
Confidence 999 556677666666 6666666666666666665443
No 6
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=99.84 E-value=2.2e-20 Score=140.64 Aligned_cols=122 Identities=17% Similarity=0.182 Sum_probs=95.0
Q ss_pred CCCCeEEEE--EEccChHHHHHHHHHhhcCCCcEEEEeccHHHHHHHHHHHHhCCCeeEEecCCCCHHHHHHHHHHHhcc
Q psy437 6 NRANLKYEI--LPKKNVLKEVISLIKAKYSGQSGIVYCLTRKECDSVAAALAQERINAISYHAGLADKLRNEVQMKWISN 83 (184)
Q Consensus 6 ~R~Nl~y~v--~~~~~k~~~L~~~l~~~~~~~~~IIf~~tr~~~e~la~~L~~~gi~~~~~hg~l~~~~R~~~~~~f~~g 83 (184)
..+||...+ ++...|...|.++|....+..++||||+|+..++.++..|...|+++..+||+|++.+|..+++.|++|
T Consensus 16 ~~~~i~q~~~~v~~~~K~~~L~~ll~~~~~~~k~lVF~~~~~~~~~l~~~L~~~g~~~~~lhg~~~~~~r~~~~~~f~~g 95 (185)
T 2jgn_A 16 TSENITQKVVWVEESDKRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSG 95 (185)
T ss_dssp CCTTEEEEEEECCGGGHHHHHHHHHHHC-CCSCEEEEESCHHHHHHHHHHHHHTTCCEEEEC--------CHHHHHHHHT
T ss_pred CCCCceEEEEEeCcHHHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHHcCCceEEEeCCCCHHHHHHHHHHHHcC
Confidence 467886444 445579999999997643567899999999999999999999999999999999999999999999999
Q ss_pred CceEEEEEeecccHHHHHHHHHhcCCcEEEeeCCCChHHHHHHHHHhhCCC
Q psy437 84 KVHVGHWTVVSKECDSVAAALAQERINAISYHAGLADKLRNEVQMKWISNK 134 (184)
Q Consensus 84 ~~~vlVaT~tr~~~e~~a~gL~~~gi~~~vih~~~p~~~r~~~~~~f~~~~ 134 (184)
+.+|||+|+ .+++|+|.++++ .|+++++|.+...|+|+..+.|.
T Consensus 96 ~~~vLvaT~------~~~~Gldi~~~~-~VI~~d~p~s~~~~~Qr~GR~~R 139 (185)
T 2jgn_A 96 KSPILVATA------VAARGLDISNVK-HVINFDLPSDIEEYVHRIGRTGR 139 (185)
T ss_dssp SSSEEEEEC------------CCCSBS-EEEESSCCSSHHHHHHHHTTBCC
T ss_pred CCeEEEEcC------hhhcCCCcccCC-EEEEeCCCCCHHHHHHHccccCC
Confidence 999999999 889999999999 99999999999999999976543
No 7
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=99.84 E-value=1.8e-20 Score=141.89 Aligned_cols=119 Identities=12% Similarity=0.154 Sum_probs=106.4
Q ss_pred CCCeEEEE--EEccChHHHHHHHHHhhcCCCcEEEEeccHHHHHHHHHHHHhCCCeeEEecCCCCHHHHHHHHHHHhccC
Q psy437 7 RANLKYEI--LPKKNVLKEVISLIKAKYSGQSGIVYCLTRKECDSVAAALAQERINAISYHAGLADKLRNEVQMKWISNK 84 (184)
Q Consensus 7 R~Nl~y~v--~~~~~k~~~L~~~l~~~~~~~~~IIf~~tr~~~e~la~~L~~~gi~~~~~hg~l~~~~R~~~~~~f~~g~ 84 (184)
.+|+...+ ++...|...|.++|.+ .+.++||||+|+..++.+++.|...|+++..+||+|++.+|..+++.|++|+
T Consensus 27 ~~~i~q~~~~~~~~~K~~~L~~~l~~--~~~~~lVF~~~~~~~~~l~~~L~~~g~~~~~lhg~~~~~~R~~~l~~F~~g~ 104 (191)
T 2p6n_A 27 SLDVIQEVEYVKEEAKMVYLLECLQK--TPPPVLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEAFREGK 104 (191)
T ss_dssp -CCSEEEEEECCGGGHHHHHHHHHTT--SCSCEEEECSCHHHHHHHHHHHHHHTCCEEEECTTSCHHHHHHHHHHHHHTS
T ss_pred CcCceEEEEEcChHHHHHHHHHHHHh--CCCCEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCC
Confidence 46665443 3455799999998865 4568999999999999999999999999999999999999999999999999
Q ss_pred ceEEEEEeecccHHHHHHHHHhcCCcEEEeeCCCChHHHHHHHHHhhCCC
Q psy437 85 VHVGHWTVVSKECDSVAAALAQERINAISYHAGLADKLRNEVQMKWISNK 134 (184)
Q Consensus 85 ~~vlVaT~tr~~~e~~a~gL~~~gi~~~vih~~~p~~~r~~~~~~f~~~~ 134 (184)
.+|||+|+ .+++|+|.++++ .|+|+++|.+...|+|+..+.|.
T Consensus 105 ~~vLvaT~------~~~~Gldi~~v~-~VI~~d~p~~~~~~~qr~GR~gR 147 (191)
T 2p6n_A 105 KDVLVATD------VASKGLDFPAIQ-HVINYDMPEEIENYVHRIGRTGC 147 (191)
T ss_dssp CSEEEECH------HHHTTCCCCCCS-EEEESSCCSSHHHHHHHHTTSCC
T ss_pred CEEEEEcC------chhcCCCcccCC-EEEEeCCCCCHHHHHHHhCcccc
Confidence 99999999 889999999999 99999999999999999987664
No 8
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=99.83 E-value=2.1e-20 Score=143.62 Aligned_cols=113 Identities=19% Similarity=0.199 Sum_probs=104.0
Q ss_pred EEEccChHHHHHHHHHhhcCCCcEEEEeccHHHHHHHHHHHHhCCCeeEEecCCCCHHHHHHHHHHHhccCceEEEEEee
Q psy437 14 ILPKKNVLKEVISLIKAKYSGQSGIVYCLTRKECDSVAAALAQERINAISYHAGLADKLRNEVQMKWISNKVHVGHWTVV 93 (184)
Q Consensus 14 v~~~~~k~~~L~~~l~~~~~~~~~IIf~~tr~~~e~la~~L~~~gi~~~~~hg~l~~~~R~~~~~~f~~g~~~vlVaT~t 93 (184)
..+...|+..|.+++... .+.++||||+|+..++.+++.|...|+.+..+||+|++.+|..+++.|++|+.+|||||+
T Consensus 12 ~~~~~~k~~~l~~ll~~~-~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vlvaT~- 89 (212)
T 3eaq_A 12 PAPVRGRLEVLSDLLYVA-SPDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDLSQGERERVLGAFRQGEVRVLVATD- 89 (212)
T ss_dssp ECCTTSHHHHHHHHHHHH-CCSCEEEECSSHHHHHHHHHHHHHHTCCEEEECSSSCHHHHHHHHHHHHSSSCCEEEECT-
T ss_pred eCCHHHHHHHHHHHHHhC-CCCeEEEEeCCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHCCCCeEEEecC-
Confidence 344567999999999764 778999999999999999999999999999999999999999999999999999999999
Q ss_pred cccHHHHHHHHHhcCCcEEEeeCCCChHHHHHHHHHhhCCC
Q psy437 94 SKECDSVAAALAQERINAISYHAGLADKLRNEVQMKWISNK 134 (184)
Q Consensus 94 r~~~e~~a~gL~~~gi~~~vih~~~p~~~r~~~~~~f~~~~ 134 (184)
.+++|+|.++++ +|+|+|+|.+...|+|+.++.|.
T Consensus 90 -----~~~~Gidi~~v~-~Vi~~~~p~~~~~~~qr~GR~gR 124 (212)
T 3eaq_A 90 -----VAARGLDIPQVD-LVVHYRLPDRAEAYQHRSGRTGR 124 (212)
T ss_dssp -----TTTCSSSCCCBS-EEEESSCCSSHHHHHHHHTTBCC
T ss_pred -----hhhcCCCCccCc-EEEECCCCcCHHHHHHHhcccCC
Confidence 778999999999 99999999999999999977653
No 9
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=99.82 E-value=4.6e-20 Score=137.40 Aligned_cols=119 Identities=12% Similarity=0.161 Sum_probs=103.6
Q ss_pred CCeEEEEE--EccC-hHHHHHHHHHhhcCCCcEEEEeccHHHHHHHHHHHHhCCCeeEEecCCCCHHHHHHHHHHHhccC
Q psy437 8 ANLKYEIL--PKKN-VLKEVISLIKAKYSGQSGIVYCLTRKECDSVAAALAQERINAISYHAGLADKLRNEVQMKWISNK 84 (184)
Q Consensus 8 ~Nl~y~v~--~~~~-k~~~L~~~l~~~~~~~~~IIf~~tr~~~e~la~~L~~~gi~~~~~hg~l~~~~R~~~~~~f~~g~ 84 (184)
+||...+. +... |...|.+++... ...++||||+|+..++.++..|...|+.+..+||+|++.+|..+++.|++|+
T Consensus 6 ~~i~q~~~~~~~~~~K~~~L~~ll~~~-~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~R~~~~~~f~~g~ 84 (175)
T 2rb4_A 6 NNIRQYYVLCEHRKDKYQALCNIYGSI-TIGQAIIFCQTRRNAKWLTVEMIQDGHQVSLLSGELTVEQRASIIQRFRDGK 84 (175)
T ss_dssp CCEEEEEEECSSHHHHHHHHHHHHTTS-CCSEEEEECSCHHHHHHHHHHHHTTTCCEEEECSSCCHHHHHHHHHHHHTTS
T ss_pred CCceEEEEEcCChHhHHHHHHHHHHhC-CCCCEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHHcCC
Confidence 46653333 3333 889999888653 6778999999999999999999999999999999999999999999999999
Q ss_pred ceEEEEEeecccHHHHHHHHHhcCCcEEEeeCCCC------hHHHHHHHHHhhCCC
Q psy437 85 VHVGHWTVVSKECDSVAAALAQERINAISYHAGLA------DKLRNEVQMKWISNK 134 (184)
Q Consensus 85 ~~vlVaT~tr~~~e~~a~gL~~~gi~~~vih~~~p------~~~r~~~~~~f~~~~ 134 (184)
.++||||+ .+++|+|.++++ .|+|+++| .+..+|+|+.++.|.
T Consensus 85 ~~vLvaT~------~~~~Gid~~~~~-~Vi~~d~p~~~~~~~~~~~~~qr~GR~gR 133 (175)
T 2rb4_A 85 EKVLITTN------VCARGIDVKQVT-IVVNFDLPVKQGEEPDYETYLHRIGRTGR 133 (175)
T ss_dssp CSEEEECC------SCCTTTCCTTEE-EEEESSCCC--CCSCCHHHHHHHHCBC--
T ss_pred CeEEEEec------chhcCCCcccCC-EEEEeCCCCCccccCCHHHHHHHhccccc
Confidence 99999999 668899999999 99999999 999999999977654
No 10
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=99.81 E-value=9.8e-20 Score=146.86 Aligned_cols=115 Identities=17% Similarity=0.179 Sum_probs=105.0
Q ss_pred EEEEEccChHHHHHHHHHhhcCCCcEEEEeccHHHHHHHHHHHHhCCCeeEEecCCCCHHHHHHHHHHHhccCceEEEEE
Q psy437 12 YEILPKKNVLKEVISLIKAKYSGQSGIVYCLTRKECDSVAAALAQERINAISYHAGLADKLRNEVQMKWISNKVHVGHWT 91 (184)
Q Consensus 12 y~v~~~~~k~~~L~~~l~~~~~~~~~IIf~~tr~~~e~la~~L~~~gi~~~~~hg~l~~~~R~~~~~~f~~g~~~vlVaT 91 (184)
|..++...|+..|.+++... .+.++||||+|+..++.++..|...|+.+..+||+|++.+|..+++.|++|+.+|||||
T Consensus 7 ~i~~~~~~K~~~L~~ll~~~-~~~~~LVF~~t~~~~~~l~~~L~~~g~~~~~lhg~l~~~~r~~~~~~f~~g~~~vLVaT 85 (300)
T 3i32_A 7 AVPAPVRGRLEVLSDLLYVA-SPDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDMSQGERERVMGAFRQGEVRVLVAT 85 (300)
T ss_dssp EEECCSSSHHHHHHHHHHHH-CCSSEEEECSSHHHHHHHHHHHHTTTCCEEEECSCCCTHHHHHHHHHHHHTSCCEEEEC
T ss_pred EEECCHHHHHHHHHHHHHhc-CCCCEEEEECCHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHhhcCCceEEEEe
Confidence 44445567999999999765 68899999999999999999999999999999999999999999999999999999999
Q ss_pred eecccHHHHHHHHHhcCCcEEEeeCCCChHHHHHHHHHhhCCC
Q psy437 92 VVSKECDSVAAALAQERINAISYHAGLADKLRNEVQMKWISNK 134 (184)
Q Consensus 92 ~tr~~~e~~a~gL~~~gi~~~vih~~~p~~~r~~~~~~f~~~~ 134 (184)
+ .+++|+|.++++ +|||+|+|.+...|+|+.++.|.
T Consensus 86 ~------va~~Gidi~~v~-~VI~~d~p~s~~~y~Qr~GRagR 121 (300)
T 3i32_A 86 D------VAARGLDIPQVD-LVVHYRMPDRAEAYQHRSGRTGR 121 (300)
T ss_dssp S------TTTCSTTCCCCS-EEEESSCCSSTTHHHHHHTCCC-
T ss_pred c------hhhcCcccccee-EEEEcCCCCCHHHHHHHccCcCc
Confidence 9 778999999999 99999999999999999977653
No 11
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=99.68 E-value=4e-21 Score=142.61 Aligned_cols=119 Identities=14% Similarity=0.125 Sum_probs=105.8
Q ss_pred CCCeEEE--EEEc-cChHHHHHHHHHhhcCCCcEEEEeccHHHHHHHHHHHHhCCCeeEEecCCCCHHHHHHHHHHHhcc
Q psy437 7 RANLKYE--ILPK-KNVLKEVISLIKAKYSGQSGIVYCLTRKECDSVAAALAQERINAISYHAGLADKLRNEVQMKWISN 83 (184)
Q Consensus 7 R~Nl~y~--v~~~-~~k~~~L~~~l~~~~~~~~~IIf~~tr~~~e~la~~L~~~gi~~~~~hg~l~~~~R~~~~~~f~~g 83 (184)
|+||.+. .++. ..|...|.+++... .+.++||||+|+..++.+++.|...|+.+..+||+|++.+|..+++.|++|
T Consensus 1 R~~i~~~~~~~~~~~~k~~~l~~ll~~~-~~~~~iVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~~f~~g 79 (170)
T 2yjt_D 1 RKKIHQWYYRADDLEHKTALLVHLLKQP-EATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEG 79 (170)
Confidence 6677533 3344 56889998888653 667899999999999999999999999999999999999999999999999
Q ss_pred CceEEEEEeecccHHHHHHHHHhcCCcEEEeeCCCChHHHHHHHHHhhCC
Q psy437 84 KVHVGHWTVVSKECDSVAAALAQERINAISYHAGLADKLRNEVQMKWISN 133 (184)
Q Consensus 84 ~~~vlVaT~tr~~~e~~a~gL~~~gi~~~vih~~~p~~~r~~~~~~f~~~ 133 (184)
+.++||||+ .+++|+|.++++ .|+|+++|.+...|+|+..+.|
T Consensus 80 ~~~vLvaT~------~~~~Gid~~~~~-~Vi~~~~p~~~~~~~qr~GR~~ 122 (170)
T 2yjt_D 80 RVNVLVATD------VAARGIDIPDVS-HVFNFDMPRSGDTYLHRIGRTA 122 (170)
Confidence 999999999 889999999999 9999999999999999996643
No 12
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=99.77 E-value=1.5e-18 Score=146.06 Aligned_cols=110 Identities=15% Similarity=0.185 Sum_probs=100.8
Q ss_pred EccChHHHHHHHHHhhcCCCcEEEEeccHHHHHHHHHHHHhCCCeeEEecCCCCHHHHHHHHHHHhccCceEEEEEeecc
Q psy437 16 PKKNVLKEVISLIKAKYSGQSGIVYCLTRKECDSVAAALAQERINAISYHAGLADKLRNEVQMKWISNKVHVGHWTVVSK 95 (184)
Q Consensus 16 ~~~~k~~~L~~~l~~~~~~~~~IIf~~tr~~~e~la~~L~~~gi~~~~~hg~l~~~~R~~~~~~f~~g~~~vlVaT~tr~ 95 (184)
....|...|.+++.+ ...++||||+|++.|+.+++.|.+.|+++..+||++++.+|..++++|++|+.+|||||+
T Consensus 284 ~~~~k~~~l~~~l~~--~~~~~lVF~~t~~~a~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT~--- 358 (434)
T 2db3_A 284 NKYAKRSKLIEILSE--QADGTIVFVETKRGADFLASFLSEKEFPTTSIHGDRLQSQREQALRDFKNGSMKVLIATS--- 358 (434)
T ss_dssp CGGGHHHHHHHHHHH--CCTTEEEECSSHHHHHHHHHHHHHTTCCEEEESTTSCHHHHHHHHHHHHTSSCSEEEECG---
T ss_pred CcHHHHHHHHHHHHh--CCCCEEEEEeCcHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEch---
Confidence 344688899998876 345599999999999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHhcCCcEEEeeCCCChHHHHHHHHHhhCCC
Q psy437 96 ECDSVAAALAQERINAISYHAGLADKLRNEVQMKWISNK 134 (184)
Q Consensus 96 ~~e~~a~gL~~~gi~~~vih~~~p~~~r~~~~~~f~~~~ 134 (184)
.+++|||.++++ +|+|+|+|.+..+|+||..|.|.
T Consensus 359 ---v~~rGlDi~~v~-~VI~~d~p~~~~~y~qriGR~gR 393 (434)
T 2db3_A 359 ---VASRGLDIKNIK-HVINYDMPSKIDDYVHRIGRTGR 393 (434)
T ss_dssp ---GGTSSCCCTTCC-EEEESSCCSSHHHHHHHHTTSSC
T ss_pred ---hhhCCCCcccCC-EEEEECCCCCHHHHHHHhccccc
Confidence 789999999999 99999999999999999987654
No 13
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=99.75 E-value=2e-17 Score=144.44 Aligned_cols=86 Identities=24% Similarity=0.347 Sum_probs=78.7
Q ss_pred EEEEeecccHHHHHHHHHhcCCcEEEeeCCCChHHHHHHHHHhhCCCceEEEE-------EecCCccEEEecCCCCCccc
Q psy437 88 GHWTVVSKECDSVAAALAQERINAISYHAGLADKLRNEVQMKWISNKVHLYNV-------WKIQWKRIIWIHSLVLIKPD 160 (184)
Q Consensus 88 lVaT~tr~~~e~~a~gL~~~gi~~~vih~~~p~~~r~~~~~~f~~~~~~v~va-------~D~~~vr~v~~~~~p~~~e~ 160 (184)
||++++++.|+.++..|...|+.+..||+++++..|..+++.|++|++.|+|| +|+|+|++|||+++|++.++
T Consensus 271 IVf~~sr~~~e~la~~L~~~g~~~~~~h~~l~~~~R~~~~~~F~~g~~~VlVAT~a~~~GID~p~V~~VI~~~~p~s~~~ 350 (591)
T 2v1x_A 271 IIYCFSQKDSEQVTVSLQNLGIHAGAYHANLEPEDKTTVHRKWSANEIQVVVATVAFGMGIDKPDVRFVIHHSMSKSMEN 350 (591)
T ss_dssp EEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEECTTSCTTCCCSCEEEEEESSCCSSHHH
T ss_pred EEEeCcHHHHHHHHHHHHHCCCCEEEecCCCCHHHHHHHHHHHHcCCCeEEEEechhhcCCCcccccEEEEeCCCCCHHH
Confidence 55555557899999999999999999999999999999999999999999999 69999999999999999999
Q ss_pred cccccccccCCcccc
Q psy437 161 YLPPILDLRLGREDI 175 (184)
Q Consensus 161 y~~~i~~~~~~r~~~ 175 (184)
|+|++ +|+||++.
T Consensus 351 y~Qr~--GRaGR~G~ 363 (591)
T 2v1x_A 351 YYQES--GRAGRDDM 363 (591)
T ss_dssp HHHHH--TTSCTTSS
T ss_pred HHHHh--ccCCcCCC
Confidence 99999 58888653
No 14
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=99.74 E-value=4.7e-17 Score=140.18 Aligned_cols=140 Identities=17% Similarity=0.194 Sum_probs=121.5
Q ss_pred CCCcEEEEeccHHHHHHHHHHHHhCCCeeEEecCCCCHHHHHHHHHHHhccCceE-------------------------
Q psy437 33 SGQSGIVYCLTRKECDSVAAALAQERINAISYHAGLADKLRNEVQMKWISNKVHV------------------------- 87 (184)
Q Consensus 33 ~~~~~IIf~~tr~~~e~la~~L~~~gi~~~~~hg~l~~~~R~~~~~~f~~g~~~v------------------------- 87 (184)
..+.+||.+|++..+.+....|...|+++..++|+.+..++......+..|..++
T Consensus 64 ~~g~~lvi~P~~aL~~q~~~~l~~~gi~~~~l~~~~~~~~~~~~~~~~~~~~~~ilv~Tpe~l~~~~~~~~l~~~~~~~v 143 (523)
T 1oyw_A 64 LNGLTVVVSPLISLMKDQVDQLQANGVAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAPERLMLDNFLEHLAHWNPVLL 143 (523)
T ss_dssp SSSEEEEECSCHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHHTCCSEEEECHHHHTSTTHHHHHTTSCEEEE
T ss_pred hCCCEEEECChHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhChHHHHHHhhCCCCEE
Confidence 3468999999999999999999999999999999888766655555444444444
Q ss_pred --------------------------------------------------------------------------------
Q psy437 88 -------------------------------------------------------------------------------- 87 (184)
Q Consensus 88 -------------------------------------------------------------------------------- 87 (184)
T Consensus 144 ViDEaH~i~~~g~~fr~~~~~l~~l~~~~~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~r~~l~~~v~~~~~~ 223 (523)
T 1oyw_A 144 AVDEAHCISQWGHDFRPEYAALGQLRQRFPTLPFMALTATADDTTRQDIVRLLGLNDPLIQISSFDRPNIRYMLMEKFKP 223 (523)
T ss_dssp EESSGGGGCTTSSCCCHHHHGGGGHHHHCTTSCEEEEESCCCHHHHHHHHHHHTCCSCEEEECCCCCTTEEEEEEECSSH
T ss_pred EEeCccccCcCCCccHHHHHHHHHHHHhCCCCCEEEEeCCCCHHHHHHHHHHhCCCCCeEEeCCCCCCceEEEEEeCCCH
Confidence
Q ss_pred ----------------EEEEeecccHHHHHHHHHhcCCcEEEeeCCCChHHHHHHHHHhhCCCceEEEE-------EecC
Q psy437 88 ----------------GHWTVVSKECDSVAAALAQERINAISYHAGLADKLRNEVQMKWISNKVHLYNV-------WKIQ 144 (184)
Q Consensus 88 ----------------lVaT~tr~~~e~~a~gL~~~gi~~~vih~~~p~~~r~~~~~~f~~~~~~v~va-------~D~~ 144 (184)
||+|++++.|+.++..|...|+++..||+++++..|..+++.|++|++.|+|| +|+|
T Consensus 224 ~~~l~~~l~~~~~~~~IVf~~sr~~~e~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vlVaT~a~~~GiD~p 303 (523)
T 1oyw_A 224 LDQLMRYVQEQRGKSGIIYCNSRAKVEDTAARLQSKGISAAAYHAGLENNVRADVQEKFQRDDLQIVVATVAFGMGINKP 303 (523)
T ss_dssp HHHHHHHHHHTTTCCEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEECTTSCTTTCCT
T ss_pred HHHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHHCCCCEEEecCCCCHHHHHHHHHHHHcCCCeEEEEechhhCCCCcc
Confidence 55555557899999999999999999999999999999999999999999999 5999
Q ss_pred CccEEEecCCCCCccccccccccccCCccc
Q psy437 145 WKRIIWIHSLVLIKPDYLPPILDLRLGRED 174 (184)
Q Consensus 145 ~vr~v~~~~~p~~~e~y~~~i~~~~~~r~~ 174 (184)
++++|||+++|++.++|+|++ +|+||++
T Consensus 304 ~v~~VI~~~~p~s~~~y~Qr~--GRaGR~g 331 (523)
T 1oyw_A 304 NVRFVVHFDIPRNIESYYQET--GRAGRDG 331 (523)
T ss_dssp TCCEEEESSCCSSHHHHHHHH--TTSCTTS
T ss_pred CccEEEEECCCCCHHHHHHHh--ccccCCC
Confidence 999999999999999999999 5888864
No 15
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=99.73 E-value=3.3e-17 Score=135.92 Aligned_cols=122 Identities=17% Similarity=0.169 Sum_probs=107.6
Q ss_pred CCCCeEEEEEE--ccChHHHHHHHHHhhcCCCcEEEEeccHHHHHHHHHHHHhCCCeeEEecCCCCHHHHHHHHHHHhcc
Q psy437 6 NRANLKYEILP--KKNVLKEVISLIKAKYSGQSGIVYCLTRKECDSVAAALAQERINAISYHAGLADKLRNEVQMKWISN 83 (184)
Q Consensus 6 ~R~Nl~y~v~~--~~~k~~~L~~~l~~~~~~~~~IIf~~tr~~~e~la~~L~~~gi~~~~~hg~l~~~~R~~~~~~f~~g 83 (184)
..+|+.+.+.. ...+...|.+++.......++||||+|++.++.+++.|.+.|+.+..+||++++++|..++++|++|
T Consensus 246 ~~~~i~~~~~~~~~~~~~~~l~~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g 325 (417)
T 2i4i_A 246 TSENITQKVVWVEESDKRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSG 325 (417)
T ss_dssp CCSSEEEEEEECCGGGHHHHHHHHHHTCCTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHHT
T ss_pred CccCceEEEEEeccHhHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHHCCCCeeEecCCCCHHHHHHHHHHHHcC
Confidence 35566544443 3458888888887643567899999999999999999999999999999999999999999999999
Q ss_pred CceEEEEEeecccHHHHHHHHHhcCCcEEEeeCCCChHHHHHHHHHhhCCC
Q psy437 84 KVHVGHWTVVSKECDSVAAALAQERINAISYHAGLADKLRNEVQMKWISNK 134 (184)
Q Consensus 84 ~~~vlVaT~tr~~~e~~a~gL~~~gi~~~vih~~~p~~~r~~~~~~f~~~~ 134 (184)
+.+|||||+ .+++|+|.++++ +|+|+++|.+...|+|+..|.|.
T Consensus 326 ~~~vlvaT~------~~~~Gidip~v~-~Vi~~~~p~s~~~~~Qr~GR~gR 369 (417)
T 2i4i_A 326 KSPILVATA------VAARGLDISNVK-HVINFDLPSDIEEYVHRIGRTGR 369 (417)
T ss_dssp SSCEEEECH------HHHTTSCCCCEE-EEEESSCCSSHHHHHHHHTTBCC
T ss_pred CCCEEEECC------hhhcCCCcccCC-EEEEEcCCCCHHHHHHhcCcccc
Confidence 999999999 889999999999 99999999999999999987654
No 16
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=99.69 E-value=9.1e-17 Score=133.23 Aligned_cols=106 Identities=14% Similarity=0.181 Sum_probs=98.6
Q ss_pred hHHHHHHHHHhhcCCCcEEEEeccHHHHHHHHHHHHhCCCeeEEecCCCCHHHHHHHHHHHhccCceEEEEEeecccHHH
Q psy437 20 VLKEVISLIKAKYSGQSGIVYCLTRKECDSVAAALAQERINAISYHAGLADKLRNEVQMKWISNKVHVGHWTVVSKECDS 99 (184)
Q Consensus 20 k~~~L~~~l~~~~~~~~~IIf~~tr~~~e~la~~L~~~gi~~~~~hg~l~~~~R~~~~~~f~~g~~~vlVaT~tr~~~e~ 99 (184)
|...|.+++... ...++||||+|++.++.+++.|.+.|+.+..+||++++++|..+++.|++|+.+|||+|+ .
T Consensus 263 k~~~l~~~~~~~-~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~------~ 335 (410)
T 2j0s_A 263 KFDTLCDLYDTL-TITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTD------V 335 (410)
T ss_dssp HHHHHHHHHHHH-TSSEEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHHTSSCEEEECG------G
T ss_pred HHHHHHHHHHhc-CCCcEEEEEcCHHHHHHHHHHHHhCCCceEEeeCCCCHHHHHHHHHHHHCCCCCEEEECC------h
Confidence 788888888664 667999999999999999999999999999999999999999999999999999999999 7
Q ss_pred HHHHHHhcCCcEEEeeCCCChHHHHHHHHHhhCC
Q psy437 100 VAAALAQERINAISYHAGLADKLRNEVQMKWISN 133 (184)
Q Consensus 100 ~a~gL~~~gi~~~vih~~~p~~~r~~~~~~f~~~ 133 (184)
+++|+|.++++ +|+|+++|.+...|+|+..|.|
T Consensus 336 ~~~Gidi~~v~-~Vi~~~~p~s~~~~~Qr~GR~g 368 (410)
T 2j0s_A 336 WARGLDVPQVS-LIINYDLPNNRELYIHRIGRSG 368 (410)
T ss_dssp GSSSCCCTTEE-EEEESSCCSSHHHHHHHHTTSS
T ss_pred hhCcCCcccCC-EEEEECCCCCHHHHHHhccccc
Confidence 78899999999 9999999999999999997654
No 17
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=99.68 E-value=7e-17 Score=139.47 Aligned_cols=104 Identities=14% Similarity=0.186 Sum_probs=92.6
Q ss_pred HHHHHHHhhcCCCcEEEEeccHHHHHHHHHHHHhC---CCeeEEecCCCCHHHHHHHHHHHhccCceEEEEEeecccHHH
Q psy437 23 EVISLIKAKYSGQSGIVYCLTRKECDSVAAALAQE---RINAISYHAGLADKLRNEVQMKWISNKVHVGHWTVVSKECDS 99 (184)
Q Consensus 23 ~L~~~l~~~~~~~~~IIf~~tr~~~e~la~~L~~~---gi~~~~~hg~l~~~~R~~~~~~f~~g~~~vlVaT~tr~~~e~ 99 (184)
.+...+.......++||||+|+..|+.++..|.+. ++++..+||+|++.+|..+++.|++|+.+|||||+ .
T Consensus 328 ~l~~~~~~~~~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vLvaT~------~ 401 (563)
T 3i5x_A 328 HIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRFKKDESGILVCTD------V 401 (563)
T ss_dssp HHHHHHHHTTTCCEEEEECSCHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEECG------G
T ss_pred HHHHHHhhcCCCCcEEEEcCcHHHHHHHHHHHHHhccCCceEEEecCCCCHHHHHHHHHHHhcCCCCEEEEcc------h
Confidence 33344433235778999999999999999999876 99999999999999999999999999999999999 7
Q ss_pred HHHHHHhcCCcEEEeeCCCChHHHHHHHHHhhCC
Q psy437 100 VAAALAQERINAISYHAGLADKLRNEVQMKWISN 133 (184)
Q Consensus 100 ~a~gL~~~gi~~~vih~~~p~~~r~~~~~~f~~~ 133 (184)
+++|+|.++++ +|||+++|.+...|+|+..|.|
T Consensus 402 ~~~GiDip~v~-~VI~~~~p~s~~~y~Qr~GRag 434 (563)
T 3i5x_A 402 GARGMDFPNVH-EVLQIGVPSELANYIHRIGRTA 434 (563)
T ss_dssp GTSSCCCTTCC-EEEEESCCSSTTHHHHHHTTSS
T ss_pred hhcCCCcccCC-EEEEECCCCchhhhhhhcCccc
Confidence 78999999999 9999999999999999997754
No 18
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=99.68 E-value=2.8e-16 Score=129.87 Aligned_cols=108 Identities=17% Similarity=0.172 Sum_probs=98.4
Q ss_pred ChHHHHHHHHHhhcCCCcEEEEeccHHHHHHHHHHHHhCCCeeEEecCCCCHHHHHHHHHHHhccCceEEEEEeecccHH
Q psy437 19 NVLKEVISLIKAKYSGQSGIVYCLTRKECDSVAAALAQERINAISYHAGLADKLRNEVQMKWISNKVHVGHWTVVSKECD 98 (184)
Q Consensus 19 ~k~~~L~~~l~~~~~~~~~IIf~~tr~~~e~la~~L~~~gi~~~~~hg~l~~~~R~~~~~~f~~g~~~vlVaT~tr~~~e 98 (184)
.+...+..++... ...++||||+|++.++.++..|.+.++.+..+||+|++++|..+++.|++|+.+|||||+
T Consensus 252 ~~~~~l~~~~~~~-~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~------ 324 (412)
T 3fht_A 252 EKFQALCNLYGAI-TIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTN------ 324 (412)
T ss_dssp HHHHHHHHHHHHH-SSSEEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHTTSCSEEEECG------
T ss_pred HHHHHHHHHHhhc-CCCCEEEEeCCHHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHHHCCCCcEEEEcC------
Confidence 4777788877654 678999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCcEEEeeCCCC------hHHHHHHHHHhhCCC
Q psy437 99 SVAAALAQERINAISYHAGLA------DKLRNEVQMKWISNK 134 (184)
Q Consensus 99 ~~a~gL~~~gi~~~vih~~~p------~~~r~~~~~~f~~~~ 134 (184)
.+++|+|.++++ +|+|+++| .+...|+|+.+|.|.
T Consensus 325 ~~~~Gidip~~~-~Vi~~~~p~~~~~~~s~~~~~Qr~GR~gR 365 (412)
T 3fht_A 325 VCARGIDVEQVS-VVINFDLPVDKDGNPDNETYLHRIGRTGR 365 (412)
T ss_dssp GGTSSCCCTTEE-EEEESSCCBCSSSSBCHHHHHHHHTTSSC
T ss_pred ccccCCCccCCC-EEEEECCCCCCCCCcchheeecccCcccC
Confidence 778899999999 99999999 678999999977654
No 19
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=99.67 E-value=3.9e-16 Score=126.87 Aligned_cols=110 Identities=15% Similarity=0.224 Sum_probs=100.8
Q ss_pred EccChHHHHHHHHHhhcCCCcEEEEeccHHHHHHHHHHHHhCCCeeEEecCCCCHHHHHHHHHHHhccCceEEEEEeecc
Q psy437 16 PKKNVLKEVISLIKAKYSGQSGIVYCLTRKECDSVAAALAQERINAISYHAGLADKLRNEVQMKWISNKVHVGHWTVVSK 95 (184)
Q Consensus 16 ~~~~k~~~L~~~l~~~~~~~~~IIf~~tr~~~e~la~~L~~~gi~~~~~hg~l~~~~R~~~~~~f~~g~~~vlVaT~tr~ 95 (184)
....+...|.+++.. .+.++||||+|++.++.+++.|.+.|+.+..+||++++++|..+++.|.+|+.+|||+|+
T Consensus 222 ~~~~~~~~l~~~l~~--~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~--- 296 (367)
T 1hv8_A 222 NENERFEALCRLLKN--KEFYGLVFCKTKRDTKELASMLRDIGFKAGAIHGDLSQSQREKVIRLFKQKKIRILIATD--- 296 (367)
T ss_dssp CGGGHHHHHHHHHCS--TTCCEEEECSSHHHHHHHHHHHHHTTCCEEEECSSSCHHHHHHHHHHHHTTSSSEEEECT---
T ss_pred ChHHHHHHHHHHHhc--CCCcEEEEECCHHHHHHHHHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHcCCCeEEEECC---
Confidence 344688888888854 677899999999999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHhcCCcEEEeeCCCChHHHHHHHHHhhCCC
Q psy437 96 ECDSVAAALAQERINAISYHAGLADKLRNEVQMKWISNK 134 (184)
Q Consensus 96 ~~e~~a~gL~~~gi~~~vih~~~p~~~r~~~~~~f~~~~ 134 (184)
.+++|+|.++++ .|+|+++|.+..+|+|+..|.|.
T Consensus 297 ---~~~~Gid~~~~~-~Vi~~~~~~s~~~~~Q~~GR~~R 331 (367)
T 1hv8_A 297 ---VMSRGIDVNDLN-CVINYHLPQNPESYMHRIGRTGR 331 (367)
T ss_dssp ---THHHHCCCSCCS-EEEESSCCSCHHHHHHHSTTTCC
T ss_pred ---hhhcCCCcccCC-EEEEecCCCCHHHhhhccccccc
Confidence 889999999999 99999999999999999976543
No 20
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=99.67 E-value=9.3e-17 Score=139.58 Aligned_cols=104 Identities=14% Similarity=0.186 Sum_probs=92.5
Q ss_pred HHHHHHHhhcCCCcEEEEeccHHHHHHHHHHHHhC---CCeeEEecCCCCHHHHHHHHHHHhccCceEEEEEeecccHHH
Q psy437 23 EVISLIKAKYSGQSGIVYCLTRKECDSVAAALAQE---RINAISYHAGLADKLRNEVQMKWISNKVHVGHWTVVSKECDS 99 (184)
Q Consensus 23 ~L~~~l~~~~~~~~~IIf~~tr~~~e~la~~L~~~---gi~~~~~hg~l~~~~R~~~~~~f~~g~~~vlVaT~tr~~~e~ 99 (184)
.+...+.......++||||+|+..|+.+++.|.+. ++.+..+||+|++++|..++++|++|+.+|||||+ .
T Consensus 277 ~l~~~~~~~~~~~~~iVF~~t~~~~~~l~~~L~~~~~~~~~v~~~hg~~~~~~R~~~~~~F~~g~~~vLVaT~------~ 350 (579)
T 3sqw_A 277 HIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRFKKDESGILVCTD------V 350 (579)
T ss_dssp HHHHHHHHTTTCCEEEEECSSHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEECG------G
T ss_pred HHHHHHhhcCCCCcEEEECCcHHHHHHHHHHHHHhhcCCCcEEEecCCCCHHHHHHHHHHhhcCCCeEEEEcc------h
Confidence 33444443235678999999999999999999876 99999999999999999999999999999999999 7
Q ss_pred HHHHHHhcCCcEEEeeCCCChHHHHHHHHHhhCC
Q psy437 100 VAAALAQERINAISYHAGLADKLRNEVQMKWISN 133 (184)
Q Consensus 100 ~a~gL~~~gi~~~vih~~~p~~~r~~~~~~f~~~ 133 (184)
+++|+|.++++ +|||+++|.+...|+|+..|.|
T Consensus 351 ~~~GiDip~v~-~VI~~~~p~s~~~y~Qr~GRag 383 (579)
T 3sqw_A 351 GARGMDFPNVH-EVLQIGVPSELANYIHRIGRTA 383 (579)
T ss_dssp GTSSCCCTTCC-EEEEESCCSSTTHHHHHHTTSS
T ss_pred hhcCCCcccCC-EEEEcCCCCCHHHhhhhccccc
Confidence 78899999999 9999999999999999997654
No 21
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=99.66 E-value=1.5e-16 Score=130.79 Aligned_cols=111 Identities=13% Similarity=0.204 Sum_probs=100.7
Q ss_pred EccChHHHHHHHHHhhcCCCcEEEEeccHHHHHHHHHHHHhCCCeeEEecCCCCHHHHHHHHHHHhccCceEEEEEeecc
Q psy437 16 PKKNVLKEVISLIKAKYSGQSGIVYCLTRKECDSVAAALAQERINAISYHAGLADKLRNEVQMKWISNKVHVGHWTVVSK 95 (184)
Q Consensus 16 ~~~~k~~~L~~~l~~~~~~~~~IIf~~tr~~~e~la~~L~~~gi~~~~~hg~l~~~~R~~~~~~f~~g~~~vlVaT~tr~ 95 (184)
....+...|.+++... ...++||||+|++.++.+++.|.+.|+++..+||++++++|..++++|++|+.+|||+|+
T Consensus 233 ~~~~~~~~l~~~l~~~-~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~--- 308 (391)
T 1xti_A 233 KDNEKNRKLFDLLDVL-EFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATN--- 308 (391)
T ss_dssp CGGGHHHHHHHHHHHS-CCSEEEEECSCHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTCCSEEEESC---
T ss_pred CchhHHHHHHHHHHhc-CCCcEEEEeCcHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhcCCCcEEEECC---
Confidence 4446888888888664 778999999999999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHhcCCcEEEeeCCCChHHHHHHHHHhhCCC
Q psy437 96 ECDSVAAALAQERINAISYHAGLADKLRNEVQMKWISNK 134 (184)
Q Consensus 96 ~~e~~a~gL~~~gi~~~vih~~~p~~~r~~~~~~f~~~~ 134 (184)
.+++|+|.++++ .|+|+++|.+...|+|+..|.|.
T Consensus 309 ---~~~~Gidi~~~~-~Vi~~~~p~s~~~~~Qr~GR~~R 343 (391)
T 1xti_A 309 ---LFGRGMDIERVN-IAFNYDMPEDSDTYLHRVARAGR 343 (391)
T ss_dssp ---CCSSCBCCTTEE-EEEESSCCSSHHHHHHHHCBCSS
T ss_pred ---hhhcCCCcccCC-EEEEeCCCCCHHHHHHhcccccC
Confidence 557799999999 99999999999999999976543
No 22
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=99.66 E-value=3.6e-16 Score=128.25 Aligned_cols=121 Identities=14% Similarity=0.126 Sum_probs=102.6
Q ss_pred CCCCeEEEEEEcc---ChHHHHHHHHHhhcCCCcEEEEeccHHHHHHHHHHHHhCCCeeEEecCCCCHHHHHHHHHHHhc
Q psy437 6 NRANLKYEILPKK---NVLKEVISLIKAKYSGQSGIVYCLTRKECDSVAAALAQERINAISYHAGLADKLRNEVQMKWIS 82 (184)
Q Consensus 6 ~R~Nl~y~v~~~~---~k~~~L~~~l~~~~~~~~~IIf~~tr~~~e~la~~L~~~gi~~~~~hg~l~~~~R~~~~~~f~~ 82 (184)
..+++........ .+...+..++.. ....++||||++++.++.+++.|...|+.+..+||+|++++|..+++.|++
T Consensus 213 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~ 291 (395)
T 3pey_A 213 NVDAIKQLYMDCKNEADKFDVLTELYGL-MTIGSSIIFVATKKTANVLYGKLKSEGHEVSILHGDLQTQERDRLIDDFRE 291 (395)
T ss_dssp SCTTEEEEEEECSSHHHHHHHHHHHHTT-TTSSEEEEECSCHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHT
T ss_pred ccccccEEEEEcCchHHHHHHHHHHHHh-ccCCCEEEEeCCHHHHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHHHHC
Confidence 3455544444332 366666666644 366899999999999999999999999999999999999999999999999
Q ss_pred cCceEEEEEeecccHHHHHHHHHhcCCcEEEeeCCCCh------HHHHHHHHHhhCCC
Q psy437 83 NKVHVGHWTVVSKECDSVAAALAQERINAISYHAGLAD------KLRNEVQMKWISNK 134 (184)
Q Consensus 83 g~~~vlVaT~tr~~~e~~a~gL~~~gi~~~vih~~~p~------~~r~~~~~~f~~~~ 134 (184)
|+.+|||||+ .+++|+|.++++ +|+|+++|. +...|+|+.+|.|.
T Consensus 292 g~~~vlv~T~------~~~~Gidip~~~-~Vi~~~~p~~~~~~~s~~~~~Qr~GR~gR 342 (395)
T 3pey_A 292 GRSKVLITTN------VLARGIDIPTVS-MVVNYDLPTLANGQADPATYIHRIGRTGR 342 (395)
T ss_dssp TSCCEEEECG------GGSSSCCCTTEE-EEEESSCCBCTTSSBCHHHHHHHHTTSSC
T ss_pred CCCCEEEECC------hhhcCCCcccCC-EEEEcCCCCCCcCCCCHHHhhHhcccccc
Confidence 9999999999 678899999999 999999999 99999999977653
No 23
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=99.65 E-value=2e-16 Score=130.61 Aligned_cols=122 Identities=12% Similarity=0.191 Sum_probs=105.0
Q ss_pred CCCCCeE--EEEEEccChHHHHHHHHHhhcCCCcEEEEeccHHHHHHHHHHHHhCCCeeEEecCCCCHHHHHHHHHHHhc
Q psy437 5 FNRANLK--YEILPKKNVLKEVISLIKAKYSGQSGIVYCLTRKECDSVAAALAQERINAISYHAGLADKLRNEVQMKWIS 82 (184)
Q Consensus 5 ~~R~Nl~--y~v~~~~~k~~~L~~~l~~~~~~~~~IIf~~tr~~~e~la~~L~~~gi~~~~~hg~l~~~~R~~~~~~f~~ 82 (184)
...+++. |.......|...+..++... ...++||||+|++.++.+++.|...|+.+..+||+|++++|..+++.|++
T Consensus 228 ~~~~~~~~~~~~~~~~~k~~~l~~~~~~~-~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~ 306 (400)
T 1s2m_A 228 LTLKGITQYYAFVEERQKLHCLNTLFSKL-QINQAIIFCNSTNRVELLAKKITDLGYSCYYSHARMKQQERNKVFHEFRQ 306 (400)
T ss_dssp CBCTTEEEEEEECCGGGHHHHHHHHHHHS-CCSEEEEECSSHHHHHHHHHHHHHHTCCEEEECTTSCHHHHHHHHHHHHT
T ss_pred cccCCceeEEEEechhhHHHHHHHHHhhc-CCCcEEEEEecHHHHHHHHHHHHhcCCCeEEecCCCCHHHHHHHHHHHhc
Confidence 3455664 33334446788888888653 66799999999999999999999999999999999999999999999999
Q ss_pred cCceEEEEEeecccHHHHHHHHHhcCCcEEEeeCCCChHHHHHHHHHhhCCC
Q psy437 83 NKVHVGHWTVVSKECDSVAAALAQERINAISYHAGLADKLRNEVQMKWISNK 134 (184)
Q Consensus 83 g~~~vlVaT~tr~~~e~~a~gL~~~gi~~~vih~~~p~~~r~~~~~~f~~~~ 134 (184)
|+.+|||+|+ .+++|+|.++++ .|+|+++|.+...|+|+..|.|.
T Consensus 307 g~~~vLv~T~------~~~~Gidip~~~-~Vi~~~~p~s~~~~~Qr~GR~gR 351 (400)
T 1s2m_A 307 GKVRTLVCSD------LLTRGIDIQAVN-VVINFDFPKTAETYLHRIGRSGR 351 (400)
T ss_dssp TSSSEEEESS------CSSSSCCCTTEE-EEEESSCCSSHHHHHHHHCBSSC
T ss_pred CCCcEEEEcC------ccccCCCccCCC-EEEEeCCCCCHHHHHHhcchhcC
Confidence 9999999999 667899999999 99999999999999999976543
No 24
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=99.64 E-value=1e-15 Score=112.57 Aligned_cols=101 Identities=14% Similarity=0.112 Sum_probs=87.9
Q ss_pred HHHHHHHHHHhc--cCceEEEEEeecccHHHHHHHHHhcCCcEEEeeCCCChHHHHHHHHHhhCCCceEEEE-------E
Q psy437 71 KLRNEVQMKWIS--NKVHVGHWTVVSKECDSVAAALAQERINAISYHAGLADKLRNEVQMKWISNKVHLYNV-------W 141 (184)
Q Consensus 71 ~~R~~~~~~f~~--g~~~vlVaT~tr~~~e~~a~gL~~~gi~~~vih~~~p~~~r~~~~~~f~~~~~~v~va-------~ 141 (184)
.+|...+..+.. ...++||+|+++..++.++..|...|+++..+|+++|+..|..+.+.|++|++.|+++ +
T Consensus 20 ~~K~~~L~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gl 99 (163)
T 2hjv_A 20 ENKFSLLKDVLMTENPDSCIIFCRTKEHVNQLTDELDDLGYPCDKIHGGMIQEDRFDVMNEFKRGEYRYLVATDVAARGI 99 (163)
T ss_dssp GGHHHHHHHHHHHHCCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEECGGGTTTC
T ss_pred HHHHHHHHHHHHhcCCCcEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHHcCCCeEEEECChhhcCC
Confidence 344444444432 2347999999999999999999999999999999999999999999999999999999 6
Q ss_pred ecCCccEEEecCCCCCccccccccccccCCcc
Q psy437 142 KIQWKRIIWIHSLVLIKPDYLPPILDLRLGRE 173 (184)
Q Consensus 142 D~~~vr~v~~~~~p~~~e~y~~~i~~~~~~r~ 173 (184)
|+|++++|+++++|.+.+.|+|+++ |+||.
T Consensus 100 d~~~~~~Vi~~~~p~~~~~~~qr~G--R~~R~ 129 (163)
T 2hjv_A 100 DIENISLVINYDLPLEKESYVHRTG--RTGRA 129 (163)
T ss_dssp CCSCCSEEEESSCCSSHHHHHHHTT--TSSCT
T ss_pred chhcCCEEEEeCCCCCHHHHHHhcc--ccCcC
Confidence 9999999999999999999999995 55554
No 25
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=99.63 E-value=3.2e-16 Score=134.28 Aligned_cols=108 Identities=8% Similarity=0.105 Sum_probs=58.2
Q ss_pred ChHHHHHHHHHhh---cCCCcEEEEeccHHHHHHHHHHHHhC------------CCeeEEecCCCCHHHHHHHHHHHhc-
Q psy437 19 NVLKEVISLIKAK---YSGQSGIVYCLTRKECDSVAAALAQE------------RINAISYHAGLADKLRNEVQMKWIS- 82 (184)
Q Consensus 19 ~k~~~L~~~l~~~---~~~~~~IIf~~tr~~~e~la~~L~~~------------gi~~~~~hg~l~~~~R~~~~~~f~~- 82 (184)
.|...|.++|.+. ..+.++||||+++..++.+++.|... |.....+||+|++++|..++++|++
T Consensus 372 ~K~~~L~~~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~ 451 (556)
T 4a2p_A 372 PKLEELVCILDDAYRYNPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTS 451 (556)
T ss_dssp HHHHHHHHHHHHHHHHCTTCCEEEEESSHHHHHHHHHHHTTCSGGGSCCEEC----------------------------
T ss_pred hHHHHHHHHHHHHhcCCCCceEEEEEccHHHHHHHHHHHHhCCCcceeeeeEEEccCCcccccccCHHHHHHHHHHhccc
Confidence 4788888888643 36789999999999999999999875 5566667889999999999999999
Q ss_pred cCceEEEEEeecccHHHHHHHHHhcCCcEEEeeCCCChHHHHHHHHHhhCCC
Q psy437 83 NKVHVGHWTVVSKECDSVAAALAQERINAISYHAGLADKLRNEVQMKWISNK 134 (184)
Q Consensus 83 g~~~vlVaT~tr~~~e~~a~gL~~~gi~~~vih~~~p~~~r~~~~~~f~~~~ 134 (184)
|+.+|||||+ .+++|||.++++ .|||+|+|.+...|+|+.+| |.
T Consensus 452 g~~~vLvaT~------~~~~GiDip~v~-~VI~~d~p~s~~~~~Qr~GR-gR 495 (556)
T 4a2p_A 452 KDNRLLIATS------VADEGIDIVQCN-LVVLYEYSGNVTKMIQVRGR-GR 495 (556)
T ss_dssp --CCEEEEEC-----------------C-EEEEETCCSCHHHHHHC------
T ss_pred CceEEEEEcC------chhcCCCchhCC-EEEEeCCCCCHHHHHHhcCC-CC
Confidence 9999999999 889999999999 99999999999999999988 54
No 26
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=99.63 E-value=1.5e-16 Score=131.68 Aligned_cols=108 Identities=13% Similarity=0.160 Sum_probs=90.3
Q ss_pred ChHHHHHHHHHhhcCCCcEEEEeccHHHHHHHHHHHHhCCCeeEEecCCCCHHHHHHHHHHHhccCceEEEEEeecccHH
Q psy437 19 NVLKEVISLIKAKYSGQSGIVYCLTRKECDSVAAALAQERINAISYHAGLADKLRNEVQMKWISNKVHVGHWTVVSKECD 98 (184)
Q Consensus 19 ~k~~~L~~~l~~~~~~~~~IIf~~tr~~~e~la~~L~~~gi~~~~~hg~l~~~~R~~~~~~f~~g~~~vlVaT~tr~~~e 98 (184)
.+...+..++... ...++||||+|++.++.+++.|...++.+..+||+|++++|..+++.|++|+.+|||||+
T Consensus 266 ~~~~~l~~~~~~~-~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~------ 338 (414)
T 3eiq_A 266 WKLDTLCDLYETL-TITQAVIFINTRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRSGSSRVLITTD------ 338 (414)
T ss_dssp THHHHHHHHHHSS-CCSSCEEECSCHHHHHHHHHHHHTTTCCCEEC---CHHHHHHHHHHHHSCC---CEEECS------
T ss_pred hHHHHHHHHHHhC-CCCcEEEEeCCHHHHHHHHHHHHhcCCeEEEecCCCCHHHHHHHHHHHHcCCCcEEEECC------
Confidence 4888888888654 667999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCcEEEeeCCCChHHHHHHHHHhhCCC
Q psy437 99 SVAAALAQERINAISYHAGLADKLRNEVQMKWISNK 134 (184)
Q Consensus 99 ~~a~gL~~~gi~~~vih~~~p~~~r~~~~~~f~~~~ 134 (184)
.+++|+|.++++ +|||+++|.+...|+|+..|.|.
T Consensus 339 ~~~~Gidip~v~-~Vi~~~~p~s~~~~~Qr~GR~gR 373 (414)
T 3eiq_A 339 LLARGIDVQQVS-LVINYDLPTNRENYIHRIGRGGR 373 (414)
T ss_dssp SCC--CCGGGCS-CEEESSCCSSTHHHHHHSCCC--
T ss_pred ccccCCCccCCC-EEEEeCCCCCHHHhhhhcCcccC
Confidence 668899999999 89999999999999999976543
No 27
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=99.62 E-value=2.5e-16 Score=140.44 Aligned_cols=122 Identities=12% Similarity=0.028 Sum_probs=101.2
Q ss_pred CCCCCCeEE-----EEEEccChHHHHHHHHHhh-cCCCcEEEEeccHHHHHHHHHHHHhCCCeeEEecCCCCHHHHHHHH
Q psy437 4 SFNRANLKY-----EILPKKNVLKEVISLIKAK-YSGQSGIVYCLTRKECDSVAAALAQERINAISYHAGLADKLRNEVQ 77 (184)
Q Consensus 4 s~~R~Nl~y-----~v~~~~~k~~~L~~~l~~~-~~~~~~IIf~~tr~~~e~la~~L~~~gi~~~~~hg~l~~~~R~~~~ 77 (184)
+.+||++.. .......|...|.+.+.+. ..+.++||||+|++.++.++..|.+.|+++.++||++++.+|..+.
T Consensus 396 Ptn~p~~r~d~~d~v~~~~~~K~~al~~~i~~~~~~~~pvLVft~s~~~se~Ls~~L~~~gi~~~vLhg~~~~rEr~ii~ 475 (844)
T 1tf5_A 396 PTNRPVVRDDRPDLIYRTMEGKFKAVAEDVAQRYMTGQPVLVGTVAVETSELISKLLKNKGIPHQVLNAKNHEREAQIIE 475 (844)
T ss_dssp CCSSCCCCEECCCEEESSHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHHHHHHTTTCCCEEECSSCHHHHHHHHT
T ss_pred cCCCCcccccCCcEEEeCHHHHHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHCCCCEEEeeCCccHHHHHHHH
Confidence 456777542 2223346888888888642 2567899999999999999999999999999999999888887777
Q ss_pred HHHhccCceEEEEEeecccHHHHHHHHHhc--------CCcEEEeeCCCChHHHHHHHHHhhCCC
Q psy437 78 MKWISNKVHVGHWTVVSKECDSVAAALAQE--------RINAISYHAGLADKLRNEVQMKWISNK 134 (184)
Q Consensus 78 ~~f~~g~~~vlVaT~tr~~~e~~a~gL~~~--------gi~~~vih~~~p~~~r~~~~~~f~~~~ 134 (184)
++++.| .|+|||+ .++||+|++ |+. +|||+++|.+.|.|+|+.+++|.
T Consensus 476 ~ag~~g--~VlIATd------mAgRG~DI~l~~~V~~~ggl-~VIn~d~p~s~r~y~hr~GRTGR 531 (844)
T 1tf5_A 476 EAGQKG--AVTIATN------MAGRGTDIKLGEGVKELGGL-AVVGTERHESRRIDNQLRGRSGR 531 (844)
T ss_dssp TTTSTT--CEEEEET------TSSTTCCCCCCTTSGGGTSE-EEEESSCCSSHHHHHHHHTTSSG
T ss_pred HcCCCC--eEEEeCC------ccccCcCccccchhhhcCCc-EEEEecCCCCHHHHHhhcCcccc
Confidence 666655 6899999 889999999 888 99999999999999999987764
No 28
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=99.62 E-value=1.3e-15 Score=116.71 Aligned_cols=88 Identities=18% Similarity=0.118 Sum_probs=82.5
Q ss_pred CceEEEEEeecccHHHHHHHHHhcCCcEEEeeCCCChHHHHHHHHHhhCCCceEEEE-------EecCCccEEEecCCCC
Q psy437 84 KVHVGHWTVVSKECDSVAAALAQERINAISYHAGLADKLRNEVQMKWISNKVHLYNV-------WKIQWKRIIWIHSLVL 156 (184)
Q Consensus 84 ~~~vlVaT~tr~~~e~~a~gL~~~gi~~~vih~~~p~~~r~~~~~~f~~~~~~v~va-------~D~~~vr~v~~~~~p~ 156 (184)
..++||+|+++..++.++..|...|+.+.++|+++|+..|..+.+.|++|+..|+|+ +|+|++++|+++++|.
T Consensus 31 ~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gidi~~v~~Vi~~~~p~ 110 (212)
T 3eaq_A 31 PDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDLSQGERERVLGAFRQGEVRVLVATDVAARGLDIPQVDLVVHYRLPD 110 (212)
T ss_dssp CSCEEEECSSHHHHHHHHHHHHHHTCCEEEECSSSCHHHHHHHHHHHHSSSCCEEEECTTTTCSSSCCCBSEEEESSCCS
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHCCCCeEEEecChhhcCCCCccCcEEEECCCCc
Confidence 458999999999999999999999999999999999999999999999999999999 6999999999999999
Q ss_pred CccccccccccccCCcc
Q psy437 157 IKPDYLPPILDLRLGRE 173 (184)
Q Consensus 157 ~~e~y~~~i~~~~~~r~ 173 (184)
+.+.|+|+++ |+||.
T Consensus 111 ~~~~~~qr~G--R~gR~ 125 (212)
T 3eaq_A 111 RAEAYQHRSG--RTGRA 125 (212)
T ss_dssp SHHHHHHHHT--TBCCC
T ss_pred CHHHHHHHhc--ccCCC
Confidence 9999999996 55554
No 29
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=99.61 E-value=1.9e-15 Score=114.16 Aligned_cols=102 Identities=12% Similarity=0.118 Sum_probs=88.8
Q ss_pred HHHHHHHHHHHhc-cCceEEEEEeecccHHHHHHHHHhcCCcEEEeeCCCChHHHHHHHHHhhCCCceEEEE-------E
Q psy437 70 DKLRNEVQMKWIS-NKVHVGHWTVVSKECDSVAAALAQERINAISYHAGLADKLRNEVQMKWISNKVHLYNV-------W 141 (184)
Q Consensus 70 ~~~R~~~~~~f~~-g~~~vlVaT~tr~~~e~~a~gL~~~gi~~~vih~~~p~~~r~~~~~~f~~~~~~v~va-------~ 141 (184)
..++...+..+.. ...++||+|+++..++.++..|...|+++..+|+++++..|..+.+.|++|++.|+|+ +
T Consensus 39 ~~~K~~~L~~~l~~~~~~~lVF~~~~~~~~~l~~~L~~~g~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT~~~~~Gl 118 (191)
T 2p6n_A 39 EEAKMVYLLECLQKTPPPVLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEAFREGKKDVLVATDVASKGL 118 (191)
T ss_dssp GGGHHHHHHHHHTTSCSCEEEECSCHHHHHHHHHHHHHHTCCEEEECTTSCHHHHHHHHHHHHHTSCSEEEECHHHHTTC
T ss_pred hHHHHHHHHHHHHhCCCCEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCCCEEEEEcCchhcCC
Confidence 3455555555543 2347999999999999999999999999999999999999999999999999999999 6
Q ss_pred ecCCccEEEecCCCCCccccccccccccCCcc
Q psy437 142 KIQWKRIIWIHSLVLIKPDYLPPILDLRLGRE 173 (184)
Q Consensus 142 D~~~vr~v~~~~~p~~~e~y~~~i~~~~~~r~ 173 (184)
|+|++++|+++++|.+.+.|+|+++ |+||.
T Consensus 119 di~~v~~VI~~d~p~~~~~~~qr~G--R~gR~ 148 (191)
T 2p6n_A 119 DFPAIQHVINYDMPEEIENYVHRIG--RTGCS 148 (191)
T ss_dssp CCCCCSEEEESSCCSSHHHHHHHHT--TSCC-
T ss_pred CcccCCEEEEeCCCCCHHHHHHHhC--ccccC
Confidence 9999999999999999999999996 55554
No 30
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=99.61 E-value=1.6e-15 Score=112.61 Aligned_cols=101 Identities=17% Similarity=0.208 Sum_probs=87.6
Q ss_pred HHHHHHHHHHhc--cCceEEEEEeecccHHHHHHHHHhcCCcEEEeeCCCChHHHHHHHHHhhCCCceEEEE-------E
Q psy437 71 KLRNEVQMKWIS--NKVHVGHWTVVSKECDSVAAALAQERINAISYHAGLADKLRNEVQMKWISNKVHLYNV-------W 141 (184)
Q Consensus 71 ~~R~~~~~~f~~--g~~~vlVaT~tr~~~e~~a~gL~~~gi~~~vih~~~p~~~r~~~~~~f~~~~~~v~va-------~ 141 (184)
.++...+..+.. ...++||+|+++..|+.++..|...|+++..+|+++|+..|..+.+.|++|++.|+++ +
T Consensus 16 ~~K~~~L~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gl 95 (172)
T 1t5i_A 16 NEKNRKLFDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGM 95 (172)
T ss_dssp GGHHHHHHHHHHHSCCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEESSCCSTTC
T ss_pred HHHHHHHHHHHHhCCCCcEEEEECCHHHHHHHHHHHHhcCCCEEEEECCCCHHHHHHHHHHHHCCCCcEEEECCchhcCc
Confidence 344444444432 2347999999999999999999999999999999999999999999999999999999 6
Q ss_pred ecCCccEEEecCCCCCccccccccccccCCcc
Q psy437 142 KIQWKRIIWIHSLVLIKPDYLPPILDLRLGRE 173 (184)
Q Consensus 142 D~~~vr~v~~~~~p~~~e~y~~~i~~~~~~r~ 173 (184)
|+|++++|+++++|.+.+.|+|+++ |+||.
T Consensus 96 di~~~~~Vi~~d~p~~~~~~~qr~G--R~~R~ 125 (172)
T 1t5i_A 96 DIERVNIAFNYDMPEDSDTYLHRVA--RAGRF 125 (172)
T ss_dssp CGGGCSEEEESSCCSSHHHHHHHHH--HHTGG
T ss_pred chhhCCEEEEECCCCCHHHHHHHhc--ccccC
Confidence 9999999999999999999999996 55553
No 31
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=99.61 E-value=1.3e-16 Score=140.98 Aligned_cols=94 Identities=18% Similarity=0.215 Sum_probs=82.8
Q ss_pred CCcEEEEeccHHHHHHHHHHHHhC------CCeeEEecCC--------CCHHHHHHHHHHHhccCceEEEEEeecccHHH
Q psy437 34 GQSGIVYCLTRKECDSVAAALAQE------RINAISYHAG--------LADKLRNEVQMKWISNKVHVGHWTVVSKECDS 99 (184)
Q Consensus 34 ~~~~IIf~~tr~~~e~la~~L~~~------gi~~~~~hg~--------l~~~~R~~~~~~f~~g~~~vlVaT~tr~~~e~ 99 (184)
+.++||||+|+..++.+++.|... |+++..+||+ |++.+|.+++++|++|+.+|||||+ .
T Consensus 400 ~~~~IVF~~s~~~~~~l~~~L~~~~~l~~~g~~~~~lhg~~~~~~~~~~~~~eR~~~~~~F~~g~~~VLVaT~------~ 473 (699)
T 4gl2_A 400 SARGIIFTKTRQSAYALSQWITENEKFAEVGVKAHHLIGAGHSSEFKPMTQNEQKEVISKFRTGKINLLIATT------V 473 (699)
T ss_dssp CCCEEEECSCHHHHHHHHHHHHSSCSCC-----CEECCCSCCCTTCCCCCHHHHHHHHHHHCC---CCSEEEC------S
T ss_pred CCcEEEEECcHHHHHHHHHHHHhCccccccCcceEEEECCCCccCCCCCCHHHHHHHHHHHhcCCCcEEEEcc------c
Confidence 689999999999999999999987 8999999999 9999999999999999999999999 5
Q ss_pred HHHHHHhcCCcEEEeeCCCChHHHHHHHHHhhCCC
Q psy437 100 VAAALAQERINAISYHAGLADKLRNEVQMKWISNK 134 (184)
Q Consensus 100 ~a~gL~~~gi~~~vih~~~p~~~r~~~~~~f~~~~ 134 (184)
+++|||.++++ +|||+|+|.+...|+|+.+|.|.
T Consensus 474 ~~~GIDip~v~-~VI~~d~p~s~~~~~Qr~GRArr 507 (699)
T 4gl2_A 474 AEEGLDIKECN-IVIRYGLVTNEIAMVQARGRARA 507 (699)
T ss_dssp CCTTSCCCSCC-CCEEESCCCCHHHHHHHHTTSCS
T ss_pred cccCCccccCC-EEEEeCCCCCHHHHHHHcCCCCC
Confidence 57799999999 99999999999999999987553
No 32
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=99.60 E-value=5.7e-17 Score=137.59 Aligned_cols=108 Identities=17% Similarity=0.172 Sum_probs=0.0
Q ss_pred ChHHHHHHHHHhhcCCCcEEEEeccHHHHHHHHHHHHhCCCeeEEecCCCCHHHHHHHHHHHhccCceEEEEEeecccHH
Q psy437 19 NVLKEVISLIKAKYSGQSGIVYCLTRKECDSVAAALAQERINAISYHAGLADKLRNEVQMKWISNKVHVGHWTVVSKECD 98 (184)
Q Consensus 19 ~k~~~L~~~l~~~~~~~~~IIf~~tr~~~e~la~~L~~~gi~~~~~hg~l~~~~R~~~~~~f~~g~~~vlVaT~tr~~~e 98 (184)
.+...|..++... ...++||||+|+..|+.++..|...++.+..+||+|++.+|..+++.|++|+.+|||||+
T Consensus 319 ~~~~~l~~~~~~~-~~~~~lvF~~s~~~~~~l~~~L~~~~~~v~~lh~~~~~~~R~~~~~~f~~g~~~iLv~T~------ 391 (479)
T 3fmp_B 319 EKFQALCNLYGAI-TIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTN------ 391 (479)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHhhc-cCCceEEEeCcHHHHHHHHHHHHhCCccEEEecCCCCHHHHHHHHHHHHcCCCcEEEEcc------
Confidence 4666666666543 567899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCcEEEeeCCCC------hHHHHHHHHHhhCCC
Q psy437 99 SVAAALAQERINAISYHAGLA------DKLRNEVQMKWISNK 134 (184)
Q Consensus 99 ~~a~gL~~~gi~~~vih~~~p------~~~r~~~~~~f~~~~ 134 (184)
.+++|+|.++++ +|||+|+| .+...|+|+.+|.|.
T Consensus 392 ~~~~GlDip~v~-~VI~~d~p~~~~~~~s~~~~~Qr~GRagR 432 (479)
T 3fmp_B 392 VCARGIDVEQVS-VVINFDLPVDKDGNPDNETYLHRIGRTGR 432 (479)
T ss_dssp ------------------------------------------
T ss_pred ccccCCccccCC-EEEEecCCCCCccCCCHHHHHHHhccccc
Confidence 889999999999 99999999 567899999977654
No 33
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=99.60 E-value=4.8e-15 Score=130.90 Aligned_cols=116 Identities=16% Similarity=0.122 Sum_probs=101.1
Q ss_pred EEEEEccChHHHHHHHHHhhc-CCCcEEEEeccHHHHHHHHHHHHhCCCeeEEecCCCCHHHHHHHHHHHhccCceEEEE
Q psy437 12 YEILPKKNVLKEVISLIKAKY-SGQSGIVYCLTRKECDSVAAALAQERINAISYHAGLADKLRNEVQMKWISNKVHVGHW 90 (184)
Q Consensus 12 y~v~~~~~k~~~L~~~l~~~~-~~~~~IIf~~tr~~~e~la~~L~~~gi~~~~~hg~l~~~~R~~~~~~f~~g~~~vlVa 90 (184)
+.+.+...+...|...|.+.. .+.++||||+|+..++.+++.|.+.|+++.++||++++.+|..+++.|++|+++|||+
T Consensus 422 i~v~~~~~~~~~Ll~~l~~~~~~~~~vlVf~~t~~~ae~L~~~L~~~gi~~~~lh~~~~~~~R~~~l~~f~~g~~~VLVa 501 (661)
T 2d7d_A 422 IDVRPIEGQIDDLIGEIQARIERNERVLVTTLTKKMSEDLTDYLKEIGIKVNYLHSEIKTLERIEIIRDLRLGKYDVLVG 501 (661)
T ss_dssp EEEECSTTHHHHHHHHHHHHHTTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHHHHTSCSEEEE
T ss_pred EEEecccchHHHHHHHHHHHHhcCCeEEEEECCHHHHHHHHHHHHhcCCCeEEEeCCCCHHHHHHHHHHHhcCCeEEEEe
Confidence 444555556667766665432 4678999999999999999999999999999999999999999999999999999999
Q ss_pred EeecccHHHHHHHHHhcCCcEEEeeCCC-----ChHHHHHHHHHhhCCC
Q psy437 91 TVVSKECDSVAAALAQERINAISYHAGL-----ADKLRNEVQMKWISNK 134 (184)
Q Consensus 91 T~tr~~~e~~a~gL~~~gi~~~vih~~~-----p~~~r~~~~~~f~~~~ 134 (184)
|+ .+++|+|.++++ +|++++. |.+.++|+|+.++.|.
T Consensus 502 T~------~l~~GlDip~v~-lVi~~d~d~~G~p~s~~~~iQr~GRagR 543 (661)
T 2d7d_A 502 IN------LLREGLDIPEVS-LVAILDADKEGFLRSERSLIQTIGRAAR 543 (661)
T ss_dssp SC------CCSTTCCCTTEE-EEEETTTTCCTTTTSHHHHHHHHHTTTT
T ss_pred cc------hhhCCcccCCCC-EEEEeCcccccCCCCHHHHHHHhCcccC
Confidence 99 778999999999 9999997 9999999999987653
No 34
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=99.60 E-value=4.9e-15 Score=110.02 Aligned_cols=99 Identities=12% Similarity=0.073 Sum_probs=85.5
Q ss_pred HHHHHHHHhc--cCceEEEEEeecccHHHHHHHHHhcCCcEEEeeCCCChHHHHHHHHHhhCCCceEEEE-------Eec
Q psy437 73 RNEVQMKWIS--NKVHVGHWTVVSKECDSVAAALAQERINAISYHAGLADKLRNEVQMKWISNKVHLYNV-------WKI 143 (184)
Q Consensus 73 R~~~~~~f~~--g~~~vlVaT~tr~~~e~~a~gL~~~gi~~~vih~~~p~~~r~~~~~~f~~~~~~v~va-------~D~ 143 (184)
+...+..+.. ...++||+++++..|+.++..|...|+.+..+|+++|+..|..+.+.|++|++.|+|+ +|+
T Consensus 21 K~~~L~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~R~~~~~~f~~g~~~vLvaT~~~~~Gid~ 100 (175)
T 2rb4_A 21 KYQALCNIYGSITIGQAIIFCQTRRNAKWLTVEMIQDGHQVSLLSGELTVEQRASIIQRFRDGKEKVLITTNVCARGIDV 100 (175)
T ss_dssp HHHHHHHHHTTSCCSEEEEECSCHHHHHHHHHHHHTTTCCEEEECSSCCHHHHHHHHHHHHTTSCSEEEECCSCCTTTCC
T ss_pred HHHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEecchhcCCCc
Confidence 4444444443 2347999999999999999999999999999999999999999999999999999999 599
Q ss_pred CCccEEEecCCC------CCccccccccccccCCcc
Q psy437 144 QWKRIIWIHSLV------LIKPDYLPPILDLRLGRE 173 (184)
Q Consensus 144 ~~vr~v~~~~~p------~~~e~y~~~i~~~~~~r~ 173 (184)
|++++|+++++| .+.++|+|+++ |+||.
T Consensus 101 ~~~~~Vi~~d~p~~~~~~~~~~~~~qr~G--R~gR~ 134 (175)
T 2rb4_A 101 KQVTIVVNFDLPVKQGEEPDYETYLHRIG--RTGRF 134 (175)
T ss_dssp TTEEEEEESSCCC--CCSCCHHHHHHHHC--BC---
T ss_pred ccCCEEEEeCCCCCccccCCHHHHHHHhc--ccccC
Confidence 999999999999 99999999995 66664
No 35
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=99.59 E-value=6.1e-15 Score=130.27 Aligned_cols=122 Identities=13% Similarity=0.104 Sum_probs=102.9
Q ss_pred EEEEEccChHHHHHHHHHhhc-CCCcEEEEeccHHHHHHHHHHHHhCCCeeEEecCCCCHHHHHHHHHHHhccCceEEEE
Q psy437 12 YEILPKKNVLKEVISLIKAKY-SGQSGIVYCLTRKECDSVAAALAQERINAISYHAGLADKLRNEVQMKWISNKVHVGHW 90 (184)
Q Consensus 12 y~v~~~~~k~~~L~~~l~~~~-~~~~~IIf~~tr~~~e~la~~L~~~gi~~~~~hg~l~~~~R~~~~~~f~~g~~~vlVa 90 (184)
+.+.+...+...|...|.+.. .+.++||||+|+..++.+++.|.+.|+++.++||++++.+|..++++|++|+++||||
T Consensus 416 i~v~~~~~~~~~Ll~~l~~~~~~~~~vlVf~~t~~~ae~L~~~L~~~gi~~~~lh~~~~~~~R~~~~~~f~~g~~~VLva 495 (664)
T 1c4o_A 416 VRVKPTENQILDLMEGIRERAARGERTLVTVLTVRMAEELTSFLVEHGIRARYLHHELDAFKRQALIRDLRLGHYDCLVG 495 (664)
T ss_dssp EEEECSTTHHHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHHHTTSCSEEEE
T ss_pred EEEecccchHHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhcCCCceeecCCCCHHHHHHHHHHhhcCCceEEEc
Confidence 334444456666666665432 5679999999999999999999999999999999999999999999999999999999
Q ss_pred EeecccHHHHHHHHHhcCCcEEEeeCCC-----ChHHHHHHHHHhhCC---CceEEEE
Q psy437 91 TVVSKECDSVAAALAQERINAISYHAGL-----ADKLRNEVQMKWISN---KVHLYNV 140 (184)
Q Consensus 91 T~tr~~~e~~a~gL~~~gi~~~vih~~~-----p~~~r~~~~~~f~~~---~~~v~va 140 (184)
|+ .+++|+|.++++ +|+|++. |.+.++|+|+.++.| ...+++.
T Consensus 496 T~------~l~~GlDip~v~-lVI~~d~d~~G~p~s~~~~iQr~GRagR~~~G~~i~~ 546 (664)
T 1c4o_A 496 IN------LLREGLDIPEVS-LVAILDADKEGFLRSERSLIQTIGRAARNARGEVWLY 546 (664)
T ss_dssp SC------CCCTTCCCTTEE-EEEETTTTSCSGGGSHHHHHHHHGGGTTSTTCEEEEE
T ss_pred cC------hhhcCccCCCCC-EEEEeCCcccCCCCCHHHHHHHHCccCcCCCCEEEEE
Confidence 99 668899999999 9999997 999999999997654 3344444
No 36
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=99.58 E-value=2.7e-16 Score=138.84 Aligned_cols=108 Identities=9% Similarity=0.114 Sum_probs=64.8
Q ss_pred ChHHHHHHHHHhhc---CCCcEEEEeccHHHHHHHHHHHHhCC----CeeEEe--------cCCCCHHHHHHHHHHHhc-
Q psy437 19 NVLKEVISLIKAKY---SGQSGIVYCLTRKECDSVAAALAQER----INAISY--------HAGLADKLRNEVQMKWIS- 82 (184)
Q Consensus 19 ~k~~~L~~~l~~~~---~~~~~IIf~~tr~~~e~la~~L~~~g----i~~~~~--------hg~l~~~~R~~~~~~f~~- 82 (184)
.|...|.++|.+.. .+.++||||+++..++.+++.|...| +++..+ ||+|++++|.+++++|++
T Consensus 380 ~k~~~L~~ll~~~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~~~~l~G~~~~~~h~~~~~~eR~~v~~~F~~~ 459 (696)
T 2ykg_A 380 PKLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKAS 459 (696)
T ss_dssp HHHHHHHHHHHHHHTTCTTCCEEEECSCHHHHHHHHHHHHHCTTCCSCCEEC----------------------------
T ss_pred HHHHHHHHHHHHHhccCCCCcEEEEeCcHHHHHHHHHHHHhCCCccccceeEEEccCCCccccCCCHHHHHHHHHHHHhc
Confidence 47888888886542 46789999999999999999999988 888888 559999999999999998
Q ss_pred cCceEEEEEeecccHHHHHHHHHhcCCcEEEeeCCCChHHHHHHHHHhhCCC
Q psy437 83 NKVHVGHWTVVSKECDSVAAALAQERINAISYHAGLADKLRNEVQMKWISNK 134 (184)
Q Consensus 83 g~~~vlVaT~tr~~~e~~a~gL~~~gi~~~vih~~~p~~~r~~~~~~f~~~~ 134 (184)
|+.+|||||+ .+++|||.++++ +|||+|+|.+...|+||.+| |.
T Consensus 460 g~~~vLVaT~------v~~~GiDip~v~-~VI~~d~p~s~~~~~Qr~GR-GR 503 (696)
T 2ykg_A 460 GDHNILIATS------VADEGIDIAQCN-LVILYEYVGNVIKMIQTRGR-GR 503 (696)
T ss_dssp -CCSCSEEEE------SSCCC---CCCS-EEEEESCC--CCCC---------
T ss_pred CCccEEEEec------hhhcCCcCccCC-EEEEeCCCCCHHHHHHhhcc-Cc
Confidence 9999999999 556788888888 88888888888888888877 54
No 37
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=99.58 E-value=3.9e-15 Score=111.85 Aligned_cols=88 Identities=20% Similarity=0.158 Sum_probs=73.8
Q ss_pred CceEEEEEeecccHHHHHHHHHhcCCcEEEeeCCCChHHHHHHHHHhhCCCceEEEE-------EecCCccEEEecCCCC
Q psy437 84 KVHVGHWTVVSKECDSVAAALAQERINAISYHAGLADKLRNEVQMKWISNKVHLYNV-------WKIQWKRIIWIHSLVL 156 (184)
Q Consensus 84 ~~~vlVaT~tr~~~e~~a~gL~~~gi~~~vih~~~p~~~r~~~~~~f~~~~~~v~va-------~D~~~vr~v~~~~~p~ 156 (184)
..++||+|+++..++.++..|...|+.+..+|+++|+..|..+.+.|++|++.|+|+ +|+|++++|+++++|.
T Consensus 46 ~~k~lVF~~~~~~~~~l~~~L~~~g~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gldi~~~~~VI~~d~p~ 125 (185)
T 2jgn_A 46 DSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSPILVATAVAARGLDISNVKHVINFDLPS 125 (185)
T ss_dssp CSCEEEEESCHHHHHHHHHHHHHTTCCEEEEC--------CHHHHHHHHTSSSEEEEEC------CCCSBSEEEESSCCS
T ss_pred CCeEEEEECCHHHHHHHHHHHHHcCCceEEEeCCCCHHHHHHHHHHHHcCCCeEEEEcChhhcCCCcccCCEEEEeCCCC
Confidence 357999999999999999999999999999999999999999999999999999998 6999999999999999
Q ss_pred CccccccccccccCCcc
Q psy437 157 IKPDYLPPILDLRLGRE 173 (184)
Q Consensus 157 ~~e~y~~~i~~~~~~r~ 173 (184)
+.+.|+|+++ |+||.
T Consensus 126 s~~~~~Qr~G--R~~R~ 140 (185)
T 2jgn_A 126 DIEEYVHRIG--RTGRV 140 (185)
T ss_dssp SHHHHHHHHT--TBCCT
T ss_pred CHHHHHHHcc--ccCCC
Confidence 9999999996 55554
No 38
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=99.58 E-value=4.7e-15 Score=126.74 Aligned_cols=109 Identities=14% Similarity=0.128 Sum_probs=67.3
Q ss_pred ChHHHHHHHHHhh---cCCCcEEEEeccHHHHHHHHHHHHhCC----C--------eeEEecCCCCHHHHHHHHHHHhc-
Q psy437 19 NVLKEVISLIKAK---YSGQSGIVYCLTRKECDSVAAALAQER----I--------NAISYHAGLADKLRNEVQMKWIS- 82 (184)
Q Consensus 19 ~k~~~L~~~l~~~---~~~~~~IIf~~tr~~~e~la~~L~~~g----i--------~~~~~hg~l~~~~R~~~~~~f~~- 82 (184)
.|...|.++|.+. ....++||||+++..++.++..|...+ + ....+||+|++++|.+++++|++
T Consensus 371 ~k~~~l~~~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~ 450 (555)
T 3tbk_A 371 PKLRDLYLVLQEEYHLKPETKTILFVKTRALVDALKKWIEENPALSFLKPGILTGRGRTNRATGMTLPAQKCVLEAFRAS 450 (555)
T ss_dssp HHHHHHHHHHHHHHHHCTTCCEEEECSSHHHHHHHHHHHHHCGGGTTCCEEECCC-------------------------
T ss_pred HHHHHHHHHHHHHhccCCCceEEEEeCcHHHHHHHHHHHhhCcCcCceeeeEEEecCCcccccccCHHHHHHHHHHHhcC
Confidence 4777888777643 256899999999999999999999764 3 44455669999999999999999
Q ss_pred cCceEEEEEeecccHHHHHHHHHhcCCcEEEeeCCCChHHHHHHHHHhhCCCceEEEEEecCCccEEEecCCCCCccccc
Q psy437 83 NKVHVGHWTVVSKECDSVAAALAQERINAISYHAGLADKLRNEVQMKWISNKVHLYNVWKIQWKRIIWIHSLVLIKPDYL 162 (184)
Q Consensus 83 g~~~vlVaT~tr~~~e~~a~gL~~~gi~~~vih~~~p~~~r~~~~~~f~~~~~~v~va~D~~~vr~v~~~~~p~~~e~y~ 162 (184)
|+.+|||||++ ++ .| +|+|++++|||||+|.++..|+
T Consensus 451 g~~~vLvaT~~------~~-----~G--------------------------------lDlp~v~~VI~~d~p~s~~~~~ 487 (555)
T 3tbk_A 451 GDNNILIATSV------AD-----EG--------------------------------IDIAECNLVILYEYVGNVIKMI 487 (555)
T ss_dssp -CCSEEEECCC------TT-----CC--------------------------------EETTSCSEEEEESCCSSCCCEE
T ss_pred CCeeEEEEcch------hh-----cC--------------------------------CccccCCEEEEeCCCCCHHHHH
Confidence 99999999992 22 22 3788888888889999999999
Q ss_pred cccccccCCcc
Q psy437 163 PPILDLRLGRE 173 (184)
Q Consensus 163 ~~i~~~~~~r~ 173 (184)
|+++ | ||.
T Consensus 488 Qr~G--R-gR~ 495 (555)
T 3tbk_A 488 QTRG--R-GRA 495 (555)
T ss_dssp CSSC--C-CTT
T ss_pred HhcC--c-CcC
Confidence 9985 4 665
No 39
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=99.57 E-value=6.9e-15 Score=118.28 Aligned_cols=116 Identities=15% Similarity=0.157 Sum_probs=96.3
Q ss_pred CCCeEEEEEEccChHHHHHHHHHhhcCCCcEEEEeccHHHHHHHHHHHHhCCCeeEEecCCCCHHHHHHHHHHHhccCce
Q psy437 7 RANLKYEILPKKNVLKEVISLIKAKYSGQSGIVYCLTRKECDSVAAALAQERINAISYHAGLADKLRNEVQMKWISNKVH 86 (184)
Q Consensus 7 R~Nl~y~v~~~~~k~~~L~~~l~~~~~~~~~IIf~~tr~~~e~la~~L~~~gi~~~~~hg~l~~~~R~~~~~~f~~g~~~ 86 (184)
.+|+.+.............+.+... ...++||||+|++.++.+++.|. .+..+||++++.+|.+++++|++|+.+
T Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~lvf~~~~~~~~~l~~~l~----~~~~~~~~~~~~~r~~~~~~f~~~~~~ 268 (337)
T 2z0m_A 194 LANVEHKFVHVKDDWRSKVQALREN-KDKGVIVFVRTRNRVAKLVRLFD----NAIELRGDLPQSVRNRNIDAFREGEYD 268 (337)
T ss_dssp GGGEEEEEEECSSSSHHHHHHHHTC-CCSSEEEECSCHHHHHHHHTTCT----TEEEECTTSCHHHHHHHHHHHHTTSCS
T ss_pred cCCceEEEEEeChHHHHHHHHHHhC-CCCcEEEEEcCHHHHHHHHHHhh----hhhhhcCCCCHHHHHHHHHHHHcCCCc
Confidence 4455555554444334444566543 67889999999999999999886 478899999999999999999999999
Q ss_pred EEEEEeecccHHHHHHHHHhcCCcEEEeeCCCChHHHHHHHHHhhCCC
Q psy437 87 VGHWTVVSKECDSVAAALAQERINAISYHAGLADKLRNEVQMKWISNK 134 (184)
Q Consensus 87 vlVaT~tr~~~e~~a~gL~~~gi~~~vih~~~p~~~r~~~~~~f~~~~ 134 (184)
+||||+ .+++|+|.++++ .|+|+++|.+...|+|+..|.|.
T Consensus 269 vlv~T~------~~~~Gid~~~~~-~Vi~~~~~~s~~~~~Q~~GR~gR 309 (337)
T 2z0m_A 269 MLITTD------VASRGLDIPLVE-KVINFDAPQDLRTYIHRIGRTGR 309 (337)
T ss_dssp EEEECH------HHHTTCCCCCBS-EEEESSCCSSHHHHHHHHTTBCG
T ss_pred EEEEcC------ccccCCCccCCC-EEEEecCCCCHHHhhHhcCcccc
Confidence 999999 888999999999 99999999999999999976654
No 40
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=99.56 E-value=1.8e-14 Score=120.25 Aligned_cols=109 Identities=12% Similarity=0.162 Sum_probs=96.5
Q ss_pred ChHHHHHHHHHhh---cCCCcEEEEeccHHHHHHHHHHHHhCCCeeEEecC--------CCCHHHHHHHHHHHhccCceE
Q psy437 19 NVLKEVISLIKAK---YSGQSGIVYCLTRKECDSVAAALAQERINAISYHA--------GLADKLRNEVQMKWISNKVHV 87 (184)
Q Consensus 19 ~k~~~L~~~l~~~---~~~~~~IIf~~tr~~~e~la~~L~~~gi~~~~~hg--------~l~~~~R~~~~~~f~~g~~~v 87 (184)
.|...|.++|.+. ..+.++||||+++..++.+++.|...|+++..+|| +|++++|..++++|.+|+.+|
T Consensus 343 ~k~~~l~~~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~~~~~~~~~r~~~~~~F~~~~~~v 422 (494)
T 1wp9_A 343 PKMDKLKEIIREQLQRKQNSKIIVFTNYRETAKKIVNELVKDGIKAKRFVGQASKENDRGLSQREQKLILDEFARGEFNV 422 (494)
T ss_dssp HHHHHHHHHHHHHHHHCTTCCEEEECSCHHHHHHHHHHHHHTTCCEEEECCSSCC-------CCHHHHHHHHHHHTSCSE
T ss_pred hHHHHHHHHHHHHhccCCCCeEEEEEccHHHHHHHHHHHHHcCCCcEEEeccccccccccCCHHHHHHHHHHHhcCCceE
Confidence 4788888888653 36789999999999999999999999999999999 999999999999999999999
Q ss_pred EEEEeecccHHHHHHHHHhcCCcEEEeeCCCChHHHHHHHHHhhCCC
Q psy437 88 GHWTVVSKECDSVAAALAQERINAISYHAGLADKLRNEVQMKWISNK 134 (184)
Q Consensus 88 lVaT~tr~~~e~~a~gL~~~gi~~~vih~~~p~~~r~~~~~~f~~~~ 134 (184)
||+|+ .++.|+|.++++ .|+++++|.+...|+|+..|.|.
T Consensus 423 Lv~T~------~~~~Gldl~~~~-~Vi~~d~~~~~~~~~Qr~GR~~R 462 (494)
T 1wp9_A 423 LVATS------VGEEGLDVPEVD-LVVFYEPVPSAIRSIQRRGRTGR 462 (494)
T ss_dssp EEECG------GGGGGGGSTTCC-EEEESSCCHHHHHHHHHHTTSCS
T ss_pred EEECC------ccccCCCchhCC-EEEEeCCCCCHHHHHHHHhhccC
Confidence 99999 668899999999 99999999999999999976543
No 41
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A*
Probab=99.55 E-value=4.5e-15 Score=130.61 Aligned_cols=122 Identities=12% Similarity=0.077 Sum_probs=98.5
Q ss_pred CCCCCCeEEEE-----EEccChHHHHHHHHHhhc-CCCcEEEEeccHHHHHHHHHHHHhCCCeeEEecCCCCHHHHHHHH
Q psy437 4 SFNRANLKYEI-----LPKKNVLKEVISLIKAKY-SGQSGIVYCLTRKECDSVAAALAQERINAISYHAGLADKLRNEVQ 77 (184)
Q Consensus 4 s~~R~Nl~y~v-----~~~~~k~~~L~~~l~~~~-~~~~~IIf~~tr~~~e~la~~L~~~gi~~~~~hg~l~~~~R~~~~ 77 (184)
|.+||+..... .....|...|.+.+.+.+ .+.|+||||+|++.++.++..|.+.|+++.++||+..+.++..+.
T Consensus 438 Ptnkp~~R~d~~d~vy~t~~eK~~al~~~I~~~~~~gqpVLVFt~S~e~sE~Ls~~L~~~Gi~~~vLhgkq~~rE~~ii~ 517 (822)
T 3jux_A 438 PTHKPMIRKDHDDLVFRTQKEKYEKIVEEIEKRYKKGQPVLVGTTSIEKSELLSSMLKKKGIPHQVLNAKYHEKEAEIVA 517 (822)
T ss_dssp CCSSCCCCEECCCEEESSHHHHHHHHHHHHHHHHHHTCCEEEEESSHHHHHHHHHHHHTTTCCCEEECSCHHHHHHHHHH
T ss_pred CCCCCcceeecCcEEEecHHHHHHHHHHHHHHHhhCCCCEEEEECCHHHHHHHHHHHHHCCCCEEEeeCCchHHHHHHHH
Confidence 56777654332 122358888888886532 567999999999999999999999999999999996666666666
Q ss_pred HHHhccCceEEEEEeecccHHHHHHHHHhc--------CCcEEEeeCCCChHHHHHHHHHhhCCC
Q psy437 78 MKWISNKVHVGHWTVVSKECDSVAAALAQE--------RINAISYHAGLADKLRNEVQMKWISNK 134 (184)
Q Consensus 78 ~~f~~g~~~vlVaT~tr~~~e~~a~gL~~~--------gi~~~vih~~~p~~~r~~~~~~f~~~~ 134 (184)
++++.| .|+|||+ .++||+|++ |.. +|||+++|.+.|.|+|+.+++|.
T Consensus 518 ~ag~~g--~VtVATd------mAgRGtDI~lg~~V~~~Ggl-hVInte~Pes~r~y~qriGRTGR 573 (822)
T 3jux_A 518 KAGQKG--MVTIATN------MAGRGTDIKLGPGVAELGGL-CIIGTERHESRRIDNQLRGRAGR 573 (822)
T ss_dssp HHHSTT--CEEEEET------TTTTTCCCCCCTTTTTTTSC-EEEESSCCSSHHHHHHHHTTSSC
T ss_pred hCCCCC--eEEEEcc------hhhCCcCccCCcchhhcCCC-EEEecCCCCCHHHHHHhhCcccc
Confidence 666655 6999999 889999997 776 99999999999999999987654
No 42
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=99.55 E-value=8.9e-15 Score=117.84 Aligned_cols=100 Identities=17% Similarity=0.108 Sum_probs=86.4
Q ss_pred HHHHHHHHHhc--cCceEEEEEeecccHHHHHHHHHhcCCcEEEeeCCCChHHHHHHHHHhhCCCceEEEE-------Ee
Q psy437 72 LRNEVQMKWIS--NKVHVGHWTVVSKECDSVAAALAQERINAISYHAGLADKLRNEVQMKWISNKVHLYNV-------WK 142 (184)
Q Consensus 72 ~R~~~~~~f~~--g~~~vlVaT~tr~~~e~~a~gL~~~gi~~~vih~~~p~~~r~~~~~~f~~~~~~v~va-------~D 142 (184)
+|...+..+.. ...++||+|+++..++.++..|...|+.+.++|+++|+..|..+.+.|++|+..|+|| +|
T Consensus 14 ~K~~~L~~ll~~~~~~~~LVF~~t~~~~~~l~~~L~~~g~~~~~lhg~l~~~~r~~~~~~f~~g~~~vLVaT~va~~Gid 93 (300)
T 3i32_A 14 GRLEVLSDLLYVASPDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDMSQGERERVMGAFRQGEVRVLVATDVAARGLD 93 (300)
T ss_dssp SHHHHHHHHHHHHCCSSEEEECSSHHHHHHHHHHHHTTTCCEEEECSCCCTHHHHHHHHHHHHTSCCEEEECSTTTCSTT
T ss_pred HHHHHHHHHHHhcCCCCEEEEECCHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHhhcCCceEEEEechhhcCcc
Confidence 34444444432 2457999999999999999999999999999999999999999999999999999999 59
Q ss_pred cCCccEEEecCCCCCccccccccccccCCcc
Q psy437 143 IQWKRIIWIHSLVLIKPDYLPPILDLRLGRE 173 (184)
Q Consensus 143 ~~~vr~v~~~~~p~~~e~y~~~i~~~~~~r~ 173 (184)
+|++++||++++|.+.+.|+|+++ |+||.
T Consensus 94 i~~v~~VI~~d~p~s~~~y~Qr~G--RagR~ 122 (300)
T 3i32_A 94 IPQVDLVVHYRMPDRAEAYQHRSG--RTGRA 122 (300)
T ss_dssp CCCCSEEEESSCCSSTTHHHHHHT--CCC--
T ss_pred ccceeEEEEcCCCCCHHHHHHHcc--CcCcC
Confidence 999999999999999999999996 55554
No 43
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=99.55 E-value=6.7e-15 Score=122.50 Aligned_cols=112 Identities=11% Similarity=0.090 Sum_probs=95.3
Q ss_pred CCCeEEEEEEccChHHHHHHHHHhhcCCCcEEEEeccHHHHHHHHHHHHhCCCeeE-EecCCCCHHHHHHHHHHHhccCc
Q psy437 7 RANLKYEILPKKNVLKEVISLIKAKYSGQSGIVYCLTRKECDSVAAALAQERINAI-SYHAGLADKLRNEVQMKWISNKV 85 (184)
Q Consensus 7 R~Nl~y~v~~~~~k~~~L~~~l~~~~~~~~~IIf~~tr~~~e~la~~L~~~gi~~~-~~hg~l~~~~R~~~~~~f~~g~~ 85 (184)
.+|+...+... .+...|.+++.. .+.++||||+|+..++.++..|...|+++. .+||+ +|. ++.|++|+.
T Consensus 228 ~~~i~~~~~~~-~~~~~l~~~l~~--~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~h~~----~r~--~~~f~~g~~ 298 (414)
T 3oiy_A 228 ARNITHVRISS-RSKEKLVELLEI--FRDGILIFAQTEEEGKELYEYLKRFKFNVGETWSEF----EKN--FEDFKVGKI 298 (414)
T ss_dssp CCSEEEEEESS-CCHHHHHHHHHH--HCSSEEEEESSHHHHHHHHHHHHHTTCCEEESSSCH----HHH--HHHHHTTSC
T ss_pred cccchheeecc-CHHHHHHHHHHH--cCCCEEEEECCHHHHHHHHHHHHHcCCceehhhcCc----chH--HHHHhCCCC
Confidence 45565544444 567788888876 357999999999999999999999999998 99985 444 999999999
Q ss_pred eEEEE----EeecccHHHHHHHHHhcC-CcEEEeeCCCC--hHHHHHHHHHhhCCC
Q psy437 86 HVGHW----TVVSKECDSVAAALAQER-INAISYHAGLA--DKLRNEVQMKWISNK 134 (184)
Q Consensus 86 ~vlVa----T~tr~~~e~~a~gL~~~g-i~~~vih~~~p--~~~r~~~~~~f~~~~ 134 (184)
+|||| |+ .+++|+|.++ ++ +|||+|+| .+...|+|+.+|.|.
T Consensus 299 ~vLvat~s~T~------~~~~GiDip~~v~-~VI~~~~p~~~~~~~y~qr~GR~gR 347 (414)
T 3oiy_A 299 NILIGVQAYYG------KLTRGVDLPERIK-YVIFWGTPSGPDVYTYIQASGRSSR 347 (414)
T ss_dssp SEEEEECCTTC------CCCCCCCCTTTCC-EEEEESCCTTTCHHHHHHHHGGGCC
T ss_pred eEEEEecCcCc------hhhccCccccccC-EEEEECCCCCCCHHHHHHHhCcccc
Confidence 99999 88 6688999999 99 99999999 899999999987765
No 44
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=99.55 E-value=1.4e-14 Score=121.91 Aligned_cols=165 Identities=11% Similarity=0.145 Sum_probs=114.6
Q ss_pred CCeEEEEEEccCh------HHHHHHHHHhh--cCCCcEEEEeccHH-HHHHHHHHHHhC--------------CCeeEEe
Q psy437 8 ANLKYEILPKKNV------LKEVISLIKAK--YSGQSGIVYCLTRK-ECDSVAAALAQE--------------RINAISY 64 (184)
Q Consensus 8 ~Nl~y~v~~~~~k------~~~L~~~l~~~--~~~~~~IIf~~tr~-~~e~la~~L~~~--------------gi~~~~~ 64 (184)
.++.|.|..+.+. ...+..++... .+..+.+.|+.|-. ..+.++..+-.. ++.-.++
T Consensus 202 ~~~~~lVlDEah~~~~~gf~~~~~~i~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~i~~~~~ 281 (434)
T 2db3_A 202 EDTRFVVLDEADRMLDMGFSEDMRRIMTHVTMRPEHQTLMFSATFPEEIQRMAGEFLKNYVFVAIGIVGGACSDVKQTIY 281 (434)
T ss_dssp TTCCEEEEETHHHHTSTTTHHHHHHHHHCTTSCSSCEEEEEESCCCHHHHHHHHTTCSSCEEEEESSTTCCCTTEEEEEE
T ss_pred ccCCeEEEccHhhhhccCcHHHHHHHHHhcCCCCCceEEEEeccCCHHHHHHHHHhccCCEEEEeccccccccccceEEE
Confidence 4566777765432 23344444321 13456788888753 233333332111 1111112
Q ss_pred cCCCCHHHHHHHHHHHhccCceEEEEEeecccHHHHHHHHHhcCCcEEEeeCCCChHHHHHHHHHhhCCCceEEEE----
Q psy437 65 HAGLADKLRNEVQMKWISNKVHVGHWTVVSKECDSVAAALAQERINAISYHAGLADKLRNEVQMKWISNKVHLYNV---- 140 (184)
Q Consensus 65 hg~l~~~~R~~~~~~f~~g~~~vlVaT~tr~~~e~~a~gL~~~gi~~~vih~~~p~~~r~~~~~~f~~~~~~v~va---- 140 (184)
.-. ....+..+.+.+.....++||++++++.|+.++..|...|+++..+|+++++..|..+.+.|++|+..|+||
T Consensus 282 ~~~-~~~k~~~l~~~l~~~~~~~lVF~~t~~~a~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT~v~ 360 (434)
T 2db3_A 282 EVN-KYAKRSKLIEILSEQADGTIVFVETKRGADFLASFLSEKEFPTTSIHGDRLQSQREQALRDFKNGSMKVLIATSVA 360 (434)
T ss_dssp ECC-GGGHHHHHHHHHHHCCTTEEEECSSHHHHHHHHHHHHHTTCCEEEESTTSCHHHHHHHHHHHHTSSCSEEEECGGG
T ss_pred EeC-cHHHHHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEchhh
Confidence 111 122334444444444445999999999999999999999999999999999999999999999999999999
Q ss_pred ---EecCCccEEEecCCCCCcccccccccc-ccCCcc
Q psy437 141 ---WKIQWKRIIWIHSLVLIKPDYLPPILD-LRLGRE 173 (184)
Q Consensus 141 ---~D~~~vr~v~~~~~p~~~e~y~~~i~~-~~~~r~ 173 (184)
+|+|++++|||+++|.+.++|+|+++| +|.|+.
T Consensus 361 ~rGlDi~~v~~VI~~d~p~~~~~y~qriGR~gR~g~~ 397 (434)
T 2db3_A 361 SRGLDIKNIKHVINYDMPSKIDDYVHRIGRTGRVGNN 397 (434)
T ss_dssp TSSCCCTTCCEEEESSCCSSHHHHHHHHTTSSCTTCC
T ss_pred hCCCCcccCCEEEEECCCCCHHHHHHHhcccccCCCC
Confidence 699999999999999999999999965 244443
No 45
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=99.54 E-value=6.5e-15 Score=132.40 Aligned_cols=108 Identities=8% Similarity=0.105 Sum_probs=62.2
Q ss_pred ChHHHHHHHHHhh---cCCCcEEEEeccHHHHHHHHHHHHhC------------CCeeEEecCCCCHHHHHHHHHHHhc-
Q psy437 19 NVLKEVISLIKAK---YSGQSGIVYCLTRKECDSVAAALAQE------------RINAISYHAGLADKLRNEVQMKWIS- 82 (184)
Q Consensus 19 ~k~~~L~~~l~~~---~~~~~~IIf~~tr~~~e~la~~L~~~------------gi~~~~~hg~l~~~~R~~~~~~f~~- 82 (184)
.|+..|.++|.+. ..+.++||||+++..++.++..|.+. |.....+||+|++.+|..++++|++
T Consensus 613 ~K~~~L~~lL~~~~~~~~~~kvLIF~~~~~~~~~L~~~L~~~~~~~~~~~~~l~G~~~~~~hg~~~~~eR~~~l~~F~~~ 692 (797)
T 4a2q_A 613 PKLEELVCILDDAYRYNPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTS 692 (797)
T ss_dssp HHHHHHHHHHHHHHHHCSSCCEEEEESSHHHHHHHHHHHHTCSTTCSCCCEEC---------------------------
T ss_pred hHHHHHHHHHHHHhccCCCCeEEEEECcHHHHHHHHHHHHhCcccccccceEEEecCCcccCCCCCHHHHHHHHHHhhcc
Confidence 4788888888642 35689999999999999999999863 5566778999999999999999999
Q ss_pred cCceEEEEEeecccHHHHHHHHHhcCCcEEEeeCCCChHHHHHHHHHhhCCC
Q psy437 83 NKVHVGHWTVVSKECDSVAAALAQERINAISYHAGLADKLRNEVQMKWISNK 134 (184)
Q Consensus 83 g~~~vlVaT~tr~~~e~~a~gL~~~gi~~~vih~~~p~~~r~~~~~~f~~~~ 134 (184)
|+.+|||||+ .+++|||.++++ +|||+|+|.+...|+|+.+| |.
T Consensus 693 g~~~vLVaT~------~~~~GIDlp~v~-~VI~yd~p~s~~~~iQr~GR-GR 736 (797)
T 4a2q_A 693 KDNRLLIATS------VADEGIDIVQCN-LVVLYEYSGNVTKMIQVRGR-GR 736 (797)
T ss_dssp -CCSEEEEEC------C-------CCCS-EEEEESCCSCHHHHHTC------
T ss_pred CCceEEEEcC------chhcCCCchhCC-EEEEeCCCCCHHHHHHhcCC-CC
Confidence 9999999999 778999999999 99999999999999999988 54
No 46
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=99.53 E-value=5.4e-15 Score=135.01 Aligned_cols=108 Identities=8% Similarity=0.105 Sum_probs=63.9
Q ss_pred ChHHHHHHHHHhh---cCCCcEEEEeccHHHHHHHHHHHHhC------------CCeeEEecCCCCHHHHHHHHHHHhc-
Q psy437 19 NVLKEVISLIKAK---YSGQSGIVYCLTRKECDSVAAALAQE------------RINAISYHAGLADKLRNEVQMKWIS- 82 (184)
Q Consensus 19 ~k~~~L~~~l~~~---~~~~~~IIf~~tr~~~e~la~~L~~~------------gi~~~~~hg~l~~~~R~~~~~~f~~- 82 (184)
.|...|.++|.+. ..+.++||||+|++.++.++..|.+. |.....+||+|++.+|..++++|++
T Consensus 613 ~K~~~L~~lL~~~~~~~~~~rvLIF~~t~~~ae~L~~~L~~~~~l~~ik~~~l~G~~~~~~hg~m~~~eR~~il~~Fr~~ 692 (936)
T 4a2w_A 613 PKLEELVCILDDAYRYNPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTS 692 (936)
T ss_dssp HHHHHHHHHHHHTTTSCTTCCEEEEESSHHHHHHHHHHHHHCSTTSSCCCEEC---------------------------
T ss_pred HHHHHHHHHHHHHhccCCCCeEEEEeCCHHHHHHHHHHHhhCccccccceeEEecCCCcccCCCCCHHHHHHHHHHhhcc
Confidence 4888888888753 25678999999999999999999986 5566677999999999999999999
Q ss_pred cCceEEEEEeecccHHHHHHHHHhcCCcEEEeeCCCChHHHHHHHHHhhCCC
Q psy437 83 NKVHVGHWTVVSKECDSVAAALAQERINAISYHAGLADKLRNEVQMKWISNK 134 (184)
Q Consensus 83 g~~~vlVaT~tr~~~e~~a~gL~~~gi~~~vih~~~p~~~r~~~~~~f~~~~ 134 (184)
|+.+|||||+ .+++|||.++++ .|||+|+|.+...|+|+.+| |.
T Consensus 693 g~~~VLVaT~------~~~eGIDlp~v~-~VI~yD~p~s~~~~iQr~GR-GR 736 (936)
T 4a2w_A 693 KDNRLLIATS------VADEGIDIVQCN-LVVLYEYSGNVTKMIQVRGR-GR 736 (936)
T ss_dssp -CCSEEEEEC------C------CCCCS-EEEEESCCSCSHHHHCC------
T ss_pred CCeeEEEEeC------chhcCCcchhCC-EEEEeCCCCCHHHHHHhcCC-CC
Confidence 9999999999 778999999999 99999999999999999987 53
No 47
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=99.53 E-value=6.5e-16 Score=126.93 Aligned_cols=107 Identities=12% Similarity=0.210 Sum_probs=0.0
Q ss_pred hHHHHHHHHHhhcCCCcEEEEeccHHHHHHHHHHHHhCCCeeEEecCCCCHHHHHHHHHHHhccCceEEEEEeecccHHH
Q psy437 20 VLKEVISLIKAKYSGQSGIVYCLTRKECDSVAAALAQERINAISYHAGLADKLRNEVQMKWISNKVHVGHWTVVSKECDS 99 (184)
Q Consensus 20 k~~~L~~~l~~~~~~~~~IIf~~tr~~~e~la~~L~~~gi~~~~~hg~l~~~~R~~~~~~f~~g~~~vlVaT~tr~~~e~ 99 (184)
+...+.+++... ...++||||+|++.++.+++.|.+.++.+..+||++++++|..+++.|++|+.+|||||+ .
T Consensus 246 ~~~~l~~~~~~~-~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~------~ 318 (394)
T 1fuu_A 246 KYECLTDLYDSI-SVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTD------L 318 (394)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHhcC-CCCcEEEEECCHHHHHHHHHHHHHcCCeEEEeeCCCCHHHHHHHHHHHHCCCCcEEEECC------h
Confidence 566666666543 567899999999999999999999999999999999999999999999999999999999 7
Q ss_pred HHHHHHhcCCcEEEeeCCCChHHHHHHHHHhhCCC
Q psy437 100 VAAALAQERINAISYHAGLADKLRNEVQMKWISNK 134 (184)
Q Consensus 100 ~a~gL~~~gi~~~vih~~~p~~~r~~~~~~f~~~~ 134 (184)
+++|+|.++++ .|+|+++|.+...|+|+..|.|.
T Consensus 319 ~~~Gldi~~~~-~Vi~~~~p~s~~~~~Qr~GR~~R 352 (394)
T 1fuu_A 319 LARGIDVQQVS-LVINYDLPANKENYIHRIGRGGR 352 (394)
T ss_dssp -----------------------------------
T ss_pred hhcCCCcccCC-EEEEeCCCCCHHHHHHHcCcccC
Confidence 89999999999 99999999999999999976543
No 48
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=99.52 E-value=1e-14 Score=122.85 Aligned_cols=118 Identities=9% Similarity=-0.019 Sum_probs=94.8
Q ss_pred HHHHHHHHHhhcCCCcEEEEeccHHHHHHHHHHHHhCCCeeEEecCCCCHHHHHHHHHHHhccCceEEEEEeecccHHHH
Q psy437 21 LKEVISLIKAKYSGQSGIVYCLTRKECDSVAAALAQERINAISYHAGLADKLRNEVQMKWISNKVHVGHWTVVSKECDSV 100 (184)
Q Consensus 21 ~~~L~~~l~~~~~~~~~IIf~~tr~~~e~la~~L~~~gi~~~~~hg~l~~~~R~~~~~~f~~g~~~vlVaT~tr~~~e~~ 100 (184)
...+.+.+.+ .++++||||+|++.++.+++.|.+.++++..+||+ +|.+++++|++|+.+|||||+ .+
T Consensus 160 ~~~~~~~l~~--~~~~~lVF~~~~~~~~~l~~~L~~~~~~v~~lhg~----~r~~~~~~f~~g~~~vLVaT~------v~ 227 (431)
T 2v6i_A 160 WNSGYEWITE--FDGRTVWFVHSIKQGAEIGTCLQKAGKKVLYLNRK----TFESEYPKCKSEKWDFVITTD------IS 227 (431)
T ss_dssp CSSCCHHHHS--CSSCEEEECSSHHHHHHHHHHHHHTTCCEEEESTT----THHHHTTHHHHSCCSEEEECG------GG
T ss_pred HHHHHHHHHc--CCCCEEEEeCCHHHHHHHHHHHHHcCCeEEEeCCc----cHHHHHHhhcCCCCeEEEECc------hH
Confidence 3444556655 46789999999999999999999999999999997 688999999999999999999 77
Q ss_pred HHHHHhcCCcEEEeeCCCChHHHHHHHHHhhCCCceEEEEEecCCccEEEecCCCCCccccccccccccCCcc
Q psy437 101 AAALAQERINAISYHAGLADKLRNEVQMKWISNKVHLYNVWKIQWKRIIWIHSLVLIKPDYLPPILDLRLGRE 173 (184)
Q Consensus 101 a~gL~~~gi~~~vih~~~p~~~r~~~~~~f~~~~~~v~va~D~~~vr~v~~~~~p~~~e~y~~~i~~~~~~r~ 173 (184)
++|+|.+ +. .|++++. .....+| +.+.|++++.|.+..+|+|++ +|+||.
T Consensus 228 e~GiDip-~~-~VI~~g~-----------------~~~~v~d--~~~~vi~~~~p~~~~~~~Qr~--GR~GR~ 277 (431)
T 2v6i_A 228 EMGANFK-AD-RVIDPRK-----------------TIKPILL--DGRVSMQGPIAITPASAAQRR--GRIGRN 277 (431)
T ss_dssp GTSCCCC-CS-EEEECCE-----------------EEEEEEE--TTEEEEEEEEECCHHHHHHHH--TTSSCC
T ss_pred HcCcccC-Cc-EEEecCc-----------------cccceec--ccceeecccccCCHHHHHHhh--hccCCC
Confidence 8999998 76 7777762 2222246 567888888888888888888 466664
No 49
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=99.52 E-value=5.2e-15 Score=124.92 Aligned_cols=117 Identities=11% Similarity=-0.012 Sum_probs=83.5
Q ss_pred HHHHHHhhcCCCcEEEEeccHHHHHHHHHHHHhCCCeeEEecCCCCHHHHHHHHHHHhccCceEEEEEeecccHHHHHHH
Q psy437 24 VISLIKAKYSGQSGIVYCLTRKECDSVAAALAQERINAISYHAGLADKLRNEVQMKWISNKVHVGHWTVVSKECDSVAAA 103 (184)
Q Consensus 24 L~~~l~~~~~~~~~IIf~~tr~~~e~la~~L~~~gi~~~~~hg~l~~~~R~~~~~~f~~g~~~vlVaT~tr~~~e~~a~g 103 (184)
+...+.+ .+.++||||+|++.++.+++.|.+.|+++..+|| ++|..+++.|++|+.+|||||+ .+++|
T Consensus 169 ~~~~l~~--~~~~~lVF~~s~~~a~~l~~~L~~~~~~v~~lhg----~~R~~~~~~F~~g~~~vLVaT~------v~e~G 236 (440)
T 1yks_A 169 GHDWILA--DKRPTAWFLPSIRAANVMAASLRKAGKSVVVLNR----KTFEREYPTIKQKKPDFILATD------IAEMG 236 (440)
T ss_dssp SCHHHHH--CCSCEEEECSCHHHHHHHHHHHHHTTCCEEECCS----SSCC--------CCCSEEEESS------STTCC
T ss_pred HHHHHHh--cCCCEEEEeCCHHHHHHHHHHHHHcCCCEEEecc----hhHHHHHhhhcCCCceEEEECC------hhhee
Confidence 3344544 4679999999999999999999999999999999 4688999999999999999999 77899
Q ss_pred HHhcCCcEEEeeCCCChHHHHHHHHHhhCCCceEEEEEecCCccEEEecCCCCCccccccccccccCCcc
Q psy437 104 LAQERINAISYHAGLADKLRNEVQMKWISNKVHLYNVWKIQWKRIIWIHSLVLIKPDYLPPILDLRLGRE 173 (184)
Q Consensus 104 L~~~gi~~~vih~~~p~~~r~~~~~~f~~~~~~v~va~D~~~vr~v~~~~~p~~~e~y~~~i~~~~~~r~ 173 (184)
+|.+ ++ .|||.|. .+--.++.+.-+.+++++.|.+..+|+|+++ |+||.
T Consensus 237 iDip-v~-~VI~~g~-----------------~~~pv~~~~~~~~vi~~~~p~~~~~~~Qr~G--R~GR~ 285 (440)
T 1yks_A 237 ANLC-VE-RVLDCRT-----------------AFKPVLVDEGRKVAIKGPLRISASSAAQRRG--RIGRN 285 (440)
T ss_dssp TTCC-CS-EEEECCE-----------------EEEEEEETTTTEEEEEEEEECCHHHHHHHHT--TSSCC
T ss_pred eccC-ce-EEEeCCc-----------------cceeeecccccceeeccccccCHHHHHHhcc--ccCCC
Confidence 9999 99 8888652 1111133333367777777777777777773 55553
No 50
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=99.52 E-value=2.7e-13 Score=111.26 Aligned_cols=85 Identities=18% Similarity=0.223 Sum_probs=77.7
Q ss_pred EEEEeecccHHHHHHHHHhcCCcEEEeeCCCChHHHHHHHHHhhCCCceEEEE-------EecCCccEEEecCCCCCccc
Q psy437 88 GHWTVVSKECDSVAAALAQERINAISYHAGLADKLRNEVQMKWISNKVHLYNV-------WKIQWKRIIWIHSLVLIKPD 160 (184)
Q Consensus 88 lVaT~tr~~~e~~a~gL~~~gi~~~vih~~~p~~~r~~~~~~f~~~~~~v~va-------~D~~~vr~v~~~~~p~~~e~ 160 (184)
||+++++..++.++..|...|+.+..+|+++|+..|..+.+.|++|+..|+++ +|+|++++|+++++|.+...
T Consensus 254 lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gidi~~~~~Vi~~~~p~s~~~ 333 (391)
T 1xti_A 254 VIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIAFNYDMPEDSDT 333 (391)
T ss_dssp EEECSCHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTCCSEEEESCCCSSCBCCTTEEEEEESSCCSSHHH
T ss_pred EEEeCcHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhcCCCcEEEECChhhcCCCcccCCEEEEeCCCCCHHH
Confidence 66666667899999999999999999999999999999999999999999999 69999999999999999999
Q ss_pred cccccccccCCccc
Q psy437 161 YLPPILDLRLGRED 174 (184)
Q Consensus 161 y~~~i~~~~~~r~~ 174 (184)
|+|+++ |+||.+
T Consensus 334 ~~Qr~G--R~~R~g 345 (391)
T 1xti_A 334 YLHRVA--RAGRFG 345 (391)
T ss_dssp HHHHHC--BCSSSC
T ss_pred HHHhcc--cccCCC
Confidence 999995 777753
No 51
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=99.51 E-value=1.4e-14 Score=127.09 Aligned_cols=120 Identities=11% Similarity=-0.036 Sum_probs=97.9
Q ss_pred HHHHHHHhhcCCCcEEEEeccHHHHHHHHHHHHhCCCeeEEecCCCCHHHHHHHHHHHhccCceEEEEEeecccHHHHHH
Q psy437 23 EVISLIKAKYSGQSGIVYCLTRKECDSVAAALAQERINAISYHAGLADKLRNEVQMKWISNKVHVGHWTVVSKECDSVAA 102 (184)
Q Consensus 23 ~L~~~l~~~~~~~~~IIf~~tr~~~e~la~~L~~~gi~~~~~hg~l~~~~R~~~~~~f~~g~~~vlVaT~tr~~~e~~a~ 102 (184)
.+...+.+ ...++||||+|++.|+.+++.|.+.|+++..+||+ +|.+++++|++|+.+|||||+ .+++
T Consensus 346 ~ll~~l~~--~~~~~LVF~~s~~~a~~l~~~L~~~g~~v~~lhg~----~R~~~l~~F~~g~~~VLVaTd------v~~r 413 (618)
T 2whx_A 346 TGFDWITD--YQGKTVWFVPSIKAGNDIANCLRKSGKRVIQLSRK----TFDTEYPKTKLTDWDFVVTTD------ISEM 413 (618)
T ss_dssp SSCHHHHH--CCSCEEEECSSHHHHHHHHHHHHHTTCCEEEECTT----THHHHTTHHHHSCCSEEEECG------GGGT
T ss_pred HHHHHHHh--CCCCEEEEECChhHHHHHHHHHHHcCCcEEEEChH----HHHHHHHhhcCCCcEEEEECc------HHHc
Confidence 34445544 46799999999999999999999999999999985 788999999999999999999 8899
Q ss_pred HHHhcCCcEEEeeCCCChHHHHHHHHHhhCCCceEEEEEecCCccEEEecCCCCCccccccccccccCCccc
Q psy437 103 ALAQERINAISYHAGLADKLRNEVQMKWISNKVHLYNVWKIQWKRIIWIHSLVLIKPDYLPPILDLRLGRED 174 (184)
Q Consensus 103 gL~~~gi~~~vih~~~p~~~r~~~~~~f~~~~~~v~va~D~~~vr~v~~~~~p~~~e~y~~~i~~~~~~r~~ 174 (184)
|+|.+ ++ .||+++++.+ +++ .|..+-+.+++++.|.+.++|+|+++ |+||.+
T Consensus 414 GiDi~-v~-~VId~g~~~~--------------P~~--~~~~~~~~~i~~d~P~s~~~yiQR~G--RaGR~g 465 (618)
T 2whx_A 414 GANFR-AG-RVIDPRRCLK--------------PVI--LTDGPERVILAGPIPVTPASAAQRRG--RIGRNP 465 (618)
T ss_dssp TCCCC-CS-EEEECCEEEE--------------EEE--ECSSSCEEEEEEEEECCHHHHHHHHT--TSSCCT
T ss_pred CcccC-ce-EEEECcceec--------------cee--cccCCCceEEcccccCCHHHHHHhcc--ccCCCC
Confidence 99996 98 8988873211 111 24555578899999999999999994 666653
No 52
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=99.51 E-value=1.5e-14 Score=128.87 Aligned_cols=123 Identities=15% Similarity=0.072 Sum_probs=100.2
Q ss_pred CCCCCCeEEE-----EEEccChHHHHHHHHHhh-cCCCcEEEEeccHHHHHHHHHHHHhCCCeeEEecCCCCHHHHHHHH
Q psy437 4 SFNRANLKYE-----ILPKKNVLKEVISLIKAK-YSGQSGIVYCLTRKECDSVAAALAQERINAISYHAGLADKLRNEVQ 77 (184)
Q Consensus 4 s~~R~Nl~y~-----v~~~~~k~~~L~~~l~~~-~~~~~~IIf~~tr~~~e~la~~L~~~gi~~~~~hg~l~~~~R~~~~ 77 (184)
|.+||...-. ......|...|.+.+... ..+.|+||||+|++.++.++..|.+.|+++.++||++++.++..+.
T Consensus 405 Ptn~p~~R~d~~d~v~~~~~~K~~al~~~i~~~~~~gqpvLVft~sie~se~Ls~~L~~~gi~~~vLnak~~~rEa~iia 484 (853)
T 2fsf_A 405 PTNRPMIRKDLPDLVYMTEAEKIQAIIEDIKERTAKGQPVLVGTISIEKSELVSNELTKAGIKHNVLNAKFHANEAAIVA 484 (853)
T ss_dssp CCSSCCCCEECCCEEESSHHHHHHHHHHHHHHHHTTTCCEEEEESSHHHHHHHHHHHHHTTCCCEECCTTCHHHHHHHHH
T ss_pred CCCCCceeecCCcEEEeCHHHHHHHHHHHHHHHhcCCCCEEEEECcHHHHHHHHHHHHHCCCCEEEecCChhHHHHHHHH
Confidence 4567765322 223346899999888653 2567899999999999999999999999999999999988888888
Q ss_pred HHHhccCceEEEEEeecccHHHHHHHHHhcCC--------------------------------c----EEEeeCCCChH
Q psy437 78 MKWISNKVHVGHWTVVSKECDSVAAALAQERI--------------------------------N----AISYHAGLADK 121 (184)
Q Consensus 78 ~~f~~g~~~vlVaT~tr~~~e~~a~gL~~~gi--------------------------------~----~~vih~~~p~~ 121 (184)
++|+.| .|+|||+ .++||+|++.. . .+||++++|.+
T Consensus 485 ~agr~G--~VtIATn------mAgRGtDI~l~gn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGl~VI~te~pes 556 (853)
T 2fsf_A 485 QAGYPA--AVTIATN------MAGRGTDIVLGGSWQAEVAALENPTAEQIEKIKADWQVRHDAVLEAGGLHIIGTERHES 556 (853)
T ss_dssp TTTSTT--CEEEEES------CCSSCSCCCTTCCHHHHHHHCSSCCSSHHHHHHHHHHHHHHHHHHTTSEEEEESSCCSS
T ss_pred hcCCCC--eEEEecc------cccCCcCccCCCchHhhhhhcccchhHHHHHHHHHhhhhhhHHHhcCCcEEEEccCCCC
Confidence 999887 6999999 77889888763 1 28999999999
Q ss_pred HHHHHHHHhhCCC
Q psy437 122 LRNEVQMKWISNK 134 (184)
Q Consensus 122 ~r~~~~~~f~~~~ 134 (184)
.|.|+|+.+++|.
T Consensus 557 ~riy~qr~GRTGR 569 (853)
T 2fsf_A 557 RRIDNQLRGRSGR 569 (853)
T ss_dssp HHHHHHHHTTSSG
T ss_pred HHHHHhhcccccc
Confidence 9999999877663
No 53
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=99.50 E-value=2.3e-15 Score=129.01 Aligned_cols=108 Identities=9% Similarity=0.151 Sum_probs=82.2
Q ss_pred ChHHHHHHHHHhhcCCCcEEEEeccHHHHHHHHHHHHhCCCeeEEecCCCCHHHHHHHHHHHhccCceEEEEEeecccHH
Q psy437 19 NVLKEVISLIKAKYSGQSGIVYCLTRKECDSVAAALAQERINAISYHAGLADKLRNEVQMKWISNKVHVGHWTVVSKECD 98 (184)
Q Consensus 19 ~k~~~L~~~l~~~~~~~~~IIf~~tr~~~e~la~~L~~~gi~~~~~hg~l~~~~R~~~~~~f~~g~~~vlVaT~tr~~~e 98 (184)
.+...+..++... ...++||||+++..++.++..|.+.++.+..+||++++.+|..+++.|.+|+.+|||+|+
T Consensus 343 ~k~~~l~~ll~~~-~~~~~LVF~~s~~~a~~l~~~L~~~~~~v~~~hg~~~~~~R~~il~~f~~g~~~VLVaT~------ 415 (508)
T 3fho_A 343 HKYNVLVELYGLL-TIGQSIIFCKKKDTAEEIARRMTADGHTVACLTGNLEGAQRDAIMDSFRVGTSKVLVTTN------ 415 (508)
T ss_dssp HHHHHHHHHHC----CCCEEEBCSSTTTTTHHHHHHTTTTCCCCEEC-----CTTGGGTHHHHSSSCCCCEECC------
T ss_pred HHHHHHHHHHHhc-CCCcEEEEECCHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHHCCCCeEEEeCC------
Confidence 4667777777543 678999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCcEEEeeCCCC------hHHHHHHHHHhhCCC
Q psy437 99 SVAAALAQERINAISYHAGLA------DKLRNEVQMKWISNK 134 (184)
Q Consensus 99 ~~a~gL~~~gi~~~vih~~~p------~~~r~~~~~~f~~~~ 134 (184)
.++.|+|.++++ +|+|+++| .+...|+|+.+|.|.
T Consensus 416 ~l~~GiDip~v~-~VI~~~~p~~~~~~~s~~~~~Qr~GRagR 456 (508)
T 3fho_A 416 VIARGIDVSQVN-LVVNYDMPLDQAGRPDPQTYLHRIGRTGR 456 (508)
T ss_dssp -----CCCTTCC-EEEC----CC-----CTHHHHHTTSCCC-
T ss_pred hhhcCCCccCCC-EEEEECCCCcccCCCCHHHHHHHhhhcCC
Confidence 889999999999 99999999 889999999977654
No 54
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=99.50 E-value=1.1e-14 Score=127.96 Aligned_cols=97 Identities=21% Similarity=0.203 Sum_probs=79.7
Q ss_pred CCCcEEEEeccHHHHHHHHHHHHhCCCeeEEecCCCCHHHHHHHHHHHhccCceEEEEEeecccHHHHHHHHHhcCCcEE
Q psy437 33 SGQSGIVYCLTRKECDSVAAALAQERINAISYHAGLADKLRNEVQMKWISNKVHVGHWTVVSKECDSVAAALAQERINAI 112 (184)
Q Consensus 33 ~~~~~IIf~~tr~~~e~la~~L~~~gi~~~~~hg~l~~~~R~~~~~~f~~g~~~vlVaT~tr~~~e~~a~gL~~~gi~~~ 112 (184)
...++||||+|++.++.+++.|.+.|+++..+||+|++++ |.+++.+|||||+ .+++|||.+ ++ .
T Consensus 395 ~~~~vLVFv~Tr~~ae~la~~L~~~g~~v~~lHG~l~q~e-------r~~~~~~VLVATd------VaerGIDId-V~-~ 459 (666)
T 3o8b_A 395 RGGRHLIFCHSKKKCDELAAKLSGLGINAVAYYRGLDVSV-------IPTIGDVVVVATD------ALMTGYTGD-FD-S 459 (666)
T ss_dssp SSSEEEEECSCHHHHHHHHHHHHTTTCCEEEECTTSCGGG-------SCSSSCEEEEECT------THHHHCCCC-BS-E
T ss_pred cCCcEEEEeCCHHHHHHHHHHHHhCCCcEEEecCCCCHHH-------HHhCCCcEEEECC------hHHccCCCC-Cc-E
Confidence 5678999999999999999999999999999999999876 4567779999999 889999986 98 8
Q ss_pred EeeCCCChHHHHHHHHHhhCCCceEEEEEecCCccEEEecC-----------CCCCccccccccccccCCc
Q psy437 113 SYHAGLADKLRNEVQMKWISNKVHLYNVWKIQWKRIIWIHS-----------LVLIKPDYLPPILDLRLGR 172 (184)
Q Consensus 113 vih~~~p~~~r~~~~~~f~~~~~~v~va~D~~~vr~v~~~~-----------~p~~~e~y~~~i~~~~~~r 172 (184)
|||.|+ .+++|+||| +|.+.++|+||++ |+||
T Consensus 460 VI~~Gl--------------------------~~~~ViNyDydP~~gl~~~~~P~s~~syiQRiG--RtGR 502 (666)
T 3o8b_A 460 VIDCNT--------------------------CVTQTVDFSLDPTFTIETTTVPQDAVSRSQRRG--RTGR 502 (666)
T ss_dssp EEECCE--------------------------EEEEEEECCCSSSCEEEEEEEECBHHHHHHHHT--TBCS
T ss_pred EEecCc--------------------------ccccccccccccccccccccCcCCHHHHHHHhc--cCCC
Confidence 887662 235666666 7777777777774 5555
No 55
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=99.49 E-value=5.7e-14 Score=130.01 Aligned_cols=100 Identities=9% Similarity=0.073 Sum_probs=86.5
Q ss_pred CCCCCeEEEEEEccChHHHHHHHHHhhcCCCcEEEEeccHHHHHHHHHHHHhCCCeeE-EecCCCCHHHHHHHHHHHhcc
Q psy437 5 FNRANLKYEILPKKNVLKEVISLIKAKYSGQSGIVYCLTRKECDSVAAALAQERINAI-SYHAGLADKLRNEVQMKWISN 83 (184)
Q Consensus 5 ~~R~Nl~y~v~~~~~k~~~L~~~l~~~~~~~~~IIf~~tr~~~e~la~~L~~~gi~~~-~~hg~l~~~~R~~~~~~f~~g 83 (184)
...+|+...+... ++...|.+++.. .+.++||||+|+..++.++..|...|+++. .+||. |.+ +++|++|
T Consensus 283 ~~~~~i~~~~~~~-~k~~~L~~ll~~--~~~~~LVF~~s~~~a~~l~~~L~~~g~~~~~~lhg~-----rr~-l~~F~~G 353 (1104)
T 4ddu_A 283 SVARNITHVRISS-RSKEKLVELLEI--FRDGILIFAQTEEEGKELYEYLKRFKFNVGETWSEF-----EKN-FEDFKVG 353 (1104)
T ss_dssp CCCCCEEEEEESC-CCHHHHHHHHHH--HCSSEEEEESSSHHHHHHHHHHHHTTCCEEESSSSH-----HHH-HHHHHHT
T ss_pred CCcCCceeEEEec-CHHHHHHHHHHh--cCCCEEEEECcHHHHHHHHHHHHhCCCCeeeEecCc-----HHH-HHHHHCC
Confidence 4456776555544 567888888876 358999999999999999999999999998 99992 555 9999999
Q ss_pred CceEEEE----EeecccHHHHHHHHHhcC-CcEEEeeCCCCh
Q psy437 84 KVHVGHW----TVVSKECDSVAAALAQER-INAISYHAGLAD 120 (184)
Q Consensus 84 ~~~vlVa----T~tr~~~e~~a~gL~~~g-i~~~vih~~~p~ 120 (184)
+.+|||| |+ .+++|||.++ |+ +|||+|+|.
T Consensus 354 ~~~VLVatas~Td------vlarGIDip~~V~-~VI~~d~P~ 388 (1104)
T 4ddu_A 354 KINILIGVQAYYG------KLTRGVDLPERIK-YVIFWGTPS 388 (1104)
T ss_dssp SCSEEEEETTTHH------HHCCSCCCTTTCC-EEEEESCCE
T ss_pred CCCEEEEecCCCC------eeEecCcCCCCCC-EEEEECCCC
Confidence 9999999 88 8899999999 99 999999998
No 56
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=99.21 E-value=3.6e-15 Score=110.33 Aligned_cols=87 Identities=16% Similarity=0.129 Sum_probs=81.5
Q ss_pred ceEEEEEeecccHHHHHHHHHhcCCcEEEeeCCCChHHHHHHHHHhhCCCceEEEE-------EecCCccEEEecCCCCC
Q psy437 85 VHVGHWTVVSKECDSVAAALAQERINAISYHAGLADKLRNEVQMKWISNKVHLYNV-------WKIQWKRIIWIHSLVLI 157 (184)
Q Consensus 85 ~~vlVaT~tr~~~e~~a~gL~~~gi~~~vih~~~p~~~r~~~~~~f~~~~~~v~va-------~D~~~vr~v~~~~~p~~ 157 (184)
.++||+|+++..++.++..|...|+.+..+|+++++..|..+.+.|++|++.|+++ +|+|++++|+++++|.+
T Consensus 31 ~~~iVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gid~~~~~~Vi~~~~p~~ 110 (170)
T 2yjt_D 31 TRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNVLVATDVAARGIDIPDVSHVFNFDMPRS 110 (170)
Confidence 47999999999999999999999999999999999999999999999999999998 59999999999999999
Q ss_pred ccccccccccccCCcc
Q psy437 158 KPDYLPPILDLRLGRE 173 (184)
Q Consensus 158 ~e~y~~~i~~~~~~r~ 173 (184)
...|+|+++ |+||.
T Consensus 111 ~~~~~qr~G--R~~R~ 124 (170)
T 2yjt_D 111 GDTYLHRIG--RTARA 124 (170)
Confidence 999999995 55553
No 57
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=99.47 E-value=6.9e-14 Score=125.15 Aligned_cols=98 Identities=9% Similarity=0.001 Sum_probs=79.0
Q ss_pred CCCCCCeEE-----EEEEccChHHHHHHHHHhh-cCCCcEEEEeccHHHHHHHHHHHHhCCCeeEEecCCCCHHHHHHHH
Q psy437 4 SFNRANLKY-----EILPKKNVLKEVISLIKAK-YSGQSGIVYCLTRKECDSVAAALAQERINAISYHAGLADKLRNEVQ 77 (184)
Q Consensus 4 s~~R~Nl~y-----~v~~~~~k~~~L~~~l~~~-~~~~~~IIf~~tr~~~e~la~~L~~~gi~~~~~hg~l~~~~R~~~~ 77 (184)
+.+||.+.- .......|...|.+.+.+. ..+.|+||||+|++.++.++..|.+.|+++.++||++.+.++..+.
T Consensus 424 Ptn~p~~R~d~~d~v~~t~~~K~~al~~~i~~~~~~gqpvLVft~Sie~sE~Ls~~L~~~Gi~~~vLnak~~~rEa~iia 503 (922)
T 1nkt_A 424 PTNMPMIREDQSDLIYKTEEAKYIAVVDDVAERYAKGQPVLIGTTSVERSEYLSRQFTKRRIPHNVLNAKYHEQEATIIA 503 (922)
T ss_dssp CCSSCCCCEECCCEEESCHHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHTTCCCEEECSSCHHHHHHHHH
T ss_pred CCCCCcccccCCcEEEeCHHHHHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHCCCCEEEecCChhHHHHHHHH
Confidence 456676542 2223345888888888653 2567899999999999999999999999999999999888888888
Q ss_pred HHHhccCceEEEEEeecccHHHHHHHHHhcCC
Q psy437 78 MKWISNKVHVGHWTVVSKECDSVAAALAQERI 109 (184)
Q Consensus 78 ~~f~~g~~~vlVaT~tr~~~e~~a~gL~~~gi 109 (184)
+.|+.| .|+|||+ .++||+|++..
T Consensus 504 ~agr~G--~VtIATn------mAgRGtDI~l~ 527 (922)
T 1nkt_A 504 VAGRRG--GVTVATN------MAGRGTDIVLG 527 (922)
T ss_dssp TTTSTT--CEEEEET------TCSTTCCCCTT
T ss_pred hcCCCC--eEEEecc------hhhcCccccCC
Confidence 888877 6899999 77889888865
No 58
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=99.46 E-value=1.6e-13 Score=125.92 Aligned_cols=110 Identities=15% Similarity=0.230 Sum_probs=95.7
Q ss_pred EccChHHHHHHHHHhhcCCCcEEEEeccHHHHHHHHHHHHhCCC------------------------------------
Q psy437 16 PKKNVLKEVISLIKAKYSGQSGIVYCLTRKECDSVAAALAQERI------------------------------------ 59 (184)
Q Consensus 16 ~~~~k~~~L~~~l~~~~~~~~~IIf~~tr~~~e~la~~L~~~gi------------------------------------ 59 (184)
+...+...|.+.+.+. ...++||||+|++.|+.++..|...++
T Consensus 319 ~~~~~~~~li~~l~~~-~~~~~IVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~ 397 (997)
T 4a4z_A 319 PSKKTWPEIVNYLRKR-ELLPMVVFVFSKKRCEEYADWLEGINFCNNKEKSQIHMFIEKSITRLKKEDRDLPQILKTRSL 397 (997)
T ss_dssp CCTTHHHHHHHHHHHT-TCCSEEEECSCHHHHHHHHHTTTTCCCCCHHHHHHHHHHHHHHHTTSCHHHHTCHHHHHHHHH
T ss_pred cchhHHHHHHHHHHhC-CCCCEEEEECCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhcchhhhcchhHHHHHHH
Confidence 4445788888888764 667999999999999999999987665
Q ss_pred ---eeEEecCCCCHHHHHHHHHHHhccCceEEEEEeecccHHHHHHHHHhcCCcEEEeeCCCCh---------HHHHHHH
Q psy437 60 ---NAISYHAGLADKLRNEVQMKWISNKVHVGHWTVVSKECDSVAAALAQERINAISYHAGLAD---------KLRNEVQ 127 (184)
Q Consensus 60 ---~~~~~hg~l~~~~R~~~~~~f~~g~~~vlVaT~tr~~~e~~a~gL~~~gi~~~vih~~~p~---------~~r~~~~ 127 (184)
.+.++||+|++.+|..+++.|.+|..+|||||+ .++.|+|.++ . .|++.++|+ +..+|+|
T Consensus 398 l~~gi~~~H~gl~~~~R~~v~~~F~~G~~kVLvAT~------~~a~GIDiP~-~-~VVi~~~~k~dg~~~~~~s~~~y~Q 469 (997)
T 4a4z_A 398 LERGIAVHHGGLLPIVKELIEILFSKGFIKVLFATE------TFAMGLNLPT-R-TVIFSSIRKHDGNGLRELTPGEFTQ 469 (997)
T ss_dssp HTTTEEEECTTSCHHHHHHHHHHHHTTCCSEEEECT------HHHHSCCCCC-S-EEEESCSEEEETTEEEECCHHHHHH
T ss_pred hhcCeeeecCCCCHHHHHHHHHHHHCCCCcEEEEch------HhhCCCCCCC-c-eEEEeccccccCccCCCCCHHHHhH
Confidence 468999999999999999999999999999999 8899999999 4 677777777 9999999
Q ss_pred HHhhCCC
Q psy437 128 MKWISNK 134 (184)
Q Consensus 128 ~~f~~~~ 134 (184)
+.++.|.
T Consensus 470 r~GRAGR 476 (997)
T 4a4z_A 470 MAGRAGR 476 (997)
T ss_dssp HHGGGCC
T ss_pred Hhccccc
Confidence 9987664
No 59
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=99.45 E-value=2.4e-13 Score=117.33 Aligned_cols=89 Identities=10% Similarity=0.132 Sum_probs=82.6
Q ss_pred cCceEEEEEeecccHHHHHHHHHhc---CCcEEEeeCCCChHHHHHHHHHhhCCCceEEEE-------EecCCccEEEec
Q psy437 83 NKVHVGHWTVVSKECDSVAAALAQE---RINAISYHAGLADKLRNEVQMKWISNKVHLYNV-------WKIQWKRIIWIH 152 (184)
Q Consensus 83 g~~~vlVaT~tr~~~e~~a~gL~~~---gi~~~vih~~~p~~~r~~~~~~f~~~~~~v~va-------~D~~~vr~v~~~ 152 (184)
...++||++++++.|+.++..|... ++.+..+|+++++..|..+.+.|++|+..|+|| +|+|++++||++
T Consensus 338 ~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vLvaT~~~~~GiDip~v~~VI~~ 417 (563)
T 3i5x_A 338 SNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRFKKDESGILVCTDVGARGMDFPNVHEVLQI 417 (563)
T ss_dssp TCCEEEEECSCHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEECGGGTSSCCCTTCCEEEEE
T ss_pred CCCcEEEEcCcHHHHHHHHHHHHHhccCCceEEEecCCCCHHHHHHHHHHHhcCCCCEEEEcchhhcCCCcccCCEEEEE
Confidence 3558999999999999999999765 999999999999999999999999999999999 699999999999
Q ss_pred CCCCCccccccccccccCCcc
Q psy437 153 SLVLIKPDYLPPILDLRLGRE 173 (184)
Q Consensus 153 ~~p~~~e~y~~~i~~~~~~r~ 173 (184)
++|.+.++|+|+++ |+||.
T Consensus 418 ~~p~s~~~y~Qr~G--RagR~ 436 (563)
T 3i5x_A 418 GVPSELANYIHRIG--RTARS 436 (563)
T ss_dssp SCCSSTTHHHHHHT--TSSCT
T ss_pred CCCCchhhhhhhcC--ccccC
Confidence 99999999999995 66665
No 60
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=99.45 E-value=7e-14 Score=125.35 Aligned_cols=95 Identities=8% Similarity=0.012 Sum_probs=89.3
Q ss_pred CCCcEEEEeccHHHHHHHHHHHHh-----------CCCeeEEecCCCCHHHHHHHHHHHh-----ccCceEEEEEeeccc
Q psy437 33 SGQSGIVYCLTRKECDSVAAALAQ-----------ERINAISYHAGLADKLRNEVQMKWI-----SNKVHVGHWTVVSKE 96 (184)
Q Consensus 33 ~~~~~IIf~~tr~~~e~la~~L~~-----------~gi~~~~~hg~l~~~~R~~~~~~f~-----~g~~~vlVaT~tr~~ 96 (184)
.++++||||++++.++.+++.|.+ .++.+..+||+|++++|..+++.|. +|..+|||||+
T Consensus 302 ~~g~iLVF~~~~~~i~~l~~~L~~~~~~l~~~~~~~~~~v~~lhg~l~~~eR~~v~~~f~~~~~~~g~~kVlVAT~---- 377 (773)
T 2xau_A 302 EAGDILLFLTGEDEIEDAVRKISLEGDQLVREEGCGPLSVYPLYGSLPPHQQQRIFEPAPESHNGRPGRKVVISTN---- 377 (773)
T ss_dssp CSCEEEEECSCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECTTCCHHHHGGGGSCCCCCSSSSCCEEEEEECT----
T ss_pred CCCCEEEECCCHHHHHHHHHHHHHHHHhhcccccCCCeEEEEeCCCCCHHHHHHHHhhcccccCCCCceEEEEeCc----
Confidence 578999999999999999999985 5888999999999999999999999 99999999999
Q ss_pred HHHHHHHHHhcCCcEEEeeCCC------------------ChHHHHHHHHHhhCCC
Q psy437 97 CDSVAAALAQERINAISYHAGL------------------ADKLRNEVQMKWISNK 134 (184)
Q Consensus 97 ~e~~a~gL~~~gi~~~vih~~~------------------p~~~r~~~~~~f~~~~ 134 (184)
.+++|+|+++++ +||++|+ |.+..+|+||.++.|.
T Consensus 378 --iae~GidIp~v~-~VId~g~~k~~~yd~~~g~~~L~~~p~S~~s~~QR~GRaGR 430 (773)
T 2xau_A 378 --IAETSLTIDGIV-YVVDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGR 430 (773)
T ss_dssp --HHHHTCCCTTEE-EEEECSEEEEEEEETTTTEEEEEEEECCHHHHHHHHHGGGS
T ss_pred --HHHhCcCcCCeE-EEEeCCCccceeeccccCccccccccCCHHHHHhhccccCC
Confidence 889999999999 9999999 8899999999988775
No 61
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=99.45 E-value=2.6e-13 Score=117.88 Aligned_cols=89 Identities=10% Similarity=0.132 Sum_probs=82.5
Q ss_pred cCceEEEEEeecccHHHHHHHHHhc---CCcEEEeeCCCChHHHHHHHHHhhCCCceEEEE-------EecCCccEEEec
Q psy437 83 NKVHVGHWTVVSKECDSVAAALAQE---RINAISYHAGLADKLRNEVQMKWISNKVHLYNV-------WKIQWKRIIWIH 152 (184)
Q Consensus 83 g~~~vlVaT~tr~~~e~~a~gL~~~---gi~~~vih~~~p~~~r~~~~~~f~~~~~~v~va-------~D~~~vr~v~~~ 152 (184)
...++||+|+++..|+.++..|... ++.+..+|+++++..|..+++.|++|+..|+|| +|+|++++||++
T Consensus 287 ~~~~~iVF~~t~~~~~~l~~~L~~~~~~~~~v~~~hg~~~~~~R~~~~~~F~~g~~~vLVaT~~~~~GiDip~v~~VI~~ 366 (579)
T 3sqw_A 287 SNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRFKKDESGILVCTDVGARGMDFPNVHEVLQI 366 (579)
T ss_dssp TCCEEEEECSSHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEECGGGTSSCCCTTCCEEEEE
T ss_pred CCCcEEEECCcHHHHHHHHHHHHHhhcCCCcEEEecCCCCHHHHHHHHHHhhcCCCeEEEEcchhhcCCCcccCCEEEEc
Confidence 3568999999999999999999766 999999999999999999999999999999999 699999999999
Q ss_pred CCCCCccccccccccccCCcc
Q psy437 153 SLVLIKPDYLPPILDLRLGRE 173 (184)
Q Consensus 153 ~~p~~~e~y~~~i~~~~~~r~ 173 (184)
++|.+.+.|+|+++ |+||.
T Consensus 367 ~~p~s~~~y~Qr~G--RagR~ 385 (579)
T 3sqw_A 367 GVPSELANYIHRIG--RTARS 385 (579)
T ss_dssp SCCSSTTHHHHHHT--TSSCT
T ss_pred CCCCCHHHhhhhcc--ccccC
Confidence 99999999999995 66664
No 62
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=99.44 E-value=4.9e-13 Score=110.51 Aligned_cols=84 Identities=14% Similarity=0.170 Sum_probs=69.2
Q ss_pred EEEEeecccHHHHHHHHHhcCCcEEEeeCCCChHHHHHHHHHhhCCCceEEEE-------EecCCccEEEecCCCCCccc
Q psy437 88 GHWTVVSKECDSVAAALAQERINAISYHAGLADKLRNEVQMKWISNKVHLYNV-------WKIQWKRIIWIHSLVLIKPD 160 (184)
Q Consensus 88 lVaT~tr~~~e~~a~gL~~~gi~~~vih~~~p~~~r~~~~~~f~~~~~~v~va-------~D~~~vr~v~~~~~p~~~e~ 160 (184)
||+++++..++.++..|...++.+..+|+++++..|..+.+.|++|+..|+|+ +|+|++++||++++|.+..+
T Consensus 284 lvf~~~~~~~~~l~~~l~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~v~~Vi~~~~p~s~~~ 363 (414)
T 3eiq_A 284 VIFINTRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTNREN 363 (414)
T ss_dssp EEECSCHHHHHHHHHHHHTTTCCCEEC---CHHHHHHHHHHHHSCC---CEEECSSCC--CCGGGCSCEEESSCCSSTHH
T ss_pred EEEeCCHHHHHHHHHHHHhcCCeEEEecCCCCHHHHHHHHHHHHcCCCcEEEECCccccCCCccCCCEEEEeCCCCCHHH
Confidence 56666667899999999999999999999999999999999999999999999 69999999999999999999
Q ss_pred cccccccccCCcc
Q psy437 161 YLPPILDLRLGRE 173 (184)
Q Consensus 161 y~~~i~~~~~~r~ 173 (184)
|+|+++ |+||.
T Consensus 364 ~~Qr~G--R~gR~ 374 (414)
T 3eiq_A 364 YIHRIG--RGGRF 374 (414)
T ss_dssp HHHHSC--CC---
T ss_pred hhhhcC--cccCC
Confidence 999995 66664
No 63
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=99.44 E-value=1.2e-13 Score=126.53 Aligned_cols=107 Identities=12% Similarity=0.042 Sum_probs=98.2
Q ss_pred ChHHHHHHHHHhhcCCCcEEEEeccHHHHHHHHHHHHh-CCCeeEEecCCCCHHHHHHHHHHHhccC--ceEEEEEeecc
Q psy437 19 NVLKEVISLIKAKYSGQSGIVYCLTRKECDSVAAALAQ-ERINAISYHAGLADKLRNEVQMKWISNK--VHVGHWTVVSK 95 (184)
Q Consensus 19 ~k~~~L~~~l~~~~~~~~~IIf~~tr~~~e~la~~L~~-~gi~~~~~hg~l~~~~R~~~~~~f~~g~--~~vlVaT~tr~ 95 (184)
.|...|.+++... .+.++||||+++..++.++..|.+ .|+++..+||+|++.+|..++++|++|+ .+|||||+
T Consensus 489 ~K~~~L~~ll~~~-~~~k~iVF~~~~~~~~~l~~~L~~~~g~~~~~lhG~~~~~~R~~~l~~F~~g~~~~~vLvaT~--- 564 (968)
T 3dmq_A 489 PRVEWLMGYLTSH-RSQKVLVICAKAATALQLEQVLREREGIRAAVFHEGMSIIERDRAAAWFAEEDTGAQVLLCSE--- 564 (968)
T ss_dssp HHHHHHHHHHHHT-SSSCCCEECSSTHHHHHHHHHHHTTTCCCEEEECTTSCTTHHHHHHHHHHSTTSSCEEEECSC---
T ss_pred HHHHHHHHHHHhC-CCCCEEEEeCcHHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhCCCCcccEEEecc---
Confidence 3888899988763 778999999999999999999995 5999999999999999999999999998 99999999
Q ss_pred cHHHHHHHHHhcCCcEEEeeCCCChHHHHHHHHHhhCC
Q psy437 96 ECDSVAAALAQERINAISYHAGLADKLRNEVQMKWISN 133 (184)
Q Consensus 96 ~~e~~a~gL~~~gi~~~vih~~~p~~~r~~~~~~f~~~ 133 (184)
.+++|+|.++++ .||++++|.+...|+|+..|.+
T Consensus 565 ---v~~~GlDl~~~~-~VI~~d~p~~~~~~~Q~~GR~~ 598 (968)
T 3dmq_A 565 ---IGSEGRNFQFAS-HMVMFDLPFNPDLLEQRIGRLD 598 (968)
T ss_dssp ---CTTCSSCCTTCC-EEECSSCCSSHHHHHHHHHTTS
T ss_pred ---hhhcCCCcccCc-EEEEecCCCCHHHHHHHhhccc
Confidence 678899999999 9999999999999999996643
No 64
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19
Probab=99.43 E-value=9.8e-13 Score=104.42 Aligned_cols=106 Identities=12% Similarity=0.044 Sum_probs=80.2
Q ss_pred cChHHHHHHHHHhh-cCCCcEEEEeccHHHHHHHHHHHHhC-CCeeEEecCCCCHHHHHHHHHHHhcc-Cce-EEEEEee
Q psy437 18 KNVLKEVISLIKAK-YSGQSGIVYCLTRKECDSVAAALAQE-RINAISYHAGLADKLRNEVQMKWISN-KVH-VGHWTVV 93 (184)
Q Consensus 18 ~~k~~~L~~~l~~~-~~~~~~IIf~~tr~~~e~la~~L~~~-gi~~~~~hg~l~~~~R~~~~~~f~~g-~~~-vlVaT~t 93 (184)
..|+..|.++|.+. ..+.++||||+++..++.+...|... |+++..+||++++++|..++++|.++ ..+ +|++|.
T Consensus 95 s~K~~~L~~ll~~~~~~~~kvlIFs~~~~~~~~l~~~L~~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~v~L~st~- 173 (271)
T 1z5z_A 95 SGKMIRTMEIIEEALDEGDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLSVK- 173 (271)
T ss_dssp CHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHHHCSCCCEECTTSCHHHHHHHHHHHHHCTTCCEEEEECC-
T ss_pred CHHHHHHHHHHHHHHhCCCeEEEEeccHHHHHHHHHHHHHhcCCcEEEEECCCCHHHHHHHHHHhcCCCCCCEEEEehh-
Confidence 35888888888653 15679999999999999999999885 99999999999999999999999998 677 677888
Q ss_pred cccHHHHHHHHHhcCCcEEEeeCCCChHHHHHHHHHh
Q psy437 94 SKECDSVAAALAQERINAISYHAGLADKLRNEVQMKW 130 (184)
Q Consensus 94 r~~~e~~a~gL~~~gi~~~vih~~~p~~~r~~~~~~f 130 (184)
..+.||+..+.+ .|||+|+|-+...+.|+..
T Consensus 174 -----~~g~Glnl~~a~-~VI~~d~~wnp~~~~Q~~g 204 (271)
T 1z5z_A 174 -----AGGFGINLTSAN-RVIHFDRWWNPAVEDQATD 204 (271)
T ss_dssp -----TTCCCCCCTTCS-EEEECSCCSCTTTC-----
T ss_pred -----hhcCCcCcccCC-EEEEECCCCChhHHHHHHH
Confidence 334566666655 5666666655555555553
No 65
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=99.42 E-value=5.6e-13 Score=110.34 Aligned_cols=101 Identities=18% Similarity=0.154 Sum_probs=88.2
Q ss_pred HHHHHHHHHHhc---cCceEEEEEeecccHHHHHHHHHhcCCcEEEeeCCCChHHHHHHHHHhhCCCceEEEE-------
Q psy437 71 KLRNEVQMKWIS---NKVHVGHWTVVSKECDSVAAALAQERINAISYHAGLADKLRNEVQMKWISNKVHLYNV------- 140 (184)
Q Consensus 71 ~~R~~~~~~f~~---g~~~vlVaT~tr~~~e~~a~gL~~~gi~~~vih~~~p~~~r~~~~~~f~~~~~~v~va------- 140 (184)
..+...+..+.. ...++||+++++..++.++..|...|+.+..+|+++++..|..+.+.|++|+..|+|+
T Consensus 260 ~~~~~~l~~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~~~~~G 339 (417)
T 2i4i_A 260 SDKRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSPILVATAVAARG 339 (417)
T ss_dssp GGHHHHHHHHHHTCCTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHHTSSCEEEECHHHHTT
T ss_pred HhHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHHCCCCeeEecCCCCHHHHHHHHHHHHcCCCCEEEECChhhcC
Confidence 444444444443 2457999999999999999999999999999999999999999999999999999999
Q ss_pred EecCCccEEEecCCCCCccccccccccccCCcc
Q psy437 141 WKIQWKRIIWIHSLVLIKPDYLPPILDLRLGRE 173 (184)
Q Consensus 141 ~D~~~vr~v~~~~~p~~~e~y~~~i~~~~~~r~ 173 (184)
+|+|++++|+++++|.+...|+|+++ |+||.
T Consensus 340 idip~v~~Vi~~~~p~s~~~~~Qr~G--R~gR~ 370 (417)
T 2i4i_A 340 LDISNVKHVINFDLPSDIEEYVHRIG--RTGRV 370 (417)
T ss_dssp SCCCCEEEEEESSCCSSHHHHHHHHT--TBCC-
T ss_pred CCcccCCEEEEEcCCCCHHHHHHhcC--ccccC
Confidence 69999999999999999999999995 66664
No 66
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=99.41 E-value=1.7e-13 Score=126.51 Aligned_cols=98 Identities=14% Similarity=0.183 Sum_probs=79.4
Q ss_pred CCCCeEEEEEEccChHHHHHHHHHhhcCCCcEEEEeccHHHHHHHHHHHHhCCCeeEEecCCCCHHHHHHHHHHHhccCc
Q psy437 6 NRANLKYEILPKKNVLKEVISLIKAKYSGQSGIVYCLTRKECDSVAAALAQERINAISYHAGLADKLRNEVQMKWISNKV 85 (184)
Q Consensus 6 ~R~Nl~y~v~~~~~k~~~L~~~l~~~~~~~~~IIf~~tr~~~e~la~~L~~~gi~~~~~hg~l~~~~R~~~~~~f~~g~~ 85 (184)
..+|+...+. ...+...|.+++.. .+.++||||+|++.|+.+++.|... +++..+||+++ .++++|++|+.
T Consensus 250 ~~~~i~~~~~-~~~k~~~L~~ll~~--~~~~~LVF~~t~~~a~~l~~~L~~~-~~v~~lhg~~~-----~~l~~F~~G~~ 320 (1054)
T 1gku_B 250 TVRNVEDVAV-NDESISTLSSILEK--LGTGGIIYARTGEEAEEIYESLKNK-FRIGIVTATKK-----GDYEKFVEGEI 320 (1054)
T ss_dssp CCCCEEEEEE-SCCCTTTTHHHHTT--SCSCEEEEESSHHHHHHHHHTTTTS-SCEEECTTSSS-----HHHHHHHHTSC
T ss_pred CcCCceEEEe-chhHHHHHHHHHhh--cCCCEEEEEcCHHHHHHHHHHHhhc-cCeeEEeccHH-----HHHHHHHcCCC
Confidence 3566665555 34567777777755 3678999999999999999999988 99999999983 78899999999
Q ss_pred eEEEE----EeecccHHHHHHHHHhcC-CcEEEeeCCCC
Q psy437 86 HVGHW----TVVSKECDSVAAALAQER-INAISYHAGLA 119 (184)
Q Consensus 86 ~vlVa----T~tr~~~e~~a~gL~~~g-i~~~vih~~~p 119 (184)
+|||| |+ .+++|||.++ ++ +|||+|+|
T Consensus 321 ~VLVaTas~Td------v~~rGIDip~VI~-~VI~~~~P 352 (1054)
T 1gku_B 321 DHLIGTAHYYG------TLVRGLDLPERIR-FAVFVGCP 352 (1054)
T ss_dssp SEEEEECC------------CCSCCTTTCC-EEEEESCC
T ss_pred cEEEEecCCCC------eeEeccccCCccc-EEEEeCCC
Confidence 99999 78 8899999999 59 99999999
No 67
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=99.40 E-value=6.2e-13 Score=122.18 Aligned_cols=106 Identities=15% Similarity=0.206 Sum_probs=91.6
Q ss_pred HHHHHHHHHhhcCCCcEEEEeccHHHHHHHHHHHHhCCCe---------------------------------------e
Q psy437 21 LKEVISLIKAKYSGQSGIVYCLTRKECDSVAAALAQERIN---------------------------------------A 61 (184)
Q Consensus 21 ~~~L~~~l~~~~~~~~~IIf~~tr~~~e~la~~L~~~gi~---------------------------------------~ 61 (184)
+..|+..+... ...++||||+|+..|+.++..|...++. +
T Consensus 331 l~~l~~~l~~~-~~~~~IVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gI 409 (1010)
T 2xgj_A 331 IYKIVKMIWKK-KYNPVIVFSFSKRDCEELALKMSKLDFNSDDEKEALTKIFNNAIALLPETDRELPQIKHILPLLRRGI 409 (1010)
T ss_dssp HHHHHHHHHHH-TCCSEEEEESSHHHHHHHHHTTTTSCCCCHHHHHHHHHHHHHHHTTSCGGGTTCHHHHHHHHHHHHTE
T ss_pred HHHHHHHHHhc-CCCCEEEEECCHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHhcchhhhcchhHHHHHHHHhCCe
Confidence 44566666543 5568999999999999999999775543 6
Q ss_pred EEecCCCCHHHHHHHHHHHhccCceEEEEEeecccHHHHHHHHHhcCCcEEEee----CCC----ChHHHHHHHHHhhCC
Q psy437 62 ISYHAGLADKLRNEVQMKWISNKVHVGHWTVVSKECDSVAAALAQERINAISYH----AGL----ADKLRNEVQMKWISN 133 (184)
Q Consensus 62 ~~~hg~l~~~~R~~~~~~f~~g~~~vlVaT~tr~~~e~~a~gL~~~gi~~~vih----~~~----p~~~r~~~~~~f~~~ 133 (184)
.++||+|++.+|..+++.|++|.++|||||+ .++.|+|.++++ +||| +|. |.+..+|+|+.+|.|
T Consensus 410 ~~~Hggl~~~eR~~ve~~F~~G~ikVLVAT~------~la~GIDiP~~~-vVI~~~~kfd~~~~rp~s~~~y~Qr~GRAG 482 (1010)
T 2xgj_A 410 GIHHSGLLPILKEVIEILFQEGFLKVLFATE------TFSIGLNMPAKT-VVFTSVRKWDGQQFRWVSGGEYIQMSGRAG 482 (1010)
T ss_dssp EEESTTSCHHHHHHHHHHHHTTCCSEEEEEG------GGGGSTTCCBSE-EEESCSEEECSSCEEECCHHHHHHHHTTBC
T ss_pred eEECCCCCHHHHHHHHHHHhcCCCcEEEEeh------HhhccCCCCCce-EEEeCCcccCCcCCccCCHHHHhHhhhhcc
Confidence 7899999999999999999999999999999 678899999998 8999 898 889999999998766
Q ss_pred C
Q psy437 134 K 134 (184)
Q Consensus 134 ~ 134 (184)
.
T Consensus 483 R 483 (1010)
T 2xgj_A 483 R 483 (1010)
T ss_dssp C
T ss_pred c
Confidence 4
No 68
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=99.39 E-value=4.5e-13 Score=118.42 Aligned_cols=93 Identities=11% Similarity=0.110 Sum_probs=85.4
Q ss_pred CCcEEEEeccHHHHHHHHHHHHhCCCeeEEecCCCCHHHHHHHHHHHhc--cCceEEEEEeecccHHHHHHHHHhcCCcE
Q psy437 34 GQSGIVYCLTRKECDSVAAALAQERINAISYHAGLADKLRNEVQMKWIS--NKVHVGHWTVVSKECDSVAAALAQERINA 111 (184)
Q Consensus 34 ~~~~IIf~~tr~~~e~la~~L~~~gi~~~~~hg~l~~~~R~~~~~~f~~--g~~~vlVaT~tr~~~e~~a~gL~~~gi~~ 111 (184)
....||||+|++.++.+++.|.+.++.+..+||+|++++|..+++.|.+ |+.+|||||+ .+++|||. +++
T Consensus 320 ~~g~iIf~~s~~~ie~la~~L~~~g~~v~~lHG~L~~~~R~~~~~~F~~~~g~~~VLVATd------i~e~GlDi-~v~- 391 (677)
T 3rc3_A 320 RPGDCIVCFSKNDIYSVSRQIEIRGLESAVIYGSLPPGTKLAQAKKFNDPNDPCKILVATD------AIGMGLNL-SIR- 391 (677)
T ss_dssp CTTEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHCTTSSCCEEEECG------GGGSSCCC-CBS-
T ss_pred CCCCEEEEcCHHHHHHHHHHHHhcCCCeeeeeccCCHHHHHHHHHHHHccCCCeEEEEeCc------HHHCCcCc-Ccc-
Confidence 3456999999999999999999999999999999999999999999999 8899999999 77889999 999
Q ss_pred EEeeCCC--------------ChHHHHHHHHHhhCCC
Q psy437 112 ISYHAGL--------------ADKLRNEVQMKWISNK 134 (184)
Q Consensus 112 ~vih~~~--------------p~~~r~~~~~~f~~~~ 134 (184)
.||++|+ |.+..+|+|+.+|.|.
T Consensus 392 ~VI~~~~~k~~~~~~G~~~~~p~s~~~~~QR~GRAGR 428 (677)
T 3rc3_A 392 RIIFYSLIKPSINEKGERELEPITTSQALQIAGRAGR 428 (677)
T ss_dssp EEEESCSBC-----------CBCCHHHHHHHHTTBTC
T ss_pred EEEECCccccccccCCccccccCCHHHHHHHhcCCCC
Confidence 9999999 6678999999977664
No 69
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=99.39 E-value=5.2e-13 Score=110.53 Aligned_cols=87 Identities=15% Similarity=0.164 Sum_probs=82.4
Q ss_pred ceEEEEEeecccHHHHHHHHHhcCCcEEEeeCCCChHHHHHHHHHhhCCCceEEEE-------EecCCccEEEecCCCCC
Q psy437 85 VHVGHWTVVSKECDSVAAALAQERINAISYHAGLADKLRNEVQMKWISNKVHLYNV-------WKIQWKRIIWIHSLVLI 157 (184)
Q Consensus 85 ~~vlVaT~tr~~~e~~a~gL~~~gi~~~vih~~~p~~~r~~~~~~f~~~~~~v~va-------~D~~~vr~v~~~~~p~~ 157 (184)
.++||++++++.++.++..|...|+.+..+|+++++..|..+.+.|++|+..|+|+ +|+|++++|+++++|.+
T Consensus 277 ~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidi~~v~~Vi~~~~p~s 356 (410)
T 2j0s_A 277 TQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLIINYDLPNN 356 (410)
T ss_dssp SEEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHHTSSCEEEECGGGSSSCCCTTEEEEEESSCCSS
T ss_pred CcEEEEEcCHHHHHHHHHHHHhCCCceEEeeCCCCHHHHHHHHHHHHCCCCCEEEECChhhCcCCcccCCEEEEECCCCC
Confidence 48999999999999999999999999999999999999999999999999999999 69999999999999999
Q ss_pred ccccccccccccCCcc
Q psy437 158 KPDYLPPILDLRLGRE 173 (184)
Q Consensus 158 ~e~y~~~i~~~~~~r~ 173 (184)
.+.|+|+++ |+||.
T Consensus 357 ~~~~~Qr~G--R~gR~ 370 (410)
T 2j0s_A 357 RELYIHRIG--RSGRY 370 (410)
T ss_dssp HHHHHHHHT--TSSGG
T ss_pred HHHHHHhcc--cccCC
Confidence 999999995 66664
No 70
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=99.38 E-value=7.7e-13 Score=118.56 Aligned_cols=139 Identities=10% Similarity=0.046 Sum_probs=118.0
Q ss_pred CCCcEEEEeccHHHHHHHHHHHHhC----CCeeEEecCCCCHHHHHHHHHHHhccCceEEEEEeec--------------
Q psy437 33 SGQSGIVYCLTRKECDSVAAALAQE----RINAISYHAGLADKLRNEVQMKWISNKVHVGHWTVVS-------------- 94 (184)
Q Consensus 33 ~~~~~IIf~~tr~~~e~la~~L~~~----gi~~~~~hg~l~~~~R~~~~~~f~~g~~~vlVaT~tr-------------- 94 (184)
.+.++++.+||+..+.++++.+.+. |+++..+||+++..+|...++.+.+|+.+|+|+|+..
T Consensus 416 ~g~qvlvlaPtr~La~Q~~~~l~~~~~~~gi~v~~l~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~~~~~~~l~lVV 495 (780)
T 1gm5_A 416 AGFQTAFMVPTSILAIQHYRRTVESFSKFNIHVALLIGATTPSEKEKIKSGLRNGQIDVVIGTHALIQEDVHFKNLGLVI 495 (780)
T ss_dssp HTSCEEEECSCHHHHHHHHHHHHHHHTCSSCCEEECCSSSCHHHHHHHHHHHHSSCCCEEEECTTHHHHCCCCSCCCEEE
T ss_pred cCCeEEEEeCcHHHHHHHHHHHHHHhhhcCceEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhhhhhccCCceEE
Confidence 3578999999999999998887653 7899999999999999999999999999999999876
Q ss_pred --------------------------------------------------------------------------------
Q psy437 95 -------------------------------------------------------------------------------- 94 (184)
Q Consensus 95 -------------------------------------------------------------------------------- 94 (184)
T Consensus 496 IDEaHr~g~~qr~~l~~~~~~~~vL~mSATp~p~tl~~~~~g~~~~s~i~~~p~~r~~i~~~~~~~~~~~~l~~~i~~~l 575 (780)
T 1gm5_A 496 IDEQHRFGVKQREALMNKGKMVDTLVMSATPIPRSMALAFYGDLDVTVIDEMPPGRKEVQTMLVPMDRVNEVYEFVRQEV 575 (780)
T ss_dssp EESCCCC-----CCCCSSSSCCCEEEEESSCCCHHHHHHHTCCSSCEEECCCCSSCCCCEECCCCSSTHHHHHHHHHHHT
T ss_pred ecccchhhHHHHHHHHHhCCCCCEEEEeCCCCHHHHHHHHhCCcceeeeeccCCCCcceEEEEeccchHHHHHHHHHHHH
Confidence
Q ss_pred ---------------------ccHHHHHHHHHh---cCCcEEEeeCCCChHHHHHHHHHhhCCCceEEEE-------Eec
Q psy437 95 ---------------------KECDSVAAALAQ---ERINAISYHAGLADKLRNEVQMKWISNKVHLYNV-------WKI 143 (184)
Q Consensus 95 ---------------------~~~e~~a~gL~~---~gi~~~vih~~~p~~~r~~~~~~f~~~~~~v~va-------~D~ 143 (184)
..++.++..|.. +++++..+|+++++..|..+.+.|++|++.|+|| +|+
T Consensus 576 ~~g~qvlVf~~~ie~se~l~~~~a~~l~~~L~~~~~~~~~v~~lHG~m~~~eR~~v~~~F~~G~~~ILVaT~vie~GIDi 655 (780)
T 1gm5_A 576 MRGGQAFIVYPLIEESDKLNVKSAVEMYEYLSKEVFPEFKLGLMHGRLSQEEKDRVMLEFAEGRYDILVSTTVIEVGIDV 655 (780)
T ss_dssp TTSCCBCCBCCCC--------CHHHHHHHSGGGSCC---CBCCCCSSSCCSCSHHHHHHHTTTSSSBCCCSSCCCSCSCC
T ss_pred hcCCcEEEEecchhhhhhhhHHHHHHHHHHHHhhhcCCCcEEEEeCCCCHHHHHHHHHHHHCCCCeEEEECCCCCccccC
Confidence 024667777766 6888899999999999999999999999999999 599
Q ss_pred CCccEEEecCCCC-CccccccccccccCCcc
Q psy437 144 QWKRIIWIHSLVL-IKPDYLPPILDLRLGRE 173 (184)
Q Consensus 144 ~~vr~v~~~~~p~-~~e~y~~~i~~~~~~r~ 173 (184)
|++++|++++.|. +...|.|++ +|+||.
T Consensus 656 P~v~~VIi~d~~r~~l~~l~Qr~--GRaGR~ 684 (780)
T 1gm5_A 656 PRANVMVIENPERFGLAQLHQLR--GRVGRG 684 (780)
T ss_dssp TTCCEEEBCSCSSSCTTHHHHHH--HTSCCS
T ss_pred CCCCEEEEeCCCCCCHHHHHHHh--cccCcC
Confidence 9999999999997 566667888 477774
No 71
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=99.38 E-value=3.1e-13 Score=114.29 Aligned_cols=96 Identities=8% Similarity=-0.070 Sum_probs=84.9
Q ss_pred HHHHHhhcCCCcEEEEeccHHHHHHHHHHHHhCCCeeEEecCCCCHHHHHHHHHHHhccCceEEEEEeecccHHHHHHHH
Q psy437 25 ISLIKAKYSGQSGIVYCLTRKECDSVAAALAQERINAISYHAGLADKLRNEVQMKWISNKVHVGHWTVVSKECDSVAAAL 104 (184)
Q Consensus 25 ~~~l~~~~~~~~~IIf~~tr~~~e~la~~L~~~gi~~~~~hg~l~~~~R~~~~~~f~~g~~~vlVaT~tr~~~e~~a~gL 104 (184)
...+.+ ..+++||||+|++.++.+++.|.+.|+++..+||++ +.++++.|++|+.+|||||+ .+++|+
T Consensus 181 ~~~l~~--~~~~~lVF~~s~~~a~~l~~~L~~~g~~~~~lh~~~----~~~~~~~f~~g~~~vLVaT~------v~~~Gi 248 (451)
T 2jlq_A 181 FDWITD--YQGKTVWFVPSIKAGNDIANCLRKSGKRVIQLSRKT----FDTEYPKTKLTDWDFVVTTD------ISEMGA 248 (451)
T ss_dssp CHHHHH--CCSCEEEECSSHHHHHHHHHHHHTTTCCEEEECTTT----HHHHGGGGGSSCCSEEEECG------GGGSSC
T ss_pred HHHHHh--CCCCEEEEcCCHHHHHHHHHHHHHcCCeEEECCHHH----HHHHHHhhccCCceEEEECC------HHHhCc
Confidence 344544 456999999999999999999999999999999974 46799999999999999999 789999
Q ss_pred HhcCCcEEEeeCC--------------------CChHHHHHHHHHhhCCC
Q psy437 105 AQERINAISYHAG--------------------LADKLRNEVQMKWISNK 134 (184)
Q Consensus 105 ~~~gi~~~vih~~--------------------~p~~~r~~~~~~f~~~~ 134 (184)
|.++ + .|||+| +|.+..+|+|+.++.|.
T Consensus 249 Dip~-~-~VI~~~~~~~~~~d~~~~~~l~~~~~~p~s~~~y~Qr~GRaGR 296 (451)
T 2jlq_A 249 NFRA-G-RVIDPRRCLKPVILTDGPERVILAGPIPVTPASAAQRRGRIGR 296 (451)
T ss_dssp CCCC-S-EEEECCEEEEEEEECSSSCEEEEEEEEECCHHHHHHHHTTSSC
T ss_pred CCCC-C-EEEECCCcccccccccccceeeecccccCCHHHHHHhccccCC
Confidence 9999 7 999999 99999999999977553
No 72
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=99.37 E-value=2.1e-12 Score=105.75 Aligned_cols=102 Identities=14% Similarity=0.092 Sum_probs=89.8
Q ss_pred HHHHHHHHHHHhc--cCceEEEEEeecccHHHHHHHHHhcCCcEEEeeCCCChHHHHHHHHHhhCCCceEEEE-------
Q psy437 70 DKLRNEVQMKWIS--NKVHVGHWTVVSKECDSVAAALAQERINAISYHAGLADKLRNEVQMKWISNKVHLYNV------- 140 (184)
Q Consensus 70 ~~~R~~~~~~f~~--g~~~vlVaT~tr~~~e~~a~gL~~~gi~~~vih~~~p~~~r~~~~~~f~~~~~~v~va------- 140 (184)
...+...+..+.. ...++||+++++..++.++..|...|+++..+|+++|+..|..+.+.|++|+..|+|+
T Consensus 227 ~~~~~~~l~~~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~G 306 (395)
T 3pey_A 227 EADKFDVLTELYGLMTIGSSIIFVATKKTANVLYGKLKSEGHEVSILHGDLQTQERDRLIDDFREGRSKVLITTNVLARG 306 (395)
T ss_dssp HHHHHHHHHHHHTTTTSSEEEEECSCHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHTTSCCEEEECGGGSSS
T ss_pred hHHHHHHHHHHHHhccCCCEEEEeCCHHHHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHHHHCCCCCEEEECChhhcC
Confidence 3455555555543 2358999999999999999999999999999999999999999999999999999999
Q ss_pred EecCCccEEEecCCCC------CccccccccccccCCcc
Q psy437 141 WKIQWKRIIWIHSLVL------IKPDYLPPILDLRLGRE 173 (184)
Q Consensus 141 ~D~~~vr~v~~~~~p~------~~e~y~~~i~~~~~~r~ 173 (184)
+|+|++++|+++++|. +...|+|+++ |+||.
T Consensus 307 idip~~~~Vi~~~~p~~~~~~~s~~~~~Qr~G--R~gR~ 343 (395)
T 3pey_A 307 IDIPTVSMVVNYDLPTLANGQADPATYIHRIG--RTGRF 343 (395)
T ss_dssp CCCTTEEEEEESSCCBCTTSSBCHHHHHHHHT--TSSCT
T ss_pred CCcccCCEEEEcCCCCCCcCCCCHHHhhHhcc--ccccC
Confidence 6999999999999999 9999999995 66664
No 73
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=99.37 E-value=2e-12 Score=106.67 Aligned_cols=101 Identities=15% Similarity=0.113 Sum_probs=87.2
Q ss_pred HHHHHHHHHHhc--cCceEEEEEeecccHHHHHHHHHhcCCcEEEeeCCCChHHHHHHHHHhhCCCceEEEE-------E
Q psy437 71 KLRNEVQMKWIS--NKVHVGHWTVVSKECDSVAAALAQERINAISYHAGLADKLRNEVQMKWISNKVHLYNV-------W 141 (184)
Q Consensus 71 ~~R~~~~~~f~~--g~~~vlVaT~tr~~~e~~a~gL~~~gi~~~vih~~~p~~~r~~~~~~f~~~~~~v~va-------~ 141 (184)
..+...+..+.. ...++||+++++..++.++..|...|+.+..+|+++|+..|..+.+.|++|+..|+|+ +
T Consensus 251 ~~~~~~l~~~~~~~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gi 330 (412)
T 3fht_A 251 DEKFQALCNLYGAITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTNVCARGI 330 (412)
T ss_dssp HHHHHHHHHHHHHHSSSEEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHTTSCSEEEECGGGTSSC
T ss_pred HHHHHHHHHHHhhcCCCCEEEEeCCHHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHHHCCCCcEEEEcCccccCC
Confidence 344444444443 3458999999999999999999999999999999999999999999999999999999 6
Q ss_pred ecCCccEEEecCCCC------CccccccccccccCCcc
Q psy437 142 KIQWKRIIWIHSLVL------IKPDYLPPILDLRLGRE 173 (184)
Q Consensus 142 D~~~vr~v~~~~~p~------~~e~y~~~i~~~~~~r~ 173 (184)
|+|++++|+++++|. +..+|+|+++ |+||.
T Consensus 331 dip~~~~Vi~~~~p~~~~~~~s~~~~~Qr~G--R~gR~ 366 (412)
T 3fht_A 331 DVEQVSVVINFDLPVDKDGNPDNETYLHRIG--RTGRF 366 (412)
T ss_dssp CCTTEEEEEESSCCBCSSSSBCHHHHHHHHT--TSSCT
T ss_pred CccCCCEEEEECCCCCCCCCcchheeecccC--cccCC
Confidence 999999999999994 6689999995 66764
No 74
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=99.37 E-value=3.1e-13 Score=125.13 Aligned_cols=106 Identities=15% Similarity=0.227 Sum_probs=85.7
Q ss_pred HHHHHHHHHhhcCCCcEEEEeccHHHHHHHHHHHHhCCCe---------------------------------------e
Q psy437 21 LKEVISLIKAKYSGQSGIVYCLTRKECDSVAAALAQERIN---------------------------------------A 61 (184)
Q Consensus 21 ~~~L~~~l~~~~~~~~~IIf~~tr~~~e~la~~L~~~gi~---------------------------------------~ 61 (184)
+..++..+.+. ...++||||+|+..|+.++..|...++. +
T Consensus 429 l~~li~~l~~~-~~~~vIVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gV 507 (1108)
T 3l9o_A 429 IYKIVKMIWKK-KYNPVIVFSFSKRDCEELALKMSKLDFNSDDEKEALTKIFNNAIALLPETDRELPQIKHILPLLRRGI 507 (1108)
T ss_dssp HHHHHHHHHHT-TCCCEEEEESCHHHHHHHHHHTCSHHHHCC----CHHHHGGGSCTHHHHHTTCCHHHHHHTHHHHHTE
T ss_pred HHHHHHHHHhc-CCCCEEEEeCcHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHhhcchhhhhhhhHHHHHHhhhcCe
Confidence 34455555443 5679999999999999999998654332 6
Q ss_pred EEecCCCCHHHHHHHHHHHhccCceEEEEEeecccHHHHHHHHHhcCCcEEEeeCCCC--------hHHHHHHHHHhhCC
Q psy437 62 ISYHAGLADKLRNEVQMKWISNKVHVGHWTVVSKECDSVAAALAQERINAISYHAGLA--------DKLRNEVQMKWISN 133 (184)
Q Consensus 62 ~~~hg~l~~~~R~~~~~~f~~g~~~vlVaT~tr~~~e~~a~gL~~~gi~~~vih~~~p--------~~~r~~~~~~f~~~ 133 (184)
.++||+|++.+|..+++.|.+|.++|||||+ .+++|+|.++++ +|||++.| -+..+|+|+.+|.|
T Consensus 508 ~~~Hg~l~~~~R~~v~~~F~~G~ikVLVAT~------vla~GIDiP~v~-~VI~~~~~~d~~~~r~iS~~eyiQr~GRAG 580 (1108)
T 3l9o_A 508 GIHHSGLLPILKEVIEILFQEGFLKVLFATE------TFSIGLNMPAKT-VVFTSVRKWDGQQFRWVSGGEYIQMSGRAG 580 (1108)
T ss_dssp EEECSCSCHHHHHHHHHHHHHTCCCEEEEES------CCCSCCCC--CE-EEESCSEEESSSCEEECCHHHHHHHHHHSC
T ss_pred eeecCCCCHHHHHHHHHHHhCCCCeEEEECc------HHhcCCCCCCce-EEEecCcccCccccccCCHHHHHHhhcccC
Confidence 8899999999999999999999999999999 568899999999 89988774 36778999998765
Q ss_pred C
Q psy437 134 K 134 (184)
Q Consensus 134 ~ 134 (184)
.
T Consensus 581 R 581 (1108)
T 3l9o_A 581 R 581 (1108)
T ss_dssp C
T ss_pred C
Confidence 4
No 75
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=99.36 E-value=2.4e-12 Score=104.34 Aligned_cols=102 Identities=16% Similarity=0.157 Sum_probs=89.9
Q ss_pred HHHHHHHHHHHh-ccCceEEEEEeecccHHHHHHHHHhcCCcEEEeeCCCChHHHHHHHHHhhCCCceEEEE-------E
Q psy437 70 DKLRNEVQMKWI-SNKVHVGHWTVVSKECDSVAAALAQERINAISYHAGLADKLRNEVQMKWISNKVHLYNV-------W 141 (184)
Q Consensus 70 ~~~R~~~~~~f~-~g~~~vlVaT~tr~~~e~~a~gL~~~gi~~~vih~~~p~~~r~~~~~~f~~~~~~v~va-------~ 141 (184)
..++...+..+. ....++||+++++..++.++..|...|+.+..+|+++|+..|..+.+.|++|+..|+++ +
T Consensus 223 ~~~~~~~l~~~l~~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gi 302 (367)
T 1hv8_A 223 ENERFEALCRLLKNKEFYGLVFCKTKRDTKELASMLRDIGFKAGAIHGDLSQSQREKVIRLFKQKKIRILIATDVMSRGI 302 (367)
T ss_dssp GGGHHHHHHHHHCSTTCCEEEECSSHHHHHHHHHHHHHTTCCEEEECSSSCHHHHHHHHHHHHTTSSSEEEECTTHHHHC
T ss_pred hHHHHHHHHHHHhcCCCcEEEEECCHHHHHHHHHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHcCCCeEEEECChhhcCC
Confidence 344555544444 45668999999999999999999999999999999999999999999999999999999 6
Q ss_pred ecCCccEEEecCCCCCccccccccccccCCcc
Q psy437 142 KIQWKRIIWIHSLVLIKPDYLPPILDLRLGRE 173 (184)
Q Consensus 142 D~~~vr~v~~~~~p~~~e~y~~~i~~~~~~r~ 173 (184)
|+|++++|+++++|.+..+|+|+++ |+||.
T Consensus 303 d~~~~~~Vi~~~~~~s~~~~~Q~~G--R~~R~ 332 (367)
T 1hv8_A 303 DVNDLNCVINYHLPQNPESYMHRIG--RTGRA 332 (367)
T ss_dssp CCSCCSEEEESSCCSCHHHHHHHST--TTCCS
T ss_pred CcccCCEEEEecCCCCHHHhhhccc--ccccC
Confidence 9999999999999999999999995 66665
No 76
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=99.36 E-value=3.9e-12 Score=112.92 Aligned_cols=105 Identities=18% Similarity=0.153 Sum_probs=86.3
Q ss_pred hHHHHHHHHHhhcCCCcEEEEeccHHHHHHHHHHHHhCC------------------------------------CeeEE
Q psy437 20 VLKEVISLIKAKYSGQSGIVYCLTRKECDSVAAALAQER------------------------------------INAIS 63 (184)
Q Consensus 20 k~~~L~~~l~~~~~~~~~IIf~~tr~~~e~la~~L~~~g------------------------------------i~~~~ 63 (184)
+...+.+.+. .+.++||||+|++.++.++..|.+.. ..+.+
T Consensus 241 ~~~~~~~~~~---~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~v~~ 317 (715)
T 2va8_A 241 IIAYTLDSLS---KNGQVLVFRNSRKMAESTALKIANYMNFVSLDENALSEILKQLDDIEEGGSDEKELLKSLISKGVAY 317 (715)
T ss_dssp HHHHHHHHHT---TTCCEEEECSSHHHHHHHHHHHHHTTTSSCCCHHHHHHHHHHHHTCCSSCHHHHHHHHHHHTTTEEE
T ss_pred HHHHHHHHHh---cCCCEEEEECCHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHhhhccccccHHHHHHHhcCEEE
Confidence 4444444442 56899999999999999999998642 24888
Q ss_pred ecCCCCHHHHHHHHHHHhccCceEEEEEeecccHHHHHHHHHhcCCcEEEee----CC-------CChHHHHHHHHHhhC
Q psy437 64 YHAGLADKLRNEVQMKWISNKVHVGHWTVVSKECDSVAAALAQERINAISYH----AG-------LADKLRNEVQMKWIS 132 (184)
Q Consensus 64 ~hg~l~~~~R~~~~~~f~~g~~~vlVaT~tr~~~e~~a~gL~~~gi~~~vih----~~-------~p~~~r~~~~~~f~~ 132 (184)
+||+|++++|..+++.|.+|..+|||||+ .++.|+|.++++ +||+ ++ .|.+..+|.|+.+|.
T Consensus 318 ~h~~l~~~~r~~v~~~f~~g~~~vlvaT~------~l~~Gidip~~~-~VI~~~~~~d~~~~~~~~~~s~~~~~Qr~GRa 390 (715)
T 2va8_A 318 HHAGLSKALRDLIEEGFRQRKIKVIVATP------TLAAGVNLPART-VIIGDIYRFNKKIAGYYDEIPIMEYKQMSGRA 390 (715)
T ss_dssp ECTTSCHHHHHHHHHHHHTTCSCEEEECG------GGGGSSCCCBSE-EEECCC--------------CHHHHHHHHTTB
T ss_pred ECCCCCHHHHHHHHHHHHcCCCeEEEECh------HHhcccCCCceE-EEEeCCeeccccCCCCCCcCCHHHHHHHhhhc
Confidence 99999999999999999999999999999 778899999998 8999 77 899999999999887
Q ss_pred CC
Q psy437 133 NK 134 (184)
Q Consensus 133 ~~ 134 (184)
|.
T Consensus 391 GR 392 (715)
T 2va8_A 391 GR 392 (715)
T ss_dssp CC
T ss_pred CC
Confidence 75
No 77
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=99.35 E-value=7.4e-13 Score=108.62 Aligned_cols=85 Identities=14% Similarity=0.186 Sum_probs=0.0
Q ss_pred EEEEEeecccHHHHHHHHHhcCCcEEEeeCCCChHHHHHHHHHhhCCCceEEEE-------EecCCccEEEecCCCCCcc
Q psy437 87 VGHWTVVSKECDSVAAALAQERINAISYHAGLADKLRNEVQMKWISNKVHLYNV-------WKIQWKRIIWIHSLVLIKP 159 (184)
Q Consensus 87 vlVaT~tr~~~e~~a~gL~~~gi~~~vih~~~p~~~r~~~~~~f~~~~~~v~va-------~D~~~vr~v~~~~~p~~~e 159 (184)
+||+++++.+++.++..|...|+.+..+|+++|+..|..+.+.|++|+..|+|+ +|+|++++|+++++|.+..
T Consensus 262 ~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gldi~~~~~Vi~~~~p~s~~ 341 (394)
T 1fuu_A 262 AVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTDLLARGIDVQQVSLVINYDLPANKE 341 (394)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred EEEEECCHHHHHHHHHHHHHcCCeEEEeeCCCCHHHHHHHHHHHHCCCCcEEEECChhhcCCCcccCCEEEEeCCCCCHH
Confidence 477777778899999999999999999999999999999999999999999998 6999999999999999999
Q ss_pred ccccccccccCCcc
Q psy437 160 DYLPPILDLRLGRE 173 (184)
Q Consensus 160 ~y~~~i~~~~~~r~ 173 (184)
.|+|+++ |+||.
T Consensus 342 ~~~Qr~G--R~~R~ 353 (394)
T 1fuu_A 342 NYIHRIG--RGGRF 353 (394)
T ss_dssp --------------
T ss_pred HHHHHcC--cccCC
Confidence 9999995 66664
No 78
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=99.35 E-value=3.1e-12 Score=105.45 Aligned_cols=102 Identities=17% Similarity=0.135 Sum_probs=88.8
Q ss_pred HHHHHHHHHHHhc--cCceEEEEEeecccHHHHHHHHHhcCCcEEEeeCCCChHHHHHHHHHhhCCCceEEEE-------
Q psy437 70 DKLRNEVQMKWIS--NKVHVGHWTVVSKECDSVAAALAQERINAISYHAGLADKLRNEVQMKWISNKVHLYNV------- 140 (184)
Q Consensus 70 ~~~R~~~~~~f~~--g~~~vlVaT~tr~~~e~~a~gL~~~gi~~~vih~~~p~~~r~~~~~~f~~~~~~v~va------- 140 (184)
...+...+..+.. ...++||+++++..++.++..|...|+.+..+|+++++..|..+.+.|++|+..|+|+
T Consensus 242 ~~~k~~~l~~~~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~G 321 (400)
T 1s2m_A 242 ERQKLHCLNTLFSKLQINQAIIFCNSTNRVELLAKKITDLGYSCYYSHARMKQQERNKVFHEFRQGKVRTLVCSDLLTRG 321 (400)
T ss_dssp GGGHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHHTCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEESSCSSSS
T ss_pred hhhHHHHHHHHHhhcCCCcEEEEEecHHHHHHHHHHHHhcCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCccccC
Confidence 3444444444443 2348999999999999999999999999999999999999999999999999999999
Q ss_pred EecCCccEEEecCCCCCccccccccccccCCcc
Q psy437 141 WKIQWKRIIWIHSLVLIKPDYLPPILDLRLGRE 173 (184)
Q Consensus 141 ~D~~~vr~v~~~~~p~~~e~y~~~i~~~~~~r~ 173 (184)
+|+|++++|+++++|.+...|+|+++ |+||.
T Consensus 322 idip~~~~Vi~~~~p~s~~~~~Qr~G--R~gR~ 352 (400)
T 1s2m_A 322 IDIQAVNVVINFDFPKTAETYLHRIG--RSGRF 352 (400)
T ss_dssp CCCTTEEEEEESSCCSSHHHHHHHHC--BSSCT
T ss_pred CCccCCCEEEEeCCCCCHHHHHHhcc--hhcCC
Confidence 69999999999999999999999995 66665
No 79
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=99.34 E-value=3.8e-13 Score=118.92 Aligned_cols=97 Identities=9% Similarity=-0.062 Sum_probs=83.0
Q ss_pred HHHHHHhhcCCCcEEEEeccHHHHHHHHHHHHhCCCeeEEecCCCCHHHHHHHHHHHhccCceEEEEEeecccHHHHHHH
Q psy437 24 VISLIKAKYSGQSGIVYCLTRKECDSVAAALAQERINAISYHAGLADKLRNEVQMKWISNKVHVGHWTVVSKECDSVAAA 103 (184)
Q Consensus 24 L~~~l~~~~~~~~~IIf~~tr~~~e~la~~L~~~gi~~~~~hg~l~~~~R~~~~~~f~~g~~~vlVaT~tr~~~e~~a~g 103 (184)
+...+.+ ...++||||+|++.++.+++.|.+.++++..+||+ +|.++++.|++|+.+|||||+ .+++|
T Consensus 402 ~l~~l~~--~~~~~lVF~~s~~~~e~la~~L~~~g~~v~~lHg~----eR~~v~~~F~~g~~~VLVaTd------v~e~G 469 (673)
T 2wv9_A 402 GFEWITD--YAGKTVWFVASVKMSNEIAQCLQRAGKRVIQLNRK----SYDTEYPKCKNGDWDFVITTD------ISEMG 469 (673)
T ss_dssp CCHHHHS--CCSCEEEECSSHHHHHHHHHHHHTTTCCEEEECSS----SHHHHGGGGGTCCCSEEEECG------GGGTT
T ss_pred HHHHHHh--CCCCEEEEECCHHHHHHHHHHHHhCCCeEEEeChH----HHHHHHHHHHCCCceEEEECc------hhhcc
Confidence 3445544 56799999999999999999999999999999994 799999999999999999999 78999
Q ss_pred HHhcCCcEEEee--------------------CCCChHHHHHHHHHhhCCC
Q psy437 104 LAQERINAISYH--------------------AGLADKLRNEVQMKWISNK 134 (184)
Q Consensus 104 L~~~gi~~~vih--------------------~~~p~~~r~~~~~~f~~~~ 134 (184)
+|.+ ++ .||| +++|.+..+|+|+..|.|.
T Consensus 470 IDip-v~-~VI~~g~~~~p~vi~da~~r~~ll~d~P~s~~~y~Qr~GRaGR 518 (673)
T 2wv9_A 470 ANFG-AS-RVIDCRKSVKPTILDEGEGRVILSVPSAITSASAAQRRGRVGR 518 (673)
T ss_dssp CCCC-CS-EEEECCEECCEEEECSTTCEEEECCSEECCHHHHHHHHTTSSC
T ss_pred eeeC-Cc-EEEECCCcccceeeecccccceecccCCCCHHHHHHHhhccCC
Confidence 9999 98 8888 4577777777777765544
No 80
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=99.33 E-value=2.8e-12 Score=113.28 Aligned_cols=95 Identities=16% Similarity=0.066 Sum_probs=86.8
Q ss_pred HHHHhccCceEEEEEeecccHHHHHHHHHhcCCcEEEeeCCCChHHHHHHHHHhhCCCceEEEE-------EecCCccEE
Q psy437 77 QMKWISNKVHVGHWTVVSKECDSVAAALAQERINAISYHAGLADKLRNEVQMKWISNKVHLYNV-------WKIQWKRII 149 (184)
Q Consensus 77 ~~~f~~g~~~vlVaT~tr~~~e~~a~gL~~~gi~~~vih~~~p~~~r~~~~~~f~~~~~~v~va-------~D~~~vr~v 149 (184)
+..+.....++||+|++++.++.++..|...|+++..+|+++++..|..+.+.|+.|++.|+|+ +|+|++++|
T Consensus 438 l~~~~~~~~~vlVf~~t~~~ae~L~~~L~~~gi~~~~lh~~~~~~~R~~~l~~f~~g~~~VLVaT~~l~~GlDip~v~lV 517 (661)
T 2d7d_A 438 IQARIERNERVLVTTLTKKMSEDLTDYLKEIGIKVNYLHSEIKTLERIEIIRDLRLGKYDVLVGINLLREGLDIPEVSLV 517 (661)
T ss_dssp HHHHHTTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHHHHTSCSEEEESCCCSTTCCCTTEEEE
T ss_pred HHHHHhcCCeEEEEECCHHHHHHHHHHHHhcCCCeEEEeCCCCHHHHHHHHHHHhcCCeEEEEecchhhCCcccCCCCEE
Confidence 3444444568999999999999999999999999999999999999999999999999999998 699999999
Q ss_pred EecCC-----CCCccccccccccccCCcc
Q psy437 150 WIHSL-----VLIKPDYLPPILDLRLGRE 173 (184)
Q Consensus 150 ~~~~~-----p~~~e~y~~~i~~~~~~r~ 173 (184)
++++. |.+.++|+|++ +|+||.
T Consensus 518 i~~d~d~~G~p~s~~~~iQr~--GRagR~ 544 (661)
T 2d7d_A 518 AILDADKEGFLRSERSLIQTI--GRAARN 544 (661)
T ss_dssp EETTTTCCTTTTSHHHHHHHH--HTTTTS
T ss_pred EEeCcccccCCCCHHHHHHHh--CcccCC
Confidence 99998 99999999999 588886
No 81
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=99.33 E-value=1e-12 Score=116.00 Aligned_cols=88 Identities=14% Similarity=0.102 Sum_probs=77.0
Q ss_pred CceEEEEEeecccHHHHHHHHHhc------CCcEEEeeCC--------CChHHHHHHHHHhhCCCceEEEE-------Ee
Q psy437 84 KVHVGHWTVVSKECDSVAAALAQE------RINAISYHAG--------LADKLRNEVQMKWISNKVHLYNV-------WK 142 (184)
Q Consensus 84 ~~~vlVaT~tr~~~e~~a~gL~~~------gi~~~vih~~--------~p~~~r~~~~~~f~~~~~~v~va-------~D 142 (184)
..++||+|.++..++.++..|... |+++..+|++ |++..|..+++.|++|++.|+|| +|
T Consensus 400 ~~~~IVF~~s~~~~~~l~~~L~~~~~l~~~g~~~~~lhg~~~~~~~~~~~~~eR~~~~~~F~~g~~~VLVaT~~~~~GID 479 (699)
T 4gl2_A 400 SARGIIFTKTRQSAYALSQWITENEKFAEVGVKAHHLIGAGHSSEFKPMTQNEQKEVISKFRTGKINLLIATTVAEEGLD 479 (699)
T ss_dssp CCCEEEECSCHHHHHHHHHHHHSSCSCC-----CEECCCSCCCTTCCCCCHHHHHHHHHHHCC---CCSEEECSCCTTSC
T ss_pred CCcEEEEECcHHHHHHHHHHHHhCccccccCcceEEEECCCCccCCCCCCHHHHHHHHHHHhcCCCcEEEEccccccCCc
Confidence 578999999999999999999877 8999999999 99999999999999999999999 59
Q ss_pred cCCccEEEecCCCCCccccccccccccCCcc
Q psy437 143 IQWKRIIWIHSLVLIKPDYLPPILDLRLGRE 173 (184)
Q Consensus 143 ~~~vr~v~~~~~p~~~e~y~~~i~~~~~~r~ 173 (184)
+|++++|||||+|.++++|+|+++ |+||.
T Consensus 480 ip~v~~VI~~d~p~s~~~~~Qr~G--RArr~ 508 (699)
T 4gl2_A 480 IKECNIVIRYGLVTNEIAMVQARG--RARAD 508 (699)
T ss_dssp CCSCCCCEEESCCCCHHHHHHHHT--TSCSS
T ss_pred cccCCEEEEeCCCCCHHHHHHHcC--CCCCC
Confidence 999999999999999999999995 56665
No 82
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=99.32 E-value=1.7e-12 Score=115.34 Aligned_cols=106 Identities=15% Similarity=0.137 Sum_probs=90.7
Q ss_pred ChHHHHHHHHHhhcCCCcEEEEeccHHHHHHHHHHHHhC------------------C---------------CeeEEec
Q psy437 19 NVLKEVISLIKAKYSGQSGIVYCLTRKECDSVAAALAQE------------------R---------------INAISYH 65 (184)
Q Consensus 19 ~k~~~L~~~l~~~~~~~~~IIf~~tr~~~e~la~~L~~~------------------g---------------i~~~~~h 65 (184)
.+...+.+.+. .+.++||||+|++.++.++..|.+. + ..+.++|
T Consensus 225 ~~~~~~~~~~~---~~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~~~~~v~~~h 301 (720)
T 2zj8_A 225 SWEELVYDAIR---KKKGALIFVNMRRKAERVALELSKKVKSLLTKPEIRALNELADSLEENPTNEKLAKAIRGGVAFHH 301 (720)
T ss_dssp STTHHHHHHHH---TTCCEEEECSCHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHTSCSCHHHHHHHHHHTTTEEEEC
T ss_pred HHHHHHHHHHh---CCCCEEEEecCHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHhcccchHHHHHHHhcCeeeec
Confidence 35566666553 4589999999999999999999753 1 2388999
Q ss_pred CCCCHHHHHHHHHHHhccCceEEEEEeecccHHHHHHHHHhcCCcEEEee----CC----CChHHHHHHHHHhhCCC
Q psy437 66 AGLADKLRNEVQMKWISNKVHVGHWTVVSKECDSVAAALAQERINAISYH----AG----LADKLRNEVQMKWISNK 134 (184)
Q Consensus 66 g~l~~~~R~~~~~~f~~g~~~vlVaT~tr~~~e~~a~gL~~~gi~~~vih----~~----~p~~~r~~~~~~f~~~~ 134 (184)
|+|++++|..+++.|.+|..+|||||+ .++.|+|.++++ +||+ ++ .|.+..+|+|+.+|.|.
T Consensus 302 ~~l~~~~R~~v~~~f~~g~~~vlvaT~------~l~~Gvdip~~~-~VI~~~~~yd~~g~~~~s~~~~~Qr~GRaGR 371 (720)
T 2zj8_A 302 AGLGRDERVLVEENFRKGIIKAVVATP------TLSAGINTPAFR-VIIRDIWRYSDFGMERIPIIEVHQMLGRAGR 371 (720)
T ss_dssp TTSCHHHHHHHHHHHHTTSSCEEEECS------TTGGGCCCCBSE-EEECCSEECCSSSCEECCHHHHHHHHTTBCC
T ss_pred CCCCHHHHHHHHHHHHCCCCeEEEECc------HhhccCCCCceE-EEEcCCeeecCCCCccCCHHHHHHHHhhcCC
Confidence 999999999999999999999999999 778899999998 8998 54 58999999999988776
No 83
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=99.32 E-value=3.1e-12 Score=112.98 Aligned_cols=95 Identities=12% Similarity=0.017 Sum_probs=86.7
Q ss_pred HHHHhccCceEEEEEeecccHHHHHHHHHhcCCcEEEeeCCCChHHHHHHHHHhhCCCceEEEE-------EecCCccEE
Q psy437 77 QMKWISNKVHVGHWTVVSKECDSVAAALAQERINAISYHAGLADKLRNEVQMKWISNKVHLYNV-------WKIQWKRII 149 (184)
Q Consensus 77 ~~~f~~g~~~vlVaT~tr~~~e~~a~gL~~~gi~~~vih~~~p~~~r~~~~~~f~~~~~~v~va-------~D~~~vr~v 149 (184)
+..+.....++||+|++++.++.++..|...|+++..+|+++++..|..+.+.|+.|++.|+|+ +|+|++++|
T Consensus 432 l~~~~~~~~~vlVf~~t~~~ae~L~~~L~~~gi~~~~lh~~~~~~~R~~~~~~f~~g~~~VLvaT~~l~~GlDip~v~lV 511 (664)
T 1c4o_A 432 IRERAARGERTLVTVLTVRMAEELTSFLVEHGIRARYLHHELDAFKRQALIRDLRLGHYDCLVGINLLREGLDIPEVSLV 511 (664)
T ss_dssp HHHHHHTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHHHTTSCSEEEESCCCCTTCCCTTEEEE
T ss_pred HHHHHhcCCEEEEEECCHHHHHHHHHHHHhcCCCceeecCCCCHHHHHHHHHHhhcCCceEEEccChhhcCccCCCCCEE
Confidence 3444445568999999999999999999999999999999999999999999999999999998 699999999
Q ss_pred EecCC-----CCCccccccccccccCCcc
Q psy437 150 WIHSL-----VLIKPDYLPPILDLRLGRE 173 (184)
Q Consensus 150 ~~~~~-----p~~~e~y~~~i~~~~~~r~ 173 (184)
++++. |.+.++|+|++ +|+||.
T Consensus 512 I~~d~d~~G~p~s~~~~iQr~--GRagR~ 538 (664)
T 1c4o_A 512 AILDADKEGFLRSERSLIQTI--GRAARN 538 (664)
T ss_dssp EETTTTSCSGGGSHHHHHHHH--GGGTTS
T ss_pred EEeCCcccCCCCCHHHHHHHH--CccCcC
Confidence 99998 99999999999 588886
No 84
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=99.32 E-value=3.7e-13 Score=114.07 Aligned_cols=96 Identities=8% Similarity=-0.071 Sum_probs=81.7
Q ss_pred HHHHHhhcCCCcEEEEeccHHHHHHHHHHHHhCCCeeEEecCCCCHHHHHHHHHHHhccCceEEEEEeecccHHHHHHHH
Q psy437 25 ISLIKAKYSGQSGIVYCLTRKECDSVAAALAQERINAISYHAGLADKLRNEVQMKWISNKVHVGHWTVVSKECDSVAAAL 104 (184)
Q Consensus 25 ~~~l~~~~~~~~~IIf~~tr~~~e~la~~L~~~gi~~~~~hg~l~~~~R~~~~~~f~~g~~~vlVaT~tr~~~e~~a~gL 104 (184)
...+.+ ..+++||||+|++.++.+++.|...|+++..+||. +|..+++.|++|+.+|||||+ .+++|+
T Consensus 183 ~~~l~~--~~~~~LVF~~s~~~~~~l~~~L~~~g~~v~~lh~~----~R~~~~~~f~~g~~~iLVaT~------v~~~Gi 250 (459)
T 2z83_A 183 YEWITE--YAGKTVWFVASVKMGNEIAMCLQRAGKKVIQLNRK----SYDTEYPKCKNGDWDFVITTD------ISEMGA 250 (459)
T ss_dssp CHHHHH--CCSCEEEECSCHHHHHHHHHHHHHTTCCEEEESTT----CCCCCGGGSSSCCCSEEEESS------CC---C
T ss_pred HHHHHh--cCCCEEEEeCChHHHHHHHHHHHhcCCcEEecCHH----HHHHHHhhccCCCceEEEECC------hHHhCe
Confidence 345544 46799999999999999999999999999999995 688899999999999999999 779999
Q ss_pred HhcCCcEEEee--------------------CCCChHHHHHHHHHhhCCC
Q psy437 105 AQERINAISYH--------------------AGLADKLRNEVQMKWISNK 134 (184)
Q Consensus 105 ~~~gi~~~vih--------------------~~~p~~~r~~~~~~f~~~~ 134 (184)
|.++ + .||| +++|.+..+|+||.++.|.
T Consensus 251 Dip~-~-~VI~~G~~~~~~~~~~~~~~~~~~~d~p~s~~~~~QR~GRaGR 298 (459)
T 2z83_A 251 NFGA-S-RVIDCRKSVKPTILEEGEGRVILGNPSPITSASAAQRRGRVGR 298 (459)
T ss_dssp CCSC-S-EEEECCEECCEEEECSSSCEEEECSCEECCHHHHHHHHTTSSC
T ss_pred ecCC-C-EEEECCcccccccccccccccccccCCCCCHHHHHHhccccCC
Confidence 9999 7 9999 5699999999999876654
No 85
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=99.32 E-value=3.3e-11 Score=100.09 Aligned_cols=80 Identities=10% Similarity=-0.002 Sum_probs=69.0
Q ss_pred EEEEEeecccHHHHHHHHHhcCCcEE-EeeCCCChHHHHHHHHHhhCCCceEEEE-----------EecCC-ccEEEecC
Q psy437 87 VGHWTVVSKECDSVAAALAQERINAI-SYHAGLADKLRNEVQMKWISNKVHLYNV-----------WKIQW-KRIIWIHS 153 (184)
Q Consensus 87 vlVaT~tr~~~e~~a~gL~~~gi~~~-vih~~~p~~~r~~~~~~f~~~~~~v~va-----------~D~~~-vr~v~~~~ 153 (184)
+||+|+++..|+.++..|...|+++. .+|++ .|. .+.|++|++.|+|| +|+|+ +++||+++
T Consensus 255 ~lVF~~~~~~~~~l~~~L~~~~~~~~~~~h~~----~r~--~~~f~~g~~~vLvat~s~T~~~~~GiDip~~v~~VI~~~ 328 (414)
T 3oiy_A 255 ILIFAQTEEEGKELYEYLKRFKFNVGETWSEF----EKN--FEDFKVGKINILIGVQAYYGKLTRGVDLPERIKYVIFWG 328 (414)
T ss_dssp EEEEESSHHHHHHHHHHHHHTTCCEEESSSCH----HHH--HHHHHTTSCSEEEEECCTTCCCCCCCCCTTTCCEEEEES
T ss_pred EEEEECCHHHHHHHHHHHHHcCCceehhhcCc----chH--HHHHhCCCCeEEEEecCcCchhhccCccccccCEEEEEC
Confidence 37777777899999999999999977 78885 444 89999999999998 39999 99999999
Q ss_pred CC--CCccccccccccccCCccc
Q psy437 154 LV--LIKPDYLPPILDLRLGRED 174 (184)
Q Consensus 154 ~p--~~~e~y~~~i~~~~~~r~~ 174 (184)
+| .+.+.|+|+++ |+||.+
T Consensus 329 ~p~~~~~~~y~qr~G--R~gR~g 349 (414)
T 3oiy_A 329 TPSGPDVYTYIQASG--RSSRIL 349 (414)
T ss_dssp CCTTTCHHHHHHHHG--GGCCEE
T ss_pred CCCCCCHHHHHHHhC--ccccCC
Confidence 99 99999999995 777754
No 86
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=99.30 E-value=4.8e-12 Score=107.94 Aligned_cols=103 Identities=8% Similarity=-0.096 Sum_probs=87.0
Q ss_pred HHHHHHHHHhhc--CCCcEEEEeccHHHHHHHHHHHHhCCCeeEEecCCCCHHHHHHHHHHHhccCceEEEEE-eecccH
Q psy437 21 LKEVISLIKAKY--SGQSGIVYCLTRKECDSVAAALAQERINAISYHAGLADKLRNEVQMKWISNKVHVGHWT-VVSKEC 97 (184)
Q Consensus 21 ~~~L~~~l~~~~--~~~~~IIf~~tr~~~e~la~~L~~~gi~~~~~hg~l~~~~R~~~~~~f~~g~~~vlVaT-~tr~~~ 97 (184)
...+.+.+.+.. .+.+.||||+ .+.++.+++.|.+.+.++..+||++++.+|.++++.|.+|+.+||||| +
T Consensus 333 ~~~l~~~l~~~~~~~~~~~ivf~~-~~~~~~l~~~L~~~~~~v~~~~g~~~~~~r~~i~~~f~~g~~~vLv~T~~----- 406 (510)
T 2oca_A 333 NKWIAKLAIKLAQKDENAFVMFKH-VSHGKAIFDLIKNEYDKVYYVSGEVDTETRNIMKTLAENGKGIIIVASYG----- 406 (510)
T ss_dssp HHHHHHHHHHHHTTTCEEEEEESS-HHHHHHHHHHHHTTCSSEEEESSSTTHHHHHHHHHHHHHCCSCEEEEEHH-----
T ss_pred HHHHHHHHHHHHhcCCCeEEEEec-HHHHHHHHHHHHHcCCCeEEEECCCCHHHHHHHHHHHhCCCCCEEEEEcC-----
Confidence 334555554321 2334556666 888899999999988899999999999999999999999999999999 8
Q ss_pred HHHHHHHHhcCCcEEEeeCCCChHHHHHHHHHhh
Q psy437 98 DSVAAALAQERINAISYHAGLADKLRNEVQMKWI 131 (184)
Q Consensus 98 e~~a~gL~~~gi~~~vih~~~p~~~r~~~~~~f~ 131 (184)
.++.|+|.++++ .|++++.|.+...++|+..|
T Consensus 407 -~~~~GiDip~v~-~vi~~~~~~s~~~~~Q~~GR 438 (510)
T 2oca_A 407 -VFSTGISVKNLH-HVVLAHGVKSKIIVLQTIGR 438 (510)
T ss_dssp -HHHHSCCCCSEE-EEEESSCCCSCCHHHHHHHH
T ss_pred -hhhcccccccCc-EEEEeCCCCCHHHHHHHHhc
Confidence 889999999999 99999999999999999854
No 87
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=99.29 E-value=2e-12 Score=114.66 Aligned_cols=105 Identities=20% Similarity=0.140 Sum_probs=89.9
Q ss_pred hHHHHHHHHHhhcCCCcEEEEeccHHHHHHHHHHHHhC------------------------------CCeeEEecCCCC
Q psy437 20 VLKEVISLIKAKYSGQSGIVYCLTRKECDSVAAALAQE------------------------------RINAISYHAGLA 69 (184)
Q Consensus 20 k~~~L~~~l~~~~~~~~~IIf~~tr~~~e~la~~L~~~------------------------------gi~~~~~hg~l~ 69 (184)
+...+.+.+. .+.++||||+|++.++.++..|.+. +..+.++||+|+
T Consensus 231 ~~~~~~~~~~---~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~v~~~h~~l~ 307 (702)
T 2p6r_A 231 FEELVEECVA---ENGGVLVFESTRRGAEKTAVKLSAITAKYVENEGLEKAILEENEGEMSRKLAECVRKGAAFHHAGLL 307 (702)
T ss_dssp HHHHHHHHHH---TTCCEEEECSSHHHHHHHHHHHHHHHHTTCCCSSHHHHHHTTCCSHHHHHHHHHHHTTCCEECTTSC
T ss_pred HHHHHHHHHh---cCCCEEEEcCCHHHHHHHHHHHHHHHHhhcChHHHHHHHHhhccccccHHHHHHHhcCeEEecCCCC
Confidence 4556666553 5689999999999999999998753 135788999999
Q ss_pred HHHHHHHHHHHhccCceEEEEEeecccHHHHHHHHHhcCCcEEEee----CC---CChHHHHHHHHHhhCCC
Q psy437 70 DKLRNEVQMKWISNKVHVGHWTVVSKECDSVAAALAQERINAISYH----AG---LADKLRNEVQMKWISNK 134 (184)
Q Consensus 70 ~~~R~~~~~~f~~g~~~vlVaT~tr~~~e~~a~gL~~~gi~~~vih----~~---~p~~~r~~~~~~f~~~~ 134 (184)
+++|..+++.|.+|..+|||||+ .++.|+|.++++ +||+ |+ .|.+..+|.|+.+|.|.
T Consensus 308 ~~~R~~v~~~f~~g~~~vlvaT~------~l~~Gidip~~~-~VI~~~~~yd~~~~~~s~~~~~Qr~GRaGR 372 (702)
T 2p6r_A 308 NGQRRVVEDAFRRGNIKVVVATP------TLAAGVNLPARR-VIVRSLYRFDGYSKRIKVSEYKQMAGRAGR 372 (702)
T ss_dssp HHHHHHHHHHHHTTSCCEEEECS------TTTSSSCCCBSE-EEECCSEEESSSEEECCHHHHHHHHTTBSC
T ss_pred HHHHHHHHHHHHCCCCeEEEECc------HHhccCCCCceE-EEEcCceeeCCCCCcCCHHHHHHHhhhcCC
Confidence 99999999999999999999999 678899999998 8988 44 78899999999988765
No 88
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=99.28 E-value=2.5e-12 Score=113.51 Aligned_cols=87 Identities=8% Similarity=0.027 Sum_probs=49.9
Q ss_pred CceEEEEEeecccHHHHHHHHHhcC----CcEEEe--------eCCCChHHHHHHHHHhhC-CCceEEEE-------Eec
Q psy437 84 KVHVGHWTVVSKECDSVAAALAQER----INAISY--------HAGLADKLRNEVQMKWIS-NKVHLYNV-------WKI 143 (184)
Q Consensus 84 ~~~vlVaT~tr~~~e~~a~gL~~~g----i~~~vi--------h~~~p~~~r~~~~~~f~~-~~~~v~va-------~D~ 143 (184)
..++||+|+++..++.++..|...| +++..+ |+++|+..|..+.+.|++ |+..|+|| +|+
T Consensus 398 ~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~~~~l~G~~~~~~h~~~~~~eR~~v~~~F~~~g~~~vLVaT~v~~~GiDi 477 (696)
T 2ykg_A 398 ETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDI 477 (696)
T ss_dssp TCCEEEECSCHHHHHHHHHHHHHCTTCCSCCEEC-----------------------------CCSCSEEEESSCCC---
T ss_pred CCcEEEEeCcHHHHHHHHHHHHhCCCccccceeEEEccCCCccccCCCHHHHHHHHHHHHhcCCccEEEEechhhcCCcC
Confidence 4589999999999999999999887 888888 569999999999999998 99999999 699
Q ss_pred CCccEEEecCCCCCccccccccccccCCcc
Q psy437 144 QWKRIIWIHSLVLIKPDYLPPILDLRLGRE 173 (184)
Q Consensus 144 ~~vr~v~~~~~p~~~e~y~~~i~~~~~~r~ 173 (184)
|++++|||||+|.+.++|+|+++ | ||.
T Consensus 478 p~v~~VI~~d~p~s~~~~~Qr~G--R-GR~ 504 (696)
T 2ykg_A 478 AQCNLVILYEYVGNVIKMIQTRG--R-GRA 504 (696)
T ss_dssp CCCSEEEEESCC--CCCC------------
T ss_pred ccCCEEEEeCCCCCHHHHHHhhc--c-CcC
Confidence 99999999999999999999995 6 885
No 89
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=99.27 E-value=1.5e-11 Score=114.39 Aligned_cols=123 Identities=11% Similarity=0.024 Sum_probs=95.0
Q ss_pred CCCCCCeEEEEEEccChHHHHHHHHHhhcCCCcEEEEeccHHHHHHHHHHHHhC--CCeeEEecCCCCHHHHHHHHHHHh
Q psy437 4 SFNRANLKYEILPKKNVLKEVISLIKAKYSGQSGIVYCLTRKECDSVAAALAQE--RINAISYHAGLADKLRNEVQMKWI 81 (184)
Q Consensus 4 s~~R~Nl~y~v~~~~~k~~~L~~~l~~~~~~~~~IIf~~tr~~~e~la~~L~~~--gi~~~~~hg~l~~~~R~~~~~~f~ 81 (184)
+..|.++...+..... ......++.....+.+++|||++++.++.+++.|.+. ++++..+||+|++.+|.+++++|.
T Consensus 783 ~~~r~~i~~~~~~~~~-~~i~~~il~~l~~g~qvlvf~~~v~~~~~l~~~L~~~~p~~~v~~lhg~~~~~eR~~il~~F~ 861 (1151)
T 2eyq_A 783 PARRLAVKTFVREYDS-MVVREAILREILRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFH 861 (1151)
T ss_dssp CCBCBCEEEEEEECCH-HHHHHHHHHHHTTTCEEEEECCCSSCHHHHHHHHHHHCTTSCEEECCSSCCHHHHHHHHHHHH
T ss_pred CCCccccEEEEecCCH-HHHHHHHHHHHhcCCeEEEEECCHHHHHHHHHHHHHhCCCCeEEEEeCCCCHHHHHHHHHHHH
Confidence 3445566555554432 2222222333335688999999999999999999987 889999999999999999999999
Q ss_pred ccCceEEEEEeecccHHHHHHHHHhcCCcEEEeeCCC-ChHHHHHHHHHhhCCC
Q psy437 82 SNKVHVGHWTVVSKECDSVAAALAQERINAISYHAGL-ADKLRNEVQMKWISNK 134 (184)
Q Consensus 82 ~g~~~vlVaT~tr~~~e~~a~gL~~~gi~~~vih~~~-p~~~r~~~~~~f~~~~ 134 (184)
+|+.+|||||+ .+++|+|.++++ .||..+. +-+...++|+.+|.|.
T Consensus 862 ~g~~~VLVaT~------v~e~GiDip~v~-~VIi~~~~~~~l~~l~Qr~GRvgR 908 (1151)
T 2eyq_A 862 HQRFNVLVCTT------IIETGIDIPTAN-TIIIERADHFGLAQLHQLRGRVGR 908 (1151)
T ss_dssp TTSCCEEEESS------TTGGGSCCTTEE-EEEETTTTSSCHHHHHHHHTTCCB
T ss_pred cCCCcEEEECC------cceeeecccCCc-EEEEeCCCCCCHHHHHHHHhccCc
Confidence 99999999999 778999999999 5554444 4567789999876554
No 90
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=99.27 E-value=5.4e-13 Score=112.81 Aligned_cols=103 Identities=7% Similarity=0.037 Sum_probs=91.4
Q ss_pred ChHHHHHHHHHhhcCCCcEEEEeccHHHHHHHHHHHHhCCCeeEEecCCCCHHHHHHHHHHHhccCceEEEEEeecccHH
Q psy437 19 NVLKEVISLIKAKYSGQSGIVYCLTRKECDSVAAALAQERINAISYHAGLADKLRNEVQMKWISNKVHVGHWTVVSKECD 98 (184)
Q Consensus 19 ~k~~~L~~~l~~~~~~~~~IIf~~tr~~~e~la~~L~~~gi~~~~~hg~l~~~~R~~~~~~f~~g~~~vlVaT~tr~~~e 98 (184)
.|...|.+++.+ ..+.++||||++++.++.+++.|. +..+||++++.+|.+++++|.+|+.+|||+|+
T Consensus 335 ~k~~~l~~~l~~-~~~~k~lvF~~~~~~~~~l~~~l~-----~~~~~g~~~~~~R~~~~~~F~~g~~~vLv~T~------ 402 (472)
T 2fwr_A 335 NKIRKLREILER-HRKDKIIIFTRHNELVYRISKVFL-----IPAITHRTSREEREEILEGFRTGRFRAIVSSQ------ 402 (472)
T ss_dssp HHHHHHHHHHHH-TSSSCBCCBCSCHHHHHHHHHHTT-----CCBCCSSSCSHHHHTHHHHHHHSSCSBCBCSS------
T ss_pred HHHHHHHHHHHh-CCCCcEEEEECCHHHHHHHHHHhC-----cceeeCCCCHHHHHHHHHHHhCCCCCEEEEcC------
Confidence 367788888876 377899999999999999999884 56799999999999999999999999999999
Q ss_pred HHHHHHHhcCCcEEEeeCCCChHHHHHHHHHhhCCC
Q psy437 99 SVAAALAQERINAISYHAGLADKLRNEVQMKWISNK 134 (184)
Q Consensus 99 ~~a~gL~~~gi~~~vih~~~p~~~r~~~~~~f~~~~ 134 (184)
.++.|+|.++++ .|++++.|.+...|+|+..|.+.
T Consensus 403 ~~~~Gldlp~~~-~Vi~~~~~~s~~~~~Q~~GR~~R 437 (472)
T 2fwr_A 403 VLDEGIDVPDAN-VGVIMSGSGSAREYIQRLGRILR 437 (472)
T ss_dssp CCCSSSCSCCBS-EEEEECCSSCCHHHHHHHHHSBC
T ss_pred chhcCcccccCc-EEEEECCCCCHHHHHHHHhhccC
Confidence 667899999999 99999999999999999976543
No 91
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=99.26 E-value=1.1e-10 Score=108.55 Aligned_cols=139 Identities=12% Similarity=0.017 Sum_probs=120.2
Q ss_pred CCCcEEEEeccHHHHHHHHHHHHhC----CCeeEEecCCCCHHHHHHHHHHHhccCceEEEEEeec--------------
Q psy437 33 SGQSGIVYCLTRKECDSVAAALAQE----RINAISYHAGLADKLRNEVQMKWISNKVHVGHWTVVS-------------- 94 (184)
Q Consensus 33 ~~~~~IIf~~tr~~~e~la~~L~~~----gi~~~~~hg~l~~~~R~~~~~~f~~g~~~vlVaT~tr-------------- 94 (184)
.+.+++|.|||+..+.++++.+.+. ++++..++|..+..++...++.+.+|..+|+|+|...
T Consensus 651 ~g~~vlvlvPt~~La~Q~~~~~~~~~~~~~i~v~~l~~~~~~~~~~~~~~~l~~g~~dIvV~T~~ll~~~~~~~~l~lvI 730 (1151)
T 2eyq_A 651 NHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLI 730 (1151)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHHSTTTTCCEEEESTTSCHHHHHHHHHHHHTTCCSEEEECTHHHHSCCCCSSEEEEE
T ss_pred hCCeEEEEechHHHHHHHHHHHHHHhhcCCCeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhCCccccccceEE
Confidence 5678999999999999999888742 6788899999998888888888888888888777544
Q ss_pred --------------------------------------------------------------------------------
Q psy437 95 -------------------------------------------------------------------------------- 94 (184)
Q Consensus 95 -------------------------------------------------------------------------------- 94 (184)
T Consensus 731 iDEaH~~g~~~~~~l~~l~~~~~vl~lSATp~p~~l~~~~~~~~~~~~i~~~~~~r~~i~~~~~~~~~~~i~~~il~~l~ 810 (1151)
T 2eyq_A 731 VDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDSMVVREAILREIL 810 (1151)
T ss_dssp EESGGGSCHHHHHHHHHHHTTSEEEEEESSCCCHHHHHHHTTTSEEEECCCCCCBCBCEEEEEEECCHHHHHHHHHHHHT
T ss_pred EechHhcChHHHHHHHHhcCCCCEEEEcCCCChhhHHHHHhcCCCceEEecCCCCccccEEEEecCCHHHHHHHHHHHHh
Confidence
Q ss_pred ------------ccHHHHHHHHHhc--CCcEEEeeCCCChHHHHHHHHHhhCCCceEEEE-------EecCCccEEEecC
Q psy437 95 ------------KECDSVAAALAQE--RINAISYHAGLADKLRNEVQMKWISNKVHLYNV-------WKIQWKRIIWIHS 153 (184)
Q Consensus 95 ------------~~~e~~a~gL~~~--gi~~~vih~~~p~~~r~~~~~~f~~~~~~v~va-------~D~~~vr~v~~~~ 153 (184)
..++.++..|... ++++.++|+++++..|..+.+.|++|+..|+|| +|+|++++|+.++
T Consensus 811 ~g~qvlvf~~~v~~~~~l~~~L~~~~p~~~v~~lhg~~~~~eR~~il~~F~~g~~~VLVaT~v~e~GiDip~v~~VIi~~ 890 (1151)
T 2eyq_A 811 RGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIER 890 (1151)
T ss_dssp TTCEEEEECCCSSCHHHHHHHHHHHCTTSCEEECCSSCCHHHHHHHHHHHHTTSCCEEEESSTTGGGSCCTTEEEEEETT
T ss_pred cCCeEEEEECCHHHHHHHHHHHHHhCCCCeEEEEeCCCCHHHHHHHHHHHHcCCCcEEEECCcceeeecccCCcEEEEeC
Confidence 4789999999765 888899999999999999999999999999999 6999999999888
Q ss_pred C-CCCccccccccccccCCcc
Q psy437 154 L-VLIKPDYLPPILDLRLGRE 173 (184)
Q Consensus 154 ~-p~~~e~y~~~i~~~~~~r~ 173 (184)
. +.+..+|+|+++ |+||.
T Consensus 891 ~~~~~l~~l~Qr~G--RvgR~ 909 (1151)
T 2eyq_A 891 ADHFGLAQLHQLRG--RVGRS 909 (1151)
T ss_dssp TTSSCHHHHHHHHT--TCCBT
T ss_pred CCCCCHHHHHHHHh--ccCcC
Confidence 7 457889999995 66664
No 92
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=99.25 E-value=1e-10 Score=103.37 Aligned_cols=85 Identities=14% Similarity=0.065 Sum_probs=78.2
Q ss_pred EEEEeecccHHHHHHHHHhcCCcEEEeeCCCChHHHHHHHHHhhC--CCceEEEE-------EecCCccEEEecCC----
Q psy437 88 GHWTVVSKECDSVAAALAQERINAISYHAGLADKLRNEVQMKWIS--NKVHLYNV-------WKIQWKRIIWIHSL---- 154 (184)
Q Consensus 88 lVaT~tr~~~e~~a~gL~~~gi~~~vih~~~p~~~r~~~~~~f~~--~~~~v~va-------~D~~~vr~v~~~~~---- 154 (184)
+|++.++++|+.++..|...|+.+.++|+++|+..|..+.+.|++ |+..|+|| +|+ ++++||++++
T Consensus 324 iIf~~s~~~ie~la~~L~~~g~~v~~lHG~L~~~~R~~~~~~F~~~~g~~~VLVATdi~e~GlDi-~v~~VI~~~~~k~~ 402 (677)
T 3rc3_A 324 CIVCFSKNDIYSVSRQIEIRGLESAVIYGSLPPGTKLAQAKKFNDPNDPCKILVATDAIGMGLNL-SIRRIIFYSLIKPS 402 (677)
T ss_dssp EEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHCTTSSCCEEEECGGGGSSCCC-CBSEEEESCSBC--
T ss_pred EEEEcCHHHHHHHHHHHHhcCCCeeeeeccCCHHHHHHHHHHHHccCCCeEEEEeCcHHHCCcCc-CccEEEECCccccc
Confidence 667888899999999999999999999999999999999999999 88999999 699 8999999999
Q ss_pred ----------CCCccccccccccccCCcccc
Q psy437 155 ----------VLIKPDYLPPILDLRLGREDI 175 (184)
Q Consensus 155 ----------p~~~e~y~~~i~~~~~~r~~~ 175 (184)
|.+..+|+|++ +|+||.+.
T Consensus 403 ~~~~G~~~~~p~s~~~~~QR~--GRAGR~g~ 431 (677)
T 3rc3_A 403 INEKGERELEPITTSQALQIA--GRAGRFSS 431 (677)
T ss_dssp ---------CBCCHHHHHHHH--TTBTCTTS
T ss_pred cccCCccccccCCHHHHHHHh--cCCCCCCC
Confidence 77899999999 58888754
No 93
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=99.24 E-value=2e-11 Score=109.52 Aligned_cols=138 Identities=8% Similarity=-0.020 Sum_probs=104.2
Q ss_pred CCCcEEEEeccHHHHHHHHHHHHhC--------CCeeEEecCCCCHHH-HH----HHHHHHhc-cCceEEEEEeecccHH
Q psy437 33 SGQSGIVYCLTRKECDSVAAALAQE--------RINAISYHAGLADKL-RN----EVQMKWIS-NKVHVGHWTVVSKECD 98 (184)
Q Consensus 33 ~~~~~IIf~~tr~~~e~la~~L~~~--------gi~~~~~hg~l~~~~-R~----~~~~~f~~-g~~~vlVaT~tr~~~e 98 (184)
+..+.|+++.|- ..+.+++++... ..++..++-.....+ .. .+++.... ...++||+++++++++
T Consensus 239 ~~~~iIl~SAT~-~~~~l~~~~~~~~vi~v~gr~~pv~~~~~~~~~~~~~~~~l~~l~~~~~~~~~g~iLVF~~~~~~i~ 317 (773)
T 2xau_A 239 PDLKIIIMSATL-DAEKFQRYFNDAPLLAVPGRTYPVELYYTPEFQRDYLDSAIRTVLQIHATEEAGDILLFLTGEDEIE 317 (773)
T ss_dssp TTCEEEEEESCS-CCHHHHHHTTSCCEEECCCCCCCEEEECCSSCCSCHHHHHHHHHHHHHHHSCSCEEEEECSCHHHHH
T ss_pred CCceEEEEeccc-cHHHHHHHhcCCCcccccCcccceEEEEecCCchhHHHHHHHHHHHHHHhcCCCCEEEECCCHHHHH
Confidence 456778887787 456777777532 123333332222111 11 22222222 4568999999999999
Q ss_pred HHHHHHHh-----------cCCcEEEeeCCCChHHHHHHHHHhh-----CCCceEEEE-------EecCCccEEEecCC-
Q psy437 99 SVAAALAQ-----------ERINAISYHAGLADKLRNEVQMKWI-----SNKVHLYNV-------WKIQWKRIIWIHSL- 154 (184)
Q Consensus 99 ~~a~gL~~-----------~gi~~~vih~~~p~~~r~~~~~~f~-----~~~~~v~va-------~D~~~vr~v~~~~~- 154 (184)
.++..|.. .++.+..+|+++|+..|..+.+.|. .|...|+|| +|+|+|++||++++
T Consensus 318 ~l~~~L~~~~~~l~~~~~~~~~~v~~lhg~l~~~eR~~v~~~f~~~~~~~g~~kVlVAT~iae~GidIp~v~~VId~g~~ 397 (773)
T 2xau_A 318 DAVRKISLEGDQLVREEGCGPLSVYPLYGSLPPHQQQRIFEPAPESHNGRPGRKVVISTNIAETSLTIDGIVYVVDPGFS 397 (773)
T ss_dssp HHHHHHHHHHHHHHHHHCCCCEEEEEECTTCCHHHHGGGGSCCCCCSSSSCCEEEEEECTHHHHTCCCTTEEEEEECSEE
T ss_pred HHHHHHHHHHHhhcccccCCCeEEEEeCCCCCHHHHHHHHhhcccccCCCCceEEEEeCcHHHhCcCcCCeEEEEeCCCc
Confidence 99999974 6888899999999999999999999 999999999 69999999999888
Q ss_pred -----------------CCCccccccccccccCCcc
Q psy437 155 -----------------VLIKPDYLPPILDLRLGRE 173 (184)
Q Consensus 155 -----------------p~~~e~y~~~i~~~~~~r~ 173 (184)
|.+..+|+|++ +|+||.
T Consensus 398 k~~~yd~~~g~~~L~~~p~S~~s~~QR~--GRaGR~ 431 (773)
T 2xau_A 398 KQKVYNPRIRVESLLVSPISKASAQQRA--GRAGRT 431 (773)
T ss_dssp EEEEEETTTTEEEEEEEECCHHHHHHHH--HGGGSS
T ss_pred cceeeccccCccccccccCCHHHHHhhc--cccCCC
Confidence 88999999999 588886
No 94
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=99.24 E-value=1.1e-11 Score=107.82 Aligned_cols=103 Identities=10% Similarity=0.103 Sum_probs=84.2
Q ss_pred HHHHHHhhcCCCcEEEEeccHHHHHHHHHHHHhCCCe--------eEEecCCCCHHHHHHHHHHHhccCce---EEEEEe
Q psy437 24 VISLIKAKYSGQSGIVYCLTRKECDSVAAALAQERIN--------AISYHAGLADKLRNEVQMKWISNKVH---VGHWTV 92 (184)
Q Consensus 24 L~~~l~~~~~~~~~IIf~~tr~~~e~la~~L~~~gi~--------~~~~hg~l~~~~R~~~~~~f~~g~~~---vlVaT~ 92 (184)
|.+.+.......++||||+++..|+.+++.|.+.+.. +..+||+++ ++|..++++|++|+.+ |||+|+
T Consensus 429 l~~~l~~~~~~~k~lVF~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~~i~g~~~-~~r~~~l~~F~~~~~~~~~ilvtt~ 507 (590)
T 3h1t_A 429 LTDFMKRTDRFAKTIVFCVDQEHADEMRRALNNLNSDLSRKHPDYVARVTSEEG-KIGKGHLSRFQELETSTPVILTTSQ 507 (590)
T ss_dssp HHHHHHHHCTTSEEEEEESSHHHHHHHHHHHHHHTHHHHTTCTTSEEECSSTTH-HHHHHHHHHHHCTTCCCCCEEEESS
T ss_pred HHHHHHhcCCCccEEEEECCHHHHHHHHHHHHHhhhhhhccCCCeEEEEeCCCh-HHHHHHHHHHhCCCCCCCEEEEECC
Confidence 3344444334578999999999999999999875432 677899875 4799999999998765 778888
Q ss_pred ecccHHHHHHHHHhcCCcEEEeeCCCChHHHHHHHHHhhCCC
Q psy437 93 VSKECDSVAAALAQERINAISYHAGLADKLRNEVQMKWISNK 134 (184)
Q Consensus 93 tr~~~e~~a~gL~~~gi~~~vih~~~p~~~r~~~~~~f~~~~ 134 (184)
.+++|+|.++++ .||+++.|.+...|+|+.+|.+.
T Consensus 508 ------~l~~GiDip~v~-~Vi~~~~~~s~~~~~Q~iGR~~R 542 (590)
T 3h1t_A 508 ------LLTTGVDAPTCK-NVVLARVVNSMSEFKQIVGRGTR 542 (590)
T ss_dssp ------TTTTTCCCTTEE-EEEEESCCCCHHHHHHHHTTSCC
T ss_pred ------hhhcCccchhee-EEEEEecCCChHHHHHHHhhhcc
Confidence 678899999998 89999999999999999977664
No 95
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=99.23 E-value=7.7e-13 Score=112.11 Aligned_cols=88 Identities=17% Similarity=0.125 Sum_probs=0.0
Q ss_pred CceEEEEEeecccHHHHHHHHHhcCCcEEEeeCCCChHHHHHHHHHhhCCCceEEEE-------EecCCccEEEecCCC-
Q psy437 84 KVHVGHWTVVSKECDSVAAALAQERINAISYHAGLADKLRNEVQMKWISNKVHLYNV-------WKIQWKRIIWIHSLV- 155 (184)
Q Consensus 84 ~~~vlVaT~tr~~~e~~a~gL~~~gi~~~vih~~~p~~~r~~~~~~f~~~~~~v~va-------~D~~~vr~v~~~~~p- 155 (184)
..++||+|++++.|+.++..|...++.+.++|+++++..|..+.+.|++|+..|+|+ +|+|++++||++++|
T Consensus 333 ~~~~lvF~~s~~~~~~l~~~L~~~~~~v~~lh~~~~~~~R~~~~~~f~~g~~~iLv~T~~~~~GlDip~v~~VI~~d~p~ 412 (479)
T 3fmp_B 333 IAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTNVCARGIDVEQVSVVINFDLPV 412 (479)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCceEEEeCcHHHHHHHHHHHHhCCccEEEecCCCCHHHHHHHHHHHHcCCCcEEEEccccccCCccccCCEEEEecCCC
Confidence 347999999999999999999999999999999999999999999999999999998 699999999999999
Q ss_pred -----CCccccccccccccCCcc
Q psy437 156 -----LIKPDYLPPILDLRLGRE 173 (184)
Q Consensus 156 -----~~~e~y~~~i~~~~~~r~ 173 (184)
.+.+.|+|+++ |+||.
T Consensus 413 ~~~~~~s~~~~~Qr~G--RagR~ 433 (479)
T 3fmp_B 413 DKDGNPDNETYLHRIG--RTGRF 433 (479)
T ss_dssp -----------------------
T ss_pred CCccCCCHHHHHHHhc--ccccC
Confidence 46789999995 66664
No 96
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=99.23 E-value=7.1e-12 Score=107.22 Aligned_cols=89 Identities=8% Similarity=0.019 Sum_probs=46.2
Q ss_pred ccCceEEEEEeecccHHHHHHHHHhc------------CCcEEEeeCCCChHHHHHHHHHhhC-CCceEEEE-------E
Q psy437 82 SNKVHVGHWTVVSKECDSVAAALAQE------------RINAISYHAGLADKLRNEVQMKWIS-NKVHLYNV-------W 141 (184)
Q Consensus 82 ~g~~~vlVaT~tr~~~e~~a~gL~~~------------gi~~~vih~~~p~~~r~~~~~~f~~-~~~~v~va-------~ 141 (184)
....++||+|+++..++.++..|... |.....+|+++|+..|..+.+.|++ |++.|+|+ +
T Consensus 388 ~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g~~~vLvaT~~~~~Gi 467 (556)
T 4a2p_A 388 NPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGI 467 (556)
T ss_dssp CTTCCEEEEESSHHHHHHHHHHHTTCSGGGSCCEEC------------------------------CCEEEEEC------
T ss_pred CCCceEEEEEccHHHHHHHHHHHHhCCCcceeeeeEEEccCCcccccccCHHHHHHHHHHhcccCceEEEEEcCchhcCC
Confidence 34568999999999999999999765 4555667889999999999999999 99999999 6
Q ss_pred ecCCccEEEecCCCCCccccccccccccCCcc
Q psy437 142 KIQWKRIIWIHSLVLIKPDYLPPILDLRLGRE 173 (184)
Q Consensus 142 D~~~vr~v~~~~~p~~~e~y~~~i~~~~~~r~ 173 (184)
|+|++++|||||+|.++..|+|+++ | ||.
T Consensus 468 Dip~v~~VI~~d~p~s~~~~~Qr~G--R-gR~ 496 (556)
T 4a2p_A 468 DIVQCNLVVLYEYSGNVTKMIQVRG--R-GRA 496 (556)
T ss_dssp -----CEEEEETCCSCHHHHHHC---------
T ss_pred CchhCCEEEEeCCCCCHHHHHHhcC--C-CCC
Confidence 9999999999999999999999996 5 776
No 97
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=99.20 E-value=2.4e-11 Score=97.40 Aligned_cols=86 Identities=15% Similarity=0.120 Sum_probs=78.5
Q ss_pred ccCceEEEEEeecccHHHHHHHHHhcCCcEEEeeCCCChHHHHHHHHHhhCCCceEEEE-------EecCCccEEEecCC
Q psy437 82 SNKVHVGHWTVVSKECDSVAAALAQERINAISYHAGLADKLRNEVQMKWISNKVHLYNV-------WKIQWKRIIWIHSL 154 (184)
Q Consensus 82 ~g~~~vlVaT~tr~~~e~~a~gL~~~gi~~~vih~~~p~~~r~~~~~~f~~~~~~v~va-------~D~~~vr~v~~~~~ 154 (184)
....++||+++++.+++.++..|. .+..+|+++|+..|..+.+.|++|+..|+|+ +|+|++++|+++++
T Consensus 218 ~~~~~~lvf~~~~~~~~~l~~~l~----~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gid~~~~~~Vi~~~~ 293 (337)
T 2z0m_A 218 NKDKGVIVFVRTRNRVAKLVRLFD----NAIELRGDLPQSVRNRNIDAFREGEYDMLITTDVASRGLDIPLVEKVINFDA 293 (337)
T ss_dssp CCCSSEEEECSCHHHHHHHHTTCT----TEEEECTTSCHHHHHHHHHHHHTTSCSEEEECHHHHTTCCCCCBSEEEESSC
T ss_pred CCCCcEEEEEcCHHHHHHHHHHhh----hhhhhcCCCCHHHHHHHHHHHHcCCCcEEEEcCccccCCCccCCCEEEEecC
Confidence 345679999999999999998887 4689999999999999999999999999999 69999999999999
Q ss_pred CCCccccccccccccCCcc
Q psy437 155 VLIKPDYLPPILDLRLGRE 173 (184)
Q Consensus 155 p~~~e~y~~~i~~~~~~r~ 173 (184)
|.+...|+|+++ |+||.
T Consensus 294 ~~s~~~~~Q~~G--R~gR~ 310 (337)
T 2z0m_A 294 PQDLRTYIHRIG--RTGRM 310 (337)
T ss_dssp CSSHHHHHHHHT--TBCGG
T ss_pred CCCHHHhhHhcC--ccccC
Confidence 999999999995 77775
No 98
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=99.17 E-value=2.4e-11 Score=104.07 Aligned_cols=101 Identities=10% Similarity=0.081 Sum_probs=76.6
Q ss_pred HHHHHHHHHHhc--cCceEEEEEeecccHHHHHHHHHhcCCcEEEeeCCCChHHHHHHHHHhhCCCceEEEE-------E
Q psy437 71 KLRNEVQMKWIS--NKVHVGHWTVVSKECDSVAAALAQERINAISYHAGLADKLRNEVQMKWISNKVHLYNV-------W 141 (184)
Q Consensus 71 ~~R~~~~~~f~~--g~~~vlVaT~tr~~~e~~a~gL~~~gi~~~vih~~~p~~~r~~~~~~f~~~~~~v~va-------~ 141 (184)
..+...+..+.. ...++||++++++.++.++..|...++.+..+|+++++..|..+.+.|++|+..|+|+ +
T Consensus 342 ~~k~~~l~~ll~~~~~~~~LVF~~s~~~a~~l~~~L~~~~~~v~~~hg~~~~~~R~~il~~f~~g~~~VLVaT~~l~~Gi 421 (508)
T 3fho_A 342 EHKYNVLVELYGLLTIGQSIIFCKKKDTAEEIARRMTADGHTVACLTGNLEGAQRDAIMDSFRVGTSKVLVTTNVIARGI 421 (508)
T ss_dssp HHHHHHHHHHHC---CCCEEEBCSSTTTTTHHHHHHTTTTCCCCEEC-----CTTGGGTHHHHSSSCCCCEECC-----C
T ss_pred HHHHHHHHHHHHhcCCCcEEEEECCHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHHCCCCeEEEeCChhhcCC
Confidence 344444444443 3458999999999999999999999999999999999999999999999999999999 5
Q ss_pred ecCCccEEEecCCC------CCccccccccccccCCcc
Q psy437 142 KIQWKRIIWIHSLV------LIKPDYLPPILDLRLGRE 173 (184)
Q Consensus 142 D~~~vr~v~~~~~p------~~~e~y~~~i~~~~~~r~ 173 (184)
|+|++++|+++++| .+...|+|+++ |+||.
T Consensus 422 Dip~v~~VI~~~~p~~~~~~~s~~~~~Qr~G--RagR~ 457 (508)
T 3fho_A 422 DVSQVNLVVNYDMPLDQAGRPDPQTYLHRIG--RTGRF 457 (508)
T ss_dssp CCTTCCEEEC----CC-----CTHHHHHTTS--CCC--
T ss_pred CccCCCEEEEECCCCcccCCCCHHHHHHHhh--hcCCC
Confidence 99999999999999 88999999995 66664
No 99
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=99.16 E-value=4.4e-11 Score=106.93 Aligned_cols=88 Identities=10% Similarity=-0.136 Sum_probs=77.6
Q ss_pred CceEEEEEeecccHHHHHHHHHhcCCcEEEeeCCCChHHHHHHHHHhhCCCceEEEE-------EecC--------CccE
Q psy437 84 KVHVGHWTVVSKECDSVAAALAQERINAISYHAGLADKLRNEVQMKWISNKVHLYNV-------WKIQ--------WKRI 148 (184)
Q Consensus 84 ~~~vlVaT~tr~~~e~~a~gL~~~gi~~~vih~~~p~~~r~~~~~~f~~~~~~v~va-------~D~~--------~vr~ 148 (184)
.-++||+|.+...+|.++..|...|+++.++|+++++..+..+.+.|+.| .|+|| .|++ ++.+
T Consensus 432 ~~pvLVft~s~~~se~Ls~~L~~~gi~~~vLhg~~~~rEr~ii~~ag~~g--~VlIATdmAgRG~DI~l~~~V~~~ggl~ 509 (844)
T 1tf5_A 432 GQPVLVGTVAVETSELISKLLKNKGIPHQVLNAKNHEREAQIIEEAGQKG--AVTIATNMAGRGTDIKLGEGVKELGGLA 509 (844)
T ss_dssp TCCEEEEESCHHHHHHHHHHHHTTTCCCEEECSSCHHHHHHHHTTTTSTT--CEEEEETTSSTTCCCCCCTTSGGGTSEE
T ss_pred CCcEEEEECCHHHHHHHHHHHHHCCCCEEEeeCCccHHHHHHHHHcCCCC--eEEEeCCccccCcCccccchhhhcCCcE
Confidence 34799999999999999999999999999999999999888777777666 57888 6999 7889
Q ss_pred EEecCCCCCcccccccccc-ccCCcc
Q psy437 149 IWIHSLVLIKPDYLPPILD-LRLGRE 173 (184)
Q Consensus 149 v~~~~~p~~~e~y~~~i~~-~~~~r~ 173 (184)
|||+++|.+.+.|+|++++ +|.|+.
T Consensus 510 VIn~d~p~s~r~y~hr~GRTGRqG~~ 535 (844)
T 1tf5_A 510 VVGTERHESRRIDNQLRGRSGRQGDP 535 (844)
T ss_dssp EEESSCCSSHHHHHHHHTTSSGGGCC
T ss_pred EEEecCCCCHHHHHhhcCccccCCCC
Confidence 9999999999999999976 366665
No 100
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=99.16 E-value=3.4e-11 Score=102.42 Aligned_cols=107 Identities=12% Similarity=0.033 Sum_probs=89.0
Q ss_pred ChHHHHHHHHHhh-cCCCcEEEEeccHHHHHHHHHHHHhC-CCeeEEecCCCCHHHHHHHHHHHhcc-Cce-EEEEEeec
Q psy437 19 NVLKEVISLIKAK-YSGQSGIVYCLTRKECDSVAAALAQE-RINAISYHAGLADKLRNEVQMKWISN-KVH-VGHWTVVS 94 (184)
Q Consensus 19 ~k~~~L~~~l~~~-~~~~~~IIf~~tr~~~e~la~~L~~~-gi~~~~~hg~l~~~~R~~~~~~f~~g-~~~-vlVaT~tr 94 (184)
.|...+.+++.+. ..+.++||||+++..++.++..|... |+++..+||++++++|.+++++|.++ ..+ +|++|.
T Consensus 325 ~K~~~l~~~l~~~~~~~~k~lvF~~~~~~~~~l~~~l~~~~~~~~~~~~g~~~~~~R~~~~~~F~~~~~~~vil~st~-- 402 (500)
T 1z63_A 325 GKMIRTMEIIEEALDEGDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLSVK-- 402 (500)
T ss_dssp HHHHHHHHHHHHHHTTTCCEEEECSCHHHHHHHHHHHHHHHTCCCCEEETTSCHHHHHHHHHHHHHCTTCCCCEEECC--
T ss_pred hhHHHHHHHHHHHHccCCcEEEEEehHHHHHHHHHHHHHhhCCCeEEEECCCCHHHHHHHHHHhcCCCCCCEEEEecc--
Confidence 4777777777653 25678999999999999999999885 99999999999999999999999998 555 688888
Q ss_pred ccHHHHHHHHHhcCCcEEEeeCCCChHHHHHHHHHhhC
Q psy437 95 KECDSVAAALAQERINAISYHAGLADKLRNEVQMKWIS 132 (184)
Q Consensus 95 ~~~e~~a~gL~~~gi~~~vih~~~p~~~r~~~~~~f~~ 132 (184)
..+.||+.++++ .||++++|-+...+.|+..|.
T Consensus 403 ----~~~~Glnl~~~~-~vi~~d~~~~~~~~~Q~~gR~ 435 (500)
T 1z63_A 403 ----AGGFGINLTSAN-RVIHFDRWWNPAVEDQATDRV 435 (500)
T ss_dssp ----CC-CCCCCTTCS-EEEESSCCSCC---CHHHHTT
T ss_pred ----cccCCCchhhCC-EEEEeCCCCCcchHHHHHHHH
Confidence 557799999999 999999999999999998654
No 101
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=99.15 E-value=3.5e-10 Score=100.42 Aligned_cols=141 Identities=16% Similarity=0.105 Sum_probs=103.0
Q ss_pred CCCcEEEEeccHHHHHHHHHHHHhC-------CCee--EEecCC------------CC------HHHHHHHHHHHhccCc
Q psy437 33 SGQSGIVYCLTRKECDSVAAALAQE-------RINA--ISYHAG------------LA------DKLRNEVQMKWISNKV 85 (184)
Q Consensus 33 ~~~~~IIf~~tr~~~e~la~~L~~~-------gi~~--~~~hg~------------l~------~~~R~~~~~~f~~g~~ 85 (184)
+..+.|.++.|-..++.++++|... .++. ..+..+ .+ .......+........
T Consensus 174 ~~~~ii~lSATl~n~~~~~~~l~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (715)
T 2va8_A 174 KRRNLLALSATISNYKQIAKWLGAEPVATNWRPVPLIEGVIYPERKKKEYNVIFKDNTTKKVHGDDAIIAYTLDSLSKNG 253 (715)
T ss_dssp HTSEEEEEESCCTTHHHHHHHHTCEEEECCCCSSCEEEEEEEECSSTTEEEEEETTSCEEEEESSSHHHHHHHHHHTTTC
T ss_pred ccCcEEEEcCCCCCHHHHHHHhCCCccCCCCCCCCceEEEEecCCcccceeeecCcchhhhcccchHHHHHHHHHHhcCC
Confidence 3567788889987789999999632 1111 111111 00 1233444444445567
Q ss_pred eEEEEEeecccHHHHHHHHHhcC------------------------------------CcEEEeeCCCChHHHHHHHHH
Q psy437 86 HVGHWTVVSKECDSVAAALAQER------------------------------------INAISYHAGLADKLRNEVQMK 129 (184)
Q Consensus 86 ~vlVaT~tr~~~e~~a~gL~~~g------------------------------------i~~~vih~~~p~~~r~~~~~~ 129 (184)
++||+++++++|+.+|..|.... ..+.++|+++|+..|..+.+.
T Consensus 254 ~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~r~~v~~~ 333 (715)
T 2va8_A 254 QVLVFRNSRKMAESTALKIANYMNFVSLDENALSEILKQLDDIEEGGSDEKELLKSLISKGVAYHHAGLSKALRDLIEEG 333 (715)
T ss_dssp CEEEECSSHHHHHHHHHHHHHTTTSSCCCHHHHHHHHHHHHTCCSSCHHHHHHHHHHHTTTEEEECTTSCHHHHHHHHHH
T ss_pred CEEEEECCHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHhhhccccccHHHHHHHhcCEEEECCCCCHHHHHHHHHH
Confidence 89999999999999999996431 236889999999999999999
Q ss_pred hhCCCceEEEE-------EecCCccEEEe----cC-------CCCCccccccccccccCCcccc
Q psy437 130 WISNKVHLYNV-------WKIQWKRIIWI----HS-------LVLIKPDYLPPILDLRLGREDI 175 (184)
Q Consensus 130 f~~~~~~v~va-------~D~~~vr~v~~----~~-------~p~~~e~y~~~i~~~~~~r~~~ 175 (184)
|++|.++|+|| +|+|+++.||+ |+ .|.+..+|+|++ +|+||.+.
T Consensus 334 f~~g~~~vlvaT~~l~~Gidip~~~~VI~~~~~~d~~~~~~~~~~s~~~~~Qr~--GRaGR~g~ 395 (715)
T 2va8_A 334 FRQRKIKVIVATPTLAAGVNLPARTVIIGDIYRFNKKIAGYYDEIPIMEYKQMS--GRAGRPGF 395 (715)
T ss_dssp HHTTCSCEEEECGGGGGSSCCCBSEEEECCC--------------CHHHHHHHH--TTBCCTTT
T ss_pred HHcCCCeEEEEChHHhcccCCCceEEEEeCCeeccccCCCCCCcCCHHHHHHHh--hhcCCCCC
Confidence 99999999999 59999999999 98 899999999999 58888654
No 102
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=99.14 E-value=4.9e-11 Score=99.36 Aligned_cols=90 Identities=11% Similarity=0.134 Sum_probs=81.3
Q ss_pred cCceEEEEEeecccHHHHHHHHHhcCCcEEEeeC--------CCChHHHHHHHHHhhCCCceEEEE-------EecCCcc
Q psy437 83 NKVHVGHWTVVSKECDSVAAALAQERINAISYHA--------GLADKLRNEVQMKWISNKVHLYNV-------WKIQWKR 147 (184)
Q Consensus 83 g~~~vlVaT~tr~~~e~~a~gL~~~gi~~~vih~--------~~p~~~r~~~~~~f~~~~~~v~va-------~D~~~vr 147 (184)
...++||+|+++..++.++..|...|+++..+|+ +++...|..+.+.|++|+..|+++ +|+|+++
T Consensus 360 ~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~~~~~~~~~r~~~~~~F~~~~~~vLv~T~~~~~Gldl~~~~ 439 (494)
T 1wp9_A 360 QNSKIIVFTNYRETAKKIVNELVKDGIKAKRFVGQASKENDRGLSQREQKLILDEFARGEFNVLVATSVGEEGLDVPEVD 439 (494)
T ss_dssp TTCCEEEECSCHHHHHHHHHHHHHTTCCEEEECCSSCC-------CCHHHHHHHHHHHTSCSEEEECGGGGGGGGSTTCC
T ss_pred CCCeEEEEEccHHHHHHHHHHHHHcCCCcEEEeccccccccccCCHHHHHHHHHHHhcCCceEEEECCccccCCCchhCC
Confidence 4668999999999999999999999999999999 999999999999999999999999 6999999
Q ss_pred EEEecCCCCCccccccccccccCCccc
Q psy437 148 IIWIHSLVLIKPDYLPPILDLRLGRED 174 (184)
Q Consensus 148 ~v~~~~~p~~~e~y~~~i~~~~~~r~~ 174 (184)
+|+++++|.++..|+|++ +|+||.+
T Consensus 440 ~Vi~~d~~~~~~~~~Qr~--GR~~R~g 464 (494)
T 1wp9_A 440 LVVFYEPVPSAIRSIQRR--GRTGRHM 464 (494)
T ss_dssp EEEESSCCHHHHHHHHHH--TTSCSCC
T ss_pred EEEEeCCCCCHHHHHHHH--hhccCCC
Confidence 999999999999999999 5777753
No 103
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=99.13 E-value=2e-10 Score=101.79 Aligned_cols=153 Identities=16% Similarity=0.168 Sum_probs=109.5
Q ss_pred HHHHHHHHHhhcCCCcEEEEeccHHHHHHHHHHHHhC-------CCeeE--EecCCC---CH-H-------HHHHHHHHH
Q psy437 21 LKEVISLIKAKYSGQSGIVYCLTRKECDSVAAALAQE-------RINAI--SYHAGL---AD-K-------LRNEVQMKW 80 (184)
Q Consensus 21 ~~~L~~~l~~~~~~~~~IIf~~tr~~~e~la~~L~~~-------gi~~~--~~hg~l---~~-~-------~R~~~~~~f 80 (184)
.+.++..++...+..+.|.++.|-..++.++++|... .++.. .+..+. .. . .....+.+.
T Consensus 159 ~~~ll~~l~~~~~~~~ii~lSATl~n~~~~~~~l~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (702)
T 2p6r_A 159 LEILVTKMRRMNKALRVIGLSATAPNVTEIAEWLDADYYVSDWRPVPLVEGVLCEGTLELFDGAFSTSRRVKFEELVEEC 238 (702)
T ss_dssp HHHHHHHHHHHCTTCEEEEEECCCTTHHHHHHHTTCEEEECCCCSSCEEEEEECSSEEEEEETTEEEEEECCHHHHHHHH
T ss_pred HHHHHHHHHhcCcCceEEEECCCcCCHHHHHHHhCCCcccCCCCCccceEEEeeCCeeeccCcchhhhhhhhHHHHHHHH
Confidence 3444444543324567788889988788999988631 11111 111110 00 0 033344444
Q ss_pred hccCceEEEEEeecccHHHHHHHHHhc------------------------------CCcEEEeeCCCChHHHHHHHHHh
Q psy437 81 ISNKVHVGHWTVVSKECDSVAAALAQE------------------------------RINAISYHAGLADKLRNEVQMKW 130 (184)
Q Consensus 81 ~~g~~~vlVaT~tr~~~e~~a~gL~~~------------------------------gi~~~vih~~~p~~~r~~~~~~f 130 (184)
.+...++||+++++++|+.+|..|... +..+..+|+++|++.|..+.+.|
T Consensus 239 ~~~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~~f 318 (702)
T 2p6r_A 239 VAENGGVLVFESTRRGAEKTAVKLSAITAKYVENEGLEKAILEENEGEMSRKLAECVRKGAAFHHAGLLNGQRRVVEDAF 318 (702)
T ss_dssp HHTTCCEEEECSSHHHHHHHHHHHHHHHHTTCCCSSHHHHHHTTCCSHHHHHHHHHHHTTCCEECTTSCHHHHHHHHHHH
T ss_pred HhcCCCEEEEcCCHHHHHHHHHHHHHHHHhhcChHHHHHHHHhhccccccHHHHHHHhcCeEEecCCCCHHHHHHHHHHH
Confidence 445668999999999999999988642 12357899999999999999999
Q ss_pred hCCCceEEEE-------EecCCccEEEe----cC---CCCCccccccccccccCCcccc
Q psy437 131 ISNKVHLYNV-------WKIQWKRIIWI----HS---LVLIKPDYLPPILDLRLGREDI 175 (184)
Q Consensus 131 ~~~~~~v~va-------~D~~~vr~v~~----~~---~p~~~e~y~~~i~~~~~~r~~~ 175 (184)
++|.++|+|| +|+|+++.||+ || .|.+..+|+|++ +|+||.+.
T Consensus 319 ~~g~~~vlvaT~~l~~Gidip~~~~VI~~~~~yd~~~~~~s~~~~~Qr~--GRaGR~g~ 375 (702)
T 2p6r_A 319 RRGNIKVVVATPTLAAGVNLPARRVIVRSLYRFDGYSKRIKVSEYKQMA--GRAGRPGM 375 (702)
T ss_dssp HTTSCCEEEECSTTTSSSCCCBSEEEECCSEEESSSEEECCHHHHHHHH--TTBSCTTT
T ss_pred HCCCCeEEEECcHHhccCCCCceEEEEcCceeeCCCCCcCCHHHHHHHh--hhcCCCCC
Confidence 9999999999 59999999999 65 789999999999 58888654
No 104
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=99.12 E-value=4.9e-11 Score=108.97 Aligned_cols=88 Identities=8% Similarity=0.015 Sum_probs=51.0
Q ss_pred cCceEEEEEeecccHHHHHHHHHhc------------CCcEEEeeCCCChHHHHHHHHHhhC-CCceEEEE-------Ee
Q psy437 83 NKVHVGHWTVVSKECDSVAAALAQE------------RINAISYHAGLADKLRNEVQMKWIS-NKVHLYNV-------WK 142 (184)
Q Consensus 83 g~~~vlVaT~tr~~~e~~a~gL~~~------------gi~~~vih~~~p~~~r~~~~~~f~~-~~~~v~va-------~D 142 (184)
...++||+|.++.+++.++..|... |.....+|+++++..|..+.+.|++ |.+.|+|+ +|
T Consensus 630 ~~~rvLIF~~t~~~ae~L~~~L~~~~~l~~ik~~~l~G~~~~~~hg~m~~~eR~~il~~Fr~~g~~~VLVaT~~~~eGID 709 (936)
T 4a2w_A 630 PQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGID 709 (936)
T ss_dssp TTCCEEEEESSHHHHHHHHHHHHHCSTTSSCCCEEC----------------------------CCSEEEEECC------
T ss_pred CCCeEEEEeCCHHHHHHHHHHHhhCccccccceeEEecCCCcccCCCCCHHHHHHHHHHhhccCCeeEEEEeCchhcCCc
Confidence 3468999999999999999999876 5555677999999999999999999 99999999 69
Q ss_pred cCCccEEEecCCCCCccccccccccccCCcc
Q psy437 143 IQWKRIIWIHSLVLIKPDYLPPILDLRLGRE 173 (184)
Q Consensus 143 ~~~vr~v~~~~~p~~~e~y~~~i~~~~~~r~ 173 (184)
+|++++|||||+|.++..|+|+++ | ||.
T Consensus 710 lp~v~~VI~yD~p~s~~~~iQr~G--R-GR~ 737 (936)
T 4a2w_A 710 IVQCNLVVLYEYSGNVTKMIQVRG--R-GRA 737 (936)
T ss_dssp CCCCSEEEEESCCSCSHHHHCC---------
T ss_pred chhCCEEEEeCCCCCHHHHHHhcC--C-CCC
Confidence 999999999999999999999996 5 776
No 105
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=99.12 E-value=4.5e-12 Score=113.58 Aligned_cols=121 Identities=12% Similarity=0.187 Sum_probs=93.3
Q ss_pred CCCCeEEEEEEccChHHHHHHHHHhh-cCCCcEEEEeccH--------HHHHHHHHHHHh---CCCeeEEecCCCCHHHH
Q psy437 6 NRANLKYEILPKKNVLKEVISLIKAK-YSGQSGIVYCLTR--------KECDSVAAALAQ---ERINAISYHAGLADKLR 73 (184)
Q Consensus 6 ~R~Nl~y~v~~~~~k~~~L~~~l~~~-~~~~~~IIf~~tr--------~~~e~la~~L~~---~gi~~~~~hg~l~~~~R 73 (184)
.|.++...+.+. .+...+.+.+.+. ..+.+++|||++. ..++.+++.|.+ .++.+..+||+|++++|
T Consensus 550 ~r~~i~~~~~~~-~~~~~l~~~i~~~l~~g~qvlVf~~~ie~se~l~~~~a~~l~~~L~~~~~~~~~v~~lHG~m~~~eR 628 (780)
T 1gm5_A 550 GRKEVQTMLVPM-DRVNEVYEFVRQEVMRGGQAFIVYPLIEESDKLNVKSAVEMYEYLSKEVFPEFKLGLMHGRLSQEEK 628 (780)
T ss_dssp SCCCCEECCCCS-STHHHHHHHHHHHTTTSCCBCCBCCCC--------CHHHHHHHSGGGSCC---CBCCCCSSSCCSCS
T ss_pred CCcceEEEEecc-chHHHHHHHHHHHHhcCCcEEEEecchhhhhhhhHHHHHHHHHHHHhhhcCCCcEEEEeCCCCHHHH
Confidence 345554433333 3445566666543 2567899999865 457888899988 57889999999999999
Q ss_pred HHHHHHHhccCceEEEEEeecccHHHHHHHHHhcCCcEEEeeCCCCh-HHHHHHHHHhhCCC
Q psy437 74 NEVQMKWISNKVHVGHWTVVSKECDSVAAALAQERINAISYHAGLAD-KLRNEVQMKWISNK 134 (184)
Q Consensus 74 ~~~~~~f~~g~~~vlVaT~tr~~~e~~a~gL~~~gi~~~vih~~~p~-~~r~~~~~~f~~~~ 134 (184)
..++++|++|+.+|||||+ .+++|+|.++++ +|++++.|. +...+.|+.+|.|.
T Consensus 629 ~~v~~~F~~G~~~ILVaT~------vie~GIDiP~v~-~VIi~d~~r~~l~~l~Qr~GRaGR 683 (780)
T 1gm5_A 629 DRVMLEFAEGRYDILVSTT------VIEVGIDVPRAN-VMVIENPERFGLAQLHQLRGRVGR 683 (780)
T ss_dssp HHHHHHHTTTSSSBCCCSS------CCCSCSCCTTCC-EEEBCSCSSSCTTHHHHHHHTSCC
T ss_pred HHHHHHHHCCCCeEEEECC------CCCccccCCCCC-EEEEeCCCCCCHHHHHHHhcccCc
Confidence 9999999999999999999 778899999999 999999996 57778888877654
No 106
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=99.12 E-value=5.6e-11 Score=106.84 Aligned_cols=88 Identities=8% Similarity=0.015 Sum_probs=49.6
Q ss_pred cCceEEEEEeecccHHHHHHHHHhc------------CCcEEEeeCCCChHHHHHHHHHhhC-CCceEEEE-------Ee
Q psy437 83 NKVHVGHWTVVSKECDSVAAALAQE------------RINAISYHAGLADKLRNEVQMKWIS-NKVHLYNV-------WK 142 (184)
Q Consensus 83 g~~~vlVaT~tr~~~e~~a~gL~~~------------gi~~~vih~~~p~~~r~~~~~~f~~-~~~~v~va-------~D 142 (184)
...++||+|.++..++.++..|... |..+..+|+++++..|..+.+.|++ |.+.|+|+ +|
T Consensus 630 ~~~kvLIF~~~~~~~~~L~~~L~~~~~~~~~~~~~l~G~~~~~~hg~~~~~eR~~~l~~F~~~g~~~vLVaT~~~~~GID 709 (797)
T 4a2q_A 630 PQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGID 709 (797)
T ss_dssp SSCCEEEEESSHHHHHHHHHHHHTCSTTCSCCCEEC----------------------------CCSEEEEECC------
T ss_pred CCCeEEEEECcHHHHHHHHHHHHhCcccccccceEEEecCCcccCCCCCHHHHHHHHHHhhccCCceEEEEcCchhcCCC
Confidence 3478999999999999999999763 5555678999999999999999999 99999999 69
Q ss_pred cCCccEEEecCCCCCccccccccccccCCcc
Q psy437 143 IQWKRIIWIHSLVLIKPDYLPPILDLRLGRE 173 (184)
Q Consensus 143 ~~~vr~v~~~~~p~~~e~y~~~i~~~~~~r~ 173 (184)
+|++++||||++|.++..|+|+++ | ||.
T Consensus 710 lp~v~~VI~yd~p~s~~~~iQr~G--R-GR~ 737 (797)
T 4a2q_A 710 IVQCNLVVLYEYSGNVTKMIQVRG--R-GRA 737 (797)
T ss_dssp -CCCSEEEEESCCSCHHHHHTC---------
T ss_pred chhCCEEEEeCCCCCHHHHHHhcC--C-CCC
Confidence 999999999999999999999996 5 776
No 107
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=99.12 E-value=5.3e-10 Score=103.64 Aligned_cols=63 Identities=6% Similarity=-0.010 Sum_probs=55.0
Q ss_pred EEEEeecccHHHHHHHHHhcCCcEE-EeeCCCChHHHHHHHHHhhCCCceEEEE-----------EecCC-ccEEEecCC
Q psy437 88 GHWTVVSKECDSVAAALAQERINAI-SYHAGLADKLRNEVQMKWISNKVHLYNV-----------WKIQW-KRIIWIHSL 154 (184)
Q Consensus 88 lVaT~tr~~~e~~a~gL~~~gi~~~-vih~~~p~~~r~~~~~~f~~~~~~v~va-----------~D~~~-vr~v~~~~~ 154 (184)
||++++++.|+.++..|...|+++. .+|++ |.. .+.|++|+..|+|+ +|+|+ |++|||+|+
T Consensus 313 LVF~~s~~~a~~l~~~L~~~g~~~~~~lhg~-----rr~-l~~F~~G~~~VLVatas~TdvlarGIDip~~V~~VI~~d~ 386 (1104)
T 4ddu_A 313 LIFAQTEEEGKELYEYLKRFKFNVGETWSEF-----EKN-FEDFKVGKINILIGVQAYYGKLTRGVDLPERIKYVIFWGT 386 (1104)
T ss_dssp EEEESSSHHHHHHHHHHHHTTCCEEESSSSH-----HHH-HHHHHHTSCSEEEEETTTHHHHCCSCCCTTTCCEEEEESC
T ss_pred EEEECcHHHHHHHHHHHHhCCCCeeeEecCc-----HHH-HHHHHCCCCCEEEEecCCCCeeEecCcCCCCCCEEEEECC
Confidence 6677777889999999999999987 88883 444 89999999999999 39999 999999999
Q ss_pred CC
Q psy437 155 VL 156 (184)
Q Consensus 155 p~ 156 (184)
|+
T Consensus 387 P~ 388 (1104)
T 4ddu_A 387 PS 388 (1104)
T ss_dssp CE
T ss_pred CC
Confidence 99
No 108
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=99.10 E-value=1.1e-10 Score=112.04 Aligned_cols=96 Identities=17% Similarity=0.091 Sum_probs=82.1
Q ss_pred cCCCcEEEEeccHHHHHHHHHHHHhC-------------------------------------CCeeEEecCCCCHHHHH
Q psy437 32 YSGQSGIVYCLTRKECDSVAAALAQE-------------------------------------RINAISYHAGLADKLRN 74 (184)
Q Consensus 32 ~~~~~~IIf~~tr~~~e~la~~L~~~-------------------------------------gi~~~~~hg~l~~~~R~ 74 (184)
..+.++||||+||+.|+.+|..|.+. ...++++||||++++|.
T Consensus 315 ~~~~~~LVF~~sR~~~~~~A~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Gva~HHagL~~~~R~ 394 (1724)
T 4f92_B 315 AGKNQVLVFVHSRKETGKTARAIRDMCLEKDTLGLFLREGSASTEVLRTEAEQCKNLELKDLLPYGFAIHHAGMTRVDRT 394 (1724)
T ss_dssp CSSCCEEEECSSTTTTHHHHHHHHHHHHHTTSTTCCSSCCTTCSSHHHHTTSCCSTHHHHHHTTTTEEEECSSSCTHHHH
T ss_pred hcCCcEEEECCCHHHHHHHHHHHHHHHhhccchhhhcccchhHHHHHHhhhcccccHHHHHHhhcCEEEEcCCCCHHHHH
Confidence 35678999999999999999888531 12378899999999999
Q ss_pred HHHHHHhccCceEEEEEeecccHHHHHHHHHhcCCcEEEeeC----------CCChHHHHHHHHHhhCCC
Q psy437 75 EVQMKWISNKVHVGHWTVVSKECDSVAAALAQERINAISYHA----------GLADKLRNEVQMKWISNK 134 (184)
Q Consensus 75 ~~~~~f~~g~~~vlVaT~tr~~~e~~a~gL~~~gi~~~vih~----------~~p~~~r~~~~~~f~~~~ 134 (184)
.+.+.|++|..+|||||+ .+|.|++.+.++ +|+++ ..|-+..+|.|+.+|.|.
T Consensus 395 ~vE~~F~~G~i~vlvaTs------TLa~GVNlPa~~-vVI~~~~~~~~~~~~~~~ls~~~~~Qm~GRAGR 457 (1724)
T 4f92_B 395 LVEDLFADKHIQVLVSTA------TLAWGVNLPAHT-VIIKGTQVYSPEKGRWTELGALDILQMLGRAGR 457 (1724)
T ss_dssp HHHHHHHTTCCCEEEECH------HHHHHSCCCBSE-EEEECCEEEETTTTEEEECCHHHHHHHHTTBSC
T ss_pred HHHHHHHCCCCeEEEEcc------hhHhhCCCCCce-EEEeCCEEecCcCCCcccCCHHHHHHhhhhccC
Confidence 999999999999999999 889999999998 77763 246688999999988775
No 109
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=99.09 E-value=4.2e-10 Score=104.36 Aligned_cols=98 Identities=13% Similarity=0.205 Sum_probs=77.9
Q ss_pred HHHHHhc-cCceEEEEEeecccHHHHHHHHHhcCCc---------------------------------------EEEee
Q psy437 76 VQMKWIS-NKVHVGHWTVVSKECDSVAAALAQERIN---------------------------------------AISYH 115 (184)
Q Consensus 76 ~~~~f~~-g~~~vlVaT~tr~~~e~~a~gL~~~gi~---------------------------------------~~vih 115 (184)
++..+.. +..++||+++++..|+.++..|...++. +.++|
T Consensus 432 li~~l~~~~~~~vIVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gV~~~H 511 (1108)
T 3l9o_A 432 IVKMIWKKKYNPVIVFSFSKRDCEELALKMSKLDFNSDDEKEALTKIFNNAIALLPETDRELPQIKHILPLLRRGIGIHH 511 (1108)
T ss_dssp HHHHHHHTTCCCEEEEESCHHHHHHHHHHTCSHHHHCC----CHHHHGGGSCTHHHHHTTCCHHHHHHTHHHHHTEEEEC
T ss_pred HHHHHHhcCCCCEEEEeCcHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHhhcchhhhhhhhHHHHHHhhhcCeeeec
Confidence 4444433 4458999999999999999988543322 58899
Q ss_pred CCCChHHHHHHHHHhhCCCceEEEE-------EecCCccEEEecCCCCCcc--------ccccccccccCCcccc
Q psy437 116 AGLADKLRNEVQMKWISNKVHLYNV-------WKIQWKRIIWIHSLVLIKP--------DYLPPILDLRLGREDI 175 (184)
Q Consensus 116 ~~~p~~~r~~~~~~f~~~~~~v~va-------~D~~~vr~v~~~~~p~~~e--------~y~~~i~~~~~~r~~~ 175 (184)
++|++..|..+.+.|++|.+.|+|| +|+|++++||+++.|.+.+ +|+|++ +|+||.+.
T Consensus 512 g~l~~~~R~~v~~~F~~G~ikVLVAT~vla~GIDiP~v~~VI~~~~~~d~~~~r~iS~~eyiQr~--GRAGR~G~ 584 (1108)
T 3l9o_A 512 SGLLPILKEVIEILFQEGFLKVLFATETFSIGLNMPAKTVVFTSVRKWDGQQFRWVSGGEYIQMS--GRAGRRGL 584 (1108)
T ss_dssp SCSCHHHHHHHHHHHHHTCCCEEEEESCCCSCCCC--CEEEESCSEEESSSCEEECCHHHHHHHH--HHSCCSSS
T ss_pred CCCCHHHHHHHHHHHhCCCCeEEEECcHHhcCCCCCCceEEEecCcccCccccccCCHHHHHHhh--cccCCCCC
Confidence 9999999999999999999999999 5999999999888755544 599999 47777653
No 110
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=99.09 E-value=2.4e-11 Score=107.42 Aligned_cols=156 Identities=9% Similarity=0.016 Sum_probs=106.7
Q ss_pred CCeEEEEEEccChH----HHHHHHHHhhc--CCCcEEEEeccHHHHHHHHHHHHhCCCeeEEecCCCCHHHHHHHHHHHh
Q psy437 8 ANLKYEILPKKNVL----KEVISLIKAKY--SGQSGIVYCLTRKECDSVAAALAQERINAISYHAGLADKLRNEVQMKWI 81 (184)
Q Consensus 8 ~Nl~y~v~~~~~k~----~~L~~~l~~~~--~~~~~IIf~~tr~~~e~la~~L~~~gi~~~~~hg~l~~~~R~~~~~~f~ 81 (184)
.|+.+.|..+...+ .....++.+.. ...+.|.|+.|.... + ..+.....+...+....+.......+....
T Consensus 331 ~~l~lvViDEaH~~~~~~~~~~~~l~~~~~~~~~~vl~~SAT~~~~--i-~~~~~~~~~i~~v~~~~~~~~~~~~l~~l~ 407 (673)
T 2wv9_A 331 PNYNLFVMDEAHFTDPASIAARGYIATRVEAGEAAAIFMTATPPGT--S-DPFPDTNSPVHDVSSEIPDRAWSSGFEWIT 407 (673)
T ss_dssp CCCSEEEEESTTCCCHHHHHHHHHHHHHHHTTSCEEEEECSSCTTC--C-CSSCCCSSCEEEEECCCCSSCCSSCCHHHH
T ss_pred ccceEEEEeCCcccCccHHHHHHHHHHhccccCCcEEEEcCCCChh--h-hhhcccCCceEEEeeecCHHHHHHHHHHHH
Confidence 56777777765432 12223332221 346777888776411 1 011111223333333233222233344444
Q ss_pred ccCceEEEEEeecccHHHHHHHHHhcCCcEEEeeCCCChHHHHHHHHHhhCCCceEEEE-------EecCCccEEEe---
Q psy437 82 SNKVHVGHWTVVSKECDSVAAALAQERINAISYHAGLADKLRNEVQMKWISNKVHLYNV-------WKIQWKRIIWI--- 151 (184)
Q Consensus 82 ~g~~~vlVaT~tr~~~e~~a~gL~~~gi~~~vih~~~p~~~r~~~~~~f~~~~~~v~va-------~D~~~vr~v~~--- 151 (184)
....++||+++++..|+.++..|...|+++..+|+ +.|..+.+.|++|+..|+|| +|+| +++|||
T Consensus 408 ~~~~~~lVF~~s~~~~e~la~~L~~~g~~v~~lHg----~eR~~v~~~F~~g~~~VLVaTdv~e~GIDip-v~~VI~~g~ 482 (673)
T 2wv9_A 408 DYAGKTVWFVASVKMSNEIAQCLQRAGKRVIQLNR----KSYDTEYPKCKNGDWDFVITTDISEMGANFG-ASRVIDCRK 482 (673)
T ss_dssp SCCSCEEEECSSHHHHHHHHHHHHTTTCCEEEECS----SSHHHHGGGGGTCCCSEEEECGGGGTTCCCC-CSEEEECCE
T ss_pred hCCCCEEEEECCHHHHHHHHHHHHhCCCeEEEeCh----HHHHHHHHHHHCCCceEEEECchhhcceeeC-CcEEEECCC
Confidence 55668999999999999999999999999999999 37888999999999999999 6999 999998
Q ss_pred -----------------cCCCCCccccccccccccCCcc
Q psy437 152 -----------------HSLVLIKPDYLPPILDLRLGRE 173 (184)
Q Consensus 152 -----------------~~~p~~~e~y~~~i~~~~~~r~ 173 (184)
+++|.+.++|+|+++ |+||.
T Consensus 483 ~~~p~vi~da~~r~~ll~d~P~s~~~y~Qr~G--RaGR~ 519 (673)
T 2wv9_A 483 SVKPTILDEGEGRVILSVPSAITSASAAQRRG--RVGRN 519 (673)
T ss_dssp ECCEEEECSTTCEEEECCSEECCHHHHHHHHT--TSSCC
T ss_pred cccceeeecccccceecccCCCCHHHHHHHhh--ccCCC
Confidence 679999999999995 77775
No 111
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=99.08 E-value=3e-10 Score=99.95 Aligned_cols=106 Identities=8% Similarity=-0.076 Sum_probs=90.1
Q ss_pred hHHHHHHHHHhh--cCCCcEEEEeccHHHHHHHHHHHHhCCCeeEEecCCCCHHHHHHHHHHHhccCce---EEEEEeec
Q psy437 20 VLKEVISLIKAK--YSGQSGIVYCLTRKECDSVAAALAQERINAISYHAGLADKLRNEVQMKWISNKVH---VGHWTVVS 94 (184)
Q Consensus 20 k~~~L~~~l~~~--~~~~~~IIf~~tr~~~e~la~~L~~~gi~~~~~hg~l~~~~R~~~~~~f~~g~~~---vlVaT~tr 94 (184)
|+..|..++... ..+.++||||+++..++.+...|...|+++..+||++++++|..++++|.++... +|++|.
T Consensus 400 K~~~l~~ll~~~~~~~~~k~lIFs~~~~~~~~l~~~l~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~L~st~-- 477 (644)
T 1z3i_X 400 KMLVLDYILAMTRTTTSDKVVLVSNYTQTLDLFEKLCRNRRYLYVRLDGTMSIKKRAKIVERFNNPSSPEFIFMLSSK-- 477 (644)
T ss_dssp HHHHHHHHHHHHHHHCCCEEEEEESCHHHHHHHHHHHHHHTCCEEEECSSCCHHHHHHHHHHHHSTTCCCCEEEEEGG--
T ss_pred HHHHHHHHHHHHhhcCCCEEEEEEccHHHHHHHHHHHHHCCCCEEEEeCCCCHHHHHHHHHHhcCCCCCcEEEEEecc--
Confidence 555555544321 1567999999999999999999999999999999999999999999999998764 788888
Q ss_pred ccHHHHHHHHHhcCCcEEEeeCCCChHHHHHHHHHhhC
Q psy437 95 KECDSVAAALAQERINAISYHAGLADKLRNEVQMKWIS 132 (184)
Q Consensus 95 ~~~e~~a~gL~~~gi~~~vih~~~p~~~r~~~~~~f~~ 132 (184)
..+.||+..+.+ .|||+++|-+...+.|+..|.
T Consensus 478 ----a~g~Glnl~~a~-~Vi~~d~~wnp~~~~Qa~gR~ 510 (644)
T 1z3i_X 478 ----AGGCGLNLIGAN-RLVMFDPDWNPANDEQAMARV 510 (644)
T ss_dssp ----GSCTTCCCTTEE-EEEECSCCSSHHHHHHHHTTS
T ss_pred ----cccCCcccccCC-EEEEECCCCCccHHHHHHHhh
Confidence 446799999998 999999999999999998543
No 112
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=99.08 E-value=1.2e-10 Score=111.66 Aligned_cols=104 Identities=19% Similarity=0.133 Sum_probs=85.6
Q ss_pred HHHHHHhhcCCCcEEEEeccHHHHHHHHHHHHhC----------------------------------CCeeEEecCCCC
Q psy437 24 VISLIKAKYSGQSGIVYCLTRKECDSVAAALAQE----------------------------------RINAISYHAGLA 69 (184)
Q Consensus 24 L~~~l~~~~~~~~~IIf~~tr~~~e~la~~L~~~----------------------------------gi~~~~~hg~l~ 69 (184)
+...+.+.....++||||+||+.|+.+|..|... ...++++||||+
T Consensus 1145 ~~~~i~~~~~~~~~lVF~~sR~~~~~~A~~L~~~~~~~~~~~~~~~~~~~~l~~~l~~~~d~~L~~~l~~GIa~hHagL~ 1224 (1724)
T 4f92_B 1145 VYHAITKHSPKKPVIVFVPSRKQTRLTAIDILTTCAADIQRQRFLHCTEKDLIPYLEKLSDSTLKETLLNGVGYLHEGLS 1224 (1724)
T ss_dssp HHHHHHHHCSSSCEEEEESSHHHHHHHHHHHHHHHHHTTCTTTTBCSCHHHHHHHHTTCCCHHHHHHHHTTEEEECTTSC
T ss_pred HHHHHHHhcCCCCeeeeCCCHHHHHHHHHHHHHHHhhccchhhhhcccHHHHHHHHhhcccHHHHHHHhCCEEEECCCCC
Confidence 3444545456789999999999999998777421 124788999999
Q ss_pred HHHHHHHHHHHhccCceEEEEEeecccHHHHHHHHHhcCCcEEEe----------eCCCChHHHHHHHHHhhCCC
Q psy437 70 DKLRNEVQMKWISNKVHVGHWTVVSKECDSVAAALAQERINAISY----------HAGLADKLRNEVQMKWISNK 134 (184)
Q Consensus 70 ~~~R~~~~~~f~~g~~~vlVaT~tr~~~e~~a~gL~~~gi~~~vi----------h~~~p~~~r~~~~~~f~~~~ 134 (184)
+++|..+.+.|++|.++|||||+ .+|.|++.+... +|| |+..|-+..+|+|+.+|.|.
T Consensus 1225 ~~~R~~VE~lF~~G~i~VLvaT~------tlA~GVnlPa~~-VVI~~~~~~dg~~~~~~~~s~~~~~Qm~GRAGR 1292 (1724)
T 4f92_B 1225 PMERRLVEQLFSSGAIQVVVASR------SLCWGMNVAAHL-VIIMDTQYYNGKIHAYVDYPIYDVLQMVGHANR 1292 (1724)
T ss_dssp HHHHHHHHHHHHHTSBCEEEEEG------GGSSSCCCCBSE-EEEECSEEEETTTTEEEECCHHHHHHHHTTBCC
T ss_pred HHHHHHHHHHHHCCCCeEEEECh------HHHcCCCCCccE-EEEecCccccCcccccCCCCHHHHHHhhccccC
Confidence 99999999999999999999999 678999999988 666 55567889999999987764
No 113
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=99.07 E-value=1.5e-09 Score=99.80 Aligned_cols=98 Identities=13% Similarity=0.208 Sum_probs=83.6
Q ss_pred HHHHHhc-cCceEEEEEeecccHHHHHHHHHhcCCc---------------------------------------EEEee
Q psy437 76 VQMKWIS-NKVHVGHWTVVSKECDSVAAALAQERIN---------------------------------------AISYH 115 (184)
Q Consensus 76 ~~~~f~~-g~~~vlVaT~tr~~~e~~a~gL~~~gi~---------------------------------------~~vih 115 (184)
+++.+.. +..++||+++++..|+.++..|...++. +.++|
T Consensus 334 l~~~l~~~~~~~~IVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gI~~~H 413 (1010)
T 2xgj_A 334 IVKMIWKKKYNPVIVFSFSKRDCEELALKMSKLDFNSDDEKEALTKIFNNAIALLPETDRELPQIKHILPLLRRGIGIHH 413 (1010)
T ss_dssp HHHHHHHHTCCSEEEEESSHHHHHHHHHTTTTSCCCCHHHHHHHHHHHHHHHTTSCGGGTTCHHHHHHHHHHHHTEEEES
T ss_pred HHHHHHhcCCCCEEEEECCHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHhcchhhhcchhHHHHHHHHhCCeeEEC
Confidence 4444443 3448999999999999999999764432 57899
Q ss_pred CCCChHHHHHHHHHhhCCCceEEEE-------EecCCccEEEe----cCC----CCCccccccccccccCCcccc
Q psy437 116 AGLADKLRNEVQMKWISNKVHLYNV-------WKIQWKRIIWI----HSL----VLIKPDYLPPILDLRLGREDI 175 (184)
Q Consensus 116 ~~~p~~~r~~~~~~f~~~~~~v~va-------~D~~~vr~v~~----~~~----p~~~e~y~~~i~~~~~~r~~~ 175 (184)
+++++..|..+.+.|++|.+.|+|| +|+|+++.||+ |+. |.+..+|+|++ +|+||.+.
T Consensus 414 ggl~~~eR~~ve~~F~~G~ikVLVAT~~la~GIDiP~~~vVI~~~~kfd~~~~rp~s~~~y~Qr~--GRAGR~G~ 486 (1010)
T 2xgj_A 414 SGLLPILKEVIEILFQEGFLKVLFATETFSIGLNMPAKTVVFTSVRKWDGQQFRWVSGGEYIQMS--GRAGRRGL 486 (1010)
T ss_dssp TTSCHHHHHHHHHHHHTTCCSEEEEEGGGGGSTTCCBSEEEESCSEEECSSCEEECCHHHHHHHH--TTBCCTTT
T ss_pred CCCCHHHHHHHHHHHhcCCCcEEEEehHhhccCCCCCceEEEeCCcccCCcCCccCCHHHHhHhh--hhcccCCC
Confidence 9999999999999999999999999 59999999999 999 89999999999 57777654
No 114
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A*
Probab=99.05 E-value=4.2e-10 Score=99.37 Aligned_cols=88 Identities=13% Similarity=-0.132 Sum_probs=75.0
Q ss_pred CceEEEEEeecccHHHHHHHHHhcCCcEEEeeCCCChHHHHHHHHHhhCCCceEEEE-------EecC--------CccE
Q psy437 84 KVHVGHWTVVSKECDSVAAALAQERINAISYHAGLADKLRNEVQMKWISNKVHLYNV-------WKIQ--------WKRI 148 (184)
Q Consensus 84 ~~~vlVaT~tr~~~e~~a~gL~~~gi~~~vih~~~p~~~r~~~~~~f~~~~~~v~va-------~D~~--------~vr~ 148 (184)
.-++||+|.++..+|.++..|...|+++.++|++..+..+..+.+.|+.| .|+|| .|++ +..+
T Consensus 474 gqpVLVFt~S~e~sE~Ls~~L~~~Gi~~~vLhgkq~~rE~~ii~~ag~~g--~VtVATdmAgRGtDI~lg~~V~~~Gglh 551 (822)
T 3jux_A 474 GQPVLVGTTSIEKSELLSSMLKKKGIPHQVLNAKYHEKEAEIVAKAGQKG--MVTIATNMAGRGTDIKLGPGVAELGGLC 551 (822)
T ss_dssp TCCEEEEESSHHHHHHHHHHHHTTTCCCEEECSCHHHHHHHHHHHHHSTT--CEEEEETTTTTTCCCCCCTTTTTTTSCE
T ss_pred CCCEEEEECCHHHHHHHHHHHHHCCCCEEEeeCCchHHHHHHHHhCCCCC--eEEEEcchhhCCcCccCCcchhhcCCCE
Confidence 45799999999999999999999999999999997777777777777766 57888 5997 5569
Q ss_pred EEecCCCCCcccccccccc-ccCCcc
Q psy437 149 IWIHSLVLIKPDYLPPILD-LRLGRE 173 (184)
Q Consensus 149 v~~~~~p~~~e~y~~~i~~-~~~~r~ 173 (184)
||++++|.+.+.|+|++++ +|.|..
T Consensus 552 VInte~Pes~r~y~qriGRTGRqG~~ 577 (822)
T 3jux_A 552 IIGTERHESRRIDNQLRGRAGRQGDP 577 (822)
T ss_dssp EEESSCCSSHHHHHHHHTTSSCSSCC
T ss_pred EEecCCCCCHHHHHHhhCccccCCCC
Confidence 9999999999999999975 355554
No 115
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=99.05 E-value=3.3e-10 Score=104.12 Aligned_cols=102 Identities=14% Similarity=0.167 Sum_probs=85.6
Q ss_pred HHHHHHHHHHhcc-CceEEEEEeecccHHHHHHHHHhcCC---------------------------------------c
Q psy437 71 KLRNEVQMKWISN-KVHVGHWTVVSKECDSVAAALAQERI---------------------------------------N 110 (184)
Q Consensus 71 ~~R~~~~~~f~~g-~~~vlVaT~tr~~~e~~a~gL~~~gi---------------------------------------~ 110 (184)
.....+++.+... ..++||++.+++.|+.++..|...|+ .
T Consensus 322 ~~~~~li~~l~~~~~~~~IVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~g 401 (997)
T 4a4z_A 322 KTWPEIVNYLRKRELLPMVVFVFSKKRCEEYADWLEGINFCNNKEKSQIHMFIEKSITRLKKEDRDLPQILKTRSLLERG 401 (997)
T ss_dssp THHHHHHHHHHHTTCCSEEEECSCHHHHHHHHHTTTTCCCCCHHHHHHHHHHHHHHHTTSCHHHHTCHHHHHHHHHHTTT
T ss_pred hHHHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhcchhhhcchhHHHHHHHhhcC
Confidence 3344555555543 46899999999999999999976655 3
Q ss_pred EEEeeCCCChHHHHHHHHHhhCCCceEEEE-------EecCCccEEEecCCCC---------CccccccccccccCCccc
Q psy437 111 AISYHAGLADKLRNEVQMKWISNKVHLYNV-------WKIQWKRIIWIHSLVL---------IKPDYLPPILDLRLGRED 174 (184)
Q Consensus 111 ~~vih~~~p~~~r~~~~~~f~~~~~~v~va-------~D~~~vr~v~~~~~p~---------~~e~y~~~i~~~~~~r~~ 174 (184)
+.++|+++++..|..+++.|..|.+.|+|| +|+|+ +.|+++++|+ +..+|+|++ +|+||.+
T Consensus 402 i~~~H~gl~~~~R~~v~~~F~~G~~kVLvAT~~~a~GIDiP~-~~VVi~~~~k~dg~~~~~~s~~~y~Qr~--GRAGR~G 478 (997)
T 4a4z_A 402 IAVHHGGLLPIVKELIEILFSKGFIKVLFATETFAMGLNLPT-RTVIFSSIRKHDGNGLRELTPGEFTQMA--GRAGRRG 478 (997)
T ss_dssp EEEECTTSCHHHHHHHHHHHHTTCCSEEEECTHHHHSCCCCC-SEEEESCSEEEETTEEEECCHHHHHHHH--GGGCCTT
T ss_pred eeeecCCCCHHHHHHHHHHHHCCCCcEEEEchHhhCCCCCCC-ceEEEeccccccCccCCCCCHHHHhHHh--cccccCC
Confidence 589999999999999999999999999999 69999 8888888887 999999999 5888865
Q ss_pred c
Q psy437 175 I 175 (184)
Q Consensus 175 ~ 175 (184)
+
T Consensus 479 ~ 479 (997)
T 4a4z_A 479 L 479 (997)
T ss_dssp T
T ss_pred C
Confidence 3
No 116
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=99.04 E-value=6.8e-10 Score=102.59 Aligned_cols=64 Identities=8% Similarity=-0.008 Sum_probs=56.8
Q ss_pred eEEEEEeecccHHHHHHHHHhcCCcEEEeeCCCChHHHHHHHHHhhCCCceEEEE-----------EecCCc-cEEEecC
Q psy437 86 HVGHWTVVSKECDSVAAALAQERINAISYHAGLADKLRNEVQMKWISNKVHLYNV-----------WKIQWK-RIIWIHS 153 (184)
Q Consensus 86 ~vlVaT~tr~~~e~~a~gL~~~gi~~~vih~~~p~~~r~~~~~~f~~~~~~v~va-----------~D~~~v-r~v~~~~ 153 (184)
++||+|+++..|+.++..|... +++..+|+++. .+.+.|++|++.|+|| +|+|+| ++|||++
T Consensus 277 ~~LVF~~t~~~a~~l~~~L~~~-~~v~~lhg~~~-----~~l~~F~~G~~~VLVaTas~Tdv~~rGIDip~VI~~VI~~~ 350 (1054)
T 1gku_B 277 GGIIYARTGEEAEEIYESLKNK-FRIGIVTATKK-----GDYEKFVEGEIDHLIGTAHYYGTLVRGLDLPERIRFAVFVG 350 (1054)
T ss_dssp CEEEEESSHHHHHHHHHTTTTS-SCEEECTTSSS-----HHHHHHHHTSCSEEEEECC------CCSCCTTTCCEEEEES
T ss_pred CEEEEEcCHHHHHHHHHHHhhc-cCeeEEeccHH-----HHHHHHHcCCCcEEEEecCCCCeeEeccccCCcccEEEEeC
Confidence 4588888889999999999887 99999999984 6677899999999998 499995 9999999
Q ss_pred CC
Q psy437 154 LV 155 (184)
Q Consensus 154 ~p 155 (184)
+|
T Consensus 351 ~P 352 (1054)
T 1gku_B 351 CP 352 (1054)
T ss_dssp CC
T ss_pred CC
Confidence 99
No 117
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=99.02 E-value=3.7e-10 Score=103.57 Aligned_cols=103 Identities=17% Similarity=0.176 Sum_probs=89.3
Q ss_pred HHHHHHHHHHhc--cCceEEEEEeecccHHHHHHHHH-hcCCcEEEeeCCCChHHHHHHHHHhhCCC--ceEEEE-----
Q psy437 71 KLRNEVQMKWIS--NKVHVGHWTVVSKECDSVAAALA-QERINAISYHAGLADKLRNEVQMKWISNK--VHLYNV----- 140 (184)
Q Consensus 71 ~~R~~~~~~f~~--g~~~vlVaT~tr~~~e~~a~gL~-~~gi~~~vih~~~p~~~r~~~~~~f~~~~--~~v~va----- 140 (184)
..|...+..+.. ...++||+|.++..++.++..|. ..|+++.++|+++++..|..+.+.|++|+ +.|+|+
T Consensus 488 ~~K~~~L~~ll~~~~~~k~iVF~~~~~~~~~l~~~L~~~~g~~~~~lhG~~~~~~R~~~l~~F~~g~~~~~vLvaT~v~~ 567 (968)
T 3dmq_A 488 DPRVEWLMGYLTSHRSQKVLVICAKAATALQLEQVLREREGIRAAVFHEGMSIIERDRAAAWFAEEDTGAQVLLCSEIGS 567 (968)
T ss_dssp SHHHHHHHHHHHHTSSSCCCEECSSTHHHHHHHHHHHTTTCCCEEEECTTSCTTHHHHHHHHHHSTTSSCEEEECSCCTT
T ss_pred cHHHHHHHHHHHhCCCCCEEEEeCcHHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhCCCCcccEEEecchhh
Confidence 356666665553 35689999999999999999998 46999999999999999999999999998 999999
Q ss_pred --EecCCccEEEecCCCCCccccccccccc-cCCcc
Q psy437 141 --WKIQWKRIIWIHSLVLIKPDYLPPILDL-RLGRE 173 (184)
Q Consensus 141 --~D~~~vr~v~~~~~p~~~e~y~~~i~~~-~~~r~ 173 (184)
+|+|++.+|+++++|.++..|+|++++. |.|+.
T Consensus 568 ~GlDl~~~~~VI~~d~p~~~~~~~Q~~GR~~R~Gq~ 603 (968)
T 3dmq_A 568 EGRNFQFASHMVMFDLPFNPDLLEQRIGRLDRIGQA 603 (968)
T ss_dssp CSSCCTTCCEEECSSCCSSHHHHHHHHHTTSCSSSC
T ss_pred cCCCcccCcEEEEecCCCCHHHHHHHhhccccCCCC
Confidence 6999999999999999999999999753 55544
No 118
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=99.00 E-value=7.3e-10 Score=94.40 Aligned_cols=88 Identities=11% Similarity=-0.019 Sum_probs=78.5
Q ss_pred cCceEEEEEeecccHHHHHHHHHhcCCcEEEeeCCCChHHHHHHHHHhhCCCceEEEE--------EecCCccEEEecCC
Q psy437 83 NKVHVGHWTVVSKECDSVAAALAQERINAISYHAGLADKLRNEVQMKWISNKVHLYNV--------WKIQWKRIIWIHSL 154 (184)
Q Consensus 83 g~~~vlVaT~tr~~~e~~a~gL~~~gi~~~vih~~~p~~~r~~~~~~f~~~~~~v~va--------~D~~~vr~v~~~~~ 154 (184)
+...+||++. ...++.++..|...+.++..+|+++++..|..+.+.|.+|+..|+|+ +|+|+++.|++++.
T Consensus 347 ~~~~~ivf~~-~~~~~~l~~~L~~~~~~v~~~~g~~~~~~r~~i~~~f~~g~~~vLv~T~~~~~~GiDip~v~~vi~~~~ 425 (510)
T 2oca_A 347 DENAFVMFKH-VSHGKAIFDLIKNEYDKVYYVSGEVDTETRNIMKTLAENGKGIIIVASYGVFSTGISVKNLHHVVLAHG 425 (510)
T ss_dssp TCEEEEEESS-HHHHHHHHHHHHTTCSSEEEESSSTTHHHHHHHHHHHHHCCSCEEEEEHHHHHHSCCCCSEEEEEESSC
T ss_pred CCCeEEEEec-HHHHHHHHHHHHHcCCCeEEEECCCCHHHHHHHHHHHhCCCCCEEEEEcChhhcccccccCcEEEEeCC
Confidence 4556677777 78888999999998889999999999999999999999999999998 59999999999999
Q ss_pred CCCccccccccccccCCcc
Q psy437 155 VLIKPDYLPPILDLRLGRE 173 (184)
Q Consensus 155 p~~~e~y~~~i~~~~~~r~ 173 (184)
|.+...|+|+++ |+||.
T Consensus 426 ~~s~~~~~Q~~G--R~gR~ 442 (510)
T 2oca_A 426 VKSKIIVLQTIG--RVLRK 442 (510)
T ss_dssp CCSCCHHHHHHH--HHHTT
T ss_pred CCCHHHHHHHHh--ccccc
Confidence 999999999996 55554
No 119
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=98.99 E-value=4.3e-10 Score=95.03 Aligned_cols=84 Identities=10% Similarity=-0.027 Sum_probs=75.5
Q ss_pred CceEEEEEeecccHHHHHHHHHhcCCcEEEeeCCCChHHHHHHHHHhhCCCceEEEE-------EecCCccEEEecC---
Q psy437 84 KVHVGHWTVVSKECDSVAAALAQERINAISYHAGLADKLRNEVQMKWISNKVHLYNV-------WKIQWKRIIWIHS--- 153 (184)
Q Consensus 84 ~~~vlVaT~tr~~~e~~a~gL~~~gi~~~vih~~~p~~~r~~~~~~f~~~~~~v~va-------~D~~~vr~v~~~~--- 153 (184)
..++||++++++.|+.++..|...|+.+..+|++++ ..+.+.|++|+..|+|| +|+|+ ++|||++
T Consensus 188 ~~~~lVF~~s~~~a~~l~~~L~~~g~~~~~lh~~~~----~~~~~~f~~g~~~vLVaT~v~~~GiDip~-~~VI~~~~~~ 262 (451)
T 2jlq_A 188 QGKTVWFVPSIKAGNDIANCLRKSGKRVIQLSRKTF----DTEYPKTKLTDWDFVVTTDISEMGANFRA-GRVIDPRRCL 262 (451)
T ss_dssp CSCEEEECSSHHHHHHHHHHHHTTTCCEEEECTTTH----HHHGGGGGSSCCSEEEECGGGGSSCCCCC-SEEEECCEEE
T ss_pred CCCEEEEcCCHHHHHHHHHHHHHcCCeEEECCHHHH----HHHHHhhccCCceEEEECCHHHhCcCCCC-CEEEECCCcc
Confidence 448999999999999999999999999999999765 46778899999999999 69999 9999999
Q ss_pred -----------------CCCCccccccccccccCCccc
Q psy437 154 -----------------LVLIKPDYLPPILDLRLGRED 174 (184)
Q Consensus 154 -----------------~p~~~e~y~~~i~~~~~~r~~ 174 (184)
.|.+.++|+|+++ |+||.+
T Consensus 263 ~~~~d~~~~~~l~~~~~~p~s~~~y~Qr~G--RaGR~g 298 (451)
T 2jlq_A 263 KPVILTDGPERVILAGPIPVTPASAAQRRG--RIGRNP 298 (451)
T ss_dssp EEEEECSSSCEEEEEEEEECCHHHHHHHHT--TSSCCT
T ss_pred cccccccccceeeecccccCCHHHHHHhcc--ccCCCC
Confidence 9999999999995 666654
No 120
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=98.98 E-value=5.5e-10 Score=99.29 Aligned_cols=140 Identities=16% Similarity=0.072 Sum_probs=103.6
Q ss_pred CCcEEEEeccHHHHHHHHHHHHhC-------CCeeE--EecC------C-CC--HHHHHHHHHHHhccCceEEEEEeecc
Q psy437 34 GQSGIVYCLTRKECDSVAAALAQE-------RINAI--SYHA------G-LA--DKLRNEVQMKWISNKVHVGHWTVVSK 95 (184)
Q Consensus 34 ~~~~IIf~~tr~~~e~la~~L~~~-------gi~~~--~~hg------~-l~--~~~R~~~~~~f~~g~~~vlVaT~tr~ 95 (184)
..+.|.++.|-..++.++++|... .++.. .+.. . .. .......+........++||++++++
T Consensus 169 ~~~ii~lSATl~n~~~~~~~l~~~~~~~~~rp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LVF~~sr~ 248 (720)
T 2zj8_A 169 KAQIIGLSATIGNPEELAEWLNAELIVSDWRPVKLRRGVFYQGFVTWEDGSIDRFSSWEELVYDAIRKKKGALIFVNMRR 248 (720)
T ss_dssp TBEEEEEECCCSCHHHHHHHTTEEEEECCCCSSEEEEEEEETTEEEETTSCEEECSSTTHHHHHHHHTTCCEEEECSCHH
T ss_pred CCeEEEEcCCcCCHHHHHHHhCCcccCCCCCCCcceEEEEeCCeeeccccchhhhhHHHHHHHHHHhCCCCEEEEecCHH
Confidence 456777888877788999988531 11111 1111 0 00 11223333443444578999999999
Q ss_pred cHHHHHHHHHhc------------------CC---------------cEEEeeCCCChHHHHHHHHHhhCCCceEEEE--
Q psy437 96 ECDSVAAALAQE------------------RI---------------NAISYHAGLADKLRNEVQMKWISNKVHLYNV-- 140 (184)
Q Consensus 96 ~~e~~a~gL~~~------------------gi---------------~~~vih~~~p~~~r~~~~~~f~~~~~~v~va-- 140 (184)
+|+.+|..|... ++ .+..+|+++|++.|..+.+.|++|.+.|+||
T Consensus 249 ~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~~f~~g~~~vlvaT~ 328 (720)
T 2zj8_A 249 KAERVALELSKKVKSLLTKPEIRALNELADSLEENPTNEKLAKAIRGGVAFHHAGLGRDERVLVEENFRKGIIKAVVATP 328 (720)
T ss_dssp HHHHHHHHHHHHHGGGSCHHHHHHHHHHHHTSCSCHHHHHHHHHHTTTEEEECTTSCHHHHHHHHHHHHTTSSCEEEECS
T ss_pred HHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHhcccchHHHHHHHhcCeeeecCCCCHHHHHHHHHHHHCCCCeEEEECc
Confidence 999999998642 22 3689999999999999999999999999999
Q ss_pred -----EecCCccEEEe----cC----CCCCccccccccccccCCcccc
Q psy437 141 -----WKIQWKRIIWI----HS----LVLIKPDYLPPILDLRLGREDI 175 (184)
Q Consensus 141 -----~D~~~vr~v~~----~~----~p~~~e~y~~~i~~~~~~r~~~ 175 (184)
+|+|+++.||+ |+ .|.+..+|+|++ +|+||.+.
T Consensus 329 ~l~~Gvdip~~~~VI~~~~~yd~~g~~~~s~~~~~Qr~--GRaGR~g~ 374 (720)
T 2zj8_A 329 TLSAGINTPAFRVIIRDIWRYSDFGMERIPIIEVHQML--GRAGRPKY 374 (720)
T ss_dssp TTGGGCCCCBSEEEECCSEECCSSSCEECCHHHHHHHH--TTBCCTTT
T ss_pred HhhccCCCCceEEEEcCCeeecCCCCccCCHHHHHHHH--hhcCCCCC
Confidence 69999999999 76 689999999999 58888653
No 121
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=98.93 E-value=1.8e-09 Score=96.56 Aligned_cols=103 Identities=12% Similarity=-0.096 Sum_probs=84.2
Q ss_pred CHHHHHHHHHHHh----ccCceEEEEEeecccHHHHHHHHHhcCCcEEEeeCCCChHHHHHHHHHhhCCCceEEEE----
Q psy437 69 ADKLRNEVQMKWI----SNKVHVGHWTVVSKECDSVAAALAQERINAISYHAGLADKLRNEVQMKWISNKVHLYNV---- 140 (184)
Q Consensus 69 ~~~~R~~~~~~f~----~g~~~vlVaT~tr~~~e~~a~gL~~~gi~~~vih~~~p~~~r~~~~~~f~~~~~~v~va---- 140 (184)
+..++...+-... ...-++||+|.+...+|.++..|...|+++.++|++..+..+..+.+.|+.| .|+||
T Consensus 422 ~~~~K~~al~~~i~~~~~~gqpvLVft~sie~se~Ls~~L~~~gi~~~vLnak~~~rEa~iia~agr~G--~VtIATnmA 499 (853)
T 2fsf_A 422 TEAEKIQAIIEDIKERTAKGQPVLVGTISIEKSELVSNELTKAGIKHNVLNAKFHANEAAIVAQAGYPA--AVTIATNMA 499 (853)
T ss_dssp SHHHHHHHHHHHHHHHHTTTCCEEEEESSHHHHHHHHHHHHHTTCCCEECCTTCHHHHHHHHHTTTSTT--CEEEEESCC
T ss_pred CHHHHHHHHHHHHHHHhcCCCCEEEEECcHHHHHHHHHHHHHCCCCEEEecCChhHHHHHHHHhcCCCC--eEEEecccc
Confidence 4455554444332 2234799999999999999999999999999999999988888888889888 57777
Q ss_pred ---EecCC--------------------------------c-----cEEEecCCCCCcccccccccc-ccCCcc
Q psy437 141 ---WKIQW--------------------------------K-----RIIWIHSLVLIKPDYLPPILD-LRLGRE 173 (184)
Q Consensus 141 ---~D~~~--------------------------------v-----r~v~~~~~p~~~e~y~~~i~~-~~~~r~ 173 (184)
.|++. | .+||++++|.+.+.|.|++++ +|.|+.
T Consensus 500 gRGtDI~l~gn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGl~VI~te~pes~riy~qr~GRTGRqGd~ 573 (853)
T 2fsf_A 500 GRGTDIVLGGSWQAEVAALENPTAEQIEKIKADWQVRHDAVLEAGGLHIIGTERHESRRIDNQLRGRSGRQGDA 573 (853)
T ss_dssp SSCSCCCTTCCHHHHHHHCSSCCSSHHHHHHHHHHHHHHHHHHTTSEEEEESSCCSSHHHHHHHHTTSSGGGCC
T ss_pred cCCcCccCCCchHhhhhhcccchhHHHHHHHHHhhhhhhHHHhcCCcEEEEccCCCCHHHHHhhccccccCCCC
Confidence 59987 4 699999999999999999976 366655
No 122
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=98.93 E-value=2.5e-09 Score=96.28 Aligned_cols=107 Identities=9% Similarity=-0.023 Sum_probs=93.4
Q ss_pred ChHHHHHHHHHhhc-CCCcEEEEeccHHHHHHHHHHHHhCCCeeEEecCCCCHHHHHHHHHHHhccCce---EEEEEeec
Q psy437 19 NVLKEVISLIKAKY-SGQSGIVYCLTRKECDSVAAALAQERINAISYHAGLADKLRNEVQMKWISNKVH---VGHWTVVS 94 (184)
Q Consensus 19 ~k~~~L~~~l~~~~-~~~~~IIf~~tr~~~e~la~~L~~~gi~~~~~hg~l~~~~R~~~~~~f~~g~~~---vlVaT~tr 94 (184)
.|+..|.++|.... .+.++||||.....++.+...|...|+++..+||+++..+|..++++|.++... +|++|.
T Consensus 556 ~K~~~L~~lL~~~~~~g~kvLIFsq~~~~ld~L~~~L~~~g~~~~~i~G~~~~~eR~~~i~~F~~~~~~~~v~LlSt~-- 633 (800)
T 3mwy_W 556 GKMVLLDQLLTRLKKDGHRVLIFSQMVRMLDILGDYLSIKGINFQRLDGTVPSAQRRISIDHFNSPDSNDFVFLLSTR-- 633 (800)
T ss_dssp HHHHHHHHHHHHHTTTTCCEEEEESCHHHHHHHHHHHHHHTCCCEEESTTSCHHHHHHHHHTTSSTTCSCCCEEEEHH--
T ss_pred hHHHHHHHHHHHHhhCCCeEEEEechHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHhhCCCCCceEEEEecc--
Confidence 47777777776532 456899999999999999999999999999999999999999999999986654 788888
Q ss_pred ccHHHHHHHHHhcCCcEEEeeCCCChHHHHHHHHHhhC
Q psy437 95 KECDSVAAALAQERINAISYHAGLADKLRNEVQMKWIS 132 (184)
Q Consensus 95 ~~~e~~a~gL~~~gi~~~vih~~~p~~~r~~~~~~f~~ 132 (184)
....||+.+..+ .|||++.|-+...+.|+..|.
T Consensus 634 ----agg~GlNL~~a~-~VI~~D~~wnp~~~~Qa~gR~ 666 (800)
T 3mwy_W 634 ----AGGLGINLMTAD-TVVIFDSDWNPQADLQAMARA 666 (800)
T ss_dssp ----HHTTTCCCTTCC-EEEESSCCSCSHHHHHHHTTT
T ss_pred ----cccCCCCccccc-eEEEecCCCChhhHHHHHHHH
Confidence 667899999998 999999999999999998553
No 123
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=98.84 E-value=6.2e-10 Score=94.25 Aligned_cols=84 Identities=10% Similarity=-0.020 Sum_probs=75.0
Q ss_pred CceEEEEEeecccHHHHHHHHHhcCCcEEEeeCCCChHHHHHHHHHhhCCCceEEEE-------EecCCccEEEe-----
Q psy437 84 KVHVGHWTVVSKECDSVAAALAQERINAISYHAGLADKLRNEVQMKWISNKVHLYNV-------WKIQWKRIIWI----- 151 (184)
Q Consensus 84 ~~~vlVaT~tr~~~e~~a~gL~~~gi~~~vih~~~p~~~r~~~~~~f~~~~~~v~va-------~D~~~vr~v~~----- 151 (184)
..++||++++++.|+.++..|...|+.+..+|++ .|..+.+.|++|+..|+|+ +|+|+ ++||+
T Consensus 190 ~~~~LVF~~s~~~~~~l~~~L~~~g~~v~~lh~~----~R~~~~~~f~~g~~~iLVaT~v~~~GiDip~-~~VI~~G~~~ 264 (459)
T 2z83_A 190 AGKTVWFVASVKMGNEIAMCLQRAGKKVIQLNRK----SYDTEYPKCKNGDWDFVITTDISEMGANFGA-SRVIDCRKSV 264 (459)
T ss_dssp CSCEEEECSCHHHHHHHHHHHHHTTCCEEEESTT----CCCCCGGGSSSCCCSEEEESSCC---CCCSC-SEEEECCEEC
T ss_pred CCCEEEEeCChHHHHHHHHHHHhcCCcEEecCHH----HHHHHHhhccCCCceEEEECChHHhCeecCC-CEEEECCccc
Confidence 4579999999999999999999999999999985 5667778899999999999 59999 99999
Q ss_pred ---------------cCCCCCccccccccccccCCccc
Q psy437 152 ---------------HSLVLIKPDYLPPILDLRLGRED 174 (184)
Q Consensus 152 ---------------~~~p~~~e~y~~~i~~~~~~r~~ 174 (184)
++.|.+..+|+|+++ |+||.+
T Consensus 265 ~~~~~~~~~~~~~~~~d~p~s~~~~~QR~G--RaGR~g 300 (459)
T 2z83_A 265 KPTILEEGEGRVILGNPSPITSASAAQRRG--RVGRNP 300 (459)
T ss_dssp CEEEECSSSCEEEECSCEECCHHHHHHHHT--TSSCCT
T ss_pred ccccccccccccccccCCCCCHHHHHHhcc--ccCCCC
Confidence 789999999999995 666654
No 124
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=98.83 E-value=6.9e-09 Score=93.21 Aligned_cols=87 Identities=9% Similarity=-0.118 Sum_probs=76.2
Q ss_pred ceEEEEEeecccHHHHHHHHHhcCCcEEEeeCCCChHHHHHHHHHhhCCCceEEEE-------EecCCc-----------
Q psy437 85 VHVGHWTVVSKECDSVAAALAQERINAISYHAGLADKLRNEVQMKWISNKVHLYNV-------WKIQWK----------- 146 (184)
Q Consensus 85 ~~vlVaT~tr~~~e~~a~gL~~~gi~~~vih~~~p~~~r~~~~~~f~~~~~~v~va-------~D~~~v----------- 146 (184)
-++||+|.+...+|.++..|...|+++.++|++..+..+..+.+.|+.| .|+|| .|++.+
T Consensus 461 qpvLVft~Sie~sE~Ls~~L~~~Gi~~~vLnak~~~rEa~iia~agr~G--~VtIATnmAgRGtDI~l~~~~~~~~~~~~ 538 (922)
T 1nkt_A 461 QPVLIGTTSVERSEYLSRQFTKRRIPHNVLNAKYHEQEATIIAVAGRRG--GVTVATNMAGRGTDIVLGGNVDFLTDQRL 538 (922)
T ss_dssp CCEEEEESCHHHHHHHHHHHHHTTCCCEEECSSCHHHHHHHHHTTTSTT--CEEEEETTCSTTCCCCTTCCHHHHHHHHH
T ss_pred CcEEEEECCHHHHHHHHHHHHHCCCCEEEecCChhHHHHHHHHhcCCCC--eEEEecchhhcCccccCCCCHHHHHHHHH
Confidence 4799999999999999999999999999999999888888888888877 56777 599875
Q ss_pred -----------------------------------------cEEEecCCCCCcccccccccc-ccCCcc
Q psy437 147 -----------------------------------------RIIWIHSLVLIKPDYLPPILD-LRLGRE 173 (184)
Q Consensus 147 -----------------------------------------r~v~~~~~p~~~e~y~~~i~~-~~~~r~ 173 (184)
-+||++++|.+.+.|.|++++ +|.|+.
T Consensus 539 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGlhVI~te~pes~riy~qr~GRTGRqGdp 607 (922)
T 1nkt_A 539 RERGLDPVETPEEYEAAWHSELPIVKEEASKEAKEVIEAGGLYVLGTERHESRRIDNQLRGRSGRQGDP 607 (922)
T ss_dssp HHTTCCTTTSHHHHHHHHHHHHHHHHHHTTHHHHHHHHTTSEEEEECSCCSSHHHHHHHHHTSSGGGCC
T ss_pred hhccccccccchhhHHHHHHHHHHHHHHHHHhhhHHHhcCCcEEEeccCCCCHHHHHHHhcccccCCCC
Confidence 599999999999999999975 355554
No 125
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=98.81 E-value=1.1e-08 Score=86.96 Aligned_cols=97 Identities=10% Similarity=0.060 Sum_probs=79.0
Q ss_pred HHHHHhccCceEEEEEeecccHHHHHHHHHhc-CCcEEEeeCCCChHHHHHHHHHhhCC-Cce-EEEE-------EecCC
Q psy437 76 VQMKWISNKVHVGHWTVVSKECDSVAAALAQE-RINAISYHAGLADKLRNEVQMKWISN-KVH-LYNV-------WKIQW 145 (184)
Q Consensus 76 ~~~~f~~g~~~vlVaT~tr~~~e~~a~gL~~~-gi~~~vih~~~p~~~r~~~~~~f~~~-~~~-v~va-------~D~~~ 145 (184)
.+..+.....++||+|.....++.++..|... |+.+..+|+++|+..|..+.+.|+++ .+. ++++ +|.+.
T Consensus 333 ~l~~~~~~~~k~lvF~~~~~~~~~l~~~l~~~~~~~~~~~~g~~~~~~R~~~~~~F~~~~~~~vil~st~~~~~Glnl~~ 412 (500)
T 1z63_A 333 IIEEALDEGDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLSVKAGGFGINLTS 412 (500)
T ss_dssp HHHHHHTTTCCEEEECSCHHHHHHHHHHHHHHHTCCCCEEETTSCHHHHHHHHHHHHHCTTCCCCEEECCCC-CCCCCTT
T ss_pred HHHHHHccCCcEEEEEehHHHHHHHHHHHHHhhCCCeEEEECCCCHHHHHHHHHHhcCCCCCCEEEEecccccCCCchhh
Confidence 34444455668999999999999999999875 99989999999999999999999988 555 4544 69999
Q ss_pred ccEEEecCCCCCccccccccccc-cCCc
Q psy437 146 KRIIWIHSLVLIKPDYLPPILDL-RLGR 172 (184)
Q Consensus 146 vr~v~~~~~p~~~e~y~~~i~~~-~~~r 172 (184)
+..|+++++|.++..|.|+++|. |.|.
T Consensus 413 ~~~vi~~d~~~~~~~~~Q~~gR~~R~Gq 440 (500)
T 1z63_A 413 ANRVIHFDRWWNPAVEDQATDRVYRIGQ 440 (500)
T ss_dssp CSEEEESSCCSCC---CHHHHTTTTTTT
T ss_pred CCEEEEeCCCCCcchHHHHHHHHHHcCC
Confidence 99999999999999999999653 4443
No 126
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=98.71 E-value=2.5e-09 Score=90.23 Aligned_cols=84 Identities=11% Similarity=0.022 Sum_probs=76.7
Q ss_pred CceEEEEEeecccHHHHHHHHHhcCCcEEEeeCCCChHHHHHHHHHhhCCCceEEEE-------EecCCccEEEecCCCC
Q psy437 84 KVHVGHWTVVSKECDSVAAALAQERINAISYHAGLADKLRNEVQMKWISNKVHLYNV-------WKIQWKRIIWIHSLVL 156 (184)
Q Consensus 84 ~~~vlVaT~tr~~~e~~a~gL~~~gi~~~vih~~~p~~~r~~~~~~f~~~~~~v~va-------~D~~~vr~v~~~~~p~ 156 (184)
..++||+|++...++.++..|. +.++|+++|...|..+.+.|++|++.|+|+ +|+|++..|++++.|.
T Consensus 349 ~~k~lvF~~~~~~~~~l~~~l~-----~~~~~g~~~~~~R~~~~~~F~~g~~~vLv~T~~~~~Gldlp~~~~Vi~~~~~~ 423 (472)
T 2fwr_A 349 KDKIIIFTRHNELVYRISKVFL-----IPAITHRTSREEREEILEGFRTGRFRAIVSSQVLDEGIDVPDANVGVIMSGSG 423 (472)
T ss_dssp SSCBCCBCSCHHHHHHHHHHTT-----CCBCCSSSCSHHHHTHHHHHHHSSCSBCBCSSCCCSSSCSCCBSEEEEECCSS
T ss_pred CCcEEEEECCHHHHHHHHHHhC-----cceeeCCCCHHHHHHHHHHHhCCCCCEEEEcCchhcCcccccCcEEEEECCCC
Confidence 4589999999999999999884 367999999999999999999999999998 6999999999999999
Q ss_pred CccccccccccccCCccc
Q psy437 157 IKPDYLPPILDLRLGRED 174 (184)
Q Consensus 157 ~~e~y~~~i~~~~~~r~~ 174 (184)
+...|+|+++ |+||.+
T Consensus 424 s~~~~~Q~~G--R~~R~g 439 (472)
T 2fwr_A 424 SAREYIQRLG--RILRPS 439 (472)
T ss_dssp CCHHHHHHHH--HSBCCC
T ss_pred CHHHHHHHHh--hccCCC
Confidence 9999999994 777765
No 127
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=98.70 E-value=5.9e-08 Score=85.38 Aligned_cols=90 Identities=8% Similarity=-0.006 Sum_probs=80.1
Q ss_pred cCceEEEEEeecccHHHHHHHHHhcCCcEEEeeCCCChHHHHHHHHHhhCCCce---EEEE-------EecCCccEEEec
Q psy437 83 NKVHVGHWTVVSKECDSVAAALAQERINAISYHAGLADKLRNEVQMKWISNKVH---LYNV-------WKIQWKRIIWIH 152 (184)
Q Consensus 83 g~~~vlVaT~tr~~~e~~a~gL~~~gi~~~vih~~~p~~~r~~~~~~f~~~~~~---v~va-------~D~~~vr~v~~~ 152 (184)
+.-++||+|.....++.++..|...|+.+..+||++|.+.|..+.+.|.++... ++++ +|.+.+.+||++
T Consensus 415 ~~~k~lIFs~~~~~~~~l~~~l~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~L~st~a~g~Glnl~~a~~Vi~~ 494 (644)
T 1z3i_X 415 TSDKVVLVSNYTQTLDLFEKLCRNRRYLYVRLDGTMSIKKRAKIVERFNNPSSPEFIFMLSSKAGGCGLNLIGANRLVMF 494 (644)
T ss_dssp CCCEEEEEESCHHHHHHHHHHHHHHTCCEEEECSSCCHHHHHHHHHHHHSTTCCCCEEEEEGGGSCTTCCCTTEEEEEEC
T ss_pred CCCEEEEEEccHHHHHHHHHHHHHCCCCEEEEeCCCCHHHHHHHHHHhcCCCCCcEEEEEecccccCCcccccCCEEEEE
Confidence 456899999999999999999999999999999999999999999999998654 5555 699999999999
Q ss_pred CCCCCccccccccccc-cCCc
Q psy437 153 SLVLIKPDYLPPILDL-RLGR 172 (184)
Q Consensus 153 ~~p~~~e~y~~~i~~~-~~~r 172 (184)
|+|.++..|.|++.+. |.|.
T Consensus 495 d~~wnp~~~~Qa~gR~~R~Gq 515 (644)
T 1z3i_X 495 DPDWNPANDEQAMARVWRDGQ 515 (644)
T ss_dssp SCCSSHHHHHHHHTTSSSTTC
T ss_pred CCCCCccHHHHHHHhhhhcCC
Confidence 9999999999999653 5553
No 128
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=98.70 E-value=1.5e-08 Score=87.88 Aligned_cols=86 Identities=8% Similarity=0.018 Sum_probs=73.4
Q ss_pred ceEEEEEeecccHHHHHHHHHhcCCc--------EEEeeCCCChHHHHHHHHHhhCCCce---EEEE-------EecCCc
Q psy437 85 VHVGHWTVVSKECDSVAAALAQERIN--------AISYHAGLADKLRNEVQMKWISNKVH---LYNV-------WKIQWK 146 (184)
Q Consensus 85 ~~vlVaT~tr~~~e~~a~gL~~~gi~--------~~vih~~~p~~~r~~~~~~f~~~~~~---v~va-------~D~~~v 146 (184)
.++||+|+++..|+.++..|...+.. +..+|+++|+ .|..+.+.|++++.. |+++ +|+|++
T Consensus 440 ~k~lVF~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~~i~g~~~~-~r~~~l~~F~~~~~~~~~ilvtt~~l~~GiDip~v 518 (590)
T 3h1t_A 440 AKTIVFCVDQEHADEMRRALNNLNSDLSRKHPDYVARVTSEEGK-IGKGHLSRFQELETSTPVILTTSQLLTTGVDAPTC 518 (590)
T ss_dssp SEEEEEESSHHHHHHHHHHHHHHTHHHHTTCTTSEEECSSTTHH-HHHHHHHHHHCTTCCCCCEEEESSTTTTTCCCTTE
T ss_pred ccEEEEECCHHHHHHHHHHHHHhhhhhhccCCCeEEEEeCCChH-HHHHHHHHHhCCCCCCCEEEEECChhhcCccchhe
Confidence 58999999999999999999765432 5789999875 788999999997755 6666 699999
Q ss_pred cEEEecCCCCCccccccccccccCCcc
Q psy437 147 RIIWIHSLVLIKPDYLPPILDLRLGRE 173 (184)
Q Consensus 147 r~v~~~~~p~~~e~y~~~i~~~~~~r~ 173 (184)
..|+++++|.+...|+|+++ |+||.
T Consensus 519 ~~Vi~~~~~~s~~~~~Q~iG--R~~R~ 543 (590)
T 3h1t_A 519 KNVVLARVVNSMSEFKQIVG--RGTRL 543 (590)
T ss_dssp EEEEEESCCCCHHHHHHHHT--TSCCC
T ss_pred eEEEEEecCCChHHHHHHHh--hhccc
Confidence 99999999999999999995 66663
No 129
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=98.50 E-value=3.3e-07 Score=82.50 Aligned_cols=97 Identities=11% Similarity=0.055 Sum_probs=83.4
Q ss_pred HHHHHhccCceEEEEEeecccHHHHHHHHHhcCCcEEEeeCCCChHHHHHHHHHhhCCCce---EEEE-------EecCC
Q psy437 76 VQMKWISNKVHVGHWTVVSKECDSVAAALAQERINAISYHAGLADKLRNEVQMKWISNKVH---LYNV-------WKIQW 145 (184)
Q Consensus 76 ~~~~f~~g~~~vlVaT~tr~~~e~~a~gL~~~gi~~~vih~~~p~~~r~~~~~~f~~~~~~---v~va-------~D~~~ 145 (184)
++..+....-++||+|.....++.++..|...|+++..+||++|...|..+.+.|.++... ++++ +|.+.
T Consensus 564 lL~~~~~~g~kvLIFsq~~~~ld~L~~~L~~~g~~~~~i~G~~~~~eR~~~i~~F~~~~~~~~v~LlSt~agg~GlNL~~ 643 (800)
T 3mwy_W 564 LLTRLKKDGHRVLIFSQMVRMLDILGDYLSIKGINFQRLDGTVPSAQRRISIDHFNSPDSNDFVFLLSTRAGGLGINLMT 643 (800)
T ss_dssp HHHHHTTTTCCEEEEESCHHHHHHHHHHHHHHTCCCEEESTTSCHHHHHHHHHTTSSTTCSCCCEEEEHHHHTTTCCCTT
T ss_pred HHHHHhhCCCeEEEEechHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHhhCCCCCceEEEEecccccCCCCccc
Confidence 3444555566899999999999999999999999999999999999999999999986543 5555 69999
Q ss_pred ccEEEecCCCCCccccccccccc-cCCc
Q psy437 146 KRIIWIHSLVLIKPDYLPPILDL-RLGR 172 (184)
Q Consensus 146 vr~v~~~~~p~~~e~y~~~i~~~-~~~r 172 (184)
...||++|+|.++..+.|++.|. |.|-
T Consensus 644 a~~VI~~D~~wnp~~~~Qa~gR~~RiGQ 671 (800)
T 3mwy_W 644 ADTVVIFDSDWNPQADLQAMARAHRIGQ 671 (800)
T ss_dssp CCEEEESSCCSCSHHHHHHHTTTSCSSC
T ss_pred cceEEEecCCCChhhHHHHHHHHHhcCC
Confidence 99999999999999999999753 5554
No 130
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=98.48 E-value=2.4e-07 Score=85.39 Aligned_cols=93 Identities=5% Similarity=0.057 Sum_probs=75.5
Q ss_pred CCcEEEEeccHHHHHHHHHHHHhCC------------Cee-EEecCC----------C----------CH----------
Q psy437 34 GQSGIVYCLTRKECDSVAAALAQER------------INA-ISYHAG----------L----------AD---------- 70 (184)
Q Consensus 34 ~~~~IIf~~tr~~~e~la~~L~~~g------------i~~-~~~hg~----------l----------~~---------- 70 (184)
+.++||||+|+..|..+++.|.+.+ +++ .++||+ + ++
T Consensus 537 g~kamVf~~S~~~A~~~~~~l~~~~~~~~~~~~~~~~~k~avv~s~~~~~~~~~~G~~~~e~~~~~~~~~~~r~~l~~~I 616 (1038)
T 2w00_A 537 GFNAMLAVSSVDAAKAYYATFKRLQEEAANKSATYKPLRIATIFSFAANEEQNAIGEISDETFDTSAMDSSAKEFLDAAI 616 (1038)
T ss_dssp CCEEEEEESSHHHHHHHHHHHHHHHHHHTTTSSSCCCCCEEEECCCCC------CCCCCCCCSCGGGSCHHHHHHHHHHH
T ss_pred CCcEEEEECCHHHHHHHHHHHHhhhhhhcccccccccCcEEEEEeCCCccccccccccccccccccccchhHHHHHHHHH
Confidence 3579999999999999999998654 555 456653 2 22
Q ss_pred -------------------HHHHHHHHHHhccCceEEEEEeecccHHHHHHHHHhcCCcEEEeeCCCChHHHHHHHHHhh
Q psy437 71 -------------------KLRNEVQMKWISNKVHVGHWTVVSKECDSVAAALAQERINAISYHAGLADKLRNEVQMKWI 131 (184)
Q Consensus 71 -------------------~~R~~~~~~f~~g~~~vlVaT~tr~~~e~~a~gL~~~gi~~~vih~~~p~~~r~~~~~~f~ 131 (184)
..|..++++|++|+.++||+|+ .+++|+|.|.+. +++.+.|-+...++|+..|
T Consensus 617 ~dyn~~f~~~~~~~~~~~~~~R~~i~~~Fk~g~i~ILIvvd------~lltGfDiP~l~--tlylDkpl~~~~liQaIGR 688 (1038)
T 2w00_A 617 REYNSHFKTNFSTDSNGFQNYYRDLAQRVKNQDIDLLIVVG------MFLTGFDAPTLN--TLFVDKNLRYHGLMQAFSR 688 (1038)
T ss_dssp HHHHHHHTCCCCSSHHHHHHHHHHHHHHHHTTSSSEEEESS------TTSSSCCCTTEE--EEEEESCCCHHHHHHHHHT
T ss_pred HHHHHHhcccccccchhhhHHHHHHHHHHHcCCCeEEEEcc------hHHhCcCccccc--EEEEccCCCccceeehhhc
Confidence 1478899999999999999999 888999999984 5678899999999999977
Q ss_pred CCC
Q psy437 132 SNK 134 (184)
Q Consensus 132 ~~~ 134 (184)
.++
T Consensus 689 tnR 691 (1038)
T 2w00_A 689 TNR 691 (1038)
T ss_dssp TCC
T ss_pred cCc
Confidence 654
No 131
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=98.33 E-value=2e-06 Score=62.49 Aligned_cols=88 Identities=14% Similarity=0.178 Sum_probs=81.6
Q ss_pred CceEEEEEeecccHHHHHHHHHhcCCcEEEeeCCCChHHHHHHHHHhhCCCceEEEE-------EecCCccEEEecCCCC
Q psy437 84 KVHVGHWTVVSKECDSVAAALAQERINAISYHAGLADKLRNEVQMKWISNKVHLYNV-------WKIQWKRIIWIHSLVL 156 (184)
Q Consensus 84 ~~~vlVaT~tr~~~e~~a~gL~~~gi~~~vih~~~p~~~r~~~~~~f~~~~~~v~va-------~D~~~vr~v~~~~~p~ 156 (184)
..++||+++++..++.++..|...|+.+..+|+++|+..|..+.+.|++|+..|+++ +|+|++++|+++++|.
T Consensus 30 ~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~G~d~~~~~~Vi~~~~p~ 109 (165)
T 1fuk_A 30 VTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTDLLARGIDVQQVSLVINYDLPA 109 (165)
T ss_dssp CSCEEEEESSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEEEGGGTTTCCCCSCSEEEESSCCS
T ss_pred CCCEEEEECCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHcCCCEEEEEcChhhcCCCcccCCEEEEeCCCC
Confidence 357999999999999999999999999999999999999999999999999999999 6999999999999999
Q ss_pred CccccccccccccCCcc
Q psy437 157 IKPDYLPPILDLRLGRE 173 (184)
Q Consensus 157 ~~e~y~~~i~~~~~~r~ 173 (184)
+.+.|+|+++ |+||.
T Consensus 110 ~~~~~~qr~G--R~gR~ 124 (165)
T 1fuk_A 110 NKENYIHRIG--RGGRF 124 (165)
T ss_dssp SGGGGGGSSC--SCC--
T ss_pred CHHHHHHHhc--ccccC
Confidence 9999999995 66664
No 132
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=98.11 E-value=4.3e-07 Score=76.38 Aligned_cols=137 Identities=9% Similarity=0.016 Sum_probs=81.2
Q ss_pred CCeEEEEEEccChH--------HHHHHHHHhhcCCCcEEEEeccHHHHHHHHHHHHhCCCeeEEecCCCCHHHHHHHHHH
Q psy437 8 ANLKYEILPKKNVL--------KEVISLIKAKYSGQSGIVYCLTRKECDSVAAALAQERINAISYHAGLADKLRNEVQMK 79 (184)
Q Consensus 8 ~Nl~y~v~~~~~k~--------~~L~~~l~~~~~~~~~IIf~~tr~~~e~la~~L~~~gi~~~~~hg~l~~~~R~~~~~~ 79 (184)
.|+.+.|..+...+ ..+...+.. ...+.|.++.|.... + ..+.....+........+.......+..
T Consensus 98 ~~l~~vViDEah~~~~~~~~~~~~~~~~~~~--~~~~~l~~SAT~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (440)
T 1yks_A 98 VNWEVIIMDEAHFLDPASIAARGWAAHRARA--NESATILMTATPPGT--S-DEFPHSNGEIEDVQTDIPSEPWNTGHDW 172 (440)
T ss_dssp CCCSEEEETTTTCCSHHHHHHHHHHHHHHHT--TSCEEEEECSSCTTC--C-CSSCCCSSCEEEEECCCCSSCCSSSCHH
T ss_pred cCccEEEEECccccCcchHHHHHHHHHHhcc--CCceEEEEeCCCCch--h-hhhhhcCCCeeEeeeccChHHHHHHHHH
Confidence 56777777665432 223332321 446677788775321 1 1111111222222222222222233344
Q ss_pred HhccCceEEEEEeecccHHHHHHHHHhcCCcEEEeeCCCChHHHHHHHHHhhCCCceEEEE-------EecCCccEEEec
Q psy437 80 WISNKVHVGHWTVVSKECDSVAAALAQERINAISYHAGLADKLRNEVQMKWISNKVHLYNV-------WKIQWKRIIWIH 152 (184)
Q Consensus 80 f~~g~~~vlVaT~tr~~~e~~a~gL~~~gi~~~vih~~~p~~~r~~~~~~f~~~~~~v~va-------~D~~~vr~v~~~ 152 (184)
+.....++||+++++..|+.++..|...|+++..+|+ +.|..+.+.|++|+..|+|+ +|+| +++|||+
T Consensus 173 l~~~~~~~lVF~~s~~~a~~l~~~L~~~~~~v~~lhg----~~R~~~~~~F~~g~~~vLVaT~v~e~GiDip-v~~VI~~ 247 (440)
T 1yks_A 173 ILADKRPTAWFLPSIRAANVMAASLRKAGKSVVVLNR----KTFEREYPTIKQKKPDFILATDIAEMGANLC-VERVLDC 247 (440)
T ss_dssp HHHCCSCEEEECSCHHHHHHHHHHHHHTTCCEEECCS----SSCC--------CCCSEEEESSSTTCCTTCC-CSEEEEC
T ss_pred HHhcCCCEEEEeCCHHHHHHHHHHHHHcCCCEEEecc----hhHHHHHhhhcCCCceEEEECChhheeeccC-ceEEEeC
Confidence 4444568999999999999999999999999999999 45788899999999999999 5999 9999997
Q ss_pred CC
Q psy437 153 SL 154 (184)
Q Consensus 153 ~~ 154 (184)
+.
T Consensus 248 g~ 249 (440)
T 1yks_A 248 RT 249 (440)
T ss_dssp CE
T ss_pred Cc
Confidence 65
No 133
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=97.99 E-value=4.3e-06 Score=73.29 Aligned_cols=75 Identities=8% Similarity=-0.110 Sum_probs=64.3
Q ss_pred HHHhccCceEEEEEeecccHHHHHHHHHhcCCcEEEeeCCCChHHHHHHHHHhhCCCceEEEE-------EecCCccEEE
Q psy437 78 MKWISNKVHVGHWTVVSKECDSVAAALAQERINAISYHAGLADKLRNEVQMKWISNKVHLYNV-------WKIQWKRIIW 150 (184)
Q Consensus 78 ~~f~~g~~~vlVaT~tr~~~e~~a~gL~~~gi~~~vih~~~p~~~r~~~~~~f~~~~~~v~va-------~D~~~vr~v~ 150 (184)
+.+.+...++||++++++.|+.++..|...|+++..+|++ .|..+.+.|++|+..|+|| +|+| +++||
T Consensus 349 ~~l~~~~~~~LVF~~s~~~a~~l~~~L~~~g~~v~~lhg~----~R~~~l~~F~~g~~~VLVaTdv~~rGiDi~-v~~VI 423 (618)
T 2whx_A 349 DWITDYQGKTVWFVPSIKAGNDIANCLRKSGKRVIQLSRK----TFDTEYPKTKLTDWDFVVTTDISEMGANFR-AGRVI 423 (618)
T ss_dssp HHHHHCCSCEEEECSSHHHHHHHHHHHHHTTCCEEEECTT----THHHHTTHHHHSCCSEEEECGGGGTTCCCC-CSEEE
T ss_pred HHHHhCCCCEEEEECChhHHHHHHHHHHHcCCcEEEEChH----HHHHHHHhhcCCCcEEEEECcHHHcCcccC-ceEEE
Confidence 3333445689999999999999999999999999999974 6777999999999999999 6997 99999
Q ss_pred ecCCCCC
Q psy437 151 IHSLVLI 157 (184)
Q Consensus 151 ~~~~p~~ 157 (184)
++.++..
T Consensus 424 d~g~~~~ 430 (618)
T 2whx_A 424 DPRRCLK 430 (618)
T ss_dssp ECCEEEE
T ss_pred ECcceec
Confidence 9987433
No 134
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=97.94 E-value=4.7e-06 Score=69.83 Aligned_cols=142 Identities=11% Similarity=0.026 Sum_probs=90.6
Q ss_pred CCCeEEEEEEccChH----HHHHHHHHhh--cCCCcEEEEeccHHHHHHHHHHHHhCCCeeEEecCCCCHHHHHHHHHHH
Q psy437 7 RANLKYEILPKKNVL----KEVISLIKAK--YSGQSGIVYCLTRKECDSVAAALAQERINAISYHAGLADKLRNEVQMKW 80 (184)
Q Consensus 7 R~Nl~y~v~~~~~k~----~~L~~~l~~~--~~~~~~IIf~~tr~~~e~la~~L~~~gi~~~~~hg~l~~~~R~~~~~~f 80 (184)
-.|+.+.|..+...+ ......+... ....+.|.++.|.... + ..+.....+...+....+......+++..
T Consensus 91 ~~~l~~vViDEaH~~~~~~~~~~~~l~~~~~~~~~~~l~~SAT~~~~--~-~~~~~~~~~i~~~~~~~~~~~~~~~~~~l 167 (431)
T 2v6i_A 91 VPNYNLYIMDEAHFLDPASVAARGYIETRVSMGDAGAIFMTATPPGT--T-EAFPPSNSPIIDEETRIPDKAWNSGYEWI 167 (431)
T ss_dssp CCCCSEEEEESTTCCSHHHHHHHHHHHHHHHTTSCEEEEEESSCTTC--C-CSSCCCSSCCEEEECCCCSSCCSSCCHHH
T ss_pred ccCCCEEEEeCCccCCccHHHHHHHHHHHhhCCCCcEEEEeCCCCcc--h-hhhcCCCCceeeccccCCHHHHHHHHHHH
Confidence 356777777665432 2333333322 1356677788776531 1 11111122222222222222222233333
Q ss_pred hccCceEEEEEeecccHHHHHHHHHhcCCcEEEeeCCCChHHHHHHHHHhhCCCceEEEE-------EecCCccEEEecC
Q psy437 81 ISNKVHVGHWTVVSKECDSVAAALAQERINAISYHAGLADKLRNEVQMKWISNKVHLYNV-------WKIQWKRIIWIHS 153 (184)
Q Consensus 81 ~~g~~~vlVaT~tr~~~e~~a~gL~~~gi~~~vih~~~p~~~r~~~~~~f~~~~~~v~va-------~D~~~vr~v~~~~ 153 (184)
.....++||++++++.++.++..|...|+++..+|++ .|..+.+.|++|+..|+|+ +|+| +.+||++.
T Consensus 168 ~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~v~~lhg~----~r~~~~~~f~~g~~~vLVaT~v~e~GiDip-~~~VI~~g 242 (431)
T 2v6i_A 168 TEFDGRTVWFVHSIKQGAEIGTCLQKAGKKVLYLNRK----TFESEYPKCKSEKWDFVITTDISEMGANFK-ADRVIDPR 242 (431)
T ss_dssp HSCSSCEEEECSSHHHHHHHHHHHHHTTCCEEEESTT----THHHHTTHHHHSCCSEEEECGGGGTSCCCC-CSEEEECC
T ss_pred HcCCCCEEEEeCCHHHHHHHHHHHHHcCCeEEEeCCc----cHHHHHHhhcCCCCeEEEECchHHcCcccC-CcEEEecC
Confidence 4445589999999999999999999999999999987 5677899999999999999 6999 99999886
Q ss_pred CCC
Q psy437 154 LVL 156 (184)
Q Consensus 154 ~p~ 156 (184)
.+.
T Consensus 243 ~~~ 245 (431)
T 2v6i_A 243 KTI 245 (431)
T ss_dssp EEE
T ss_pred ccc
Confidence 544
No 135
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=97.93 E-value=2.1e-05 Score=72.56 Aligned_cols=87 Identities=6% Similarity=0.003 Sum_probs=68.5
Q ss_pred ceEEEEEeecccHHHHHHHHHhcC------------CcE-EEeeCC----------C----------ChH----------
Q psy437 85 VHVGHWTVVSKECDSVAAALAQER------------INA-ISYHAG----------L----------ADK---------- 121 (184)
Q Consensus 85 ~~vlVaT~tr~~~e~~a~gL~~~g------------i~~-~vih~~----------~----------p~~---------- 121 (184)
.++||+|+++..|..++..|...+ +++ .++|++ + ++.
T Consensus 538 ~kamVf~~S~~~A~~~~~~l~~~~~~~~~~~~~~~~~k~avv~s~~~~~~~~~~G~~~~e~~~~~~~~~~~r~~l~~~I~ 617 (1038)
T 2w00_A 538 FNAMLAVSSVDAAKAYYATFKRLQEEAANKSATYKPLRIATIFSFAANEEQNAIGEISDETFDTSAMDSSAKEFLDAAIR 617 (1038)
T ss_dssp CEEEEEESSHHHHHHHHHHHHHHHHHHTTTSSSCCCCCEEEECCCCC------CCCCCCCCSCGGGSCHHHHHHHHHHHH
T ss_pred CcEEEEECCHHHHHHHHHHHHhhhhhhcccccccccCcEEEEEeCCCccccccccccccccccccccchhHHHHHHHHHH
Confidence 479999999999999999996533 554 567753 2 222
Q ss_pred -------------------HHHHHHHHhhCCCceEEEE-------EecCCccEEEecCCCCCccccccccccc-cCCc
Q psy437 122 -------------------LRNEVQMKWISNKVHLYNV-------WKIQWKRIIWIHSLVLIKPDYLPPILDL-RLGR 172 (184)
Q Consensus 122 -------------------~r~~~~~~f~~~~~~v~va-------~D~~~vr~v~~~~~p~~~e~y~~~i~~~-~~~r 172 (184)
.|..+.+.|++|+++|+++ ||.|.+ .++++|.|.+...|+|+++|+ |++.
T Consensus 618 dyn~~f~~~~~~~~~~~~~~R~~i~~~Fk~g~i~ILIvvd~lltGfDiP~l-~tlylDkpl~~~~liQaIGRtnR~~~ 694 (1038)
T 2w00_A 618 EYNSHFKTNFSTDSNGFQNYYRDLAQRVKNQDIDLLIVVGMFLTGFDAPTL-NTLFVDKNLRYHGLMQAFSRTNRIYD 694 (1038)
T ss_dssp HHHHHHTCCCCSSHHHHHHHHHHHHHHHHTTSSSEEEESSTTSSSCCCTTE-EEEEEESCCCHHHHHHHHHTTCCCCC
T ss_pred HHHHHhcccccccchhhhHHHHHHHHHHHcCCCeEEEEcchHHhCcCcccc-cEEEEccCCCccceeehhhccCcCCC
Confidence 2556677799999999999 799999 889999999999999999652 4443
No 136
>2l82_A Designed protein OR32; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Artificial gene}
Probab=97.92 E-value=0.00074 Score=45.61 Aligned_cols=106 Identities=13% Similarity=0.102 Sum_probs=75.7
Q ss_pred EEEeccHHHHHHHHHHHHhCCCeeEEecCCCCHHHHHHHHHHHhccC---------------------------ceEEEE
Q psy437 38 IVYCLTRKECDSVAAALAQERINAISYHAGLADKLRNEVQMKWISNK---------------------------VHVGHW 90 (184)
Q Consensus 38 IIf~~tr~~~e~la~~L~~~gi~~~~~hg~l~~~~R~~~~~~f~~g~---------------------------~~vlVa 90 (184)
++|.+..+-...+...+...|+.+..++++-+.+.|.+.++.|.+.. +-+||.
T Consensus 6 vvfssdpeilkeivreikrqgvrvvllysdqdekrrrerleefekqgvdvrtvedkedfrenireiwerypqldvvvivt 85 (162)
T 2l82_A 6 VVFSSDPEILKEIVREIKRQGVRVVLLYSDQDEKRRRERLEEFEKQGVDVRTVEDKEDFRENIREIWERYPQLDVVVIVT 85 (162)
T ss_dssp EEEESCHHHHHHHHHHHHHTTCEEEEEECCSCHHHHHHHHHHHHTTTCEEEECCSHHHHHHHHHHHHHHCTTCCEEEEEE
T ss_pred EEecCCHHHHHHHHHHHHhCCeEEEEEecCchHHHHHHHHHHHHHcCCceeeeccHHHHHHHHHHHHHhCCCCcEEEEEe
Confidence 45666666666677777777777777777777666666666665433 234677
Q ss_pred EeecccHHHHHHHHHhcCCcEEEeeCCCChHHHHHHHHHhhCCCceEEEEEec
Q psy437 91 TVVSKECDSVAAALAQERINAISYHAGLADKLRNEVQMKWISNKVHLYNVWKI 143 (184)
Q Consensus 91 T~tr~~~e~~a~gL~~~gi~~~vih~~~p~~~r~~~~~~f~~~~~~v~va~D~ 143 (184)
|+.+.........-...|+.++|+--+...+.|...|+.|++..+.+-...|+
T Consensus 86 tddkewikdfieeakergvevfvvynnkdddrrkeaqqefrsdgvdvrtvsdk 138 (162)
T 2l82_A 86 TDDKEWIKDFIEEAKERGVEVFVVYNNKDDDRRKEAQQEFRSDGVDVRTVSDK 138 (162)
T ss_dssp CCCHHHHHHHHHHHHHTTCEEEEEEECSCHHHHHHHHHHHCCSSCEEEEESSH
T ss_pred cCcHHHHHHHHHHHHhcCcEEEEEecCCCchhHHHHHHHhhhcCceeeecCCH
Confidence 77666655555555778999888777888999999999999998877665443
No 137
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=97.67 E-value=6.3e-05 Score=66.30 Aligned_cols=65 Identities=18% Similarity=0.125 Sum_probs=57.2
Q ss_pred ceEEEEEeecccHHHHHHHHHhcCCcEEEeeCCCChHHHHHHHHHhhCCCceEEEE-------EecCCccEEEecCCCCC
Q psy437 85 VHVGHWTVVSKECDSVAAALAQERINAISYHAGLADKLRNEVQMKWISNKVHLYNV-------WKIQWKRIIWIHSLVLI 157 (184)
Q Consensus 85 ~~vlVaT~tr~~~e~~a~gL~~~gi~~~vih~~~p~~~r~~~~~~f~~~~~~v~va-------~D~~~vr~v~~~~~p~~ 157 (184)
.++||+++++++|+.++..|...|+++..+|+++++.. |.++...|+|| +|+| +++||++.+...
T Consensus 397 ~~vLVFv~Tr~~ae~la~~L~~~g~~v~~lHG~l~q~e-------r~~~~~~VLVATdVaerGIDId-V~~VI~~Gl~~~ 468 (666)
T 3o8b_A 397 GRHLIFCHSKKKCDELAAKLSGLGINAVAYYRGLDVSV-------IPTIGDVVVVATDALMTGYTGD-FDSVIDCNTCVT 468 (666)
T ss_dssp SEEEEECSCHHHHHHHHHHHHTTTCCEEEECTTSCGGG-------SCSSSCEEEEECTTHHHHCCCC-BSEEEECCEEEE
T ss_pred CcEEEEeCCHHHHHHHHHHHHhCCCcEEEecCCCCHHH-------HHhCCCcEEEECChHHccCCCC-CcEEEecCcccc
Confidence 37899999999999999999999999999999999875 55566699999 6987 999999987653
No 138
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Probab=97.35 E-value=0.00024 Score=61.17 Aligned_cols=75 Identities=17% Similarity=0.088 Sum_probs=48.5
Q ss_pred CCCcEEEEeccHHHHHHHHHHHHhCCCeeEEecCCCCHHHHHHHHHHHhccCceEEE--EEeecccHHHHHHHHHhcC--
Q psy437 33 SGQSGIVYCLTRKECDSVAAALAQERINAISYHAGLADKLRNEVQMKWISNKVHVGH--WTVVSKECDSVAAALAQER-- 108 (184)
Q Consensus 33 ~~~~~IIf~~tr~~~e~la~~L~~~gi~~~~~hg~l~~~~R~~~~~~f~~g~~~vlV--aT~tr~~~e~~a~gL~~~g-- 108 (184)
.++.++||++|.+.++.+++.|.. .+ ...+|.. .+|..++++|+++. .|++ +|. ..++|+|.+|
T Consensus 383 ~~g~~lvff~S~~~~~~v~~~l~~--~~-~~~q~~~--~~~~~~l~~f~~~~-~il~~V~~~------~~~EGiD~~~~~ 450 (540)
T 2vl7_A 383 SSKSVLVFFPSYEMLESVRIHLSG--IP-VIEENKK--TRHEEVLELMKTGK-YLVMLVMRA------KESEGVEFREKE 450 (540)
T ss_dssp CSSEEEEEESCHHHHHHHHTTCTT--SC-EEESTTT--CCHHHHHHHHHTSC-CEEEEEC--------------------
T ss_pred CCCCEEEEeCCHHHHHHHHHHhcc--Cc-eEecCCC--CcHHHHHHHHhcCC-eEEEEEecC------ceecceecCCCc
Confidence 567899999999999999988864 22 3455553 46889999999864 5776 678 6799999998
Q ss_pred --CcEEEeeCCCCh
Q psy437 109 --INAISYHAGLAD 120 (184)
Q Consensus 109 --i~~~vih~~~p~ 120 (184)
++ +|+..++|.
T Consensus 451 ~~~~-~Vii~~lPf 463 (540)
T 2vl7_A 451 NLFE-SLVLAGLPY 463 (540)
T ss_dssp -CEE-EEEEESCCC
T ss_pred cccc-EEEEECCCC
Confidence 66 777799993
No 139
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19
Probab=97.24 E-value=0.00078 Score=52.94 Aligned_cols=97 Identities=10% Similarity=0.057 Sum_probs=75.0
Q ss_pred HHHHHhccCceEEEEEeecccHHHHHHHHHhc-CCcEEEeeCCCChHHHHHHHHHhhCC-CceE-EEE-------EecCC
Q psy437 76 VQMKWISNKVHVGHWTVVSKECDSVAAALAQE-RINAISYHAGLADKLRNEVQMKWISN-KVHL-YNV-------WKIQW 145 (184)
Q Consensus 76 ~~~~f~~g~~~vlVaT~tr~~~e~~a~gL~~~-gi~~~vih~~~p~~~r~~~~~~f~~~-~~~v-~va-------~D~~~ 145 (184)
++..+....-++||+|.....++.++..|... |+++..+||++|+..|..+.+.|.++ ++.| +++ +|.+.
T Consensus 104 ll~~~~~~~~kvlIFs~~~~~~~~l~~~L~~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~v~L~st~~~g~Glnl~~ 183 (271)
T 1z5z_A 104 IIEEALDEGDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLSVKAGGFGINLTS 183 (271)
T ss_dssp HHHHHHHTTCCEEEEESCHHHHHHHHHHHHHHHCSCCCEECTTSCHHHHHHHHHHHHHCTTCCEEEEECCTTCCCCCCTT
T ss_pred HHHHHHhCCCeEEEEeccHHHHHHHHHHHHHhcCCcEEEEECCCCHHHHHHHHHHhcCCCCCCEEEEehhhhcCCcCccc
Confidence 34444445568999999999999999999885 99989999999999999999999988 7774 444 59999
Q ss_pred ccEEEecCCCCCccccccccccc-cCCc
Q psy437 146 KRIIWIHSLVLIKPDYLPPILDL-RLGR 172 (184)
Q Consensus 146 vr~v~~~~~p~~~e~y~~~i~~~-~~~r 172 (184)
+.+||++|+|.++..|.|++.+. |.|.
T Consensus 184 a~~VI~~d~~wnp~~~~Q~~gR~~R~Gq 211 (271)
T 1z5z_A 184 ANRVIHFDRWWNPAVEDQATDRVYRIGQ 211 (271)
T ss_dssp CSEEEECSCCSCTTTC------------
T ss_pred CCEEEEECCCCChhHHHHHHHhccccCC
Confidence 99999999999999999999753 5554
No 140
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=96.59 E-value=0.0017 Score=54.87 Aligned_cols=61 Identities=5% Similarity=0.013 Sum_probs=31.2
Q ss_pred CceEEEEEeecccHHHHHHHHHhcC------------CcEEEeeCCCChHHHHHHHHHhhC-CCceEEEEEecC
Q psy437 84 KVHVGHWTVVSKECDSVAAALAQER------------INAISYHAGLADKLRNEVQMKWIS-NKVHLYNVWKIQ 144 (184)
Q Consensus 84 ~~~vlVaT~tr~~~e~~a~gL~~~g------------i~~~vih~~~p~~~r~~~~~~f~~-~~~~v~va~D~~ 144 (184)
..++||+|+++..++.++..|...+ .....+|+++|+..|..+.+.|++ |++.|+|+-|.-
T Consensus 389 ~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g~~~vLvaT~~~ 462 (555)
T 3tbk_A 389 ETKTILFVKTRALVDALKKWIEENPALSFLKPGILTGRGRTNRATGMTLPAQKCVLEAFRASGDNNILIATSVA 462 (555)
T ss_dssp TCCEEEECSSHHHHHHHHHHHHHCGGGTTCCEEECCC--------------------------CCSEEEECCCT
T ss_pred CceEEEEeCcHHHHHHHHHHHhhCcCcCceeeeEEEecCCcccccccCHHHHHHHHHHHhcCCCeeEEEEcchh
Confidence 4689999999999999999998763 233556679999999999999999 999999986654
No 141
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=96.03 E-value=0.055 Score=40.97 Aligned_cols=57 Identities=18% Similarity=0.088 Sum_probs=44.4
Q ss_pred CCcEEEEeccHHHHHHHHHHHHh----CCCeeEEecCCCCHHHHHHHHHHHhccCceEEEEEeec
Q psy437 34 GQSGIVYCLTRKECDSVAAALAQ----ERINAISYHAGLADKLRNEVQMKWISNKVHVGHWTVVS 94 (184)
Q Consensus 34 ~~~~IIf~~tr~~~e~la~~L~~----~gi~~~~~hg~l~~~~R~~~~~~f~~g~~~vlVaT~tr 94 (184)
+..+||.|+|++.+.++.+.+.+ .++.+..++|+.+.......+. ...+|+|+|+.+
T Consensus 102 ~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~----~~~~I~v~Tp~~ 162 (242)
T 3fe2_A 102 GPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLE----RGVEICIATPGR 162 (242)
T ss_dssp CCSEEEECSSHHHHHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHH----HCCSEEEECHHH
T ss_pred CCEEEEEeCcHHHHHHHHHHHHHHHhhcCceEEEEECCCChHHHHHHhc----CCCCEEEECHHH
Confidence 55689999999999999887765 3889999999988765544433 257899999854
No 142
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=95.55 E-value=0.048 Score=41.74 Aligned_cols=57 Identities=12% Similarity=0.042 Sum_probs=43.8
Q ss_pred CCcEEEEeccHHHHHHHHHHHHhC----CCeeEEecCCCCHHHHHHHHHHHhccCceEEEEEeec
Q psy437 34 GQSGIVYCLTRKECDSVAAALAQE----RINAISYHAGLADKLRNEVQMKWISNKVHVGHWTVVS 94 (184)
Q Consensus 34 ~~~~IIf~~tr~~~e~la~~L~~~----gi~~~~~hg~l~~~~R~~~~~~f~~g~~~vlVaT~tr 94 (184)
..++||.++|++.+.++++.+.+. ++.+..++|+.+.......+ .+..+|+|+|+.+
T Consensus 111 ~~~~lil~Ptr~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~I~v~Tp~~ 171 (249)
T 3ber_A 111 RLFALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLAL----AKKPHIIIATPGR 171 (249)
T ss_dssp SSCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEEECTTSCHHHHHHHH----HTCCSEEEECHHH
T ss_pred CceEEEEeCCHHHHHHHHHHHHHHhccCCeeEEEEECCCChHHHHHHh----cCCCCEEEECHHH
Confidence 456999999999999999888754 78899999998765443322 3567899999843
No 143
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=95.48 E-value=0.12 Score=38.48 Aligned_cols=58 Identities=21% Similarity=0.097 Sum_probs=39.8
Q ss_pred CCCcEEEEeccHHHHHHHHHHHHh---CCCeeEEecCCCCHHHHHHHHHHHhccCceEEEEEeec
Q psy437 33 SGQSGIVYCLTRKECDSVAAALAQ---ERINAISYHAGLADKLRNEVQMKWISNKVHVGHWTVVS 94 (184)
Q Consensus 33 ~~~~~IIf~~tr~~~e~la~~L~~---~gi~~~~~hg~l~~~~R~~~~~~f~~g~~~vlVaT~tr 94 (184)
.+.++||.++|++.+.++++.+.. .++.+..++|+.+...+... + ....+|+|+|+.+
T Consensus 93 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-~~~~~iiv~Tp~~ 153 (228)
T 3iuy_A 93 NGPGMLVLTPTRELALHVEAECSKYSYKGLKSICIYGGRNRNGQIED---I-SKGVDIIIATPGR 153 (228)
T ss_dssp CCCSEEEECSSHHHHHHHHHHHHHHCCTTCCEEEECC------CHHH---H-HSCCSEEEECHHH
T ss_pred CCCcEEEEeCCHHHHHHHHHHHHHhcccCceEEEEECCCChHHHHHH---h-cCCCCEEEECHHH
Confidence 456689999999999999999887 37788889998765433322 2 2357899999844
No 144
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=95.37 E-value=0.055 Score=40.17 Aligned_cols=56 Identities=20% Similarity=0.144 Sum_probs=44.8
Q ss_pred CcEEEEeccHHHHHHHHHHHHhC-----CCeeEEecCCCCHHHHHHHHHHHhccCceEEEEEee
Q psy437 35 QSGIVYCLTRKECDSVAAALAQE-----RINAISYHAGLADKLRNEVQMKWISNKVHVGHWTVV 93 (184)
Q Consensus 35 ~~~IIf~~tr~~~e~la~~L~~~-----gi~~~~~hg~l~~~~R~~~~~~f~~g~~~vlVaT~t 93 (184)
.++||.|+|+..++++++.+.+. ++++..++|+.+..... +.+.++..+|+|+|+.
T Consensus 83 ~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~---~~~~~~~~~i~v~T~~ 143 (220)
T 1t6n_A 83 VSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDE---EVLKKNCPHIVVGTPG 143 (220)
T ss_dssp CCEEEECSCHHHHHHHHHHHHHHTTTSTTCCEEEESCCSCHHHHH---HHHHHSCCSEEEECHH
T ss_pred EEEEEEeCCHHHHHHHHHHHHHHHhhCCCceEEEEeCCCChHHHH---HHHhcCCCCEEEeCHH
Confidence 47899999999999999888764 78899999998865543 3445566789999993
No 145
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=95.05 E-value=0.048 Score=47.63 Aligned_cols=78 Identities=14% Similarity=0.072 Sum_probs=51.6
Q ss_pred CCCcEEEEeccHHHHHHHHHHHHhCCCeeEEecCCCCHHHHHHHHHHHhccCceEEEEEeecccHHHHHHHHHhcC--Cc
Q psy437 33 SGQSGIVYCLTRKECDSVAAALAQERINAISYHAGLADKLRNEVQMKWISNKVHVGHWTVVSKECDSVAAALAQER--IN 110 (184)
Q Consensus 33 ~~~~~IIf~~tr~~~e~la~~L~~~gi~~~~~hg~l~~~~R~~~~~~f~~g~~~vlVaT~tr~~~e~~a~gL~~~g--i~ 110 (184)
.++.++||++|....+.+++.|. .+... ..-|++..+|..++++|+ ++..||++|.+- ..++|+|.+| .+
T Consensus 447 ~~g~~lvlF~Sy~~l~~v~~~l~--~~~~~-~~q~~~~~~~~~ll~~f~-~~~~vL~~v~~g----sf~EGiD~~g~~l~ 518 (620)
T 4a15_A 447 VKKNTIVYFPSYSLMDRVENRVS--FEHMK-EYRGIDQKELYSMLKKFR-RDHGTIFAVSGG----RLSEGINFPGNELE 518 (620)
T ss_dssp HCSCEEEEESCHHHHHHHTSSCC--SCCEE-CCTTCCSHHHHHHHHHHT-TSCCEEEEETTS----CC--------CCCC
T ss_pred CCCCEEEEeCCHHHHHHHHHHHH--hcchh-ccCCCChhHHHHHHHHhc-cCCcEEEEEecC----ceeccccCCCCceE
Confidence 45679999999999999998886 22222 445566778999999999 888899997411 2378999887 44
Q ss_pred EEEeeCCCC
Q psy437 111 AISYHAGLA 119 (184)
Q Consensus 111 ~~vih~~~p 119 (184)
.|+=.++|
T Consensus 519 -~viI~~lP 526 (620)
T 4a15_A 519 -MIILAGLP 526 (620)
T ss_dssp -EEEESSCC
T ss_pred -EEEEEcCC
Confidence 66667776
No 146
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=94.92 E-value=0.05 Score=40.90 Aligned_cols=56 Identities=9% Similarity=0.061 Sum_probs=44.0
Q ss_pred CCCcEEEEeccHHHHHHHHHHHHhC-----CCeeEEecCCCCHHHHHHHHHHHhccCceEEEEEee
Q psy437 33 SGQSGIVYCLTRKECDSVAAALAQE-----RINAISYHAGLADKLRNEVQMKWISNKVHVGHWTVV 93 (184)
Q Consensus 33 ~~~~~IIf~~tr~~~e~la~~L~~~-----gi~~~~~hg~l~~~~R~~~~~~f~~g~~~vlVaT~t 93 (184)
...++||.|+|++.+.++++.+.+. ++++..++|+.+..++...+ ...+|+|+|+.
T Consensus 91 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-----~~~~Iiv~Tp~ 151 (230)
T 2oxc_A 91 LSTQILILAPTREIAVQIHSVITAIGIKMEGLECHVFIGGTPLSQDKTRL-----KKCHIAVGSPG 151 (230)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTSCHHHHHHHT-----TSCSEEEECHH
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHhcccCCceEEEEeCCCCHHHHHHhc-----cCCCEEEECHH
Confidence 3467899999999999999988763 67889999998866544332 35789999994
No 147
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=94.70 E-value=0.45 Score=34.55 Aligned_cols=57 Identities=18% Similarity=0.040 Sum_probs=42.7
Q ss_pred CCcEEEEeccHHHHHHHHHHHHhC-----CCeeEEecCCCCHHHHHHHHHHHhccCceEEEEEeec
Q psy437 34 GQSGIVYCLTRKECDSVAAALAQE-----RINAISYHAGLADKLRNEVQMKWISNKVHVGHWTVVS 94 (184)
Q Consensus 34 ~~~~IIf~~tr~~~e~la~~L~~~-----gi~~~~~hg~l~~~~R~~~~~~f~~g~~~vlVaT~tr 94 (184)
..++||.|+|+..++++++.+.+. ++.+..++|+.+..+.... ..+..+|+|+|+.+
T Consensus 71 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~----~~~~~~i~v~T~~~ 132 (206)
T 1vec_A 71 NIQAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMR----LDDTVHVVIATPGR 132 (206)
T ss_dssp SCCEEEECSCHHHHHHHHHHHHHHTTTSSSCCEEEECSSSCHHHHHHH----TTSCCSEEEECHHH
T ss_pred CeeEEEEeCcHHHHHHHHHHHHHHHhhcCCceEEEEeCCccHHHHHHh----cCCCCCEEEeCHHH
Confidence 457999999999999999888653 6788889999875543221 23567899999843
No 148
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=94.57 E-value=0.2 Score=37.48 Aligned_cols=56 Identities=18% Similarity=0.051 Sum_probs=41.6
Q ss_pred CCCcEEEEeccHHHHHHHHHHHHhC----CCeeEEecCCCCHHHHHHHHHHHhccCceEEEEEee
Q psy437 33 SGQSGIVYCLTRKECDSVAAALAQE----RINAISYHAGLADKLRNEVQMKWISNKVHVGHWTVV 93 (184)
Q Consensus 33 ~~~~~IIf~~tr~~~e~la~~L~~~----gi~~~~~hg~l~~~~R~~~~~~f~~g~~~vlVaT~t 93 (184)
.+.++||.|+|+..+.++++.+.+. ++.+..++|+.+.......+ +..+|+|+|+.
T Consensus 96 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-----~~~~iiv~Tp~ 155 (236)
T 2pl3_A 96 DGLGVLIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEAERI-----NNINILVCTPG 155 (236)
T ss_dssp GCCCEEEECSSHHHHHHHHHHHHHHTTTSSCCEEEECCC--CHHHHHHH-----TTCSEEEECHH
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHhCCCCeeEEEEECCCCHHHHHHhC-----CCCCEEEECHH
Confidence 3567899999999999999988764 47888999997755433322 46789999983
No 149
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=94.32 E-value=0.2 Score=37.67 Aligned_cols=59 Identities=12% Similarity=0.047 Sum_probs=37.6
Q ss_pred CCCcEEEEeccHHHHHHHHHHHHhC----CCeeEEecCCCCHHHHHHHHHHHhccCceEEEEEeec
Q psy437 33 SGQSGIVYCLTRKECDSVAAALAQE----RINAISYHAGLADKLRNEVQMKWISNKVHVGHWTVVS 94 (184)
Q Consensus 33 ~~~~~IIf~~tr~~~e~la~~L~~~----gi~~~~~hg~l~~~~R~~~~~~f~~g~~~vlVaT~tr 94 (184)
...++||.++|++.+.++++.+... ++.+..++|+.+.. .....+..+..+|+|+|+.+
T Consensus 97 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~---~~~~~l~~~~~~Ilv~Tp~~ 159 (237)
T 3bor_A 97 KETQALVLAPTRELAQQIQKVILALGDYMGATCHACIGGTNVR---NEMQKLQAEAPHIVVGTPGR 159 (237)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECC----------------CCCSEEEECHHH
T ss_pred CCceEEEEECcHHHHHHHHHHHHHHhhhcCceEEEEECCCchH---HHHHHHhcCCCCEEEECHHH
Confidence 3467899999999999999988764 56778888886533 23344556668899999843
No 150
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=94.16 E-value=0.065 Score=39.83 Aligned_cols=57 Identities=14% Similarity=0.011 Sum_probs=40.9
Q ss_pred CCcEEEEeccHHHHHHHHHHHHhC--------CCeeEEecCCCCHHHHHHHHHHHhccCceEEEEEeec
Q psy437 34 GQSGIVYCLTRKECDSVAAALAQE--------RINAISYHAGLADKLRNEVQMKWISNKVHVGHWTVVS 94 (184)
Q Consensus 34 ~~~~IIf~~tr~~~e~la~~L~~~--------gi~~~~~hg~l~~~~R~~~~~~f~~g~~~vlVaT~tr 94 (184)
+.++||.|+|++.+.++++.+.+. ++.+..++|+.+..+... ...+..+|+|+|+.+
T Consensus 72 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~----~~~~~~~Iiv~Tp~~ 136 (219)
T 1q0u_A 72 EVQAVITAPTRELATQIYHETLKITKFCPKDRMIVARCLIGGTDKQKALE----KLNVQPHIVIGTPGR 136 (219)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHHTTSCGGGCCCEEEECCCSHHHHTTC----CCSSCCSEEEECHHH
T ss_pred CceEEEEcCcHHHHHHHHHHHHHHhhhcccccceEEEEEeCCCCHHHHHH----HcCCCCCEEEeCHHH
Confidence 457899999999999999887653 678888899865432211 112456899999843
No 151
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=93.88 E-value=0.67 Score=35.47 Aligned_cols=58 Identities=12% Similarity=-0.006 Sum_probs=42.7
Q ss_pred CCCcEEEEeccHHHHHHHHHHHHh----CCCeeEEecCCCCHHHHHHHHHHHhccCceEEEEEeec
Q psy437 33 SGQSGIVYCLTRKECDSVAAALAQ----ERINAISYHAGLADKLRNEVQMKWISNKVHVGHWTVVS 94 (184)
Q Consensus 33 ~~~~~IIf~~tr~~~e~la~~L~~----~gi~~~~~hg~l~~~~R~~~~~~f~~g~~~vlVaT~tr 94 (184)
.+.++||.+||+..++++++.+.+ .++.+..+.|+........ .+.. ..+|+|+|+.+
T Consensus 125 ~~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---~~~~-~~~Iiv~Tp~~ 186 (262)
T 3ly5_A 125 NGTGVLILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEAQ---KLGN-GINIIVATPGR 186 (262)
T ss_dssp GCCCEEEECSSHHHHHHHHHHHHHHTTTCCSCEEEECSSSCHHHHHH---HHHH-CCSEEEECHHH
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHHhhcCceEEEEECCCCHHHHHH---HhcC-CCCEEEEcHHH
Confidence 356789999999999999998876 3667788888876544332 2333 47899999843
No 152
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=93.55 E-value=0.14 Score=38.91 Aligned_cols=56 Identities=9% Similarity=-0.015 Sum_probs=42.2
Q ss_pred CcEEEEeccHHHHHHHHHHHHhC----CCeeEEecCCCCHHHHHHHHHHHhccCceEEEEEeec
Q psy437 35 QSGIVYCLTRKECDSVAAALAQE----RINAISYHAGLADKLRNEVQMKWISNKVHVGHWTVVS 94 (184)
Q Consensus 35 ~~~IIf~~tr~~~e~la~~L~~~----gi~~~~~hg~l~~~~R~~~~~~f~~g~~~vlVaT~tr 94 (184)
.++||.|+|++.+.++++.+.+. ++.+..++|+.+....... .....+|+|+|+.+
T Consensus 101 ~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~----~~~~~~Ivv~Tp~~ 160 (253)
T 1wrb_A 101 PKCLILAPTRELAIQILSESQKFSLNTPLRSCVVYGGADTHSQIRE----VQMGCHLLVATPGR 160 (253)
T ss_dssp CSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCSHHHHHH----HSSCCSEEEECHHH
T ss_pred ceEEEEECCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHH----hCCCCCEEEECHHH
Confidence 57999999999999998888753 5778888998875543322 23467899999954
No 153
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=93.53 E-value=0.22 Score=36.28 Aligned_cols=58 Identities=16% Similarity=0.059 Sum_probs=43.4
Q ss_pred CCCcEEEEeccHHHHHHHHHHHHhC--CCeeEEecCCCCHHHHHHHHHHHhccCceEEEEEeec
Q psy437 33 SGQSGIVYCLTRKECDSVAAALAQE--RINAISYHAGLADKLRNEVQMKWISNKVHVGHWTVVS 94 (184)
Q Consensus 33 ~~~~~IIf~~tr~~~e~la~~L~~~--gi~~~~~hg~l~~~~R~~~~~~f~~g~~~vlVaT~tr 94 (184)
...+++|.|+|+..+.++++.+... ++++..++|+.+.......+ ....+|+|+|+.+
T Consensus 71 ~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~i~v~T~~~ 130 (207)
T 2gxq_A 71 RKPRALVLTPTRELALQVASELTAVAPHLKVVAVYGGTGYGKQKEAL----LRGADAVVATPGR 130 (207)
T ss_dssp CCCSEEEECSSHHHHHHHHHHHHHHCTTSCEEEECSSSCSHHHHHHH----HHCCSEEEECHHH
T ss_pred CCCcEEEEECCHHHHHHHHHHHHHHhhcceEEEEECCCChHHHHHHh----hCCCCEEEECHHH
Confidence 3567899999999999999999875 46788899988755433322 2357899999843
No 154
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=93.16 E-value=0.3 Score=44.61 Aligned_cols=56 Identities=11% Similarity=-0.047 Sum_probs=46.8
Q ss_pred CCCcEEEEeccHHHHHHHHHHHHh----CCCeeEEecCCCCHHHHHHHHHHHhccCceEEEEEeec
Q psy437 33 SGQSGIVYCLTRKECDSVAAALAQ----ERINAISYHAGLADKLRNEVQMKWISNKVHVGHWTVVS 94 (184)
Q Consensus 33 ~~~~~IIf~~tr~~~e~la~~L~~----~gi~~~~~hg~l~~~~R~~~~~~f~~g~~~vlVaT~tr 94 (184)
.+.+++|.|+|+..|.+.++++.. .|+++..+.||++.++|.... ...|+|+|+++
T Consensus 119 ~G~qv~VvTPTreLA~Qdae~m~~l~~~lGLsv~~i~Gg~~~~~r~~ay------~~DIvyGTpgr 178 (997)
T 2ipc_A 119 TGKGVHVVTVNDYLARRDAEWMGPVYRGLGLSVGVIQHASTPAERRKAY------LADVTYVTNSE 178 (997)
T ss_dssp TCSCCEEEESSHHHHHHHHHHHHHHHHTTTCCEEECCTTCCHHHHHHHH------TSSEEEEEHHH
T ss_pred hCCCEEEEeCCHHHHHHHHHHHHHHHHhcCCeEEEEeCCCCHHHHHHHc------CCCEEEECchh
Confidence 567899999999999998888764 599999999999987776654 37899999954
No 155
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=92.85 E-value=0.15 Score=38.42 Aligned_cols=58 Identities=14% Similarity=0.001 Sum_probs=39.7
Q ss_pred CCcEEEEeccHHHHHHHHHHHHhC----CCeeEEecCCCCHHHHHHHHHHHhccCceEEEEEeec
Q psy437 34 GQSGIVYCLTRKECDSVAAALAQE----RINAISYHAGLADKLRNEVQMKWISNKVHVGHWTVVS 94 (184)
Q Consensus 34 ~~~~IIf~~tr~~~e~la~~L~~~----gi~~~~~hg~l~~~~R~~~~~~f~~g~~~vlVaT~tr 94 (184)
+.++||.+||++.+.++++.+.+. ++.+..++|+..... .......+..+|+|+|+.+
T Consensus 98 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~I~v~Tp~~ 159 (245)
T 3dkp_A 98 GFRALIISPTRELASQIHRELIKISEGTGFRIHMIHKAAVAAK---KFGPKSSKKFDILVTTPNR 159 (245)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEECCCHHHHHHT---TTSTTSCCCCCEEEECHHH
T ss_pred CceEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEecCccHHH---HhhhhhcCCCCEEEECHHH
Confidence 446899999999999999988764 667777776532211 1122234567899999743
No 156
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=92.61 E-value=0.084 Score=39.20 Aligned_cols=57 Identities=11% Similarity=-0.023 Sum_probs=37.0
Q ss_pred CCCcEEEEeccHHHHHHHHHHHHh----CCCeeEEecCCCCHHHHHHHHHHHhccCceEEEEEeec
Q psy437 33 SGQSGIVYCLTRKECDSVAAALAQ----ERINAISYHAGLADKLRNEVQMKWISNKVHVGHWTVVS 94 (184)
Q Consensus 33 ~~~~~IIf~~tr~~~e~la~~L~~----~gi~~~~~hg~l~~~~R~~~~~~f~~g~~~vlVaT~tr 94 (184)
...++||.++|+..+.++++.+.. .++.+..++|+.+..+.... +. ..+|+|+|+.+
T Consensus 81 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~~--~~~iiv~Tp~~ 141 (224)
T 1qde_A 81 KAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEG---LR--DAQIVVGTPGR 141 (224)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECC-------------CT--TCSEEEECHHH
T ss_pred CCceEEEEECCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHhc---CC--CCCEEEECHHH
Confidence 345789999999999999988875 36788889998765443322 22 27899999843
No 157
>3gk5_A Uncharacterized rhodanese-related protein TVG0868615; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.40A {Thermoplasma volcanium GSS1}
Probab=91.86 E-value=0.18 Score=33.44 Aligned_cols=49 Identities=16% Similarity=0.210 Sum_probs=37.4
Q ss_pred HHHHHHHHHhhcCCCcEEEEeccHHHHHHHHHHHHhCCCeeEEecCCCC
Q psy437 21 LKEVISLIKAKYSGQSGIVYCLTRKECDSVAAALAQERINAISYHAGLA 69 (184)
Q Consensus 21 ~~~L~~~l~~~~~~~~~IIf~~tr~~~e~la~~L~~~gi~~~~~hg~l~ 69 (184)
...|.+.+.+..+..+.++||.+-..+...+..|...|+++..+.||+.
T Consensus 42 ~~~l~~~~~~l~~~~~ivvyC~~G~rs~~aa~~L~~~G~~v~~l~GG~~ 90 (108)
T 3gk5_A 42 ISELREKWKILERDKKYAVICAHGNRSAAAVEFLSQLGLNIVDVEGGIQ 90 (108)
T ss_dssp HHHHHHHGGGSCTTSCEEEECSSSHHHHHHHHHHHTTTCCEEEETTHHH
T ss_pred HHHHHHHHHhCCCCCeEEEEcCCCcHHHHHHHHHHHcCCCEEEEcCcHH
Confidence 3445555544324567889999988899999999999998888999864
No 158
>3g5j_A Putative ATP/GTP binding protein; N-terminal domain of ATP/GTP binding protein, PSI, MCSG, STR genomics, protein structure initiative; HET: PGE; 1.76A {Clostridium difficile}
Probab=91.69 E-value=0.24 Score=33.56 Aligned_cols=48 Identities=13% Similarity=0.214 Sum_probs=35.5
Q ss_pred HHHHHHHhhcCC-CcEEEEe-ccHHHHHHHHHHHHhCCCeeEEecCCCCH
Q psy437 23 EVISLIKAKYSG-QSGIVYC-LTRKECDSVAAALAQERINAISYHAGLAD 70 (184)
Q Consensus 23 ~L~~~l~~~~~~-~~~IIf~-~tr~~~e~la~~L~~~gi~~~~~hg~l~~ 70 (184)
.+...+....+. .+.|+|| .+-..+...+..|...|+++..+.||+..
T Consensus 77 ~~~~~~~~~~~~~~~ivvyC~~~G~rs~~a~~~L~~~G~~v~~l~GG~~~ 126 (134)
T 3g5j_A 77 DIYLQAAELALNYDNIVIYCARGGMRSGSIVNLLSSLGVNVYQLEGGYKA 126 (134)
T ss_dssp HHHHHHHHHHTTCSEEEEECSSSSHHHHHHHHHHHHTTCCCEEETTHHHH
T ss_pred HHHHHHHHhccCCCeEEEEECCCChHHHHHHHHHHHcCCceEEEeCcHHH
Confidence 344444332244 6788899 57777889999999999998999999754
No 159
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=91.62 E-value=0.13 Score=40.45 Aligned_cols=79 Identities=9% Similarity=-0.079 Sum_probs=48.9
Q ss_pred CeEEEEEEccChHH-HHHHHHHhh---cCCCcEEEEeccHHHHHHHHHHHHhC-----CCeeEEecCCCCHHHHHHHHHH
Q psy437 9 NLKYEILPKKNVLK-EVISLIKAK---YSGQSGIVYCLTRKECDSVAAALAQE-----RINAISYHAGLADKLRNEVQMK 79 (184)
Q Consensus 9 Nl~y~v~~~~~k~~-~L~~~l~~~---~~~~~~IIf~~tr~~~e~la~~L~~~-----gi~~~~~hg~l~~~~R~~~~~~ 79 (184)
|+.........|.. .++.++... .....+||.+||++.|.++...+... ++.+..+.|+.+.....
T Consensus 133 ~~l~~a~TGsGKT~a~~lp~l~~l~~~~~~~~~lil~PtreLa~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~----- 207 (300)
T 3fmo_B 133 NLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQ----- 207 (300)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEESTTCCCCTTC-----
T ss_pred eEEEECCCCCCccHHHHHHHHHhhhccCCCceEEEEcCcHHHHHHHHHHHHHHHhhCCCcEEEEEeCCccHhhhh-----
Confidence 44333333345543 344444321 13346999999999999998888753 56777777776532211
Q ss_pred HhccCceEEEEEeec
Q psy437 80 WISNKVHVGHWTVVS 94 (184)
Q Consensus 80 f~~g~~~vlVaT~tr 94 (184)
....+|+|+|+.+
T Consensus 208 --~~~~~IlV~TP~~ 220 (300)
T 3fmo_B 208 --KISEQIVIGTPGT 220 (300)
T ss_dssp --CCCCSEEEECHHH
T ss_pred --cCCCCEEEECHHH
Confidence 3456899999954
No 160
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=90.27 E-value=0.51 Score=43.08 Aligned_cols=52 Identities=19% Similarity=0.245 Sum_probs=38.7
Q ss_pred CCCCCCeEEEEE---E--ccChHHHHHHHHHhh-cCCCcEEEEeccHHHHHHHHHHHH
Q psy437 4 SFNRANLKYEIL---P--KKNVLKEVISLIKAK-YSGQSGIVYCLTRKECDSVAAALA 55 (184)
Q Consensus 4 s~~R~Nl~y~v~---~--~~~k~~~L~~~l~~~-~~~~~~IIf~~tr~~~e~la~~L~ 55 (184)
|.+||.+..... . ...|...+++.+.+. ..+.|+||+|.|.+..|.+++.|.
T Consensus 407 PTn~p~~R~D~~d~vy~t~~~K~~AIv~eI~~~~~~GqPVLVgT~SIe~SE~LS~~L~ 464 (997)
T 2ipc_A 407 PTNRPVIRKDFPDVVYRTEKGKFYAVVEEIAEKYERGQPVLVGTISIEKSERLSQMLK 464 (997)
T ss_dssp CCSSCCCCEEEEEEEESSHHHHHHHHHHHHHHHHHHTCCEEEECSSHHHHHHHHHHHH
T ss_pred CCCCCcccccCCCeEEcCHHHHHHHHHHHHHHHHHCCCCEEEEeCCHHHHHHHHHHHh
Confidence 677888754322 1 224788877777543 257899999999999999999998
No 161
>2jtq_A Phage shock protein E; solution structure rhodanese, stress response, transferase; NMR {Escherichia coli} PDB: 2jtr_A 2jts_A
Probab=90.06 E-value=0.69 Score=28.84 Aligned_cols=47 Identities=21% Similarity=0.271 Sum_probs=33.3
Q ss_pred HHHHHHHHhh--cCCCcEEEEeccHHHHHHHHHHHHhCCCe-eEEecCCCC
Q psy437 22 KEVISLIKAK--YSGQSGIVYCLTRKECDSVAAALAQERIN-AISYHAGLA 69 (184)
Q Consensus 22 ~~L~~~l~~~--~~~~~~IIf~~tr~~~e~la~~L~~~gi~-~~~~hg~l~ 69 (184)
..+.+.+.+. .+..+.++||.+-..+...+..|.+.|+. +..+ ||+.
T Consensus 27 ~~l~~~~~~l~~~~~~~ivv~C~~g~rs~~aa~~L~~~G~~~v~~l-GG~~ 76 (85)
T 2jtq_A 27 KEVKERIATAVPDKNDTVKVYCNAGRQSGQAKEILSEMGYTHVENA-GGLK 76 (85)
T ss_dssp HHHHHHHHHHCCCTTSEEEEEESSSHHHHHHHHHHHHTTCSSEEEE-EETT
T ss_pred HHHHHHHHHhCCCCCCcEEEEcCCCchHHHHHHHHHHcCCCCEEec-cCHH
Confidence 3344444332 24567888999988889999999999996 4445 8765
No 162
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Probab=89.67 E-value=1 Score=38.35 Aligned_cols=71 Identities=14% Similarity=-0.019 Sum_probs=49.8
Q ss_pred cCceEEEEEeecccHHHHHHHHHhcCCcEEEeeCCCChHHHHHHHHHhhCCCceEEE--E-------EecCC----ccEE
Q psy437 83 NKVHVGHWTVVSKECDSVAAALAQERINAISYHAGLADKLRNEVQMKWISNKVHLYN--V-------WKIQW----KRII 149 (184)
Q Consensus 83 g~~~vlVaT~tr~~~e~~a~gL~~~gi~~~vih~~~p~~~r~~~~~~f~~~~~~v~v--a-------~D~~~----vr~v 149 (184)
...++||.+++...++.++..|.. .. ..+++.. ..+..+.+.|+.+. .|++ + +|.|+ ++.|
T Consensus 383 ~~g~~lvff~S~~~~~~v~~~l~~--~~-~~~q~~~--~~~~~~l~~f~~~~-~il~~V~~~~~~EGiD~~~~~~~~~~V 456 (540)
T 2vl7_A 383 SSKSVLVFFPSYEMLESVRIHLSG--IP-VIEENKK--TRHEEVLELMKTGK-YLVMLVMRAKESEGVEFREKENLFESL 456 (540)
T ss_dssp CSSEEEEEESCHHHHHHHHTTCTT--SC-EEESTTT--CCHHHHHHHHHTSC-CEEEEEC---------------CEEEE
T ss_pred CCCCEEEEeCCHHHHHHHHHHhcc--Cc-eEecCCC--CcHHHHHHHHhcCC-eEEEEEecCceecceecCCCcccccEE
Confidence 345799999999999999888854 55 5566554 45777888888765 3444 3 49987 8999
Q ss_pred EecCCCCCcc
Q psy437 150 WIHSLVLIKP 159 (184)
Q Consensus 150 ~~~~~p~~~e 159 (184)
|+..+|....
T Consensus 457 ii~~lPf~~~ 466 (540)
T 2vl7_A 457 VLAGLPYPNV 466 (540)
T ss_dssp EEESCCCCCT
T ss_pred EEECCCCCCC
Confidence 9999997666
No 163
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=88.92 E-value=2.4 Score=31.93 Aligned_cols=59 Identities=7% Similarity=-0.034 Sum_probs=46.0
Q ss_pred ChHHHHHHHHHhhcCCCcEEEEeccHHHHHHHHHHHHhCCCe-eEEecCCCCHHHHHHHHHHHhccCceEEEEEe
Q psy437 19 NVLKEVISLIKAKYSGQSGIVYCLTRKECDSVAAALAQERIN-AISYHAGLADKLRNEVQMKWISNKVHVGHWTV 92 (184)
Q Consensus 19 ~k~~~L~~~l~~~~~~~~~IIf~~tr~~~e~la~~L~~~gi~-~~~~hg~l~~~~R~~~~~~f~~g~~~vlVaT~ 92 (184)
.|.......+.. ...+++|+|+++..++++.+.+.+.++. +..++|+... ..+|+|+|.
T Consensus 120 GKT~~a~~~~~~--~~~~~liv~P~~~L~~q~~~~~~~~~~~~v~~~~g~~~~-------------~~~i~v~T~ 179 (237)
T 2fz4_A 120 GKTHVAMAAINE--LSTPTLIVVPTLALAEQWKERLGIFGEEYVGEFSGRIKE-------------LKPLTVSTY 179 (237)
T ss_dssp THHHHHHHHHHH--SCSCEEEEESSHHHHHHHHHHHGGGCGGGEEEESSSCBC-------------CCSEEEEEH
T ss_pred CHHHHHHHHHHH--cCCCEEEEeCCHHHHHHHHHHHHhCCCCeEEEEeCCCCC-------------cCCEEEEeH
Confidence 466655555544 3678999999999999999999888888 8888887542 457899997
No 164
>3ipz_A Monothiol glutaredoxin-S14, chloroplastic; electron transport, PL redox-active center, transit peptide, transport, oxidoreduc; 2.40A {Arabidopsis thaliana} PDB: 2lku_A
Probab=88.85 E-value=3 Score=27.38 Aligned_cols=56 Identities=7% Similarity=-0.065 Sum_probs=38.0
Q ss_pred CCCcEEEEec------cHHHHHHHHHHHHhCCCeeEEecCCCCHHHHHHHHHHHhccCceEE
Q psy437 33 SGQSGIVYCL------TRKECDSVAAALAQERINAISYHAGLADKLRNEVQMKWISNKVHVG 88 (184)
Q Consensus 33 ~~~~~IIf~~------tr~~~e~la~~L~~~gi~~~~~hg~l~~~~R~~~~~~f~~g~~~vl 88 (184)
...+.+||.. .+..|....+.|.+.|++...+.=..+++.+..+.+..-...++.|
T Consensus 16 ~~~~Vvvy~k~t~~~p~Cp~C~~ak~~L~~~gi~~~~~dI~~~~~~~~~l~~~~g~~tvP~i 77 (109)
T 3ipz_A 16 NSEKVVLFMKGTRDFPMCGFSNTVVQILKNLNVPFEDVNILENEMLRQGLKEYSNWPTFPQL 77 (109)
T ss_dssp TSSSEEEEESBCSSSBSSHHHHHHHHHHHHTTCCCEEEEGGGCHHHHHHHHHHHTCSSSCEE
T ss_pred ccCCEEEEEecCCCCCCChhHHHHHHHHHHcCCCcEEEECCCCHHHHHHHHHHHCCCCCCeE
Confidence 5578999987 4999999999999999887666543344444444443333345543
No 165
>3foj_A Uncharacterized protein; protein SSP1007, structural genomics, PSI-2, protein structure initiative; 1.60A {Staphylococcus saprophyticus subsp}
Probab=88.68 E-value=0.36 Score=31.27 Aligned_cols=37 Identities=19% Similarity=0.362 Sum_probs=31.8
Q ss_pred CCCcEEEEeccHHHHHHHHHHHHhCCCeeEEecCCCC
Q psy437 33 SGQSGIVYCLTRKECDSVAAALAQERINAISYHAGLA 69 (184)
Q Consensus 33 ~~~~~IIf~~tr~~~e~la~~L~~~gi~~~~~hg~l~ 69 (184)
+..+.++||.+-..+...+..|...|+++..+.||+.
T Consensus 55 ~~~~ivvyC~~g~rs~~a~~~L~~~G~~v~~l~GG~~ 91 (100)
T 3foj_A 55 DNETYYIICKAGGRSAQVVQYLEQNGVNAVNVEGGMD 91 (100)
T ss_dssp TTSEEEEECSSSHHHHHHHHHHHTTTCEEEEETTHHH
T ss_pred CCCcEEEEcCCCchHHHHHHHHHHCCCCEEEecccHH
Confidence 4467888999988899999999999998888999864
No 166
>1gmx_A GLPE protein; transferase, rhodanese, sulfurtransferase, glycerol metabolism; 1.1A {Escherichia coli} SCOP: c.46.1.3 PDB: 1gn0_A
Probab=88.16 E-value=0.53 Score=30.85 Aligned_cols=48 Identities=15% Similarity=0.239 Sum_probs=36.0
Q ss_pred HHHHHHHHhhcCCCcEEEEeccHHHHHHHHHHHHhCCCe-eEEecCCCC
Q psy437 22 KEVISLIKAKYSGQSGIVYCLTRKECDSVAAALAQERIN-AISYHAGLA 69 (184)
Q Consensus 22 ~~L~~~l~~~~~~~~~IIf~~tr~~~e~la~~L~~~gi~-~~~~hg~l~ 69 (184)
..+...+.+..+..+.++||.+-..+...+..|...|+. +..+.||+.
T Consensus 46 ~~l~~~~~~l~~~~~ivvyc~~g~rs~~a~~~L~~~G~~~v~~l~GG~~ 94 (108)
T 1gmx_A 46 DTLGAFMRDNDFDTPVMVMCYHGNSSKGAAQYLLQQGYDVVYSIDGGFE 94 (108)
T ss_dssp HHHHHHHHHSCTTSCEEEECSSSSHHHHHHHHHHHHTCSSEEEETTHHH
T ss_pred HHHHHHHHhcCCCCCEEEEcCCCchHHHHHHHHHHcCCceEEEecCCHH
Confidence 444445544324567888999988889999999999995 778889864
No 167
>3eme_A Rhodanese-like domain protein; alpha-beta-alpha sandwich, structural genomics; 2.00A {Staphylococcus aureus subsp} PDB: 3iwh_A 3mzz_A
Probab=87.85 E-value=0.35 Score=31.47 Aligned_cols=37 Identities=16% Similarity=0.276 Sum_probs=31.5
Q ss_pred CCCcEEEEeccHHHHHHHHHHHHhCCCeeEEecCCCC
Q psy437 33 SGQSGIVYCLTRKECDSVAAALAQERINAISYHAGLA 69 (184)
Q Consensus 33 ~~~~~IIf~~tr~~~e~la~~L~~~gi~~~~~hg~l~ 69 (184)
+..+.++||.+-..+...+..|...|+++..+.||+.
T Consensus 55 ~~~~iv~yC~~g~rs~~a~~~L~~~G~~v~~l~GG~~ 91 (103)
T 3eme_A 55 KNEIYYIVCAGGVRSAKVVEYLEANGIDAVNVEGGMH 91 (103)
T ss_dssp TTSEEEEECSSSSHHHHHHHHHHTTTCEEEEETTHHH
T ss_pred CCCeEEEECCCChHHHHHHHHHHHCCCCeEEeCCCHH
Confidence 4456888999988889999999999998888889864
No 168
>3zyw_A Glutaredoxin-3; metal binding protein; 1.84A {Homo sapiens}
Probab=87.76 E-value=3.4 Score=27.30 Aligned_cols=56 Identities=7% Similarity=-0.011 Sum_probs=38.0
Q ss_pred CCCcEEEEe------ccHHHHHHHHHHHHhCCCeeEEecCCCCHHHHHHHHHHHhccCceEE
Q psy437 33 SGQSGIVYC------LTRKECDSVAAALAQERINAISYHAGLADKLRNEVQMKWISNKVHVG 88 (184)
Q Consensus 33 ~~~~~IIf~------~tr~~~e~la~~L~~~gi~~~~~hg~l~~~~R~~~~~~f~~g~~~vl 88 (184)
...+.+||. +++..|....+.|.+.|++...+.=..+++.+..+.+..-...++.|
T Consensus 14 ~~~~Vvlf~kg~~~~~~Cp~C~~ak~~L~~~gi~y~~~di~~d~~~~~~l~~~~g~~tvP~i 75 (111)
T 3zyw_A 14 HAAPCMLFMKGTPQEPRCGFSKQMVEILHKHNIQFSSFDIFSDEEVRQGLKAYSSWPTYPQL 75 (111)
T ss_dssp TSSSEEEEESBCSSSBSSHHHHHHHHHHHHTTCCCEEEEGGGCHHHHHHHHHHHTCCSSCEE
T ss_pred hcCCEEEEEecCCCCCcchhHHHHHHHHHHcCCCeEEEECcCCHHHHHHHHHHHCCCCCCEE
Confidence 457899998 68899999999999999887666544455555544433223345544
No 169
>1wv9_A Rhodanese homolog TT1651; CDC25, phosphatase, sulfurtransferase, structural genomics, NPPSFA; 2.00A {Thermus thermophilus}
Probab=87.54 E-value=0.49 Score=30.20 Aligned_cols=35 Identities=23% Similarity=0.268 Sum_probs=30.6
Q ss_pred CcEEEEeccHHHHHHHHHHHHhCCCeeEEecCCCC
Q psy437 35 QSGIVYCLTRKECDSVAAALAQERINAISYHAGLA 69 (184)
Q Consensus 35 ~~~IIf~~tr~~~e~la~~L~~~gi~~~~~hg~l~ 69 (184)
.+.++||.+-..+...+..|...|+.+..+.||+.
T Consensus 54 ~~ivvyC~~g~rs~~a~~~L~~~G~~v~~l~GG~~ 88 (94)
T 1wv9_A 54 RPLLLVCEKGLLSQVAALYLEAEGYEAMSLEGGLQ 88 (94)
T ss_dssp SCEEEECSSSHHHHHHHHHHHHHTCCEEEETTGGG
T ss_pred CCEEEEcCCCChHHHHHHHHHHcCCcEEEEcccHH
Confidence 67888999988888999999999999777889875
No 170
>3iwh_A Rhodanese-like domain protein; alpha-beta-alpha sandwich, structural genomics, C structural genomics of infectious diseases, csgid; 2.00A {Staphylococcus aureus subsp} PDB: 3mzz_A
Probab=87.47 E-value=0.38 Score=31.67 Aligned_cols=36 Identities=17% Similarity=0.291 Sum_probs=31.0
Q ss_pred CCCcEEEEeccHHHHHHHHHHHHhCCCeeEEecCCC
Q psy437 33 SGQSGIVYCLTRKECDSVAAALAQERINAISYHAGL 68 (184)
Q Consensus 33 ~~~~~IIf~~tr~~~e~la~~L~~~gi~~~~~hg~l 68 (184)
+..+.++||.+-..+...+..|.+.|+.+..+.||+
T Consensus 55 ~~~~ivv~C~~G~rS~~aa~~L~~~G~~~~~l~GG~ 90 (103)
T 3iwh_A 55 KNEIYYIVCAGGVRSAKVVEYLEANGIDAVNVEGGM 90 (103)
T ss_dssp TTSEEEEECSSSSHHHHHHHHHHTTTCEEEEETTHH
T ss_pred CCCeEEEECCCCHHHHHHHHHHHHcCCCEEEecChH
Confidence 456788899998888899999999999988888886
No 171
>3flh_A Uncharacterized protein LP_1913; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.00A {Lactobacillus plantarum} PDB: 3fnj_A 3i3u_A
Probab=87.34 E-value=0.33 Score=32.88 Aligned_cols=49 Identities=16% Similarity=0.148 Sum_probs=35.5
Q ss_pred HHHHHHHHHhhcCCCcEEEEeccHHH--HHHHHHHHHhCCCeeEEecCCCC
Q psy437 21 LKEVISLIKAKYSGQSGIVYCLTRKE--CDSVAAALAQERINAISYHAGLA 69 (184)
Q Consensus 21 ~~~L~~~l~~~~~~~~~IIf~~tr~~--~e~la~~L~~~gi~~~~~hg~l~ 69 (184)
...|...+....+..+.|+||.+-.. +...+..|...|+++..+.||+.
T Consensus 58 ~~~l~~~~~~l~~~~~ivvyC~~g~r~~s~~a~~~L~~~G~~v~~l~GG~~ 108 (124)
T 3flh_A 58 AKDLATRIGELDPAKTYVVYDWTGGTTLGKTALLVLLSAGFEAYELAGALE 108 (124)
T ss_dssp HHHHHHHGGGSCTTSEEEEECSSSSCSHHHHHHHHHHHHTCEEEEETTHHH
T ss_pred HHHHHHHHhcCCCCCeEEEEeCCCCchHHHHHHHHHHHcCCeEEEeCCcHH
Confidence 34455555433245568889988765 78899999999999888889864
No 172
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=87.19 E-value=0.66 Score=33.71 Aligned_cols=55 Identities=9% Similarity=-0.049 Sum_probs=36.5
Q ss_pred CCcEEEEeccHHHHHH-HHHHHHh---CCCeeEEecCCCCHHHHHHHHHHHhccCceEEEEEe
Q psy437 34 GQSGIVYCLTRKECDS-VAAALAQ---ERINAISYHAGLADKLRNEVQMKWISNKVHVGHWTV 92 (184)
Q Consensus 34 ~~~~IIf~~tr~~~e~-la~~L~~---~gi~~~~~hg~l~~~~R~~~~~~f~~g~~~vlVaT~ 92 (184)
..++||.|+|+..+++ +.+.+.. .++.+..++|+.+...+...+. +..+|+|+|+
T Consensus 82 ~~~~lil~p~~~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~----~~~~i~v~T~ 140 (216)
T 3b6e_A 82 PGKVIVLVNKVLLVEQLFRKEFQPFLKKWYRVIGLSGDTQLKISFPEVV----KSCDIIISTA 140 (216)
T ss_dssp CCCEEEEESSHHHHHHHHHHTHHHHHTTTSCEEECCC---CCCCHHHHH----HHCSEEEEEH
T ss_pred CCcEEEEECHHHHHHHHHHHHHHHHhccCceEEEEeCCcccchhHHhhc----cCCCEEEECH
Confidence 5689999999999888 6555554 3678888998865433222211 2468999998
No 173
>3jy6_A Transcriptional regulator, LACI family; NYSGXRC, PSI-II, protein S initiative, structural genomics; 1.97A {Lactobacillus brevis}
Probab=87.16 E-value=6.6 Score=29.46 Aligned_cols=16 Identities=13% Similarity=0.248 Sum_probs=9.4
Q ss_pred ccHHHHHHHHHhcCCc
Q psy437 95 KECDSVAAALAQERIN 110 (184)
Q Consensus 95 ~~~e~~a~gL~~~gi~ 110 (184)
.....+++.|-..|.+
T Consensus 109 ~~g~~a~~~L~~~G~~ 124 (276)
T 3jy6_A 109 EAAKAATTAFRQQGYQ 124 (276)
T ss_dssp HHHHHHHHHHHTTTCC
T ss_pred HHHHHHHHHHHHcCCC
Confidence 3455666666666655
No 174
>3ipz_A Monothiol glutaredoxin-S14, chloroplastic; electron transport, PL redox-active center, transit peptide, transport, oxidoreduc; 2.40A {Arabidopsis thaliana} PDB: 2lku_A
Probab=86.89 E-value=4.8 Score=26.32 Aligned_cols=72 Identities=11% Similarity=-0.007 Sum_probs=51.6
Q ss_pred CCCCHHHHHHHHHHHhccCceEEEEEee------cccHHHHHHHHHhcCCcEEEeeCCCChHHHHHHHHHhhCCCceEEE
Q psy437 66 AGLADKLRNEVQMKWISNKVHVGHWTVV------SKECDSVAAALAQERINAISYHAGLADKLRNEVQMKWISNKVHLYN 139 (184)
Q Consensus 66 g~l~~~~R~~~~~~f~~g~~~vlVaT~t------r~~~e~~a~gL~~~gi~~~vih~~~p~~~r~~~~~~f~~~~~~v~v 139 (184)
++|+++.+..+.+...+. +|+|++.+ -..|..+-+.|+..|++...++.+-....+.++.+......++.+.
T Consensus 1 ~~~s~~~~~~v~~~i~~~--~Vvvy~k~t~~~p~Cp~C~~ak~~L~~~gi~~~~~dI~~~~~~~~~l~~~~g~~tvP~if 78 (109)
T 3ipz_A 1 SALTPQLKDTLEKLVNSE--KVVLFMKGTRDFPMCGFSNTVVQILKNLNVPFEDVNILENEMLRQGLKEYSNWPTFPQLY 78 (109)
T ss_dssp CCCCHHHHHHHHHHHTSS--SEEEEESBCSSSBSSHHHHHHHHHHHHTTCCCEEEEGGGCHHHHHHHHHHHTCSSSCEEE
T ss_pred CCCCHHHHHHHHHHHccC--CEEEEEecCCCCCCChhHHHHHHHHHHcCCCcEEEECCCCHHHHHHHHHHHCCCCCCeEE
Confidence 367887777666655543 57888764 6789999999999999977777776667777776654445565554
No 175
>3hix_A ALR3790 protein; rhodanese, rhodanese_3, Q8YQN0, Q8YQN0_anAsp, NSR437I, NESG, structural genomics, PSI-2, protein structure initiative; 1.92A {Anabaena SP} PDB: 3k9r_A
Probab=85.49 E-value=0.79 Score=30.00 Aligned_cols=37 Identities=16% Similarity=0.207 Sum_probs=31.2
Q ss_pred CCCcEEEEeccHHHHHHHHHHHHhCCCe-eEEecCCCC
Q psy437 33 SGQSGIVYCLTRKECDSVAAALAQERIN-AISYHAGLA 69 (184)
Q Consensus 33 ~~~~~IIf~~tr~~~e~la~~L~~~gi~-~~~~hg~l~ 69 (184)
+..+.|+||.+-..+...+..|...|+. +..+.||+.
T Consensus 51 ~~~~ivvyc~~g~rs~~a~~~L~~~G~~~v~~l~GG~~ 88 (106)
T 3hix_A 51 KSRDIYVYGAGDEQTSQAVNLLRSAGFEHVSELKGGLA 88 (106)
T ss_dssp TTSCEEEECSSHHHHHHHHHHHHHTTCSCEEECTTHHH
T ss_pred CCCeEEEEECCCChHHHHHHHHHHcCCcCEEEecCCHH
Confidence 4467888999988899999999999995 777888854
No 176
>3h75_A Periplasmic sugar-binding domain protein; protein structure initiative II (PSI II), sugar binding PROT alpha/beta fold; 1.60A {Pseudomonas fluorescens pf-5}
Probab=85.14 E-value=8.2 Score=30.13 Aligned_cols=73 Identities=8% Similarity=-0.098 Sum_probs=52.3
Q ss_pred HHHHHHHhCCCeeEEecCCCCHHHHHHHHHHHhc--cCceEEEEEeecccHHHHHHHHHhcCCcEEEeeCCCChH
Q psy437 49 SVAAALAQERINAISYHAGLADKLRNEVQMKWIS--NKVHVGHWTVVSKECDSVAAALAQERINAISYHAGLADK 121 (184)
Q Consensus 49 ~la~~L~~~gi~~~~~hg~l~~~~R~~~~~~f~~--g~~~vlVaT~tr~~~e~~a~gL~~~gi~~~vih~~~p~~ 121 (184)
-+.+.+.+.|+.+..+.++-+.......++.+.. ..+..||.++.....+.+...+...|++++.+....+..
T Consensus 25 g~~~~a~~~g~~~~~~~~~~~~~~~~~~i~~~i~~~~~vDgiIi~~~~~~~~~~~~~~~~~giPvV~~~~~~~~~ 99 (350)
T 3h75_A 25 FMQAAARDLGLDLRILYAERDPQNTLQQARELFQGRDKPDYLMLVNEQYVAPQILRLSQGSGIKLFIVNSPLTLD 99 (350)
T ss_dssp HHHHHHHHHTCEEEEEECTTCHHHHHHHHHHHHHSSSCCSEEEEECCSSHHHHHHHHHTTSCCEEEEEESCCCTT
T ss_pred HHHHHHHHcCCeEEEEECCCCHHHHHHHHHHHHhcCCCCCEEEEeCchhhHHHHHHHHHhCCCcEEEEcCCCChH
Confidence 3444455669998888877777766777888887 478877777644455566677788899987788777654
No 177
>3dbi_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative, PSI-2; HET: MSE; 2.45A {Escherichia coli K12}
Probab=84.91 E-value=8.3 Score=29.95 Aligned_cols=75 Identities=4% Similarity=-0.093 Sum_probs=49.0
Q ss_pred HHHHHHHHHHhCCCeeEEecCCCCHHHHHHHHHHHhccCceEEEEEeecccHHHHHHHHHhcCCcEEEeeCCCCh
Q psy437 46 ECDSVAAALAQERINAISYHAGLADKLRNEVQMKWISNKVHVGHWTVVSKECDSVAAALAQERINAISYHAGLAD 120 (184)
Q Consensus 46 ~~e~la~~L~~~gi~~~~~hg~l~~~~R~~~~~~f~~g~~~vlVaT~tr~~~e~~a~gL~~~gi~~~vih~~~p~ 120 (184)
....+.+.+.+.|+.+..+.+.-+.+.-...++.+....+..||..+.....+.+...+...++++.++....+.
T Consensus 81 ~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~~~~~~~~~~~~iPvV~~~~~~~~ 155 (338)
T 3dbi_A 81 LLFHAARMAEEKGRQLLLADGKHSAEEERQAIQYLLDLRCDAIMIYPRFLSVDEIDDIIDAHSQPIMVLNRRLRK 155 (338)
T ss_dssp HHHHHHHHHHHTTCEEEEEECTTSHHHHHHHHHHHHHTTCSEEEECCSSSCHHHHHHHHHHCSSCEEEESSCCSS
T ss_pred HHHHHHHHHHHCCCEEEEEeCCCChHHHHHHHHHHHhCCCCEEEEeCCCCChHHHHHHHHcCCCCEEEEcCCCCC
Confidence 344455566677888877776666665566777787777877777665544455566666777875556555543
No 178
>2yan_A Glutaredoxin-3; oxidoreductase; HET: GSH; 1.90A {Homo sapiens}
Probab=84.84 E-value=5.3 Score=25.68 Aligned_cols=55 Identities=5% Similarity=-0.041 Sum_probs=37.1
Q ss_pred CCcEEEEe------ccHHHHHHHHHHHHhCCCeeEEecCCCCHHHHHHHHHHHhccCceEE
Q psy437 34 GQSGIVYC------LTRKECDSVAAALAQERINAISYHAGLADKLRNEVQMKWISNKVHVG 88 (184)
Q Consensus 34 ~~~~IIf~------~tr~~~e~la~~L~~~gi~~~~~hg~l~~~~R~~~~~~f~~g~~~vl 88 (184)
..+.+||+ +++..|..+...|.+.+++...+.-..++..+..+.+.+-...++.|
T Consensus 16 ~~~vvvf~~g~~~~~~C~~C~~~~~~L~~~~i~~~~vdi~~~~~~~~~l~~~~g~~~vP~v 76 (105)
T 2yan_A 16 KASVMLFMKGNKQEAKCGFSKQILEILNSTGVEYETFDILEDEEVRQGLKAYSNWPTYPQL 76 (105)
T ss_dssp SSSEEEEESBCSSSBCTTHHHHHHHHHHHHTCCCEEEEGGGCHHHHHHHHHHHTCCSSCEE
T ss_pred cCCEEEEEecCCCCCCCccHHHHHHHHHHCCCCeEEEECCCCHHHHHHHHHHHCCCCCCeE
Confidence 45688887 57889999999999988876666555455555555444433455554
No 179
>3l49_A ABC sugar (ribose) transporter, periplasmic substrate-binding subunit; sugar binding/transporter, structural genomics, PSI; HET: UNL; 2.30A {Rhodobacter sphaeroides}
Probab=84.59 E-value=9.6 Score=28.61 Aligned_cols=10 Identities=10% Similarity=0.116 Sum_probs=4.4
Q ss_pred HHHHHHHHHh
Q psy437 97 CDSVAAALAQ 106 (184)
Q Consensus 97 ~e~~a~gL~~ 106 (184)
...+++.|-.
T Consensus 111 g~~~~~~l~~ 120 (291)
T 3l49_A 111 GAELALQMVA 120 (291)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3444444444
No 180
>3o74_A Fructose transport system repressor FRUR; dual transcriptional regulator, DNA, transcription; 2.00A {Pseudomonas putida} PDB: 3o75_A*
Probab=84.56 E-value=5.1 Score=29.82 Aligned_cols=25 Identities=16% Similarity=0.114 Sum_probs=14.3
Q ss_pred EEeecccHHHHHHHHHhcCCcEEEe
Q psy437 90 WTVVSKECDSVAAALAQERINAISY 114 (184)
Q Consensus 90 aT~tr~~~e~~a~gL~~~gi~~~vi 114 (184)
.++.......+++.|-..|.+-.++
T Consensus 101 ~~d~~~~~~~a~~~L~~~G~~~i~~ 125 (272)
T 3o74_A 101 ISDDRDASRQLAASLLSSAPRSIAL 125 (272)
T ss_dssp EECHHHHHHHHHHHHHTTCCSEEEE
T ss_pred EEchHHHHHHHHHHHHHCCCcEEEE
Confidence 3344445666777777777653333
No 181
>2k0z_A Uncharacterized protein HP1203; A/B domain, structural genomics, unknown function, PSI-2, PR structure initiative; NMR {Helicobacter pylori}
Probab=84.31 E-value=1.1 Score=29.42 Aligned_cols=37 Identities=5% Similarity=0.105 Sum_probs=31.5
Q ss_pred CCCcEEEEeccHHHHHHHHHHHHhCCCeeEEecCCCC
Q psy437 33 SGQSGIVYCLTRKECDSVAAALAQERINAISYHAGLA 69 (184)
Q Consensus 33 ~~~~~IIf~~tr~~~e~la~~L~~~gi~~~~~hg~l~ 69 (184)
+..+.++||.+-..+...+..|...|+....+.||+.
T Consensus 55 ~~~~ivvyC~~G~rs~~aa~~L~~~G~~~~~l~GG~~ 91 (110)
T 2k0z_A 55 KDKKVLLHCRAGRRALDAAKSMHELGYTPYYLEGNVY 91 (110)
T ss_dssp SSSCEEEECSSSHHHHHHHHHHHHTTCCCEEEESCGG
T ss_pred CCCEEEEEeCCCchHHHHHHHHHHCCCCEEEecCCHH
Confidence 4567889999988899999999999997677889975
No 182
>3tb6_A Arabinose metabolism transcriptional repressor; transcription regulation, arabinose binding, DNA binding Pro; HET: ARB; 2.21A {Bacillus subtilis}
Probab=84.27 E-value=9.8 Score=28.59 Aligned_cols=72 Identities=8% Similarity=-0.038 Sum_probs=35.7
Q ss_pred HHHHHHHHhCCCeeEEecCCCCHHHHHHHHHHHhccCceEEEEEeecc----cHHHHHHHHHhcCCcEEEeeCCCC
Q psy437 48 DSVAAALAQERINAISYHAGLADKLRNEVQMKWISNKVHVGHWTVVSK----ECDSVAAALAQERINAISYHAGLA 119 (184)
Q Consensus 48 e~la~~L~~~gi~~~~~hg~l~~~~R~~~~~~f~~g~~~vlVaT~tr~----~~e~~a~gL~~~gi~~~vih~~~p 119 (184)
+.+.+.+.+.|+.+..+...-+.+.-...++.+.+..+..||..+... ........+...|++++.+....+
T Consensus 35 ~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~~~~~~~~~~~~~~~~iPvV~~~~~~~ 110 (298)
T 3tb6_A 35 RGIESYLSEQGYSMLLTSTNNNPDNERRGLENLLSQHIDGLIVEPTKSALQTPNIGYYLNLEKNGIPFAMINASYA 110 (298)
T ss_dssp HHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHTCCSEEEECCSSTTSCCTTHHHHHHHHHTTCCEEEESSCCT
T ss_pred HHHHHHHHHCCCEEEEEeCCCChHHHHHHHHHHHHCCCCEEEEecccccccCCcHHHHHHHHhcCCCEEEEecCcC
Confidence 334444445566665555554444445555555555565555544321 222334445555666444444433
No 183
>3m9w_A D-xylose-binding periplasmic protein; xylose binding protein, conformational changes, SUGA protein; 2.15A {Escherichia coli} PDB: 3m9x_A* 3ma0_A*
Probab=83.30 E-value=12 Score=28.48 Aligned_cols=26 Identities=15% Similarity=-0.198 Sum_probs=13.4
Q ss_pred EEEeecccHHHHHHHHH-hcCCcEEEe
Q psy437 89 HWTVVSKECDSVAAALA-QERINAISY 114 (184)
Q Consensus 89 VaT~tr~~~e~~a~gL~-~~gi~~~vi 114 (184)
|.++.......+++.|- ..|.+..++
T Consensus 102 V~~D~~~~g~~a~~~L~~~~G~~~i~~ 128 (313)
T 3m9w_A 102 ISFDNEKVGELQAKALVDIVPQGNYFL 128 (313)
T ss_dssp EEECHHHHHHHHHHHHHHHCSSEEEEE
T ss_pred EecCHHHHHHHHHHHHHHhCCCCcEEE
Confidence 33344445556666665 566653333
No 184
>3gx8_A Monothiol glutaredoxin-5, mitochondrial; TRX fold, electron transport, mitochondrion, redox-active center, transit peptide, transport; 1.67A {Saccharomyces cerevisiae}
Probab=82.72 E-value=8.2 Score=25.81 Aligned_cols=56 Identities=7% Similarity=0.016 Sum_probs=36.6
Q ss_pred CCCcEEEEec------cHHHHHHHHHHHHhCCCe---eEEecCCCCHHHHHHHHHHHhccCceEE
Q psy437 33 SGQSGIVYCL------TRKECDSVAAALAQERIN---AISYHAGLADKLRNEVQMKWISNKVHVG 88 (184)
Q Consensus 33 ~~~~~IIf~~------tr~~~e~la~~L~~~gi~---~~~~hg~l~~~~R~~~~~~f~~g~~~vl 88 (184)
...+.+||.. .+..|..+.+.|.+.|++ ...+.-..+.+.+..+.+..-...++.|
T Consensus 14 ~~~~Vvvfsk~t~~~p~Cp~C~~ak~lL~~~gv~~~~~~~~dv~~~~~~~~~l~~~sg~~tvP~v 78 (121)
T 3gx8_A 14 ESAPVVLFMKGTPEFPKCGFSRATIGLLGNQGVDPAKFAAYNVLEDPELREGIKEFSEWPTIPQL 78 (121)
T ss_dssp HSCSEEEEESBCSSSBCTTHHHHHHHHHHHHTBCGGGEEEEECTTCHHHHHHHHHHHTCCSSCEE
T ss_pred ccCCEEEEEeccCCCCCCccHHHHHHHHHHcCCCcceEEEEEecCCHHHHHHHHHHhCCCCCCeE
Confidence 3468999988 488999999999999987 5445444455555544443323344443
No 185
>3uug_A Multiple sugar-binding periplasmic receptor CHVE; periplasmic binding protein, sugar-binding protein, sugar binding protein; HET: BDP; 1.75A {Agrobacterium tumefaciens} PDB: 3urm_A*
Probab=82.53 E-value=12 Score=28.69 Aligned_cols=74 Identities=11% Similarity=0.043 Sum_probs=53.7
Q ss_pred HHHHHHHHHhCCCeeEEecCCCCHHHHHHHHHHHhccCceEEEEEeecc-cHHHHHHHHHhcCCcEEEeeCCCCh
Q psy437 47 CDSVAAALAQERINAISYHAGLADKLRNEVQMKWISNKVHVGHWTVVSK-ECDSVAAALAQERINAISYHAGLAD 120 (184)
Q Consensus 47 ~e~la~~L~~~gi~~~~~hg~l~~~~R~~~~~~f~~g~~~vlVaT~tr~-~~e~~a~gL~~~gi~~~vih~~~p~ 120 (184)
..-+.+.+.+.|+.+..+.+.-+.+.-...++.+.+.++..||.++... ........+...|+++..+....|.
T Consensus 22 ~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~i~~~~~~~vdgiIi~~~~~~~~~~~~~~~~~~giPvV~~~~~~~~ 96 (330)
T 3uug_A 22 GNNIVKQLQEAGYKTDLQYADDDIPNQLSQIENMVTKGVKVLVIASIDGTTLSDVLKQAGEQGIKVIAYDRLIRN 96 (330)
T ss_dssp HHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHHTCSEEEECCSSGGGGHHHHHHHHHTTCEEEEESSCCCS
T ss_pred HHHHHHHHHHcCCEEEEeeCCCCHHHHHHHHHHHHHcCCCEEEEEcCCchhHHHHHHHHHHCCCCEEEECCCCCC
Confidence 4445566667899988887777777777888888888888888777553 3455566778889997667665543
No 186
>3nhv_A BH2092 protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 2.50A {Bacillus halodurans} PDB: 3o3w_A
Probab=82.08 E-value=0.94 Score=31.53 Aligned_cols=37 Identities=22% Similarity=0.285 Sum_probs=30.8
Q ss_pred CCCcEEEEeccH--HHHHHHHHHHHhCCCeeEEecCCCC
Q psy437 33 SGQSGIVYCLTR--KECDSVAAALAQERINAISYHAGLA 69 (184)
Q Consensus 33 ~~~~~IIf~~tr--~~~e~la~~L~~~gi~~~~~hg~l~ 69 (184)
+..+.|+||.+- ..+...+..|...|+++..+.||+.
T Consensus 71 ~~~~ivvyC~~g~~~rs~~aa~~L~~~G~~v~~l~GG~~ 109 (144)
T 3nhv_A 71 KEKVIITYCWGPACNGATKAAAKFAQLGFRVKELIGGIE 109 (144)
T ss_dssp TTSEEEEECSCTTCCHHHHHHHHHHHTTCEEEEEESHHH
T ss_pred CCCeEEEEECCCCccHHHHHHHHHHHCCCeEEEeCCcHH
Confidence 345678899987 5788899999999999888999964
No 187
>2fsx_A RV0390, COG0607: rhodanese-related sulfurtransferase; RV0390 BR SAD DATA with FBAR, structural genomics, PSI; 1.80A {Mycobacterium tuberculosis}
Probab=81.75 E-value=1.3 Score=30.86 Aligned_cols=37 Identities=16% Similarity=0.223 Sum_probs=30.4
Q ss_pred CCCcEEEEeccHHHHHHHHHHHHhCCCe-eEEecCCCC
Q psy437 33 SGQSGIVYCLTRKECDSVAAALAQERIN-AISYHAGLA 69 (184)
Q Consensus 33 ~~~~~IIf~~tr~~~e~la~~L~~~gi~-~~~~hg~l~ 69 (184)
+..+.|+||.+-..+...+..|...|+. +..+.||+.
T Consensus 79 ~~~~ivvyC~~G~rS~~aa~~L~~~G~~~v~~l~GG~~ 116 (148)
T 2fsx_A 79 HERPVIFLCRSGNRSIGAAEVATEAGITPAYNVLDGFE 116 (148)
T ss_dssp --CCEEEECSSSSTHHHHHHHHHHTTCCSEEEETTTTT
T ss_pred CCCEEEEEcCCChhHHHHHHHHHHcCCcceEEEcCChh
Confidence 4567899999877788899999999995 888999985
No 188
>2xw6_A MGS, methylglyoxal synthase; lyase; 1.08A {Thermus SP} PDB: 2x8w_A 1wo8_A
Probab=81.08 E-value=11 Score=26.08 Aligned_cols=78 Identities=8% Similarity=0.033 Sum_probs=48.3
Q ss_pred CCCCeEEEEEEccChHHHHHHHHHhh---cCCCcEEEEeccHHHHHHHHHHHHh-CCCeeEEecCCCCHHHHHHHHHHHh
Q psy437 6 NRANLKYEILPKKNVLKEVISLIKAK---YSGQSGIVYCLTRKECDSVAAALAQ-ERINAISYHAGLADKLRNEVQMKWI 81 (184)
Q Consensus 6 ~R~Nl~y~v~~~~~k~~~L~~~l~~~---~~~~~~IIf~~tr~~~e~la~~L~~-~gi~~~~~hg~l~~~~R~~~~~~f~ 81 (184)
++-||-+++.... | ..++.+.++. ..+. .|+ .|..++ +.|++ .|+++..+..+ +.+-+..+.+..+
T Consensus 2 ~~~~ialsv~D~d-K-~~~v~~a~~~~~ll~Gf-~l~--AT~gTa----~~L~e~~Gl~v~~v~k~-~~eG~p~I~d~I~ 71 (134)
T 2xw6_A 2 HMRALALIAHDAK-K-EEMVAFCQRHREVLARF-PLV--ATGTTG----RRIEEATGLTVEKLLSG-PLGGDQQMGARVA 71 (134)
T ss_dssp CSCEEEEEECGGG-H-HHHHHHHHHTHHHHTTS-CEE--ECHHHH----HHHHHHHCCCCEECSCG-GGTHHHHHHHHHH
T ss_pred CccEEEEEEeccc-H-HHHHHHHHHHHHHhCCC-EEE--EccHHH----HHHHHhhCceEEEEEec-CCCCcchHHHHHH
Confidence 3556777766552 3 3444444332 1222 333 354444 45555 69998887643 2135778999999
Q ss_pred ccCceEEEEEee
Q psy437 82 SNKVHVGHWTVV 93 (184)
Q Consensus 82 ~g~~~vlVaT~t 93 (184)
+|+++.+|.|+.
T Consensus 72 ~geIdlVInt~~ 83 (134)
T 2xw6_A 72 EGRILAVIFFRD 83 (134)
T ss_dssp TTCEEEEEEECC
T ss_pred CCCccEEEEccC
Confidence 999999999997
No 189
>1tq1_A AT5G66040, senescence-associated family protein; CESG, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana} SCOP: c.46.1.3
Probab=80.99 E-value=0.96 Score=30.70 Aligned_cols=37 Identities=14% Similarity=0.154 Sum_probs=31.4
Q ss_pred CCCcEEEEeccHHHHHHHHHHHHhCCCe-eEEecCCCC
Q psy437 33 SGQSGIVYCLTRKECDSVAAALAQERIN-AISYHAGLA 69 (184)
Q Consensus 33 ~~~~~IIf~~tr~~~e~la~~L~~~gi~-~~~~hg~l~ 69 (184)
+..+.|+||.+-..+...+..|...|+. +..+.||+.
T Consensus 81 ~~~~ivvyC~~G~rs~~aa~~L~~~G~~~v~~l~GG~~ 118 (129)
T 1tq1_A 81 QSDNIIVGCQSGGRSIKATTDLLHAGFTGVKDIVGGYS 118 (129)
T ss_dssp TTSSEEEEESSCSHHHHHHHHHHHHHCCSEEEEECCHH
T ss_pred CCCeEEEECCCCcHHHHHHHHHHHcCCCCeEEeCCcHH
Confidence 4567899999988888999999999996 778999974
No 190
>3l6u_A ABC-type sugar transport system periplasmic compo; structural genomics, nysgrc, target 11006S, PSI-2, protein S initiative; 1.90A {Exiguobacterium sibiricum}
Probab=80.65 E-value=15 Score=27.45 Aligned_cols=74 Identities=11% Similarity=0.076 Sum_probs=52.5
Q ss_pred HHHHHHHHHhCCCeeEEecCCCCHHHHHHHHHHHhccCceEEEEEeecc-cHHHHHHHHHhcCCcEEEeeCCCCh
Q psy437 47 CDSVAAALAQERINAISYHAGLADKLRNEVQMKWISNKVHVGHWTVVSK-ECDSVAAALAQERINAISYHAGLAD 120 (184)
Q Consensus 47 ~e~la~~L~~~gi~~~~~hg~l~~~~R~~~~~~f~~g~~~vlVaT~tr~-~~e~~a~gL~~~gi~~~vih~~~p~ 120 (184)
..-+.+.+.+.|+.+..+..+-+.+.-...++.+.+..+..||..+... ........+...|++++++....|.
T Consensus 27 ~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~~~~~~~~~~~~~~iPvV~~~~~~~~ 101 (293)
T 3l6u_A 27 INAFKAEAKANKYEALVATSQNSRISEREQILEFVHLKVDAIFITTLDDVYIGSAIEEAKKAGIPVFAIDRMIRS 101 (293)
T ss_dssp HHHHHHHHHHTTCEEEEEECSSCHHHHHHHHHHHHHTTCSEEEEECSCTTTTHHHHHHHHHTTCCEEEESSCCCC
T ss_pred HHHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHHcCCCEEEEecCChHHHHHHHHHHHHcCCCEEEecCCCCC
Confidence 3445556667799988888777777677788888888888777766443 3335566777889997777766664
No 191
>2hhg_A Hypothetical protein RPA3614; MCSG, structural genomics, rohopseudom palustris, PSI-2, protein structure initiative; 1.20A {Rhodopseudomonas palustris}
Probab=79.98 E-value=1.1 Score=30.56 Aligned_cols=37 Identities=11% Similarity=0.210 Sum_probs=31.2
Q ss_pred CCCcEEEEeccHHHHHHHHHHHHhCCCe-eEEecCCCC
Q psy437 33 SGQSGIVYCLTRKECDSVAAALAQERIN-AISYHAGLA 69 (184)
Q Consensus 33 ~~~~~IIf~~tr~~~e~la~~L~~~gi~-~~~~hg~l~ 69 (184)
+..+.|+||.+-..+...+..|...|+. +..+.||+.
T Consensus 85 ~~~~ivvyC~~G~rs~~a~~~L~~~G~~~v~~l~GG~~ 122 (139)
T 2hhg_A 85 EDKKFVFYCAGGLRSALAAKTAQDMGLKPVAHIEGGFG 122 (139)
T ss_dssp SSSEEEEECSSSHHHHHHHHHHHHHTCCSEEEETTHHH
T ss_pred CCCeEEEECCCChHHHHHHHHHHHcCCCCeEEecCCHH
Confidence 4567888999988888999999999996 888999864
No 192
>3d1p_A Putative thiosulfate sulfurtransferase YOR285W; atomic structure, atomic resolution structure, PSI, MCSG; HET: MSE; 0.98A {Saccharomyces cerevisiae}
Probab=79.93 E-value=1.2 Score=30.46 Aligned_cols=37 Identities=16% Similarity=0.278 Sum_probs=30.9
Q ss_pred CCCcEEEEeccHHHHHHHHHHHHhCCCe-eEEecCCCC
Q psy437 33 SGQSGIVYCLTRKECDSVAAALAQERIN-AISYHAGLA 69 (184)
Q Consensus 33 ~~~~~IIf~~tr~~~e~la~~L~~~gi~-~~~~hg~l~ 69 (184)
+..+.|+||.+-..+...+..|...|+. +..+.||+.
T Consensus 90 ~~~~ivvyC~~G~rs~~aa~~L~~~G~~~v~~l~GG~~ 127 (139)
T 3d1p_A 90 SAKELIFYCASGKRGGEAQKVASSHGYSNTSLYPGSMN 127 (139)
T ss_dssp TTSEEEEECSSSHHHHHHHHHHHTTTCCSEEECTTHHH
T ss_pred CCCeEEEECCCCchHHHHHHHHHHcCCCCeEEeCCcHH
Confidence 3456788999988889999999999996 778889864
No 193
>2wci_A Glutaredoxin-4; redox-active center, iron-sulfur cluster scaffolder, Fe2S2, homodimer, transport, glutathione, thioredoxin fold; HET: GSH; 1.90A {Escherichia coli} PDB: 1yka_A
Probab=79.81 E-value=6 Score=27.21 Aligned_cols=64 Identities=11% Similarity=-0.054 Sum_probs=41.7
Q ss_pred HHHHHHHHHhhcCCCcEEEEec------cHHHHHHHHHHHHhCCCeeEEecCCCCHHHHHHHHHHHhccCceEE
Q psy437 21 LKEVISLIKAKYSGQSGIVYCL------TRKECDSVAAALAQERINAISYHAGLADKLRNEVQMKWISNKVHVG 88 (184)
Q Consensus 21 ~~~L~~~l~~~~~~~~~IIf~~------tr~~~e~la~~L~~~gi~~~~~hg~l~~~~R~~~~~~f~~g~~~vl 88 (184)
.+.+.+.+.. .+.+||+. ++..|..+...|.+.|++...+.-..+++.+..+.+..-...+++|
T Consensus 25 ~~~v~~~i~~----~~Vvvy~ks~~~~~~Cp~C~~ak~~L~~~gv~y~~vdI~~d~~~~~~L~~~~G~~tvP~V 94 (135)
T 2wci_A 25 IEKIQRQIAE----NPILLYMKGSPKLPSCGFSAQAVQALAACGERFAYVDILQNPDIRAELPKYANWPTFPQL 94 (135)
T ss_dssp HHHHHHHHHH----CSEEEEESBCSSSBSSHHHHHHHHHHHTTCSCCEEEEGGGCHHHHHHHHHHHTCCSSCEE
T ss_pred HHHHHHHhcc----CCEEEEEEecCCCCCCccHHHHHHHHHHcCCceEEEECCCCHHHHHHHHHHHCCCCcCEE
Confidence 3444455533 57888876 6889999999999999887776555555555555444333345544
No 194
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=79.40 E-value=3.5 Score=31.56 Aligned_cols=53 Identities=13% Similarity=-0.029 Sum_probs=38.5
Q ss_pred CCCcEEEEeccHHHHHHHHHHHHhCCC----eeEEecCCCCHHHHHHHHHHHhccCceEEEEEe
Q psy437 33 SGQSGIVYCLTRKECDSVAAALAQERI----NAISYHAGLADKLRNEVQMKWISNKVHVGHWTV 92 (184)
Q Consensus 33 ~~~~~IIf~~tr~~~e~la~~L~~~gi----~~~~~hg~l~~~~R~~~~~~f~~g~~~vlVaT~ 92 (184)
...++||.|+|+..++++.+.|.+.+. .+..++|+.+..+ -..+..+|+|+|.
T Consensus 156 ~~~~~lil~Pt~~L~~q~~~~l~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~I~v~T~ 212 (282)
T 1rif_A 156 YEGKILIIVPTTALTTQMADDFVDYRLFSHAMIKKIGGGASKDD-------KYKNDAPVVVGTW 212 (282)
T ss_dssp CSSEEEEECSSHHHHHHHHHHHHHHTSCCGGGEEECSTTCSSTT-------CCCTTCSEEEECH
T ss_pred CCCeEEEEECCHHHHHHHHHHHHHhcccccceEEEEeCCCcchh-------hhccCCcEEEEch
Confidence 345899999999999999999987543 4566777755432 1224678999999
No 195
>3ilm_A ALR3790 protein; rhodanese-like, NSR437H, NESG, structural genomics, protein structure initiative, northeast structural genomics consortium; 2.26A {Nostoc SP} PDB: 2kl3_A
Probab=79.17 E-value=1.7 Score=30.03 Aligned_cols=37 Identities=16% Similarity=0.207 Sum_probs=30.6
Q ss_pred CCCcEEEEeccHHHHHHHHHHHHhCCCe-eEEecCCCC
Q psy437 33 SGQSGIVYCLTRKECDSVAAALAQERIN-AISYHAGLA 69 (184)
Q Consensus 33 ~~~~~IIf~~tr~~~e~la~~L~~~gi~-~~~~hg~l~ 69 (184)
+..+.|+||.+-..+...+..|...|+. +..+.||+.
T Consensus 55 ~~~~ivvyC~~g~rs~~aa~~L~~~G~~~v~~l~GG~~ 92 (141)
T 3ilm_A 55 KSRDIYVYGAGDEQTSQAVNLLRSAGFEHVSELKGGLA 92 (141)
T ss_dssp TTSEEEEECSSHHHHHHHHHHHHHTTCCSEEECTTHHH
T ss_pred CCCeEEEEECCChHHHHHHHHHHHcCCCCEEEecCHHH
Confidence 3456788999988899999999999996 777888853
No 196
>1qxn_A SUD, sulfide dehydrogenase; polysulfide-sulfur transferase, homodimer; NMR {Wolinella succinogenes} SCOP: c.46.1.3
Probab=79.08 E-value=1.1 Score=30.89 Aligned_cols=37 Identities=14% Similarity=0.278 Sum_probs=31.0
Q ss_pred CCCcEEEEeccHHHHHHHHHHHHhCCCe-eEEecCCCC
Q psy437 33 SGQSGIVYCLTRKECDSVAAALAQERIN-AISYHAGLA 69 (184)
Q Consensus 33 ~~~~~IIf~~tr~~~e~la~~L~~~gi~-~~~~hg~l~ 69 (184)
+..+.|+||.+-..+...+..|...|+. +..+.||+.
T Consensus 81 ~~~~ivvyC~~G~rS~~aa~~L~~~G~~~v~~l~GG~~ 118 (137)
T 1qxn_A 81 PEKPVVVFCKTAARAALAGKTLREYGFKTIYNSEGGMD 118 (137)
T ss_dssp TTSCEEEECCSSSCHHHHHHHHHHHTCSCEEEESSCHH
T ss_pred CCCeEEEEcCCCcHHHHHHHHHHHcCCcceEEEcCcHH
Confidence 4567889999988888899999999994 888999964
No 197
>3egc_A Putative ribose operon repressor; structural genomics, unknown function, DNA-binding, transcri transcription regulation, PSI-2; 2.35A {Burkholderia thailandensis}
Probab=78.95 E-value=8.8 Score=28.95 Aligned_cols=59 Identities=3% Similarity=0.072 Sum_probs=28.9
Q ss_pred HHHHHHHhCCCeeEEecCCCCHHHHHHHHHHHhccCceE-------------EEEEeecccHHHHHHHHHhcCCc
Q psy437 49 SVAAALAQERINAISYHAGLADKLRNEVQMKWISNKVHV-------------GHWTVVSKECDSVAAALAQERIN 110 (184)
Q Consensus 49 ~la~~L~~~gi~~~~~hg~l~~~~R~~~~~~f~~g~~~v-------------lVaT~tr~~~e~~a~gL~~~gi~ 110 (184)
.+.+.|...++....+.+.... ...++.+....+++ -|.++.......+++.|-..|.+
T Consensus 55 ~~~~~l~~~~vdgiIi~~~~~~---~~~~~~~~~~~iPvV~~~~~~~~~~~~~V~~D~~~~g~~a~~~L~~~G~~ 126 (291)
T 3egc_A 55 EAVGQFFERRVDGLILAPSEGE---HDYLRTELPKTFPIVAVNRELRIPGCGAVLSENVRGARTAVEYLIARGHT 126 (291)
T ss_dssp HHHHHHHHTTCSEEEECCCSSC---CHHHHHSSCTTSCEEEESSCCCCTTCEEEEECHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHCCCCEEEEeCCCCC---hHHHHHhhccCCCEEEEecccCCCCCCEEEECcHHHHHHHHHHHHHcCCC
Confidence 3444555556655555443221 12334444333333 23344445566777777666655
No 198
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=78.87 E-value=2.1 Score=36.44 Aligned_cols=74 Identities=11% Similarity=-0.010 Sum_probs=47.8
Q ss_pred CCCcEEEEeccHHHHHHHHHHHHhCCCeeEEecCCCCHHHHHHHHHHHhccCceEEEEE--eecccHHHHHHHHHhc---
Q psy437 33 SGQSGIVYCLTRKECDSVAAALAQERINAISYHAGLADKLRNEVQMKWISNKVHVGHWT--VVSKECDSVAAALAQE--- 107 (184)
Q Consensus 33 ~~~~~IIf~~tr~~~e~la~~L~~~gi~~~~~hg~l~~~~R~~~~~~f~~g~~~vlVaT--~tr~~~e~~a~gL~~~--- 107 (184)
.++.++||++|.+..+.+++. .+.++..=..+++ +...++.|+.+...||++| .++ ++|+|.+
T Consensus 392 ~~g~~lvlF~Sy~~l~~v~~~---~~~~v~~q~~~~~---~~~~~~~~~~~~~~vl~~v~gg~~------~EGiD~~d~~ 459 (551)
T 3crv_A 392 AKANVLVVFPSYEIMDRVMSR---ISLPKYVESEDSS---VEDLYSAISANNKVLIGSVGKGKL------AEGIELRNND 459 (551)
T ss_dssp CSSEEEEEESCHHHHHHHHTT---CCSSEEECCSSCC---HHHHHHHTTSSSSCEEEEESSCCS------CCSSCCEETT
T ss_pred CCCCEEEEecCHHHHHHHHHh---cCCcEEEcCCCCC---HHHHHHHHHhcCCeEEEEEeccee------cccccccccC
Confidence 567899999999999998873 3443332222344 4567778854444788888 433 6688888
Q ss_pred C--CcEEEeeCCCC
Q psy437 108 R--INAISYHAGLA 119 (184)
Q Consensus 108 g--i~~~vih~~~p 119 (184)
| .+ .|+=.++|
T Consensus 460 g~~l~-~viI~~lP 472 (551)
T 3crv_A 460 RSLIS-DVVIVGIP 472 (551)
T ss_dssp EESEE-EEEEESCC
T ss_pred Cccee-EEEEEcCC
Confidence 4 34 55555544
No 199
>3e61_A Putative transcriptional repressor of ribose OPER; structural genomics, DNA-binding, transcripti regulation, PSI-2; 2.00A {Staphylococcus saprophyticus subsp}
Probab=78.25 E-value=15 Score=27.25 Aligned_cols=20 Identities=15% Similarity=-0.054 Sum_probs=8.1
Q ss_pred EeecccHHHHHHHHHhcCCc
Q psy437 91 TVVSKECDSVAAALAQERIN 110 (184)
Q Consensus 91 T~tr~~~e~~a~gL~~~gi~ 110 (184)
++.......+++.|-..|.+
T Consensus 104 ~D~~~~g~~a~~~L~~~G~~ 123 (277)
T 3e61_A 104 TNHFKGGQLQAEVVRKGKGK 123 (277)
T ss_dssp --HHHHHHHHHHHHHHTTCC
T ss_pred echHHHHHHHHHHHHHCCCC
Confidence 33333444445555444443
No 200
>3g1w_A Sugar ABC transporter; sugar-binding protein, bacillus halod target 11229F, transport protein, structural genomics; 2.02A {Bacillus halodurans c-125}
Probab=77.44 E-value=17 Score=27.44 Aligned_cols=22 Identities=9% Similarity=-0.230 Sum_probs=8.7
Q ss_pred CHHHHHHHHHHHhccCceEEEE
Q psy437 69 ADKLRNEVQMKWISNKVHVGHW 90 (184)
Q Consensus 69 ~~~~R~~~~~~f~~g~~~vlVa 90 (184)
+.+.....++.+.+..+..||.
T Consensus 46 ~~~~~~~~i~~l~~~~vdgiIi 67 (305)
T 3g1w_A 46 DIQEQITVLEQAIAKNPAGIAI 67 (305)
T ss_dssp CHHHHHHHHHHHHHHCCSEEEE
T ss_pred CHHHHHHHHHHHHHhCCCEEEE
Confidence 3333333444444444444333
No 201
>2wem_A Glutaredoxin-related protein 5; chromosome 14 open reading frame 87, Fe/S cluster, oxidoreductase, thioredoxin family, GLRX5, FLB4739, C14ORF87; HET: GTT; 2.40A {Homo sapiens} PDB: 2wul_A*
Probab=77.03 E-value=14 Score=24.66 Aligned_cols=63 Identities=13% Similarity=0.082 Sum_probs=41.9
Q ss_pred HHHHHHHHhhcCCCcEEEEec------cHHHHHHHHHHHHhCCCe-eEEecCCCCHHHHHHHHHHHhccCceEE
Q psy437 22 KEVISLIKAKYSGQSGIVYCL------TRKECDSVAAALAQERIN-AISYHAGLADKLRNEVQMKWISNKVHVG 88 (184)
Q Consensus 22 ~~L~~~l~~~~~~~~~IIf~~------tr~~~e~la~~L~~~gi~-~~~~hg~l~~~~R~~~~~~f~~g~~~vl 88 (184)
..+.+++.+ .+.+||.. .+..|..+.+.|.+.|++ ...+.=..+.+.+..+.+..-...++.|
T Consensus 11 ~~v~~~i~~----~~Vvvfsk~t~~~p~Cp~C~~ak~lL~~~gv~~~~~vdV~~d~~~~~~l~~~tg~~tvP~v 80 (118)
T 2wem_A 11 EQLDALVKK----DKVVVFLKGTPEQPQCGFSNAVVQILRLHGVRDYAAYNVLDDPELRQGIKDYSNWPTIPQV 80 (118)
T ss_dssp HHHHHHHHH----SSEEEEESBCSSSBSSHHHHHHHHHHHHTTCCCCEEEESSSCHHHHHHHHHHHTCCSSCEE
T ss_pred HHHHHHhcc----CCEEEEEecCCCCCccHHHHHHHHHHHHcCCCCCEEEEcCCCHHHHHHHHHHhCCCCcCeE
Confidence 445555544 68999988 589999999999999985 6666545555555554443333345544
No 202
>3ksm_A ABC-type sugar transport system, periplasmic COMP; periplasmic component, PSI- 11023L, structural genomics, protein structure initiative; HET: BDR; 1.90A {Hahella chejuensis}
Probab=76.96 E-value=18 Score=26.70 Aligned_cols=73 Identities=10% Similarity=-0.018 Sum_probs=48.8
Q ss_pred HHHHHHHHHhCCCeeEEec--CCCCHHHHHHHHHHHhccC-ceEEEEEeec-ccHHHHHHHHHhcCCcEEEeeCCCC
Q psy437 47 CDSVAAALAQERINAISYH--AGLADKLRNEVQMKWISNK-VHVGHWTVVS-KECDSVAAALAQERINAISYHAGLA 119 (184)
Q Consensus 47 ~e~la~~L~~~gi~~~~~h--g~l~~~~R~~~~~~f~~g~-~~vlVaT~tr-~~~e~~a~gL~~~gi~~~vih~~~p 119 (184)
..-+.+.+.+.|+.+..+. ++-+.+.-...++.+.+.. +..||..+.. ...+.....+...|++++.+....|
T Consensus 19 ~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~i~~l~~~~~vdgii~~~~~~~~~~~~~~~~~~~~ipvV~~~~~~~ 95 (276)
T 3ksm_A 19 YLGAQKAADEAGVTLLHRSTKDDGDIAGQIQILSYHLSQAPPDALILAPNSAEDLTPSVAQYRARNIPVLVVDSDLA 95 (276)
T ss_dssp HHHHHHHHHHHTCEEEECCCSSTTCHHHHHHHHHHHHHHSCCSEEEECCSSTTTTHHHHHHHHHTTCCEEEESSCCS
T ss_pred HHHHHHHHHHcCCEEEEECCCCCCCHHHHHHHHHHHHHhCCCCEEEEeCCCHHHHHHHHHHHHHCCCcEEEEecCCC
Confidence 3444555566788887766 4456666667778887777 8888777643 3445566677888999766766554
No 203
>3kke_A LACI family transcriptional regulator; structural genomics, DNA-binding, transcription regulation, PSI-2; 2.20A {Mycobacterium smegmatis str}
Probab=76.56 E-value=19 Score=27.37 Aligned_cols=37 Identities=3% Similarity=-0.089 Sum_probs=14.5
Q ss_pred HhCCCeeEEecCCCCHHHHHHHHHHHhccCceEEEEE
Q psy437 55 AQERINAISYHAGLADKLRNEVQMKWISNKVHVGHWT 91 (184)
Q Consensus 55 ~~~gi~~~~~hg~l~~~~R~~~~~~f~~g~~~vlVaT 91 (184)
.+.|+.+..+..+-+.+.-...++.+.+..+..||..
T Consensus 42 ~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiI~~ 78 (303)
T 3kke_A 42 SGHSTDVLLGQIDAPPRGTQQLSRLVSEGRVDGVLLQ 78 (303)
T ss_dssp HHTTCCEEEEECCSTTHHHHHHHHHHHSCSSSEEEEC
T ss_pred HHCCCEEEEEeCCCChHHHHHHHHHHHhCCCcEEEEe
Confidence 3344444433333333333333444444444444333
No 204
>2rgy_A Transcriptional regulator, LACI family; 11011J, NYSGXRC, transctiptional regulator, SUG binding protein, structural genomics, PSI-2; 2.05A {Burkholderia phymatum}
Probab=76.31 E-value=17 Score=27.38 Aligned_cols=15 Identities=20% Similarity=0.129 Sum_probs=8.7
Q ss_pred cHHHHHHHHHhcCCc
Q psy437 96 ECDSVAAALAQERIN 110 (184)
Q Consensus 96 ~~e~~a~gL~~~gi~ 110 (184)
....+++.|-..|.+
T Consensus 115 ~g~~a~~~L~~~G~~ 129 (290)
T 2rgy_A 115 GGELAAATLIEHGHR 129 (290)
T ss_dssp HHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHCCCc
Confidence 445566666555654
No 205
>2l82_A Designed protein OR32; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Artificial gene}
Probab=76.10 E-value=15 Score=24.57 Aligned_cols=48 Identities=15% Similarity=0.165 Sum_probs=35.6
Q ss_pred HHHHHHHHHH---HhCCCeeEEecCCCCHHHHHHHHHHHhccCceEEEEEe
Q psy437 45 KECDSVAAAL---AQERINAISYHAGLADKLRNEVQMKWISNKVHVGHWTV 92 (184)
Q Consensus 45 ~~~e~la~~L---~~~gi~~~~~hg~l~~~~R~~~~~~f~~g~~~vlVaT~ 92 (184)
.+.+++...+ .+.|+.+.+.+.+.+...|.+.++.|++..+.+--.++
T Consensus 87 ddkewikdfieeakergvevfvvynnkdddrrkeaqqefrsdgvdvrtvsd 137 (162)
T 2l82_A 87 DDKEWIKDFIEEAKERGVEVFVVYNNKDDDRRKEAQQEFRSDGVDVRTVSD 137 (162)
T ss_dssp CCHHHHHHHHHHHHHTTCEEEEEEECSCHHHHHHHHHHHCCSSCEEEEESS
T ss_pred CcHHHHHHHHHHHHhcCcEEEEEecCCCchhHHHHHHHhhhcCceeeecCC
Confidence 3344554444 56799988888888999999999999998877544433
No 206
>1x60_A Sporulation-specific N-acetylmuramoyl-L-alanine amidase; CWLC, CWLCR, peptidoglycan, cell WALL lytic amidase, tandem repeats, hydrolase; NMR {Bacillus subtilis}
Probab=75.83 E-value=8.8 Score=23.34 Aligned_cols=60 Identities=17% Similarity=0.157 Sum_probs=44.0
Q ss_pred eccHHHHHHHHHHHHhCCCeeEEecCCCCHHHHHHHHHHHhccCceEEEEE-eecccHHHHHHHHHhcCCcEEEee
Q psy437 41 CLTRKECDSVAAALAQERINAISYHAGLADKLRNEVQMKWISNKVHVGHWT-VVSKECDSVAAALAQERINAISYH 115 (184)
Q Consensus 41 ~~tr~~~e~la~~L~~~gi~~~~~hg~l~~~~R~~~~~~f~~g~~~vlVaT-~tr~~~e~~a~gL~~~gi~~~vih 115 (184)
..++..|+.+...|...|+++....+ .+-.+|.|.- .++.+++.+...|...|+++.++.
T Consensus 17 f~~~~~A~~~~~~L~~~g~~~~i~~~---------------~~~yRV~vGpf~~~~~A~~~~~~L~~~g~~~~iv~ 77 (79)
T 1x60_A 17 FKVKANADSLASNAEAKGFDSIVLLK---------------DGLYKVQIGAFSSKDNADTLAARAKNAGFDAIVIL 77 (79)
T ss_dssp ESCHHHHHHHHHHHHHHTCCEEEEEE---------------TTEEEEEEEEESSHHHHHHHHHHHHHHTSCCEEEE
T ss_pred cCCHHHHHHHHHHHHhCCCCeEEecC---------------CcEEEEEECCcCCHHHHHHHHHHHHHcCCceEEEe
Confidence 46889999999999988988765322 1235677765 356788888899988888866653
No 207
>2ark_A Flavodoxin; FMN, structural genomics, PSI, structure initiative, midwest center for structural genomic electron transport; 2.40A {Aquifex aeolicus} SCOP: c.23.5.8
Probab=75.73 E-value=17 Score=25.87 Aligned_cols=46 Identities=15% Similarity=0.031 Sum_probs=27.0
Q ss_pred ccHHHHHHHHHHHHh-CCCeeEEecCCCCHHHHHHHHHHHhccCceEEEEEeec
Q psy437 42 LTRKECDSVAAALAQ-ERINAISYHAGLADKLRNEVQMKWISNKVHVGHWTVVS 94 (184)
Q Consensus 42 ~tr~~~e~la~~L~~-~gi~~~~~hg~l~~~~R~~~~~~f~~g~~~vlVaT~tr 94 (184)
+|+..++.+++.|.+ .|+.+..++-.-.. .+.+...+ -++++|++.
T Consensus 17 nT~~~a~~i~~~l~~~~g~~v~~~~l~~~~------~~~l~~aD-~ii~gsP~y 63 (188)
T 2ark_A 17 NTKKMAELVAEGARSLEGTEVRLKHVDEAT------KEDVLWAD-GLAVGSPTN 63 (188)
T ss_dssp HHHHHHHHHHHHHHTSTTEEEEEEETTTCC------HHHHHHCS-EEEEEEECB
T ss_pred HHHHHHHHHHHHHhhcCCCeEEEEEhhhCC------HHHHHhCC-EEEEEeCcc
Confidence 456677777888877 78777666532211 23333333 477777754
No 208
>3k4h_A Putative transcriptional regulator; structural genomics, protein structure INI NEW YORK structural genomix research consortium; HET: MAL; 2.80A {Bacillus cytotoxicus nvh 391-98}
Probab=75.70 E-value=16 Score=27.35 Aligned_cols=15 Identities=20% Similarity=0.051 Sum_probs=7.4
Q ss_pred cHHHHHHHHHhcCCc
Q psy437 96 ECDSVAAALAQERIN 110 (184)
Q Consensus 96 ~~e~~a~gL~~~gi~ 110 (184)
....+++.|-..|.+
T Consensus 118 ~g~~a~~~L~~~G~~ 132 (292)
T 3k4h_A 118 AAREVAEYLISLGHK 132 (292)
T ss_dssp HHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHCCCc
Confidence 344555555545544
No 209
>2iks_A DNA-binding transcriptional dual regulator; escherichia coli structural genomics, PSI-2, protein structure initiative; 1.85A {Escherichia coli}
Probab=75.56 E-value=14 Score=27.89 Aligned_cols=15 Identities=13% Similarity=0.200 Sum_probs=7.4
Q ss_pred cHHHHHHHHHhcCCc
Q psy437 96 ECDSVAAALAQERIN 110 (184)
Q Consensus 96 ~~e~~a~gL~~~gi~ 110 (184)
....+++.|-..|.+
T Consensus 125 ~~~~a~~~L~~~G~~ 139 (293)
T 2iks_A 125 DAEMLAEELRKFPAE 139 (293)
T ss_dssp HHHHHHHHHHTSCCS
T ss_pred HHHHHHHHHHHCCCC
Confidence 344455555544543
No 210
>1u6t_A SH3 domain-binding glutamic acid-rich-like protein; SH3-binding, glutaredoxin, thioredoxin fold, crystallography, protein binding; HET: CIT; 1.90A {Homo sapiens} PDB: 1wry_A
Probab=75.46 E-value=5 Score=27.28 Aligned_cols=41 Identities=12% Similarity=0.061 Sum_probs=35.1
Q ss_pred EeccHHHHHHHHHHHHhCCCeeEEecCCCCHHHHHHHHHHH
Q psy437 40 YCLTRKECDSVAAALAQERINAISYHAGLADKLRNEVQMKW 80 (184)
Q Consensus 40 f~~tr~~~e~la~~L~~~gi~~~~~hg~l~~~~R~~~~~~f 80 (184)
||.+++.|..+...|...|+....+.-.++++.|....+..
T Consensus 12 ~c~~kk~c~~aK~lL~~kgV~feEidI~~d~~~r~eM~~~~ 52 (121)
T 1u6t_A 12 STAIKKKQQDVLGFLEANKIGFEEKDIAANEENRKWMRENV 52 (121)
T ss_dssp CHHHHHHHHHHHHHHHHTTCCEEEEECTTCHHHHHHHHHHS
T ss_pred CccchHHHHHHHHHHHHCCCceEEEECCCCHHHHHHHHHhc
Confidence 45567788999999999999988888888899998888887
No 211
>2l69_A Rossmann 2X3 fold protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=75.13 E-value=14 Score=23.91 Aligned_cols=92 Identities=3% Similarity=-0.084 Sum_probs=59.7
Q ss_pred EEeccHHHHHHHHHHHHhCCCeeEEecCCCCHHHHHHHHHHHhc--cCceEEEEEeecccHHHHHHHHHhcCCcEEEeeC
Q psy437 39 VYCLTRKECDSVAAALAQERINAISYHAGLADKLRNEVQMKWIS--NKVHVGHWTVVSKECDSVAAALAQERINAISYHA 116 (184)
Q Consensus 39 If~~tr~~~e~la~~L~~~gi~~~~~hg~l~~~~R~~~~~~f~~--g~~~vlVaT~tr~~~e~~a~gL~~~gi~~~vih~ 116 (184)
||....++.......+.+.|+++.... ++++-...++.+.. +..-++|..+.+..+|...+....-|..++++-|
T Consensus 7 vfstdeetlrkfkdiikkngfkvrtvr---spqelkdsieelvkkynativvvvvddkewaekairfvkslgaqvliiiy 83 (134)
T 2l69_A 7 VFSTDEETLRKFKDIIKKNGFKVRTVR---SPQELKDSIEELVKKYNATIVVVVVDDKEWAEKAIRFVKSLGAQVLIIIY 83 (134)
T ss_dssp ECCCCHHHHHHHHHHHHHTTCEEEEEC---SHHHHHHHHHHHTTCCCCEEEEEECSSHHHHHHHHHHHHHHCCCCEEEEE
T ss_pred EEeCCHHHHHHHHHHHHhcCceEEEec---CHHHHHHHHHHHHHHhCCeEEEEEEccHHHHHHHHHHHHhcCCeEEEEEE
Confidence 344444455566667778888877664 34444444444443 2334566777788888888888888888888999
Q ss_pred CCChHHH-HHHHHHhhCC
Q psy437 117 GLADKLR-NEVQMKWISN 133 (184)
Q Consensus 117 ~~p~~~r-~~~~~~f~~~ 133 (184)
+..+..- ++..+..+.|
T Consensus 84 dqdqnrleefsrevrrrg 101 (134)
T 2l69_A 84 DQDQNRLEEFSREVRRRG 101 (134)
T ss_dssp CSCHHHHHHHHHHHHHTT
T ss_pred eCchhHHHHHHHHHHhcC
Confidence 9888654 4444445555
No 212
>1vee_A Proline-rich protein family; hypothetical protein, structural genomics, rhodanese domain, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} PDB: 2dcq_A
Probab=74.95 E-value=2 Score=29.27 Aligned_cols=37 Identities=14% Similarity=0.088 Sum_probs=30.7
Q ss_pred CCCcEEEEeccHHHHHHHHHHHHhCCCe-eEEecCCCC
Q psy437 33 SGQSGIVYCLTRKECDSVAAALAQERIN-AISYHAGLA 69 (184)
Q Consensus 33 ~~~~~IIf~~tr~~~e~la~~L~~~gi~-~~~~hg~l~ 69 (184)
+..+.|+||.+=..+...+..|...|+. +..+.||+.
T Consensus 73 ~~~~ivv~C~sG~RS~~aa~~L~~~G~~~v~~l~GG~~ 110 (134)
T 1vee_A 73 ENTTLYILDKFDGNSELVAELVALNGFKSAYAIKDGAE 110 (134)
T ss_dssp GGCEEEEECSSSTTHHHHHHHHHHHTCSEEEECTTTTT
T ss_pred CCCEEEEEeCCCCcHHHHHHHHHHcCCcceEEecCCcc
Confidence 3467889999987788889999999995 778899984
No 213
>1wik_A Thioredoxin-like protein 2; picot homology 2 domain, picot protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: c.47.1.1
Probab=74.74 E-value=14 Score=23.77 Aligned_cols=54 Identities=6% Similarity=-0.047 Sum_probs=37.1
Q ss_pred CcEEEEec------cHHHHHHHHHHHHhCCCeeEEecCCCCHHHHHHHHHHHhccCceEE
Q psy437 35 QSGIVYCL------TRKECDSVAAALAQERINAISYHAGLADKLRNEVQMKWISNKVHVG 88 (184)
Q Consensus 35 ~~~IIf~~------tr~~~e~la~~L~~~gi~~~~~hg~l~~~~R~~~~~~f~~g~~~vl 88 (184)
.+.+||+. ++..|..+...|.+.|+....+.-..+++.+..+.+..-...+++|
T Consensus 15 ~~vvvy~~g~~~~~~Cp~C~~ak~~L~~~~i~~~~vdi~~~~~~~~~l~~~~g~~~vP~i 74 (109)
T 1wik_A 15 ASVMLFMKGNKQEAKCGFSKQILEILNSTGVEYETFDILEDEEVRQGLKTFSNWPTYPQL 74 (109)
T ss_dssp SSEEEEESSTTTCCCSSTHHHHHHHHHHTCSCEEEEESSSCHHHHHHHHHHHSCCSSCEE
T ss_pred CCEEEEEecCCCCCCCchHHHHHHHHHHcCCCeEEEECCCCHHHHHHHHHHhCCCCCCEE
Confidence 56788865 6778999999999999988777766665555555444333345543
No 214
>2amj_A Modulator of drug activity B; oxidoreductase, menadione, DT-diaphorase, montreal-kingston structural genomics initiative, BSGI; 1.80A {Escherichia coli} PDB: 2b3d_A*
Probab=74.18 E-value=11 Score=27.59 Aligned_cols=64 Identities=9% Similarity=-0.010 Sum_probs=39.4
Q ss_pred HHHHHHHHHHhCCCeeEEecCCCCHHHHHHHHHHHhccCceEEEEEeecccHHHHHHHHHhcCCcEEEeeCCCChHHHHH
Q psy437 46 ECDSVAAALAQERINAISYHAGLADKLRNEVQMKWISNKVHVGHWTVVSKECDSVAAALAQERINAISYHAGLADKLRNE 125 (184)
Q Consensus 46 ~~e~la~~L~~~gi~~~~~hg~l~~~~R~~~~~~f~~g~~~vlVaT~tr~~~e~~a~gL~~~gi~~~vih~~~p~~~r~~ 125 (184)
.++.+++.+.+.|..+..+.=.- ..+-...++++..-+. ||++|| +|++++|...+.+
T Consensus 35 l~~~~~~~~~~~g~~v~~~dL~~-~~d~~~~~~~l~~AD~-iV~~~P--------------------~y~~s~pa~LK~~ 92 (204)
T 2amj_A 35 LTEVADGTLRDLGHDVRIVRADS-DYDVKAEVQNFLWADV-VIWQMP--------------------GWWMGAPWTVKKY 92 (204)
T ss_dssp HHHHHHHHHHHTTCEEEEEESSS-CCCHHHHHHHHHHCSE-EEEEEE--------------------CBTTBCCHHHHHH
T ss_pred HHHHHHHHHHHcCCEEEEEeCCc-cccHHHHHHHHHhCCE-EEEECC--------------------ccccCCCHHHHHH
Confidence 34445555555676665544221 1223445566655443 566666 6899999999999
Q ss_pred HHHHhh
Q psy437 126 VQMKWI 131 (184)
Q Consensus 126 ~~~~f~ 131 (184)
+-+.+.
T Consensus 93 iDrv~~ 98 (204)
T 2amj_A 93 IDDVFT 98 (204)
T ss_dssp HHHHHH
T ss_pred HHHHhh
Confidence 998743
No 215
>2vk2_A YTFQ, ABC transporter periplasmic-binding protein YTFQ; transport protein, galactofuranose; HET: GZL; 1.20A {Escherichia coli}
Probab=74.13 E-value=24 Score=26.75 Aligned_cols=72 Identities=7% Similarity=0.034 Sum_probs=45.1
Q ss_pred HHHHHHHHhCCCeeEEecCCCCHHHHHHHHHHHhccCceEEEEEeeccc-HHHHHHHHHhcCCcEEEeeCCCC
Q psy437 48 DSVAAALAQERINAISYHAGLADKLRNEVQMKWISNKVHVGHWTVVSKE-CDSVAAALAQERINAISYHAGLA 119 (184)
Q Consensus 48 e~la~~L~~~gi~~~~~hg~l~~~~R~~~~~~f~~g~~~vlVaT~tr~~-~e~~a~gL~~~gi~~~vih~~~p 119 (184)
.-+.+.+.+.|+.+..+.+.-+.+.-...++.+....+..||..+.... .+.....+...|++++++....+
T Consensus 22 ~gi~~~a~~~g~~l~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~~~~~~~~~~~iPvV~~~~~~~ 94 (306)
T 2vk2_A 22 NVAKSEAEKRGITLKIADGQQKQENQIKAVRSFVAQGVDAIFIAPVVATGWEPVLKEAKDAEIPVFLLDRSID 94 (306)
T ss_dssp HHHHHHHHHHTCEEEEEECTTCHHHHHHHHHHHHHHTCSEEEECCSSSSSCHHHHHHHHHTTCCEEEESSCCC
T ss_pred HHHHHHHHHcCCEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEeCCChhhHHHHHHHHHHCCCCEEEecCCCC
Confidence 3344556667888777666555555556677777777877776665432 23444556778888666655444
No 216
>3rot_A ABC sugar transporter, periplasmic sugar binding; nysgrc, PSI-biology, structural genomics; 1.91A {Legionella pneumophila subsp}
Probab=73.19 E-value=26 Score=26.40 Aligned_cols=73 Identities=8% Similarity=-0.067 Sum_probs=49.4
Q ss_pred HHHHHHHHhCCCeeEEecCC--CCHHHHHHHHHHHhccCceEEEEEeecc-cHHHHHHHHHhcCCcEEEeeCCCCh
Q psy437 48 DSVAAALAQERINAISYHAG--LADKLRNEVQMKWISNKVHVGHWTVVSK-ECDSVAAALAQERINAISYHAGLAD 120 (184)
Q Consensus 48 e~la~~L~~~gi~~~~~hg~--l~~~~R~~~~~~f~~g~~~vlVaT~tr~-~~e~~a~gL~~~gi~~~vih~~~p~ 120 (184)
.-+.+.+.+.|+.+..+.+. -+.+.-...++.+....+..||.++... ..+.....+...|++++.+....+.
T Consensus 23 ~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiii~~~~~~~~~~~~~~~~~~giPvV~~~~~~~~ 98 (297)
T 3rot_A 23 QGAKKAAEELKVDLQILAPPGANDVPKQVQFIESALATYPSGIATTIPSDTAFSKSLQRANKLNIPVIAVDTRPKD 98 (297)
T ss_dssp HHHHHHHHHHTCEEEEECCSSSCCHHHHHHHHHHHHHTCCSEEEECCCCSSTTHHHHHHHHHHTCCEEEESCCCSC
T ss_pred HHHHHHHHHhCcEEEEECCCCcCCHHHHHHHHHHHHHcCCCEEEEeCCCHHHHHHHHHHHHHCCCCEEEEcCCCcc
Confidence 33444555678888877754 4666666788888888888777666543 2345566777889997777766654
No 217
>1uar_A Rhodanese; sulfurtransferase, riken structural genomics/PROT initiative, RSGI, structural genomics, transferase; 1.70A {Thermus thermophilus} SCOP: c.46.1.2 c.46.1.2
Probab=72.56 E-value=4.3 Score=31.13 Aligned_cols=48 Identities=15% Similarity=0.196 Sum_probs=35.4
Q ss_pred HHHHHHHHh--hcCCCcEEEEeccHHHHHHHHHHHH-hCCC-eeEEecCCCC
Q psy437 22 KEVISLIKA--KYSGQSGIVYCLTRKECDSVAAALA-QERI-NAISYHAGLA 69 (184)
Q Consensus 22 ~~L~~~l~~--~~~~~~~IIf~~tr~~~e~la~~L~-~~gi-~~~~~hg~l~ 69 (184)
+.|...+.+ ..+..+.|+||.+-..+...+..|. ..|+ ++..|.||+.
T Consensus 219 ~~l~~~~~~~g~~~~~~ivvyC~~G~rs~~a~~~L~~~~G~~~v~~l~GG~~ 270 (285)
T 1uar_A 219 EELRALYEPLGITKDKDIVVYCRIAERSSHSWFVLKYLLGYPHVKNYDGSWT 270 (285)
T ss_dssp HHHHHHHGGGTCCTTSEEEEECSSHHHHHHHHHHHHTTSCCSCEEEESSHHH
T ss_pred HHHHHHHHHcCCCCCCCEEEECCchHHHHHHHHHHHHHcCCCCcceeCchHH
Confidence 445555543 1245667889999888888899998 8999 5888999863
No 218
>3l21_A DHDPS, dihydrodipicolinate synthase; DAPA, dimer, RV2753C, lysine biosynthesis, amino-acid biosynthesis, diaminopimelate biosynthesis; HET: KPI CME; 2.10A {Mycobacterium tuberculosis} SCOP: c.1.10.1 PDB: 1xxx_A
Probab=71.77 E-value=34 Score=26.74 Aligned_cols=95 Identities=11% Similarity=0.017 Sum_probs=60.4
Q ss_pred HHHHHHHHHHhCCCeeEEecC------CCCHHHHHHHHHHHhc---cCceEEEEEeec--ccHHHHHHHHHhcCCcEEEe
Q psy437 46 ECDSVAAALAQERINAISYHA------GLADKLRNEVQMKWIS---NKVHVGHWTVVS--KECDSVAAALAQERINAISY 114 (184)
Q Consensus 46 ~~e~la~~L~~~gi~~~~~hg------~l~~~~R~~~~~~f~~---g~~~vlVaT~tr--~~~e~~a~gL~~~gi~~~vi 114 (184)
..+.+.++|.+.|+.-.+.-| .|+.+||.++++.+.+ |+++||+.|.+- .++-.+++.....|.++..+
T Consensus 37 ~l~~lv~~li~~Gv~gi~v~GttGE~~~Lt~~Er~~v~~~~~~~~~grvpviaGvg~~~t~~ai~la~~a~~~Gadavlv 116 (304)
T 3l21_A 37 TAARLANHLVDQGCDGLVVSGTTGESPTTTDGEKIELLRAVLEAVGDRARVIAGAGTYDTAHSIRLAKACAAEGAHGLLV 116 (304)
T ss_dssp HHHHHHHHHHHTTCSEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTTSEEEEECCCSCHHHHHHHHHHHHHHTCSEEEE
T ss_pred HHHHHHHHHHHcCCCEEEeCccccchhhCCHHHHHHHHHHHHHHhCCCCeEEEeCCCCCHHHHHHHHHHHHHcCCCEEEE
Confidence 345556666666766555554 3678999999888764 788999887543 45555667777778885332
Q ss_pred ---eCCCCh--HHHHHHHHHhhCCCceEEEE
Q psy437 115 ---HAGLAD--KLRNEVQMKWISNKVHLYNV 140 (184)
Q Consensus 115 ---h~~~p~--~~r~~~~~~f~~~~~~v~va 140 (184)
.|..|. ....|.......-.++|++.
T Consensus 117 ~~P~y~~~s~~~l~~~f~~va~a~~lPiilY 147 (304)
T 3l21_A 117 VTPYYSKPPQRGLQAHFTAVADATELPMLLY 147 (304)
T ss_dssp ECCCSSCCCHHHHHHHHHHHHTSCSSCEEEE
T ss_pred CCCCCCCCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 233332 33455555566667888876
No 219
>2fep_A Catabolite control protein A; CCPA, transcriptional regulator; HET: SEP; 2.45A {Bacillus subtilis} PDB: 2nzu_G* 1sxh_A 1sxi_A 1sxg_A* 2nzv_G* 2oen_G*
Probab=71.67 E-value=29 Score=26.00 Aligned_cols=19 Identities=11% Similarity=0.090 Sum_probs=11.5
Q ss_pred ccHHHHHHHHHhcCCcEEE
Q psy437 95 KECDSVAAALAQERINAIS 113 (184)
Q Consensus 95 ~~~e~~a~gL~~~gi~~~v 113 (184)
.....+++.|-..|.+-.+
T Consensus 119 ~~g~~a~~~L~~~G~~~I~ 137 (289)
T 2fep_A 119 QAIYDAVKLLVDKGHTDIA 137 (289)
T ss_dssp HHHHHHHHHHHHTTCSSEE
T ss_pred HHHHHHHHHHHHCCCCeEE
Confidence 4566677777666655333
No 220
>3bil_A Probable LACI-family transcriptional regulator; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Corynebacterium glutamicum atcc 13032}
Probab=71.41 E-value=32 Score=26.79 Aligned_cols=70 Identities=7% Similarity=-0.028 Sum_probs=36.4
Q ss_pred HHHHHHHHhCCCeeEEecCCCCHHHHHHHHHHHhccCceEEEEEeecccHHHHHHHHHhcCCcEEEeeCCC
Q psy437 48 DSVAAALAQERINAISYHAGLADKLRNEVQMKWISNKVHVGHWTVVSKECDSVAAALAQERINAISYHAGL 118 (184)
Q Consensus 48 e~la~~L~~~gi~~~~~hg~l~~~~R~~~~~~f~~g~~~vlVaT~tr~~~e~~a~gL~~~gi~~~vih~~~ 118 (184)
+-+.+.+.+.|+.+..+..+-+.+.-...++.+....+..||..+.... +.....|...|++++++....
T Consensus 86 ~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~-~~~~~~l~~~~iPvV~i~~~~ 155 (348)
T 3bil_A 86 TEIQSTASKAGLATIITNSNEDATTMSGSLEFLTSHGVDGIICVPNEEC-ANQLEDLQKQGMPVVLVDREL 155 (348)
T ss_dssp HHHHHHHHHTTCCEEEEECTTCHHHHHHHHHHHHHTTCSCEEECCCGGG-HHHHHHHHHC-CCEEEESSCC
T ss_pred HHHHHHHHHcCCEEEEEeCCCCHHHHHHHHHHHHhCCCCEEEEeCCCCC-hHHHHHHHhCCCCEEEEcccC
Confidence 3344455566777666555444444445566666666666655544322 223344555677755554443
No 221
>3hcw_A Maltose operon transcriptional repressor; RNA-binding, PSI-2, NYSGXRC, STRU genomics, protein structure initiative; 2.20A {Staphylococcus aureus subsp}
Probab=71.24 E-value=23 Score=26.71 Aligned_cols=19 Identities=0% Similarity=0.218 Sum_probs=10.7
Q ss_pred cccHHHHHHHHHhcCCcEE
Q psy437 94 SKECDSVAAALAQERINAI 112 (184)
Q Consensus 94 r~~~e~~a~gL~~~gi~~~ 112 (184)
+.....+++.|-..|.+-.
T Consensus 116 ~~~~~~a~~~L~~~G~~~I 134 (295)
T 3hcw_A 116 ILASENLTRHVIEQGVDEL 134 (295)
T ss_dssp HHHHHHHHHHHHHHCCSEE
T ss_pred HHHHHHHHHHHHHcCCccE
Confidence 3445566666666666533
No 222
>1urh_A 3-mercaptopyruvate sulfurtransferase; rhodanese; 2.8A {Escherichia coli} SCOP: c.46.1.2 c.46.1.2
Probab=70.50 E-value=3.5 Score=31.59 Aligned_cols=48 Identities=19% Similarity=0.194 Sum_probs=36.4
Q ss_pred HHHHHHHhh--cCCCcEEEEeccHHHHHHHHHHHHhCCCe-eEEecCCCCH
Q psy437 23 EVISLIKAK--YSGQSGIVYCLTRKECDSVAAALAQERIN-AISYHAGLAD 70 (184)
Q Consensus 23 ~L~~~l~~~--~~~~~~IIf~~tr~~~e~la~~L~~~gi~-~~~~hg~l~~ 70 (184)
.|...+... .+..+.|+||.+-..+...+..|...|+. +..|.||+..
T Consensus 217 ~l~~~~~~~~~~~~~~ivv~C~~G~rs~~a~~~L~~~G~~~v~~~~GG~~~ 267 (280)
T 1urh_A 217 ELDAIFFGRGVSYDKPIIVSCGSGVTAAVVLLALATLDVPNVKLYDGAWSE 267 (280)
T ss_dssp HHHHHHHTTTCCSSSCEEEECCSSSTHHHHHHHHHHTTCSSCEEECCSCCC
T ss_pred HHHHHHHHcCCCCCCCEEEECChHHHHHHHHHHHHHcCCCCceeeCChHHH
Confidence 444444321 24567889999988888899999999995 8889999874
No 223
>3d8u_A PURR transcriptional regulator; APC91343.1, vibrio parahaem RIMD 2210633, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.88A {Vibrio parahaemolyticus}
Probab=70.50 E-value=30 Score=25.55 Aligned_cols=16 Identities=6% Similarity=0.117 Sum_probs=10.7
Q ss_pred ccHHHHHHHHHhcCCc
Q psy437 95 KECDSVAAALAQERIN 110 (184)
Q Consensus 95 ~~~e~~a~gL~~~gi~ 110 (184)
.....+++.|-..|.+
T Consensus 106 ~~~~~a~~~L~~~G~~ 121 (275)
T 3d8u_A 106 EVGKACTRHLIEQGFK 121 (275)
T ss_dssp HHHHHHHHHHHTTTCC
T ss_pred HHHHHHHHHHHHCCCC
Confidence 4466777777766765
No 224
>2fvy_A D-galactose-binding periplasmic protein; periplasmic binding protien, hinge, chemotaxis, transport,; HET: BGC; 0.92A {Escherichia coli} SCOP: c.93.1.1 PDB: 1glg_A* 2fw0_A* 2gbp_A* 2qw1_A* 2hph_A* 2ipn_A* 2ipm_A* 2ipl_A* 1gca_A* 1gcg_A 3ga5_A* 3gbp_A*
Probab=70.25 E-value=32 Score=25.83 Aligned_cols=73 Identities=5% Similarity=0.033 Sum_probs=44.7
Q ss_pred HHHHHHHHHhCCC-eeEEecCCCCHHHHHHHHHHHhccCceEEEEEeeccc-HHHHHHHHHhcCCcEEEeeCCCC
Q psy437 47 CDSVAAALAQERI-NAISYHAGLADKLRNEVQMKWISNKVHVGHWTVVSKE-CDSVAAALAQERINAISYHAGLA 119 (184)
Q Consensus 47 ~e~la~~L~~~gi-~~~~~hg~l~~~~R~~~~~~f~~g~~~vlVaT~tr~~-~e~~a~gL~~~gi~~~vih~~~p 119 (184)
..-+.+.+.+.|+ .+..+.+.-+.+.-...++.+.+..+..||.++.... .+.....+...|++++.+....+
T Consensus 21 ~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~vdgiii~~~~~~~~~~~~~~~~~~~iPvV~~~~~~~ 95 (309)
T 2fvy_A 21 RKAIEQDAKAAPDVQLLMNDSQNDQSKQNDQIDVLLAKGVKALAINLVDPAAAGTVIEKARGQNVPVVFFNKEPS 95 (309)
T ss_dssp HHHHHHHHHTCTTEEEEEEECTTCHHHHHHHHHHHHHTTCSEEEECCSSGGGHHHHHHHHHTTTCCEEEESSCCC
T ss_pred HHHHHHHHHhcCCeEEEEecCCCCHHHHHHHHHHHHHcCCCEEEEeCCCcchhHHHHHHHHHCCCcEEEecCCCC
Confidence 3344455556786 7766665555555556677777777777766654332 33445566677888666665544
No 225
>1t1v_A SH3BGRL3, SH3 domain-binding glutamic acid-rich protein-LIK; glutaredoxin, thioredoxin fold, protein 3D-structure, X-RAY crystallography; 1.60A {Mus musculus} SCOP: c.47.1.14 PDB: 1j0f_A 1sj6_A
Probab=68.80 E-value=9.4 Score=23.86 Aligned_cols=45 Identities=16% Similarity=0.035 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHhCCCeeEEecCCCCHHHHHHHHHHHh--ccCceEEE
Q psy437 45 KECDSVAAALAQERINAISYHAGLADKLRNEVQMKWI--SNKVHVGH 89 (184)
Q Consensus 45 ~~~e~la~~L~~~gi~~~~~hg~l~~~~R~~~~~~f~--~g~~~vlV 89 (184)
+.|......|...|++...+.=..+++.|..+.+..- ...++.|+
T Consensus 19 ~~~~~ak~~L~~~~i~~~~~di~~~~~~~~~l~~~~g~~~~~vP~if 65 (93)
T 1t1v_A 19 SQQSEVTRILDGKRIQYQLVDISQDNALRDEMRTLAGNPKATPPQIV 65 (93)
T ss_dssp HHHHHHHHHHHHTTCCCEEEETTSCHHHHHHHHHHTTCTTCCSCEEE
T ss_pred HHHHHHHHHHHHCCCceEEEECCCCHHHHHHHHHHhCCCCCCCCEEE
Confidence 4448888899999998777766666666666655543 22556543
No 226
>3b4u_A Dihydrodipicolinate synthase; structural genomics, PSI-2, MC protein structure initiative, midwest center for structural genomics; 1.20A {Agrobacterium tumefaciens str}
Probab=68.22 E-value=35 Score=26.45 Aligned_cols=94 Identities=7% Similarity=0.013 Sum_probs=57.0
Q ss_pred HHHHHHHHHhCCCeeEEecC------CCCHHHHHHHHHHHhc---cCceEEEEEeec--ccHHHHHHHHHhcCCcEEEe-
Q psy437 47 CDSVAAALAQERINAISYHA------GLADKLRNEVQMKWIS---NKVHVGHWTVVS--KECDSVAAALAQERINAISY- 114 (184)
Q Consensus 47 ~e~la~~L~~~gi~~~~~hg------~l~~~~R~~~~~~f~~---g~~~vlVaT~tr--~~~e~~a~gL~~~gi~~~vi- 114 (184)
.+.+.++|.+.|+.-.+..| .|+.+||.++++...+ |+++||+.|.+- .++-.+++.....|.++..+
T Consensus 26 l~~lv~~li~~Gv~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~~~gr~pviaGvg~~~t~~ai~la~~A~~~Gadavlv~ 105 (294)
T 3b4u_A 26 MIAHARRCLSNGCDSVTLFGTTGEGCSVGSRERQAILSSFIAAGIAPSRIVTGVLVDSIEDAADQSAEALNAGARNILLA 105 (294)
T ss_dssp HHHHHHHHHHTTCSEEEESSTTTTGGGSCHHHHHHHHHHHHHTTCCGGGEEEEECCSSHHHHHHHHHHHHHTTCSEEEEC
T ss_pred HHHHHHHHHHcCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCCCCcEEEeCCCccHHHHHHHHHHHHhcCCCEEEEc
Confidence 44555555556665555444 2778999999988774 678898877653 45555677777788885322
Q ss_pred --eCCC-Ch--HHHHHHHHHhhCC---CceEEEE
Q psy437 115 --HAGL-AD--KLRNEVQMKWISN---KVHLYNV 140 (184)
Q Consensus 115 --h~~~-p~--~~r~~~~~~f~~~---~~~v~va 140 (184)
.|.. |. ....|....-..- .++|++.
T Consensus 106 ~P~y~~~~s~~~l~~~f~~va~a~p~~~lPiilY 139 (294)
T 3b4u_A 106 PPSYFKNVSDDGLFAWFSAVFSKIGKDARDILVY 139 (294)
T ss_dssp CCCSSCSCCHHHHHHHHHHHHHHHCTTCCCEEEE
T ss_pred CCcCCCCCCHHHHHHHHHHHHHhcCCCCCcEEEE
Confidence 2222 22 2334444444433 5777775
No 227
>3tg1_B Dual specificity protein phosphatase 10; kinase/rhodanese-like domain, docking interaction, transfera hydrolase complex; 2.71A {Homo sapiens}
Probab=68.11 E-value=3.2 Score=29.05 Aligned_cols=36 Identities=22% Similarity=0.278 Sum_probs=29.6
Q ss_pred CCcEEEEeccH---------HHHHHHHHHHHhCCCeeEEecCCCC
Q psy437 34 GQSGIVYCLTR---------KECDSVAAALAQERINAISYHAGLA 69 (184)
Q Consensus 34 ~~~~IIf~~tr---------~~~e~la~~L~~~gi~~~~~hg~l~ 69 (184)
..+.|+||.+- ..+..++..|...|+++..+.||+.
T Consensus 93 ~~~IVvyc~~g~~~~~~~~~~~s~~a~~~L~~~G~~v~~L~GG~~ 137 (158)
T 3tg1_B 93 SKEIIVYDENTNEPSRVMPSQPLHIVLESLKREGKEPLVLKGGLS 137 (158)
T ss_dssp TSCEEEECSCCSCTTSCCSSSHHHHHHHHHHTTTCCEEEETTHHH
T ss_pred CCeEEEEECCCCcccccCcchHHHHHHHHHHhCCCcEEEeCCcHH
Confidence 45789999876 3577889999999999989999953
No 228
>1dbq_A Purine repressor; transcription regulation, DNA-binding regulatory protein; 2.20A {Escherichia coli} SCOP: c.93.1.1 PDB: 1jhz_A
Probab=68.04 E-value=35 Score=25.37 Aligned_cols=15 Identities=7% Similarity=-0.148 Sum_probs=7.6
Q ss_pred cHHHHHHHHHhcCCc
Q psy437 96 ECDSVAAALAQERIN 110 (184)
Q Consensus 96 ~~e~~a~gL~~~gi~ 110 (184)
....++..|-..|.+
T Consensus 113 ~~~~~~~~L~~~G~~ 127 (289)
T 1dbq_A 113 GGYMAGRYLIERGHR 127 (289)
T ss_dssp HHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHCCCC
Confidence 344555555555544
No 229
>2vzf_A NADH-dependent FMN reductase; oxidoreductase; 2.50A {Edta-degrading bacterium BNC1} PDB: 2vzh_A* 2vzj_A*
Probab=67.64 E-value=18 Score=25.98 Aligned_cols=51 Identities=18% Similarity=0.027 Sum_probs=27.3
Q ss_pred cHHHHHHHHHH-HHhCCCeeEEecC-CCC----------HHHHHHHHHHHhccCceEEEEEeec
Q psy437 43 TRKECDSVAAA-LAQERINAISYHA-GLA----------DKLRNEVQMKWISNKVHVGHWTVVS 94 (184)
Q Consensus 43 tr~~~e~la~~-L~~~gi~~~~~hg-~l~----------~~~R~~~~~~f~~g~~~vlVaT~tr 94 (184)
|+..++.+++. |.+.|..+..++- .++ +.+-....+++.+.+ -+|++|++-
T Consensus 18 t~~la~~i~~~~l~~~g~~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~i~~aD-~ii~~sP~y 80 (197)
T 2vzf_A 18 TAKLAEYALAHVLARSDSQGRHIHVIDLDPKALLRGDLSNAKLKEAVDATCNAD-GLIVATPIY 80 (197)
T ss_dssp HHHHHHHHHHHHHHHSSEEEEEEEGGGSCHHHHHHTCTTSHHHHHHHHHHHHCS-EEEEEEECB
T ss_pred HHHHHHHHHHHHHHHCCCeEEEEEccccCchhhcccccCcHHHHHHHHHHHHCC-EEEEEeCcc
Confidence 45566667777 7766766655542 121 123334445555433 367777754
No 230
>2x7x_A Sensor protein; transferase, sensor histidine kinase; HET: FRU; 2.64A {Bacteroides thetaiotaomicron}
Probab=67.61 E-value=39 Score=25.83 Aligned_cols=26 Identities=23% Similarity=0.184 Sum_probs=15.5
Q ss_pred ccHHHHHHHHHh--cCCcEEEeeCCCCh
Q psy437 95 KECDSVAAALAQ--ERINAISYHAGLAD 120 (184)
Q Consensus 95 ~~~e~~a~gL~~--~gi~~~vih~~~p~ 120 (184)
.....+++.|-. .|.+-.++=++.+.
T Consensus 112 ~~g~~a~~~L~~~~~G~~~I~~i~~~~~ 139 (325)
T 2x7x_A 112 EIGRSVGNYIASSLKGKGNIVELTGLSG 139 (325)
T ss_dssp HHHHHHHHHHHHHTTTEEEEEEEESCTT
T ss_pred HHHHHHHHHHHHHcCCCceEEEEECCCC
Confidence 345666666655 37775556556555
No 231
>2eg4_A Probable thiosulfate sulfurtransferase; structural genomics, NPPSFA, national Pro protein structural and functional analyses; 1.70A {Thermus thermophilus} PDB: 2eg3_A
Probab=67.15 E-value=4.2 Score=30.23 Aligned_cols=37 Identities=22% Similarity=0.278 Sum_probs=31.3
Q ss_pred CCCcEEEEeccHHHHHHHHHHHHhCCCeeEEecCCCC
Q psy437 33 SGQSGIVYCLTRKECDSVAAALAQERINAISYHAGLA 69 (184)
Q Consensus 33 ~~~~~IIf~~tr~~~e~la~~L~~~gi~~~~~hg~l~ 69 (184)
+..+.|+||.+-..+...+..|...|.++..|.||+.
T Consensus 183 ~~~~iv~~C~~G~rs~~a~~~L~~~G~~v~~~~Gg~~ 219 (230)
T 2eg4_A 183 PGQEVGVYCHSGARSAVAFFVLRSLGVRARNYLGSMH 219 (230)
T ss_dssp TTCEEEEECSSSHHHHHHHHHHHHTTCEEEECSSHHH
T ss_pred CCCCEEEEcCChHHHHHHHHHHHHcCCCcEEecCcHH
Confidence 4567888999999999999999999966888899864
No 232
>2fn9_A Ribose ABC transporter, periplasmic ribose-bindin; RBP, ribose binding protein, periplasmic binding protein, thermophilic proteins; 1.40A {Thermotoga maritima} PDB: 2fn8_A*
Probab=67.09 E-value=36 Score=25.30 Aligned_cols=71 Identities=7% Similarity=-0.016 Sum_probs=41.1
Q ss_pred HHHHHHHHhCCCeeEEecCCCCHHHHHHHHHHHhccCceEEEEEeecc-cHHHHHHHHHhcCCcEEEeeCCC
Q psy437 48 DSVAAALAQERINAISYHAGLADKLRNEVQMKWISNKVHVGHWTVVSK-ECDSVAAALAQERINAISYHAGL 118 (184)
Q Consensus 48 e~la~~L~~~gi~~~~~hg~l~~~~R~~~~~~f~~g~~~vlVaT~tr~-~~e~~a~gL~~~gi~~~vih~~~ 118 (184)
.-+.+.+.+.|+....+..+-+.+.....++.+....+..||..+... ........+...+++++++....
T Consensus 22 ~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~~~~~~~~~~~~~~iPvV~~~~~~ 93 (290)
T 2fn9_A 22 ETAKQRAEQLGYEATIFDSQNDTAKESAHFDAIIAAGYDAIIFNPTDADGSIANVKRAKEAGIPVFCVDRGI 93 (290)
T ss_dssp HHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEECCSCTTTTHHHHHHHHHTTCCEEEESSCC
T ss_pred HHHHHHHHHcCCEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEecCChHHHHHHHHHHHHCCCeEEEEecCC
Confidence 334455556787776666555555555667777777777666655432 22233455666778755555433
No 233
>2rjo_A Twin-arginine translocation pathway signal protei; PSI-2, NYSGXRC, twin arginine translocation pathway signal P structural genomics; HET: GAL; 2.05A {Burkholderia phytofirmans}
Probab=66.72 E-value=37 Score=26.00 Aligned_cols=72 Identities=3% Similarity=-0.113 Sum_probs=42.9
Q ss_pred HHHHHHHHhCCCeeEEecCCCCHHHHHHHHHHHhccC--ceEEEEEeeccc-HHHHHHHHHhcCCcEEEeeCCCC
Q psy437 48 DSVAAALAQERINAISYHAGLADKLRNEVQMKWISNK--VHVGHWTVVSKE-CDSVAAALAQERINAISYHAGLA 119 (184)
Q Consensus 48 e~la~~L~~~gi~~~~~hg~l~~~~R~~~~~~f~~g~--~~vlVaT~tr~~-~e~~a~gL~~~gi~~~vih~~~p 119 (184)
.-+.+.+.+.|+.+..+..+-+.+.....++.+.+.. +..||..+.... .......+...|++++.+....+
T Consensus 25 ~gi~~~a~~~g~~l~~~~~~~~~~~~~~~i~~l~~~~~~vdgiIi~~~~~~~~~~~~~~~~~~~iPvV~~~~~~~ 99 (332)
T 2rjo_A 25 KGAQSFAKSVGLPYVPLTTEGSSEKGIADIRALLQKTGGNLVLNVDPNDSADARVIVEACSKAGAYVTTIWNKPK 99 (332)
T ss_dssp HHHHHHHHHHTCCEEEEECTTCHHHHHHHHHHHHHHTTTCEEEEECCSSHHHHHHHHHHHHHHTCEEEEESCCCT
T ss_pred HHHHHHHHHcCCEEEEecCCCCHHHHHHHHHHHHHCCCCCCEEEEeCCCHHHHHHHHHHHHHCCCeEEEECCCCC
Confidence 3444455566887776666555555556677777766 777776654322 22344556667888655655444
No 234
>2ehh_A DHDPS, dihydrodipicolinate synthase; structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.90A {Aquifex aeolicus}
Probab=66.61 E-value=38 Score=26.26 Aligned_cols=94 Identities=10% Similarity=-0.048 Sum_probs=55.1
Q ss_pred HHHHHHHHHhCCCeeEEecC------CCCHHHHHHHHHHHh---ccCceEEEEEeec--ccHHHHHHHHHhcCCcEEEe-
Q psy437 47 CDSVAAALAQERINAISYHA------GLADKLRNEVQMKWI---SNKVHVGHWTVVS--KECDSVAAALAQERINAISY- 114 (184)
Q Consensus 47 ~e~la~~L~~~gi~~~~~hg------~l~~~~R~~~~~~f~---~g~~~vlVaT~tr--~~~e~~a~gL~~~gi~~~vi- 114 (184)
.+.+.++|.+.|+.-.+.-| .|+.+||.++++... .|+++||+.|.+- .++-.+++.....|.++..+
T Consensus 23 l~~lv~~li~~Gv~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~~~grvpviaGvg~~~t~~ai~la~~A~~~Gadavlv~ 102 (294)
T 2ehh_A 23 LGNLIEFHVDNGTDAILVCGTTGESPTLTFEEHEKVIEFAVKRAAGRIKVIAGTGGNATHEAVHLTAHAKEVGADGALVV 102 (294)
T ss_dssp HHHHHHHHHTTTCCEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTSSEEEEECCCSCHHHHHHHHHHHHHTTCSEEEEE
T ss_pred HHHHHHHHHHCCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCCCCcEEEecCCCCHHHHHHHHHHHHhcCCCEEEEC
Confidence 34444555555555444444 377889998888776 4778888777653 34445566667778874322
Q ss_pred --eCCCCh--HHHHHHHHHhhCCCceEEEE
Q psy437 115 --HAGLAD--KLRNEVQMKWISNKVHLYNV 140 (184)
Q Consensus 115 --h~~~p~--~~r~~~~~~f~~~~~~v~va 140 (184)
.|..|. ....|....-..-.++|++.
T Consensus 103 ~P~y~~~s~~~l~~~f~~va~a~~lPiilY 132 (294)
T 2ehh_A 103 VPYYNKPTQRGLYEHFKTVAQEVDIPIIIY 132 (294)
T ss_dssp CCCSSCCCHHHHHHHHHHHHHHCCSCEEEE
T ss_pred CCCCCCCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 232232 23344444444456777765
No 235
>3flu_A DHDPS, dihydrodipicolinate synthase; TIM barrel, beta-alpha-barrel, amino-acid biosynthesis, diaminopimelate biosynthesis; 2.00A {Neisseria meningitidis serogroup B} SCOP: c.1.10.0
Probab=66.55 E-value=37 Score=26.37 Aligned_cols=94 Identities=9% Similarity=-0.049 Sum_probs=58.5
Q ss_pred HHHHHHHHHhCCCeeEEecC------CCCHHHHHHHHHHHhc---cCceEEEEEeec--ccHHHHHHHHHhcCCcEEEe-
Q psy437 47 CDSVAAALAQERINAISYHA------GLADKLRNEVQMKWIS---NKVHVGHWTVVS--KECDSVAAALAQERINAISY- 114 (184)
Q Consensus 47 ~e~la~~L~~~gi~~~~~hg------~l~~~~R~~~~~~f~~---g~~~vlVaT~tr--~~~e~~a~gL~~~gi~~~vi- 114 (184)
.+.+.++|.+.|+.-.+.-| .|+.+||.++++.+.+ |+++||+.|.+- .++-.+++.....|.++..+
T Consensus 30 l~~lv~~li~~Gv~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~~~grvpviaGvg~~~t~~ai~la~~a~~~Gadavlv~ 109 (297)
T 3flu_A 30 LRDLIDWHIENGTDGIVAVGTTGESATLSVEEHTAVIEAVVKHVAKRVPVIAGTGANNTVEAIALSQAAEKAGADYTLSV 109 (297)
T ss_dssp HHHHHHHHHHTTCCEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTSSCEEEECCCSSHHHHHHHHHHHHHTTCSEEEEE
T ss_pred HHHHHHHHHHcCCCEEEeCccccCcccCCHHHHHHHHHHHHHHhCCCCcEEEeCCCcCHHHHHHHHHHHHHcCCCEEEEC
Confidence 44455555555655444444 2678999999888764 788999887653 45556667777788885322
Q ss_pred --eCCCCh--HHHHHHHHHhhCCCceEEEE
Q psy437 115 --HAGLAD--KLRNEVQMKWISNKVHLYNV 140 (184)
Q Consensus 115 --h~~~p~--~~r~~~~~~f~~~~~~v~va 140 (184)
.|..|. ....|....-..-.++|++.
T Consensus 110 ~P~y~~~~~~~l~~~f~~va~a~~lPiilY 139 (297)
T 3flu_A 110 VPYYNKPSQEGIYQHFKTIAEATSIPMIIY 139 (297)
T ss_dssp CCCSSCCCHHHHHHHHHHHHHHCCSCEEEE
T ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCCEEEE
Confidence 223333 23455555555557888877
No 236
>4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold, oxidoreductase; HET: NAD; 1.75A {Sulfolobus acidocaldarius}
Probab=66.47 E-value=40 Score=25.56 Aligned_cols=68 Identities=9% Similarity=0.071 Sum_probs=46.3
Q ss_pred HHHHHHHhhcCCCcEEEEeccHHHHHHHHHHHHhCCCeeEEecCCCCHHHH-HHHHHHHhc--cCceEEEEEe
Q psy437 23 EVISLIKAKYSGQSGIVYCLTRKECDSVAAALAQERINAISYHAGLADKLR-NEVQMKWIS--NKVHVGHWTV 92 (184)
Q Consensus 23 ~L~~~l~~~~~~~~~IIf~~tr~~~e~la~~L~~~gi~~~~~hg~l~~~~R-~~~~~~f~~--g~~~vlVaT~ 92 (184)
.+...+.+ .+...++...+.+.++.+++.|...|-++..+.++++..+- ....++..+ |.+.+||..-
T Consensus 22 aiA~~la~--~Ga~Vv~~~~~~~~~~~~~~~i~~~g~~~~~~~~Dvt~~~~v~~~~~~~~~~~G~iDiLVNNA 92 (254)
T 4fn4_A 22 AIAKKFAL--NDSIVVAVELLEDRLNQIVQELRGMGKEVLGVKADVSKKKDVEEFVRRTFETYSRIDVLCNNA 92 (254)
T ss_dssp HHHHHHHH--TTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHHHSCCCEEEECC
T ss_pred HHHHHHHH--cCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHcCCCCEEEECC
Confidence 34444544 45566666677888999999999999899999999886432 233333222 7889998644
No 237
>2yan_A Glutaredoxin-3; oxidoreductase; HET: GSH; 1.90A {Homo sapiens}
Probab=66.21 E-value=22 Score=22.54 Aligned_cols=70 Identities=9% Similarity=0.012 Sum_probs=45.9
Q ss_pred CCHHHHHHHHHHHhccCceEEEEE------eecccHHHHHHHHHhcCCcEEEeeCCCChHHHHHHHHHhhCCCceEEE
Q psy437 68 LADKLRNEVQMKWISNKVHVGHWT------VVSKECDSVAAALAQERINAISYHAGLADKLRNEVQMKWISNKVHLYN 139 (184)
Q Consensus 68 l~~~~R~~~~~~f~~g~~~vlVaT------~tr~~~e~~a~gL~~~gi~~~vih~~~p~~~r~~~~~~f~~~~~~v~v 139 (184)
|+++....+.+...++ +|+|++ +.-..|..+...|+..+++...++.+.....+..+.+......++.++
T Consensus 2 ~~~~~~~~~~~~i~~~--~vvvf~~g~~~~~~C~~C~~~~~~L~~~~i~~~~vdi~~~~~~~~~l~~~~g~~~vP~v~ 77 (105)
T 2yan_A 2 MAPKLEERLKVLTNKA--SVMLFMKGNKQEAKCGFSKQILEILNSTGVEYETFDILEDEEVRQGLKAYSNWPTYPQLY 77 (105)
T ss_dssp CCHHHHHHHHHHHTSS--SEEEEESBCSSSBCTTHHHHHHHHHHHHTCCCEEEEGGGCHHHHHHHHHHHTCCSSCEEE
T ss_pred ccHHHHHHHHHHhccC--CEEEEEecCCCCCCCccHHHHHHHHHHCCCCeEEEECCCCHHHHHHHHHHHCCCCCCeEE
Confidence 4444444444444333 577777 455789999999999999877787776666666666555445565553
No 238
>3h11_B Caspase-8; cell death, apoptosis, caspase, alternative splicing, HOST- virus interaction, polymorphism, cytoplasm, disease mutation; 1.90A {Homo sapiens} SCOP: c.17.1.1 PDB: 2k7z_A 1i4e_B 2fun_B 2c2z_B*
Probab=66.18 E-value=23 Score=27.28 Aligned_cols=39 Identities=8% Similarity=0.083 Sum_probs=33.1
Q ss_pred cHHHHHHHHHHHHhCCCeeEEecCCCCHHHHHHHHHHHhc
Q psy437 43 TRKECDSVAAALAQERINAISYHAGLADKLRNEVQMKWIS 82 (184)
Q Consensus 43 tr~~~e~la~~L~~~gi~~~~~hg~l~~~~R~~~~~~f~~ 82 (184)
|..+++.+.+.|+..|+.+.. +-+++.++-.+.+++|..
T Consensus 47 t~~D~~~L~~~f~~LGF~V~~-~~dlt~~em~~~l~~~~~ 85 (271)
T 3h11_B 47 THLDAGALTTTFEELHFEIKP-HDDCTVEQIYEILKIYQL 85 (271)
T ss_dssp HHHHHHHHHHHHHHTTCEEEE-EESCCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHCCCEEEE-EeCCCHHHHHHHHHHHHH
Confidence 557899999999999999764 557999998899999875
No 239
>3kjx_A Transcriptional regulator, LACI family; LACL family, protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.33A {Silicibacter pomeroyi}
Probab=65.75 E-value=44 Score=25.77 Aligned_cols=13 Identities=15% Similarity=0.143 Sum_probs=5.8
Q ss_pred HHHHHHHHHhcCC
Q psy437 97 CDSVAAALAQERI 109 (184)
Q Consensus 97 ~e~~a~gL~~~gi 109 (184)
...+++.|-..|.
T Consensus 173 ~~~a~~~L~~~G~ 185 (344)
T 3kjx_A 173 GREMAQAILKAGY 185 (344)
T ss_dssp HHHHHHHHHHHTC
T ss_pred HHHHHHHHHHCCC
Confidence 4444444444443
No 240
>3a5f_A Dihydrodipicolinate synthase; TIM barrel, enzyme, amino-acid biosynthesis, cytoplasm, diaminopimelate biosynthesis, lyase; HET: KPI; 1.19A {Clostridium botulinum A} PDB: 3bi8_A* 3ird_A*
Probab=65.72 E-value=40 Score=26.05 Aligned_cols=94 Identities=7% Similarity=-0.043 Sum_probs=55.7
Q ss_pred HHHHHHHHHhCCCeeEEecC------CCCHHHHHHHHHHHh---ccCceEEEEEeec--ccHHHHHHHHHhcCCcEEEe-
Q psy437 47 CDSVAAALAQERINAISYHA------GLADKLRNEVQMKWI---SNKVHVGHWTVVS--KECDSVAAALAQERINAISY- 114 (184)
Q Consensus 47 ~e~la~~L~~~gi~~~~~hg------~l~~~~R~~~~~~f~---~g~~~vlVaT~tr--~~~e~~a~gL~~~gi~~~vi- 114 (184)
.+.+.++|.+.|+.-.+..| .|+.+||.++++... .|+++||+.|.+- .++-.+++.....|.++..+
T Consensus 24 l~~lv~~li~~Gv~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~~~gr~pvi~Gvg~~~t~~ai~la~~a~~~Gadavlv~ 103 (291)
T 3a5f_A 24 LSELIEWHIKSKTDAIIVCGTTGEATTMTETERKETIKFVIDKVNKRIPVIAGTGSNNTAASIAMSKWAESIGVDGLLVI 103 (291)
T ss_dssp HHHHHHHHHHTTCCEEEESSGGGTGGGSCHHHHHHHHHHHHHHHTTSSCEEEECCCSSHHHHHHHHHHHHHTTCSEEEEE
T ss_pred HHHHHHHHHHcCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCCCCcEEEeCCcccHHHHHHHHHHHHhcCCCEEEEc
Confidence 44555555556665555544 378899999888876 4788998877653 44555667777788885322
Q ss_pred --eCCCChHHH--HHHHHHhhCCCceEEEE
Q psy437 115 --HAGLADKLR--NEVQMKWISNKVHLYNV 140 (184)
Q Consensus 115 --h~~~p~~~r--~~~~~~f~~~~~~v~va 140 (184)
.|..|.... .|....-..-.++|++.
T Consensus 104 ~P~y~~~s~~~l~~~f~~ia~a~~lPiilY 133 (291)
T 3a5f_A 104 TPYYNKTTQKGLVKHFKAVSDAVSTPIIIY 133 (291)
T ss_dssp CCCSSCCCHHHHHHHC-CTGGGCCSCEEEE
T ss_pred CCCCCCCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 233343222 22223333345777775
No 241
>2a5l_A Trp repressor binding protein WRBA; APC5760, PA0949, protein structure initiative, PSI, structural genomics; 1.70A {Pseudomonas aeruginosa} SCOP: c.23.5.8 PDB: 1zwk_A 1zwl_A*
Probab=65.54 E-value=16 Score=25.95 Aligned_cols=24 Identities=17% Similarity=0.102 Sum_probs=16.8
Q ss_pred ccHHHHHHHHHHHHhCCCeeEEec
Q psy437 42 LTRKECDSVAAALAQERINAISYH 65 (184)
Q Consensus 42 ~tr~~~e~la~~L~~~gi~~~~~h 65 (184)
+|...++.+++.|.+.|..+..++
T Consensus 18 ~T~~la~~i~~~l~~~g~~v~~~~ 41 (200)
T 2a5l_A 18 ATAEMARQIARGVEQGGFEARVRT 41 (200)
T ss_dssp HHHHHHHHHHHHHHHTTCEEEEEB
T ss_pred hHHHHHHHHHHHHhhCCCEEEEEE
Confidence 456677777888877787766554
No 242
>1e0c_A Rhodanese, sulfurtransferase; sulfur metabolism, thiosulfate:cyanide sulfurtransferase; 1.8A {Azotobacter vinelandii} SCOP: c.46.1.2 c.46.1.2 PDB: 1h4k_X 1h4m_X
Probab=65.34 E-value=5.1 Score=30.49 Aligned_cols=37 Identities=8% Similarity=0.051 Sum_probs=30.9
Q ss_pred CCCcEEEEeccHHHHHHHHHHHHhCCCe-eEEecCCCC
Q psy437 33 SGQSGIVYCLTRKECDSVAAALAQERIN-AISYHAGLA 69 (184)
Q Consensus 33 ~~~~~IIf~~tr~~~e~la~~L~~~gi~-~~~~hg~l~ 69 (184)
+..+.|+||.+-..+...+..|...|++ +..|.||+.
T Consensus 222 ~~~~ivvyC~~G~rs~~a~~~L~~~G~~~v~~l~GG~~ 259 (271)
T 1e0c_A 222 PDKEIVTHCQTHHRSGLTYLIAKALGYPRVKGYAGSWG 259 (271)
T ss_dssp TTSEEEEECSSSSHHHHHHHHHHHTTCSCEEECSSHHH
T ss_pred CCCCEEEECCchHHHHHHHHHHHHcCCCCceeeCCcHH
Confidence 4567888999988888999999999995 888888863
No 243
>1fiu_A Type II restriction enzyme ngomi; protein-DNA complex, double helix, restriction endonuclease, restriction-modifiction systems, hydrolase; HET: DNA; 1.60A {Neisseria gonorrhoeae} SCOP: c.52.1.10 PDB: 4abt_A
Probab=65.29 E-value=8.4 Score=29.72 Aligned_cols=57 Identities=16% Similarity=0.092 Sum_probs=40.9
Q ss_pred cCCCCHHHHHHHHHHHhc--cCceEEEEEeecccHHHHHH-HHHhcCCcEEEeeCCCChHH
Q psy437 65 HAGLADKLRNEVQMKWIS--NKVHVGHWTVVSKECDSVAA-ALAQERINAISYHAGLADKL 122 (184)
Q Consensus 65 hg~l~~~~R~~~~~~f~~--g~~~vlVaT~tr~~~e~~a~-gL~~~gi~~~vih~~~p~~~ 122 (184)
.++..|..|.+.+.-.++ |..+=||+..+--...++|. .|.--+|+ +|||+.+|.-.
T Consensus 191 RSDRaQN~RsEaLNLIRnRKGr~PHIvvVTaEPlPSRlaSlAlGTGDID-cVYHfAL~EL~ 250 (286)
T 1fiu_A 191 RSDRAQNARSEGLNLVRNRKGRLPHIVVVTAEPTPSRISSIALGTGEID-CVYHFALYELE 250 (286)
T ss_dssp CTTGGGHHHHHHHHHHHHCSSSCCEEEEEECCCCHHHHHHHHSSSSSCS-EEEETTHHHHH
T ss_pred echhhhhhHHHHHHHHHhccCCCCeEEEEeCCCChHHHHHHHccCCccc-eeeehhHHHHH
Confidence 345568899999888775 67776666665555555553 44667899 99999998743
No 244
>3cpr_A Dihydrodipicolinate synthetase; (beta/alpha)8-barrel fold with A C-terminal alpha-helical segment, amino-acid biosynthesis, cytoplasm; HET: MCL; 2.20A {Corynebacterium glutamicum}
Probab=65.22 E-value=47 Score=25.88 Aligned_cols=95 Identities=11% Similarity=0.014 Sum_probs=60.7
Q ss_pred HHHHHHHHHHhCCCeeEEecC------CCCHHHHHHHHHHHh---ccCceEEEEEeec--ccHHHHHHHHHhcCCcEEEe
Q psy437 46 ECDSVAAALAQERINAISYHA------GLADKLRNEVQMKWI---SNKVHVGHWTVVS--KECDSVAAALAQERINAISY 114 (184)
Q Consensus 46 ~~e~la~~L~~~gi~~~~~hg------~l~~~~R~~~~~~f~---~g~~~vlVaT~tr--~~~e~~a~gL~~~gi~~~vi 114 (184)
..+.+.++|.+.|+.-.+..| .|+.+||.++++... .|+++||+.|.+- .++-.+++.....|.++..+
T Consensus 38 ~l~~lv~~li~~Gv~gl~v~GttGE~~~Ls~~Er~~v~~~~~~~~~grvpviaGvg~~st~~ai~la~~A~~~Gadavlv 117 (304)
T 3cpr_A 38 AGREVAAYLVDKGLDSLVLAGTTGESPTTTAAEKLELLKAVREEVGDRAKLIAGVGTNNTRTSVELAEAAASAGADGLLV 117 (304)
T ss_dssp HHHHHHHHHHHTTCCEEEESSTTTTTTTSCHHHHHHHHHHHHHHHTTTSEEEEECCCSCHHHHHHHHHHHHHTTCSEEEE
T ss_pred HHHHHHHHHHHcCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCCCCcEEecCCCCCHHHHHHHHHHHHhcCCCEEEE
Confidence 355666666677777666655 478899999988877 4788999887653 44555667777788884322
Q ss_pred ---eCCCCh--HHHHHHHHHhhCCCceEEEE
Q psy437 115 ---HAGLAD--KLRNEVQMKWISNKVHLYNV 140 (184)
Q Consensus 115 ---h~~~p~--~~r~~~~~~f~~~~~~v~va 140 (184)
.|..|. ....|.......-.++|++.
T Consensus 118 ~~P~y~~~~~~~l~~~f~~ia~a~~lPiilY 148 (304)
T 3cpr_A 118 VTPYYSKPSQEGLLAHFGAIAAATEVPICLY 148 (304)
T ss_dssp ECCCSSCCCHHHHHHHHHHHHHHCCSCEEEE
T ss_pred CCCCCCCCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 232332 23345555555556787775
No 245
>2q62_A ARSH; alpha/beta, flavoprotein; 1.80A {Sinorhizobium meliloti}
Probab=65.17 E-value=42 Score=25.34 Aligned_cols=66 Identities=9% Similarity=0.010 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHhCCCeeEEecCC-CC--------HHHHHHHHHHHhccCceEEEEEeecccHHHHHHHHHhcCCcEEEe
Q psy437 44 RKECDSVAAALAQERINAISYHAG-LA--------DKLRNEVQMKWISNKVHVGHWTVVSKECDSVAAALAQERINAISY 114 (184)
Q Consensus 44 r~~~e~la~~L~~~gi~~~~~hg~-l~--------~~~R~~~~~~f~~g~~~vlVaT~tr~~~e~~a~gL~~~gi~~~vi 114 (184)
+..++.+++.+.+.|..+..+.-. ++ +..-..+.+++..-+. +|++|+ +|
T Consensus 51 ~~La~~~~~~l~~~g~eve~idL~~~pl~~~d~~~~d~~~~l~~~i~~AD~-iI~~sP--------------------~Y 109 (247)
T 2q62_A 51 RLLAEEARRLLEFFGAEVKVFDPSGLPLPDAAPVSHPKVQELRELSIWSEG-QVWVSP--------------------ER 109 (247)
T ss_dssp HHHHHHHHHHHHHTTCEEEECCCTTCCCTTSSCTTSHHHHHHHHHHHHCSE-EEEEEE--------------------CS
T ss_pred HHHHHHHHHHHhhCCCEEEEEEhhcCCCCcCCCCCCHHHHHHHHHHHHCCE-EEEEeC--------------------CC
Confidence 345666667777678776665421 21 1223344555554332 556665 57
Q ss_pred eCCCChHHHHHHHHHh
Q psy437 115 HAGLADKLRNEVQMKW 130 (184)
Q Consensus 115 h~~~p~~~r~~~~~~f 130 (184)
++++|...++++-+.+
T Consensus 110 n~sipa~LKn~iD~l~ 125 (247)
T 2q62_A 110 HGAMTGIMKAQIDWIP 125 (247)
T ss_dssp SSSCCHHHHHHHHTSC
T ss_pred CCCccHHHHHHHHHhh
Confidence 8888888888887764
No 246
>3gv0_A Transcriptional regulator, LACI family; transcription regulator, PSI-II, structural genomics structure initiative; 2.35A {Agrobacterium tumefaciens str}
Probab=65.02 E-value=29 Score=25.94 Aligned_cols=67 Identities=9% Similarity=-0.112 Sum_probs=33.1
Q ss_pred HHHHHHHHhCCCeeEEecCCCCHHHHHHHHHHHhccCceEE-------------EEEeecccHHHHHHHHHhcCCcEEEe
Q psy437 48 DSVAAALAQERINAISYHAGLADKLRNEVQMKWISNKVHVG-------------HWTVVSKECDSVAAALAQERINAISY 114 (184)
Q Consensus 48 e~la~~L~~~gi~~~~~hg~l~~~~R~~~~~~f~~g~~~vl-------------VaT~tr~~~e~~a~gL~~~gi~~~vi 114 (184)
..+.+.|...++....+.+..... ..++.+....++++ |.++.......+++.|-..|.+-.++
T Consensus 56 ~~~~~~l~~~~vdgiIi~~~~~~~---~~~~~l~~~~iPvV~i~~~~~~~~~~~V~~D~~~~g~~a~~~L~~~G~~~I~~ 132 (288)
T 3gv0_A 56 VPIRYILETGSADGVIISKIEPND---PRVRFMTERNMPFVTHGRSDMGIEHAFHDFDNEAYAYEAVERLAQCGRKRIAV 132 (288)
T ss_dssp HHHHHHHHHTCCSEEEEESCCTTC---HHHHHHHHTTCCEEEESCCCSSCCCEEEEECHHHHHHHHHHHHHHTTCCEEEE
T ss_pred HHHHHHHHcCCccEEEEecCCCCc---HHHHHHhhCCCCEEEECCcCCCCCCcEEEeCcHHHHHHHHHHHHHCCCCeEEE
Confidence 344455555666655554432222 22344443344433 33333445677777887777663333
Q ss_pred eCC
Q psy437 115 HAG 117 (184)
Q Consensus 115 h~~ 117 (184)
=.+
T Consensus 133 i~~ 135 (288)
T 3gv0_A 133 IVP 135 (288)
T ss_dssp ECC
T ss_pred EcC
Confidence 333
No 247
>3e4c_A Caspase-1; zymogen, inflammasome, ICE, IL-1B, innate immunity, apoptosis, hydrolase, protease protease; 2.05A {Homo sapiens}
Probab=64.90 E-value=36 Score=26.66 Aligned_cols=47 Identities=6% Similarity=0.053 Sum_probs=39.8
Q ss_pred CcEEEEecc-----------HHHHHHHHHHHHhCCCeeEEecCCCCHHHHHHHHHHHhc
Q psy437 35 QSGIVYCLT-----------RKECDSVAAALAQERINAISYHAGLADKLRNEVQMKWIS 82 (184)
Q Consensus 35 ~~~IIf~~t-----------r~~~e~la~~L~~~gi~~~~~hg~l~~~~R~~~~~~f~~ 82 (184)
.-+||+++. ..+++.+++.|+..|+.+.. +-+++.++-.+.+++|..
T Consensus 61 r~aLII~N~~f~~l~~R~G~~~Da~~L~~~f~~LGF~V~~-~~dlt~~em~~~l~~f~~ 118 (302)
T 3e4c_A 61 RLALIICNEEFDSIPRRTGAEVDITGMTMLLQNLGYSVDV-KKNLTASDMTTELEAFAH 118 (302)
T ss_dssp CEEEEEECCSCSSSCCCTTHHHHHHHHHHHHHHTTCEEEE-EESCCHHHHHHHHHHHHT
T ss_pred cEEEEEECcCCCCCCCCCCcHHHHHHHHHHHHHCCCEEEE-eeCCCHHHHHHHHHHHHh
Confidence 358999987 67999999999999999764 457999999999999964
No 248
>2yxg_A DHDPS, dihydrodipicolinate synthase; MJ0244, TIM beta/alpha-barrel fold, structural genomics, NPPSFA; 2.20A {Methanocaldococcus jannaschii DSM2661}
Probab=64.80 E-value=43 Score=25.82 Aligned_cols=94 Identities=13% Similarity=0.034 Sum_probs=54.8
Q ss_pred HHHHHHHHHhCCCeeEEecC------CCCHHHHHHHHHHHh---ccCceEEEEEeec--ccHHHHHHHHHhcCCcEEEe-
Q psy437 47 CDSVAAALAQERINAISYHA------GLADKLRNEVQMKWI---SNKVHVGHWTVVS--KECDSVAAALAQERINAISY- 114 (184)
Q Consensus 47 ~e~la~~L~~~gi~~~~~hg------~l~~~~R~~~~~~f~---~g~~~vlVaT~tr--~~~e~~a~gL~~~gi~~~vi- 114 (184)
.+.+.++|.+.|+...+.-| .|+.+||.++++... .|+++||+.|.+- .++-.+++.....|.++..+
T Consensus 23 l~~lv~~li~~Gv~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~~~gr~pviaGvg~~~t~~ai~la~~a~~~Gadavlv~ 102 (289)
T 2yxg_A 23 LEENINFLIENGVSGIVAVGTTGESPTLSHEEHKKVIEKVVDVVNGRVQVIAGAGSNCTEEAIELSVFAEDVGADAVLSI 102 (289)
T ss_dssp HHHHHHHHHHTTCSEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTSSEEEEECCCSSHHHHHHHHHHHHHHTCSEEEEE
T ss_pred HHHHHHHHHHCCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCCCCcEEEeCCCCCHHHHHHHHHHHHhcCCCEEEEC
Confidence 34445555555655544444 277889998888776 4778888777653 34445566667778774322
Q ss_pred --eCCCChH--HHHHHHHHhhCCCceEEEE
Q psy437 115 --HAGLADK--LRNEVQMKWISNKVHLYNV 140 (184)
Q Consensus 115 --h~~~p~~--~r~~~~~~f~~~~~~v~va 140 (184)
.|..|.. ...|....-..-.++|++.
T Consensus 103 ~P~y~~~s~~~l~~~f~~ia~a~~lPiilY 132 (289)
T 2yxg_A 103 TPYYNKPTQEGLRKHFGKVAESINLPIVLY 132 (289)
T ss_dssp CCCSSCCCHHHHHHHHHHHHHHCSSCEEEE
T ss_pred CCCCCCCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 2333322 3344444444456777765
No 249
>2wlr_A Putative thiosulfate sulfurtransferase YNJE; rhodanese domains; HET: EPE; 1.45A {Escherichia coli} PDB: 2wlx_A* 3ipo_A* 3ipp_A
Probab=64.71 E-value=8.8 Score=31.43 Aligned_cols=48 Identities=10% Similarity=0.154 Sum_probs=35.6
Q ss_pred HHHHHHHHhh--cCCCcEEEEeccHHHHHHHHHHHHhCCC-eeEEecCCCC
Q psy437 22 KEVISLIKAK--YSGQSGIVYCLTRKECDSVAAALAQERI-NAISYHAGLA 69 (184)
Q Consensus 22 ~~L~~~l~~~--~~~~~~IIf~~tr~~~e~la~~L~~~gi-~~~~~hg~l~ 69 (184)
+.|.+.+.+. .+..+.|+||.+-..+...+..|...|+ ++..|.||++
T Consensus 189 ~~l~~~~~~~gi~~~~~ivvyC~~G~~a~~~~~~L~~~G~~~v~~l~Gg~~ 239 (423)
T 2wlr_A 189 EQLKAMLAKHGIRHDTTVILYGRDVYAAARVAQIMLYAGVKDVRLLDGGWQ 239 (423)
T ss_dssp HHHHHHHHHTTCCTTSEEEEECSSHHHHHHHHHHHHHHTCSCEEEETTTHH
T ss_pred HHHHHHHHHcCCCCCCeEEEECCCchHHHHHHHHHHHcCCCCeEEECCCHH
Confidence 4445555431 1445688899998889999999999998 4888999864
No 250
>3huu_A Transcription regulator like protein; PSI-II, NYSGXRC, LAC I, STR genomics, protein structure initiative; 1.95A {Staphylococcus haemolyticus}
Probab=64.70 E-value=30 Score=26.14 Aligned_cols=68 Identities=13% Similarity=0.004 Sum_probs=35.7
Q ss_pred HHHHHHhCCCeeEEecCCCCHHHHHHHHHHHhccCceEEEEEeecccHHHHHHHHHhcCCcEEEeeCCC
Q psy437 50 VAAALAQERINAISYHAGLADKLRNEVQMKWISNKVHVGHWTVVSKECDSVAAALAQERINAISYHAGL 118 (184)
Q Consensus 50 la~~L~~~gi~~~~~hg~l~~~~R~~~~~~f~~g~~~vlVaT~tr~~~e~~a~gL~~~gi~~~vih~~~ 118 (184)
+.+.+.+.|+.+..+..+-+.+.-...++.+.+..+..||..++.... .....+...|++++.+....
T Consensus 49 i~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~-~~~~~l~~~~iPvV~i~~~~ 116 (305)
T 3huu_A 49 INQACNVRGYSTRMTVSENSGDLYHEVKTMIQSKSVDGFILLYSLKDD-PIEHLLNEFKVPYLIVGKSL 116 (305)
T ss_dssp HHHHHHHHTCEEEECCCSSHHHHHHHHHHHHHTTCCSEEEESSCBTTC-HHHHHHHHTTCCEEEESCCC
T ss_pred HHHHHHHCCCEEEEEeCCCChHHHHHHHHHHHhCCCCEEEEeCCcCCc-HHHHHHHHcCCCEEEECCCC
Confidence 334444557766665555444444556666666666666655443221 33344556667644444443
No 251
>3c3k_A Alanine racemase; structural genomics, protein structure initiative, NEW YORK research center for structural genomics, nysgxrc; 1.99A {Actinobacillus succinogenes}
Probab=64.54 E-value=41 Score=25.03 Aligned_cols=16 Identities=13% Similarity=0.148 Sum_probs=9.6
Q ss_pred ccHHHHHHHHHhcCCc
Q psy437 95 KECDSVAAALAQERIN 110 (184)
Q Consensus 95 ~~~e~~a~gL~~~gi~ 110 (184)
.....+++.|-..|.+
T Consensus 110 ~~g~~a~~~L~~~G~~ 125 (285)
T 3c3k_A 110 AASEYVVDQLVKSGKK 125 (285)
T ss_dssp HHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHcCCC
Confidence 3455666777666655
No 252
>3daq_A DHDPS, dihydrodipicolinate synthase; lysine biosynthesis, amino-ACI biosynthesis, diaminopimelate biosynthesis, lyase, schiff B; 1.45A {Staphylococcus aureus} SCOP: c.1.10.0 PDB: 3di1_A 3di0_A
Probab=64.51 E-value=37 Score=26.32 Aligned_cols=93 Identities=13% Similarity=0.020 Sum_probs=54.7
Q ss_pred HHHHHHHHhCCCeeEEecC------CCCHHHHHHHHHHHhc---cCceEEEEEee--cccHHHHHHHHHhcCCcEEEe--
Q psy437 48 DSVAAALAQERINAISYHA------GLADKLRNEVQMKWIS---NKVHVGHWTVV--SKECDSVAAALAQERINAISY-- 114 (184)
Q Consensus 48 e~la~~L~~~gi~~~~~hg------~l~~~~R~~~~~~f~~---g~~~vlVaT~t--r~~~e~~a~gL~~~gi~~~vi-- 114 (184)
+.+.++|.+.|+.-.+.-| .|+.+||.++++.+.+ |+++||+.|.+ -.++-.+++.....|.++..+
T Consensus 26 ~~lv~~li~~Gv~gl~v~GttGE~~~Lt~~Er~~v~~~~~~~~~grvpviaGvg~~~t~~ai~la~~a~~~Gadavlv~~ 105 (292)
T 3daq_A 26 KAHVNFLLENNAQAIIVNGTTAESPTLTTDEKELILKTVIDLVDKRVPVIAGTGTNDTEKSIQASIQAKALGADAIMLIT 105 (292)
T ss_dssp HHHHHHHHHTTCCEEEESSGGGTGGGSCHHHHHHHHHHHHHHHTTSSCEEEECCCSCHHHHHHHHHHHHHHTCSEEEEEC
T ss_pred HHHHHHHHHcCCCEEEECccccccccCCHHHHHHHHHHHHHHhCCCCcEEEeCCcccHHHHHHHHHHHHHcCCCEEEECC
Confidence 3444444455554444433 3678999998887764 78899987753 345555666677778774322
Q ss_pred -eCCCChH--HHHHHHHHhhCCCceEEEE
Q psy437 115 -HAGLADK--LRNEVQMKWISNKVHLYNV 140 (184)
Q Consensus 115 -h~~~p~~--~r~~~~~~f~~~~~~v~va 140 (184)
.|..|.. ...|....-..-.++|++.
T Consensus 106 P~y~~~~~~~l~~~f~~ia~a~~lPiilY 134 (292)
T 3daq_A 106 PYYNKTNQRGLVKHFEAIADAVKLPVVLY 134 (292)
T ss_dssp CCSSCCCHHHHHHHHHHHHHHHCSCEEEE
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCEEEE
Confidence 2333432 3344444444446788876
No 253
>3s5o_A 4-hydroxy-2-oxoglutarate aldolase, mitochondrial; beta barrel, schiff base, hydroxyproline metabolis; HET: KPI; 1.97A {Homo sapiens} SCOP: c.1.10.0 PDB: 3s5n_A
Probab=64.37 E-value=37 Score=26.53 Aligned_cols=94 Identities=10% Similarity=-0.064 Sum_probs=58.1
Q ss_pred HHHHHHHHHhCCCeeEEecC------CCCHHHHHHHHHHHhc---cCceEEEEEee--cccHHHHHHHHHhcCCcEEEe-
Q psy437 47 CDSVAAALAQERINAISYHA------GLADKLRNEVQMKWIS---NKVHVGHWTVV--SKECDSVAAALAQERINAISY- 114 (184)
Q Consensus 47 ~e~la~~L~~~gi~~~~~hg------~l~~~~R~~~~~~f~~---g~~~vlVaT~t--r~~~e~~a~gL~~~gi~~~vi- 114 (184)
.+.+.++|.+.|+.-.+.-| .|+.+||.++++...+ |+++||+.|.+ -.++-.+++.....|.++..+
T Consensus 37 l~~lv~~li~~Gv~Gl~v~GtTGE~~~Ls~~Er~~v~~~~~~~~~gr~pviaGvg~~~t~~ai~la~~A~~~Gadavlv~ 116 (307)
T 3s5o_A 37 LEENLHKLGTFPFRGFVVQGSNGEFPFLTSSERLEVVSRVRQAMPKNRLLLAGSGCESTQATVEMTVSMAQVGADAAMVV 116 (307)
T ss_dssp HHHHHHHHTTSCCSEEEESSGGGTGGGSCHHHHHHHHHHHHHTSCTTSEEEEECCCSSHHHHHHHHHHHHHTTCSEEEEE
T ss_pred HHHHHHHHHHcCCCEEEECccccchhhCCHHHHHHHHHHHHHHcCCCCcEEEecCCCCHHHHHHHHHHHHHcCCCEEEEc
Confidence 34444555555555444433 2788999999988774 67888887753 344555667777788885333
Q ss_pred --eCC---CC-hHHHHHHHHHhhCCCceEEEE
Q psy437 115 --HAG---LA-DKLRNEVQMKWISNKVHLYNV 140 (184)
Q Consensus 115 --h~~---~p-~~~r~~~~~~f~~~~~~v~va 140 (184)
.|- ++ .....|....-..-.++|++.
T Consensus 117 ~P~y~~~~~s~~~l~~~f~~ia~a~~lPiilY 148 (307)
T 3s5o_A 117 TPCYYRGRMSSAALIHHYTKVADLSPIPVVLY 148 (307)
T ss_dssp CCCTTGGGCCHHHHHHHHHHHHHHCSSCEEEE
T ss_pred CCCcCCCCCCHHHHHHHHHHHHhhcCCCEEEE
Confidence 122 12 245556666655567888877
No 254
>2wkj_A N-acetylneuraminate lyase; directed evolution, sialic acid mimetics, aldolase, S base, carbohydrate metabolism, N-acetylneuraminic acid LYAS; HET: KPI PYR; 1.45A {Escherichia coli} PDB: 2wnq_A 2xfw_A* 2wpb_A* 2wnz_A* 2ygy_A* 2wo5_A* 2wnn_A* 3lbm_A 3lbc_A 3lcf_A 3lcl_A 3lcg_A 3lch_A 3lci_A 1hl2_A 1fdy_A 1fdz_A 1nal_1 3lcx_A 3lcw_A
Probab=64.09 E-value=39 Score=26.33 Aligned_cols=94 Identities=12% Similarity=-0.025 Sum_probs=56.4
Q ss_pred HHHHHHHHHhCCCeeEEecC------CCCHHHHHHHHHHHh---ccCceEEEEEeec--ccHHHHHHHHHhcCCcEEEe-
Q psy437 47 CDSVAAALAQERINAISYHA------GLADKLRNEVQMKWI---SNKVHVGHWTVVS--KECDSVAAALAQERINAISY- 114 (184)
Q Consensus 47 ~e~la~~L~~~gi~~~~~hg------~l~~~~R~~~~~~f~---~g~~~vlVaT~tr--~~~e~~a~gL~~~gi~~~vi- 114 (184)
.+.+.++|.+.|+.-.+.-| .|+.+||.++++... .|+++||+.|.+- .++-.+++.....|.++..+
T Consensus 34 l~~lv~~li~~Gv~Gl~v~GtTGE~~~Ls~eEr~~v~~~~~~~~~grvpViaGvg~~~t~~ai~la~~A~~~Gadavlv~ 113 (303)
T 2wkj_A 34 LRRLVQFNIQQGIDGLYVGGSTGEAFVQSLSEREQVLEIVAEEAKGKIKLIAHVGCVSTAESQQLAASAKRYGFDAVSAV 113 (303)
T ss_dssp HHHHHHHHHHTTCSEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTTSEEEEECCCSSHHHHHHHHHHHHHHTCSEEEEE
T ss_pred HHHHHHHHHHcCCCEEEECeeccChhhCCHHHHHHHHHHHHHHhCCCCcEEEecCCCCHHHHHHHHHHHHhCCCCEEEec
Confidence 44555666666666555554 377899999888876 4788898877653 34445566667778874322
Q ss_pred --eCCCCh--HHHHHHHHHhhCCC-ceEEEE
Q psy437 115 --HAGLAD--KLRNEVQMKWISNK-VHLYNV 140 (184)
Q Consensus 115 --h~~~p~--~~r~~~~~~f~~~~-~~v~va 140 (184)
.|..|. ....|....-..-. ++|++.
T Consensus 114 ~P~y~~~s~~~l~~~f~~va~a~~~lPiilY 144 (303)
T 2wkj_A 114 TPFYYPFSFEEHCDHYRAIIDSADGLPMVVY 144 (303)
T ss_dssp CCCSSCCCHHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCCCEEEE
Confidence 233332 22344444444334 777775
No 255
>2ohh_A Type A flavoprotein FPRA; beta-lactamase like domain, flavodoxine like domain, oxidore; HET: FMN; 1.70A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 2ohi_A* 2ohj_A*
Probab=64.02 E-value=25 Score=28.03 Aligned_cols=23 Identities=26% Similarity=0.375 Sum_probs=12.7
Q ss_pred cHHHHHHHHHHHHhCCCeeEEec
Q psy437 43 TRKECDSVAAALAQERINAISYH 65 (184)
Q Consensus 43 tr~~~e~la~~L~~~gi~~~~~h 65 (184)
|++.++.+++.|.+.|+.+..+.
T Consensus 270 T~~la~~i~~~l~~~g~~v~~~~ 292 (404)
T 2ohh_A 270 TRKMAHAIAEGAMSEGVDVRVYC 292 (404)
T ss_dssp HHHHHHHHHHHHHTTTCEEEEEE
T ss_pred HHHHHHHHHHHHHhCCCeEEEEE
Confidence 45555566666655565554443
No 256
>3qze_A DHDPS, dihydrodipicolinate synthase; alpha beta barrel, cytoplasmic; 1.59A {Pseudomonas aeruginosa} PDB: 3puo_A* 3noe_A 3ps7_A* 3s8h_A
Probab=63.91 E-value=38 Score=26.60 Aligned_cols=95 Identities=13% Similarity=-0.021 Sum_probs=61.0
Q ss_pred HHHHHHHHHHhCCCeeEEecC------CCCHHHHHHHHHHHh---ccCceEEEEEeec--ccHHHHHHHHHhcCCcEEEe
Q psy437 46 ECDSVAAALAQERINAISYHA------GLADKLRNEVQMKWI---SNKVHVGHWTVVS--KECDSVAAALAQERINAISY 114 (184)
Q Consensus 46 ~~e~la~~L~~~gi~~~~~hg------~l~~~~R~~~~~~f~---~g~~~vlVaT~tr--~~~e~~a~gL~~~gi~~~vi 114 (184)
..+.+.++|.+.|+.-.+.-| .|+.+||.++++.+. .|+++||+.|.+- .++-.+++.....|.++..+
T Consensus 45 ~l~~lv~~li~~Gv~Gl~v~GtTGE~~~Ls~~Er~~v~~~~v~~~~grvpViaGvg~~st~eai~la~~A~~~Gadavlv 124 (314)
T 3qze_A 45 SLAKLVDFHLQEGTNAIVAVGTTGESATLDVEEHIQVIRRVVDQVKGRIPVIAGTGANSTREAVALTEAAKSGGADACLL 124 (314)
T ss_dssp HHHHHHHHHHHHTCCEEEESSGGGTGGGCCHHHHHHHHHHHHHHHTTSSCEEEECCCSSHHHHHHHHHHHHHTTCSEEEE
T ss_pred HHHHHHHHHHHcCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCCCCcEEEeCCCcCHHHHHHHHHHHHHcCCCEEEE
Confidence 345556666666766555544 378899999988876 4788999877653 45555667777788885322
Q ss_pred ---eCCCCh--HHHHHHHHHhhCCCceEEEE
Q psy437 115 ---HAGLAD--KLRNEVQMKWISNKVHLYNV 140 (184)
Q Consensus 115 ---h~~~p~--~~r~~~~~~f~~~~~~v~va 140 (184)
.|..|. ....|..+.-..-.++|++.
T Consensus 125 ~~P~y~~~s~~~l~~~f~~va~a~~lPiilY 155 (314)
T 3qze_A 125 VTPYYNKPTQEGMYQHFRHIAEAVAIPQILY 155 (314)
T ss_dssp ECCCSSCCCHHHHHHHHHHHHHHSCSCEEEE
T ss_pred cCCCCCCCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 233333 33455555555557888887
No 257
>8abp_A L-arabinose-binding protein; binding proteins; HET: GLA GAL; 1.49A {Escherichia coli} SCOP: c.93.1.1 PDB: 7abp_A* 6abp_A* 1abe_A* 1abf_A* 5abp_A* 1bap_A* 1apb_A* 9abp_A* 2wrz_A
Probab=63.84 E-value=44 Score=25.04 Aligned_cols=69 Identities=6% Similarity=-0.118 Sum_probs=46.6
Q ss_pred HHHHHHHHhCCCeeEEecCCCCHHHHHHHHHHHhccCceEEEEEeecc-cHHHHHHHHHhcCCcEEEeeCC
Q psy437 48 DSVAAALAQERINAISYHAGLADKLRNEVQMKWISNKVHVGHWTVVSK-ECDSVAAALAQERINAISYHAG 117 (184)
Q Consensus 48 e~la~~L~~~gi~~~~~hg~l~~~~R~~~~~~f~~g~~~vlVaT~tr~-~~e~~a~gL~~~gi~~~vih~~ 117 (184)
+-+.+.+.+.|+.+..+.+. +.+.....++.+.+.++..||.++... ..+.....+...|+++..+...
T Consensus 22 ~gi~~~a~~~g~~~~~~~~~-~~~~~~~~i~~l~~~~vdgiii~~~~~~~~~~~~~~~~~~~iPvV~~~~~ 91 (306)
T 8abp_A 22 KFADKAGKDLGFEVIKIAVP-DGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQ 91 (306)
T ss_dssp HHHHHHHHHHTEEEEEEECC-SHHHHHHHHHHHHHTTCCEEEEECSCGGGHHHHHHHHHHTTCEEEEESSC
T ss_pred HHHHHHHHHcCCEEEEeCCC-CHHHHHHHHHHHHHcCCCEEEEeCCCchhhHHHHHHHHHCCCcEEEeCCC
Confidence 34445555668888777664 666667788888888888887776543 3344456677889996666633
No 258
>3bbl_A Regulatory protein of LACI family; protein structure initiative II, PSI-II, NYSGXRC, transcript regulator, periplasmic binding protein; 2.35A {Chloroflexus aggregans}
Probab=63.74 E-value=26 Score=26.25 Aligned_cols=59 Identities=3% Similarity=-0.146 Sum_probs=28.7
Q ss_pred HHHHHHHhCCCeeEEecCCCCHHHHHHHHHHHhccCceEE-------------EEEeecccHHHHHHHHHhcCCc
Q psy437 49 SVAAALAQERINAISYHAGLADKLRNEVQMKWISNKVHVG-------------HWTVVSKECDSVAAALAQERIN 110 (184)
Q Consensus 49 ~la~~L~~~gi~~~~~hg~l~~~~R~~~~~~f~~g~~~vl-------------VaT~tr~~~e~~a~gL~~~gi~ 110 (184)
.+.+.|...++....+.+..... ..++.+.+..++++ |.++.......+++.|-..|.+
T Consensus 55 ~~~~~l~~~~vdgiIi~~~~~~~---~~~~~l~~~~iPvV~~~~~~~~~~~~~V~~D~~~~g~~a~~~L~~~G~~ 126 (287)
T 3bbl_A 55 IYRDLIRSGNVDGFVLSSINYND---PRVQFLLKQKFPFVAFGRSNPDWDFAWVDIDGTAGTRQAVEYLIGRGHR 126 (287)
T ss_dssp HHHHHHHTTCCSEEEECSCCTTC---HHHHHHHHTTCCEEEESCCSTTCCCCEEEECHHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHcCCCCEEEEeecCCCc---HHHHHHHhcCCCEEEECCcCCCCCCCEEEeccHHHHHHHHHHHHHCCCC
Confidence 34445555566655554432221 22333433334433 3333334566777777666655
No 259
>3na8_A Putative dihydrodipicolinate synthetase; lyase; HET: MSE; 1.85A {Pseudomonas aeruginosa}
Probab=63.73 E-value=35 Score=26.83 Aligned_cols=96 Identities=11% Similarity=-0.091 Sum_probs=62.1
Q ss_pred HHHHHHHHHHHhCCCeeEEecC------CCCHHHHHHHHHHHh---ccCceEEEEEeec--ccHHHHHHHHHhcCCcEEE
Q psy437 45 KECDSVAAALAQERINAISYHA------GLADKLRNEVQMKWI---SNKVHVGHWTVVS--KECDSVAAALAQERINAIS 113 (184)
Q Consensus 45 ~~~e~la~~L~~~gi~~~~~hg------~l~~~~R~~~~~~f~---~g~~~vlVaT~tr--~~~e~~a~gL~~~gi~~~v 113 (184)
+..+.+.++|.+.|+.-.+.-| .|+.+||.++++.+. .|+++||+.|.+- .++-.+++.....|.++..
T Consensus 45 ~~l~~lv~~li~~Gv~Gi~v~GtTGE~~~Ls~~Er~~v~~~~v~~~~grvpViaGvg~~~t~~ai~la~~A~~~Gadavl 124 (315)
T 3na8_A 45 PALGRSIERLIDGGVHAIAPLGSTGEGAYLSDPEWDEVVDFTLKTVAHRVPTIVSVSDLTTAKTVRRAQFAESLGAEAVM 124 (315)
T ss_dssp HHHHHHHHHHHHTTCSEEECSSGGGTGGGSCHHHHHHHHHHHHHHHTTSSCBEEECCCSSHHHHHHHHHHHHHTTCSEEE
T ss_pred HHHHHHHHHHHHcCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCCCCcEEEecCCCCHHHHHHHHHHHHhcCCCEEE
Confidence 3455666777777776655555 367899999998876 4788999877643 4555666777778888533
Q ss_pred e---eCCCCh--HHHHHHHHHhhCCCceEEEE
Q psy437 114 Y---HAGLAD--KLRNEVQMKWISNKVHLYNV 140 (184)
Q Consensus 114 i---h~~~p~--~~r~~~~~~f~~~~~~v~va 140 (184)
+ .|..|. ....|.......-.++|++.
T Consensus 125 v~~P~y~~~s~~~l~~~f~~va~a~~lPiilY 156 (315)
T 3na8_A 125 VLPISYWKLNEAEVFQHYRAVGEAIGVPVMLY 156 (315)
T ss_dssp ECCCCSSCCCHHHHHHHHHHHHHHCSSCEEEE
T ss_pred ECCCCCCCCCHHHHHHHHHHHHHhCCCcEEEE
Confidence 2 123332 33445555555556788876
No 260
>2o20_A Catabolite control protein A; CCPA, transcriptional regulator, helix-turn-helix, transcrip; 1.90A {Lactococcus lactis}
Probab=63.71 E-value=48 Score=25.43 Aligned_cols=68 Identities=13% Similarity=0.080 Sum_probs=35.3
Q ss_pred HHHHHHHHhCCCeeEEecCCCCHHHHHHHHHHHhccCceEEEEEeecccHHHHHHHHHhcCCcEEEeeC
Q psy437 48 DSVAAALAQERINAISYHAGLADKLRNEVQMKWISNKVHVGHWTVVSKECDSVAAALAQERINAISYHA 116 (184)
Q Consensus 48 e~la~~L~~~gi~~~~~hg~l~~~~R~~~~~~f~~g~~~vlVaT~tr~~~e~~a~gL~~~gi~~~vih~ 116 (184)
.-+.+.+.+.|+....+..+-+.+.-...++.+....+..||..+..... .....+...+++++++..
T Consensus 83 ~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~~-~~~~~l~~~~iPvV~~~~ 150 (332)
T 2o20_A 83 RGVDDIASMYKYNMILANSDNDVEKEEKVLETFLSKQVDGIVYMGSSLDE-KIRTSLKNSRTPVVLVGT 150 (332)
T ss_dssp HHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEECSSCCCH-HHHHHHHHHCCCEEEESC
T ss_pred HHHHHHHHHcCCEEEEEECCCChHHHHHHHHHHHhCCCCEEEEeCCCCCH-HHHHHHHhCCCCEEEEcc
Confidence 33444455567776665555454444455666666666666655432221 223344555666444443
No 261
>2dri_A D-ribose-binding protein; sugar transport; HET: RIP; 1.60A {Escherichia coli} SCOP: c.93.1.1 PDB: 1urp_A* 1ba2_A 1dbp_A* 1drj_A* 1drk_A* 2gx6_A*
Probab=63.68 E-value=42 Score=24.79 Aligned_cols=14 Identities=0% Similarity=-0.232 Sum_probs=5.7
Q ss_pred HHHHHhccCceEEE
Q psy437 76 VQMKWISNKVHVGH 89 (184)
Q Consensus 76 ~~~~f~~g~~~vlV 89 (184)
.++.+....+..||
T Consensus 49 ~i~~l~~~~vdgiI 62 (271)
T 2dri_A 49 NVQDLTVRGTKILL 62 (271)
T ss_dssp HHHHHTTTTEEEEE
T ss_pred HHHHHHHcCCCEEE
Confidence 33444444444333
No 262
>2ioy_A Periplasmic sugar-binding protein; ribose binding protein, thermophilic proteins; HET: RIP; 1.90A {Thermoanaerobacter tengcongensis}
Probab=63.26 E-value=44 Score=24.86 Aligned_cols=26 Identities=15% Similarity=0.167 Sum_probs=13.8
Q ss_pred ccHHHHHHHHHhc--CCcEEEeeCCCCh
Q psy437 95 KECDSVAAALAQE--RINAISYHAGLAD 120 (184)
Q Consensus 95 ~~~e~~a~gL~~~--gi~~~vih~~~p~ 120 (184)
.....+++.|-.. |.+-.++=++.+.
T Consensus 107 ~~g~~a~~~L~~~~gg~~~I~~i~g~~~ 134 (283)
T 2ioy_A 107 KGGEMAAEFIAKALKGKGNVVELEGIPG 134 (283)
T ss_dssp HHHHHHHHHHHHHTTTCEEEEEEECCTT
T ss_pred HHHHHHHHHHHHHcCCCceEEEEECCCC
Confidence 3455556666555 3664445555444
No 263
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=63.05 E-value=22 Score=25.55 Aligned_cols=54 Identities=13% Similarity=0.064 Sum_probs=38.0
Q ss_pred CceEEEEEeecccHHHHHHHHHh-----cCCcEEEeeCCCChHHHHHHHHHhhCCCceEEEE
Q psy437 84 KVHVGHWTVVSKECDSVAAALAQ-----ERINAISYHAGLADKLRNEVQMKWISNKVHLYNV 140 (184)
Q Consensus 84 ~~~vlVaT~tr~~~e~~a~gL~~-----~gi~~~vih~~~p~~~r~~~~~~f~~~~~~v~va 140 (184)
..++||.++++.-++.++..+.. +++++.+++++.+..... +.+..+...|+++
T Consensus 82 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~---~~~~~~~~~i~v~ 140 (220)
T 1t6n_A 82 QVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDE---EVLKKNCPHIVVG 140 (220)
T ss_dssp CCCEEEECSCHHHHHHHHHHHHHHTTTSTTCCEEEESCCSCHHHHH---HHHHHSCCSEEEE
T ss_pred CEEEEEEeCCHHHHHHHHHHHHHHHhhCCCceEEEEeCCCChHHHH---HHHhcCCCCEEEe
Confidence 45899999999877777666643 378888999998865543 2334455677777
No 264
>1uta_A FTSN, MSGA, cell division protein FTSN; bacterial cell division protein, RNP domain, transmembrane, inner membrane, repeat; NMR {Escherichia coli} SCOP: d.58.52.1
Probab=62.43 E-value=16 Score=22.39 Aligned_cols=59 Identities=15% Similarity=0.002 Sum_probs=42.9
Q ss_pred eccHHHHHHHHHHHHhCCCeeEEecCCCCHHHHHHHHHHHhccCceEEEEE-eecccHHHHHHHHHhcCCcEEEe
Q psy437 41 CLTRKECDSVAAALAQERINAISYHAGLADKLRNEVQMKWISNKVHVGHWT-VVSKECDSVAAALAQERINAISY 114 (184)
Q Consensus 41 ~~tr~~~e~la~~L~~~gi~~~~~hg~l~~~~R~~~~~~f~~g~~~vlVaT-~tr~~~e~~a~gL~~~gi~~~vi 114 (184)
..++..|+.+...|...|+++....+ .+-.+|.|.- .++.+++.+...|...|++..++
T Consensus 17 F~~~~~A~~l~~~L~~~G~~a~i~~~---------------~~~yRV~vGpf~s~~~A~~~~~~L~~~g~~~~iv 76 (81)
T 1uta_A 17 FRGAEQAETVRAQLAFEGFDSKITTN---------------NGWNRVVIGPVKGKENADSTLNRLKMAGHTNCIR 76 (81)
T ss_dssp ESCHHHHHHHHHHHHHHTCCEEEEEC---------------SSSEEEEESSCBTTTHHHHHHHHHHHHCCSCCBC
T ss_pred cCCHHHHHHHHHHHHhCCCCeEEEeC---------------CcEEEEEECCcCCHHHHHHHHHHHHHcCCCcEEE
Confidence 46788999999999998988765421 2345676644 36788888888998888875443
No 265
>3brq_A HTH-type transcriptional regulator ASCG; transcriptional repressor structure escherichia coli, struct genomics, PSI-2; HET: FRU; 2.00A {Escherichia coli}
Probab=62.19 E-value=45 Score=24.69 Aligned_cols=12 Identities=17% Similarity=-0.006 Sum_probs=5.0
Q ss_pred HHHHHHHHhcCC
Q psy437 98 DSVAAALAQERI 109 (184)
Q Consensus 98 e~~a~gL~~~gi 109 (184)
..+++.|-..|.
T Consensus 128 ~~a~~~l~~~G~ 139 (296)
T 3brq_A 128 FNAVAELINAGH 139 (296)
T ss_dssp HHHHHHHHHTTC
T ss_pred HHHHHHHHHCCC
Confidence 334444444443
No 266
>1sqs_A Conserved hypothetical protein; structural genomics, alpha beta protein, PSI, protein struct initiative; HET: TLA; 1.50A {Streptococcus pneumoniae} SCOP: c.23.5.5 PDB: 2oys_A*
Probab=62.14 E-value=45 Score=24.65 Aligned_cols=17 Identities=12% Similarity=0.157 Sum_probs=12.7
Q ss_pred EeeCCCChHHHHHHHHH
Q psy437 113 SYHAGLADKLRNEVQMK 129 (184)
Q Consensus 113 vih~~~p~~~r~~~~~~ 129 (184)
+|++++|...+.++-+.
T Consensus 89 ~y~~~~p~~lK~~iDr~ 105 (242)
T 1sqs_A 89 VYLQNVSVDTKNFIERI 105 (242)
T ss_dssp ECSSSCCHHHHHHHHHT
T ss_pred ccccCCCHHHHHHHHHH
Confidence 57777888777777775
No 267
>3aay_A Putative thiosulfate sulfurtransferase; sulfurtranserase, structural genomics, PSI, structure initiative; 1.90A {Mycobacterium tuberculosis} PDB: 3aax_A 3hwi_A
Probab=62.14 E-value=13 Score=28.25 Aligned_cols=47 Identities=15% Similarity=0.211 Sum_probs=34.4
Q ss_pred HHHHHHHhh--cCCCcEEEEeccHHHHHHHHHHHHh-CCCe-eEEecCCCC
Q psy437 23 EVISLIKAK--YSGQSGIVYCLTRKECDSVAAALAQ-ERIN-AISYHAGLA 69 (184)
Q Consensus 23 ~L~~~l~~~--~~~~~~IIf~~tr~~~e~la~~L~~-~gi~-~~~~hg~l~ 69 (184)
.|...+.+. .+..+.|+||.+-..+...+..|.+ .|+. +..|.||+.
T Consensus 213 ~l~~~~~~~~~~~~~~iv~yC~~G~rs~~a~~~L~~~~G~~~v~~l~GG~~ 263 (277)
T 3aay_A 213 ELAKLYADAGLDNSKETIAYCRIGERSSHTWFVLRELLGHQNVKNYDGSWT 263 (277)
T ss_dssp HHHHHHHHHTCCTTSCEEEECSSHHHHHHHHHHHHTTSCCSCEEEESSHHH
T ss_pred HHHHHHHHcCCCCCCCEEEEcCcHHHHHHHHHHHHHHcCCCcceeeCchHH
Confidence 455555421 2456788899998888888899985 8995 888999853
No 268
>1tjy_A Sugar transport protein; protein-ligand complex, signaling protein; HET: PAV; 1.30A {Salmonella typhimurium} SCOP: c.93.1.1 PDB: 1tm2_A 3t95_A* 3ejw_A*
Probab=62.12 E-value=50 Score=25.16 Aligned_cols=70 Identities=7% Similarity=-0.010 Sum_probs=41.5
Q ss_pred HHHHHHHhCCCeeEEe-cCCCCHHHHHHHHHHHhccCceEEEEEeeccc-HHHHHHHHHhcCCcEEEeeCCC
Q psy437 49 SVAAALAQERINAISY-HAGLADKLRNEVQMKWISNKVHVGHWTVVSKE-CDSVAAALAQERINAISYHAGL 118 (184)
Q Consensus 49 ~la~~L~~~gi~~~~~-hg~l~~~~R~~~~~~f~~g~~~vlVaT~tr~~-~e~~a~gL~~~gi~~~vih~~~ 118 (184)
-+.+.+.+.|+.+... .+.-+.......++.+.+..+.+||..+.... +..+...+...||++..+....
T Consensus 24 g~~~~~~~~g~~~~~~~~~~~d~~~q~~~i~~li~~~vdgiii~~~~~~~~~~~~~~a~~~gipvV~~d~~~ 95 (316)
T 1tjy_A 24 GAQEAGKALGIDVTYDGPTEPSVSGQVQLVNNFVNQGYDAIIVSAVSPDGLCPALKRAMQRGVKILTWDSDT 95 (316)
T ss_dssp HHHHHHHHHTCEEEECCCSSCCHHHHHHHHHHHHHTTCSEEEECCSSSSTTHHHHHHHHHTTCEEEEESSCC
T ss_pred HHHHHHHHhCCEEEEECCCCCCHHHHHHHHHHHHHcCCCEEEEeCCCHHHHHHHHHHHHHCcCEEEEecCCC
Confidence 3344455568777665 35556666666777777777777766554332 2334455666788855555443
No 269
>3k9c_A Transcriptional regulator, LACI family protein; PSI-II, 11026W, structural genomics, PR structure initiative; 2.14A {Rhodococcus jostii}
Probab=62.12 E-value=45 Score=24.91 Aligned_cols=23 Identities=9% Similarity=-0.110 Sum_probs=13.1
Q ss_pred EeecccHHHHHHHHHhcCCcEEE
Q psy437 91 TVVSKECDSVAAALAQERINAIS 113 (184)
Q Consensus 91 T~tr~~~e~~a~gL~~~gi~~~v 113 (184)
++.......+++.|-..|.+-.+
T Consensus 108 ~D~~~~~~~a~~~L~~~G~~~I~ 130 (289)
T 3k9c_A 108 GDDVAGITLAVDHLTELGHRNIA 130 (289)
T ss_dssp ECHHHHHHHHHHHHHHTTCCSEE
T ss_pred eChHHHHHHHHHHHHHCCCCcEE
Confidence 33334566667777666665333
No 270
>1b93_A Protein (methylglyoxal synthase); glycolytic bypass, lyase; 1.90A {Escherichia coli} SCOP: c.24.1.2 PDB: 1egh_A 1ik4_A* 1s8a_A 1s89_A
Probab=62.06 E-value=34 Score=24.09 Aligned_cols=77 Identities=10% Similarity=0.014 Sum_probs=46.5
Q ss_pred CCeEEEEEEccChHHHHHHHHHhhcCC--CcEEEEeccHHHHHHHHHHHHh-CCCeeEEecCCCCHHHHHHHHHHHhccC
Q psy437 8 ANLKYEILPKKNVLKEVISLIKAKYSG--QSGIVYCLTRKECDSVAAALAQ-ERINAISYHAGLADKLRNEVQMKWISNK 84 (184)
Q Consensus 8 ~Nl~y~v~~~~~k~~~L~~~l~~~~~~--~~~IIf~~tr~~~e~la~~L~~-~gi~~~~~hg~l~~~~R~~~~~~f~~g~ 84 (184)
-|+++++... +| ..++.+.++...- +-.|+- |..+ ++.|++ .|+++..+..+ +..-+..+.+...+|+
T Consensus 12 g~V~lsv~D~-dK-~~~v~~ak~~~~ll~Gf~l~A--T~gT----a~~L~e~~Gl~v~~v~k~-~eGG~p~I~d~I~~ge 82 (152)
T 1b93_A 12 KHIALVAHDH-CK-QMLMSWVERHQPLLEQHVLYA--TGTT----GNLISRATGMNVNAMLSG-PMGGDQQVGALISEGK 82 (152)
T ss_dssp CEEEEEECGG-GH-HHHHHHHHHTHHHHTTSEEEE--ETTH----HHHHHHHHCCCCEEECCG-GGTHHHHHHHHHHTTC
T ss_pred CEEEEEEehh-hH-HHHHHHHHHHHHHhCCCEEEE--ccHH----HHHHHHHhCceeEEEEec-CCCCCchHHHHHHCCC
Confidence 3456665544 33 4444444332111 234443 3333 345555 79998887643 2215778999999999
Q ss_pred ceEEEEEee
Q psy437 85 VHVGHWTVV 93 (184)
Q Consensus 85 ~~vlVaT~t 93 (184)
++.+|.|+.
T Consensus 83 IdlVInt~~ 91 (152)
T 1b93_A 83 IDVLIFFWD 91 (152)
T ss_dssp CCEEEEECC
T ss_pred ccEEEEcCC
Confidence 999999996
No 271
>1vmd_A MGS, methylglyoxal synthase; TM1185, structural genomics, JCSG, P structure initiative, PSI, joint center for structural GENO lyase; 2.06A {Thermotoga maritima} SCOP: c.24.1.2
Probab=62.02 E-value=42 Score=24.28 Aligned_cols=43 Identities=12% Similarity=0.028 Sum_probs=32.4
Q ss_pred HHHHHHh-CCCeeEEecCCCCHHHHHHHHHHHhccCceEEEEEee
Q psy437 50 VAAALAQ-ERINAISYHAGLADKLRNEVQMKWISNKVHVGHWTVV 93 (184)
Q Consensus 50 la~~L~~-~gi~~~~~hg~l~~~~R~~~~~~f~~g~~~vlVaT~t 93 (184)
.++.|++ .|+++..+..+ +..-+..+.+...+|+++.||.|+.
T Consensus 64 Ta~~L~e~~Gl~v~~v~k~-~eGG~pqI~d~I~~geIdlVInt~d 107 (178)
T 1vmd_A 64 TGALLQEKLGLKVHRLKSG-PLGGDQQIGAMIAEGKIDVLIFFWD 107 (178)
T ss_dssp HHHHHHHHHCCCCEECSCG-GGTHHHHHHHHHHTTSCCEEEEECC
T ss_pred HHHHHHHHhCceeEEEeec-CCCCCchHHHHHHCCCccEEEEccC
Confidence 3445555 79998887643 2215778999999999999999997
No 272
>1o5k_A DHDPS, dihydrodipicolinate synthase; TM1521, structural genomics, J protein structure initiative, joint center for structural G lyase; HET: MCL; 1.80A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 3pb2_A 3pb0_A
Probab=61.93 E-value=45 Score=26.01 Aligned_cols=95 Identities=7% Similarity=0.006 Sum_probs=59.2
Q ss_pred HHHHHHHHHHhCCCeeEEecC------CCCHHHHHHHHHHHh---ccCceEEEEEeec--ccHHHHHHHHHhcCCcEEEe
Q psy437 46 ECDSVAAALAQERINAISYHA------GLADKLRNEVQMKWI---SNKVHVGHWTVVS--KECDSVAAALAQERINAISY 114 (184)
Q Consensus 46 ~~e~la~~L~~~gi~~~~~hg------~l~~~~R~~~~~~f~---~g~~~vlVaT~tr--~~~e~~a~gL~~~gi~~~vi 114 (184)
..+.+.++|.+.|+...+.-| .|+.+||.++++... .|+++||+.|.+- .++-.+++.....|.++..+
T Consensus 34 ~l~~lv~~li~~Gv~gl~v~GtTGE~~~Ls~eEr~~vi~~~~~~~~grvpViaGvg~~st~~ai~la~~A~~~Gadavlv 113 (306)
T 1o5k_A 34 SYERLVRYQLENGVNALIVLGTTGESPTVNEDEREKLVSRTLEIVDGKIPVIVGAGTNSTEKTLKLVKQAEKLGANGVLV 113 (306)
T ss_dssp HHHHHHHHHHHTTCCEEEESSGGGTGGGCCHHHHHHHHHHHHHHHTTSSCEEEECCCSCHHHHHHHHHHHHHHTCSEEEE
T ss_pred HHHHHHHHHHHcCCCEEEeCccccchhhCCHHHHHHHHHHHHHHhCCCCeEEEcCCCccHHHHHHHHHHHHhcCCCEEEE
Confidence 345566666667776665555 478899999988876 4788899887653 34445566667778874322
Q ss_pred ---eCCCCh--HHHHHHHHHhhCCCceEEEE
Q psy437 115 ---HAGLAD--KLRNEVQMKWISNKVHLYNV 140 (184)
Q Consensus 115 ---h~~~p~--~~r~~~~~~f~~~~~~v~va 140 (184)
.|..|. ....|....-..-.++|++.
T Consensus 114 ~~P~y~~~s~~~l~~~f~~va~a~~lPiilY 144 (306)
T 1o5k_A 114 VTPYYNKPTQEGLYQHYKYISERTDLGIVVY 144 (306)
T ss_dssp ECCCSSCCCHHHHHHHHHHHHTTCSSCEEEE
T ss_pred CCCCCCCCCHHHHHHHHHHHHHhCCCCEEEE
Confidence 233332 23344445455556777775
No 273
>2j6p_A SB(V)-AS(V) reductase; arsenate reductase, antimonate reductase, CDC25 phosphatase, rhodanese, C-MYC epitope, oxidoreductase; HET: EPE; 2.15A {Leishmania major}
Probab=61.49 E-value=11 Score=26.02 Aligned_cols=48 Identities=10% Similarity=0.088 Sum_probs=27.4
Q ss_pred HHHHHHHHHhhcCCCcEEE-Ee-ccHHH----HHHHHHHHHhCCC---eeEEecCCCCH
Q psy437 21 LKEVISLIKAKYSGQSGIV-YC-LTRKE----CDSVAAALAQERI---NAISYHAGLAD 70 (184)
Q Consensus 21 ~~~L~~~l~~~~~~~~~II-f~-~tr~~----~e~la~~L~~~gi---~~~~~hg~l~~ 70 (184)
+..+...+.. ...+.|| || .+-.. +..++..|.+.|+ ++..+.||+..
T Consensus 56 ~~~l~~~l~~--~~~~~vV~yC~~sg~rs~~aa~~~~~~L~~~G~~~~~v~~L~GG~~~ 112 (152)
T 2j6p_A 56 YEKLAKTLFE--EKKELAVFHCAQSLVRAPKGANRFALAQKKLGYVLPAVYVLRGGWEA 112 (152)
T ss_dssp HHHHHHHHHH--TTCCEEEEECSSSSSHHHHHHHHHHHHHHHHTCCCSEEEEETTHHHH
T ss_pred HHHHHHHhcc--cCCCEEEEEcCCCCCccHHHHHHHHHHHHHcCCCCCCEEEEcCcHHH
Confidence 3344444433 2344455 59 44322 2344577888896 67788999754
No 274
>3fni_A Putative diflavin flavoprotein A 3; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.30A {Nostoc SP} PDB: 2klb_A
Probab=61.46 E-value=17 Score=25.32 Aligned_cols=57 Identities=9% Similarity=0.036 Sum_probs=35.5
Q ss_pred EEEEe----ccHHHHHHHHHHHHhCCCeeEEecCCCCHHHHHHHHHHHhccCceEEEEEeecc
Q psy437 37 GIVYC----LTRKECDSVAAALAQERINAISYHAGLADKLRNEVQMKWISNKVHVGHWTVVSK 95 (184)
Q Consensus 37 ~IIf~----~tr~~~e~la~~L~~~gi~~~~~hg~l~~~~R~~~~~~f~~g~~~vlVaT~tr~ 95 (184)
.|||. +|++.++.+++.|.+.|+.+..+.-.... ....+...+...+ -+|++|++..
T Consensus 8 ~IvY~S~~GnT~~iA~~ia~~l~~~g~~v~~~~~~~~~-~~~~~~~~~~~~d-~ii~Gspty~ 68 (159)
T 3fni_A 8 GVFYVSEYGYSDRLAQAIINGITKTGVGVDVVDLGAAV-DLQELRELVGRCT-GLVIGMSPAA 68 (159)
T ss_dssp EEEECTTSTTHHHHHHHHHHHHHHTTCEEEEEESSSCC-CHHHHHHHHHTEE-EEEEECCBTT
T ss_pred EEEEECCChHHHHHHHHHHHHHHHCCCeEEEEECcCcC-CHHHHHHHHHhCC-EEEEEcCcCC
Confidence 45554 57788888888888888887766543220 2334444444433 4778888764
No 275
>3m5v_A DHDPS, dihydrodipicolinate synthase; TIM barrel, csgid, amino-acid biosynthesis, diaminopimelate biosynthesis, lyase, lysine biosynthesis; HET: MSE; 1.80A {Campylobacter jejuni} SCOP: c.1.10.0 PDB: 3ler_A*
Probab=61.24 E-value=52 Score=25.54 Aligned_cols=95 Identities=12% Similarity=-0.017 Sum_probs=59.6
Q ss_pred HHHHHHHHHHhCCCeeEEecC------CCCHHHHHHHHHHHhc---c-CceEEEEEeec--ccHHHHHHHHHhcCCcEEE
Q psy437 46 ECDSVAAALAQERINAISYHA------GLADKLRNEVQMKWIS---N-KVHVGHWTVVS--KECDSVAAALAQERINAIS 113 (184)
Q Consensus 46 ~~e~la~~L~~~gi~~~~~hg------~l~~~~R~~~~~~f~~---g-~~~vlVaT~tr--~~~e~~a~gL~~~gi~~~v 113 (184)
..+.+.++|.+.|+.-.+.-| .|+.+||.++++.+.+ | +++||+.|.+- .++-.+++.....|.++..
T Consensus 29 ~l~~lv~~li~~Gv~gl~v~GttGE~~~Ls~~Er~~v~~~~~~~~~g~rvpviaGvg~~~t~~ai~la~~a~~~Gadavl 108 (301)
T 3m5v_A 29 SYARLIKRQIENGIDAVVPVGTTGESATLTHEEHRTCIEIAVETCKGTKVKVLAGAGSNATHEAVGLAKFAKEHGADGIL 108 (301)
T ss_dssp HHHHHHHHHHHTTCCEEECSSTTTTGGGSCHHHHHHHHHHHHHHHTTSSCEEEEECCCSSHHHHHHHHHHHHHTTCSEEE
T ss_pred HHHHHHHHHHHcCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCCCCCeEEEeCCCCCHHHHHHHHHHHHHcCCCEEE
Confidence 344555566566666555544 2678999999888764 6 78999877653 4555666777778888533
Q ss_pred e---eCCCCh--HHHHHHHHHhhCCCceEEEE
Q psy437 114 Y---HAGLAD--KLRNEVQMKWISNKVHLYNV 140 (184)
Q Consensus 114 i---h~~~p~--~~r~~~~~~f~~~~~~v~va 140 (184)
+ .|..|. ....|.......-.++|++.
T Consensus 109 v~~P~y~~~s~~~l~~~f~~va~a~~lPiilY 140 (301)
T 3m5v_A 109 SVAPYYNKPTQQGLYEHYKAIAQSVDIPVLLY 140 (301)
T ss_dssp EECCCSSCCCHHHHHHHHHHHHHHCSSCEEEE
T ss_pred EcCCCCCCCCHHHHHHHHHHHHHhCCCCEEEE
Confidence 2 123332 33455555555557888876
No 276
>1rtt_A Conserved hypothetical protein; protein structure initiative, SAD with sulfur, putative REDU PSI; 1.28A {Pseudomonas aeruginosa} SCOP: c.23.5.4 PDB: 1x77_A*
Probab=61.06 E-value=26 Score=24.85 Aligned_cols=18 Identities=22% Similarity=0.386 Sum_probs=12.4
Q ss_pred EeeCCCChHHHHHHHHHh
Q psy437 113 SYHAGLADKLRNEVQMKW 130 (184)
Q Consensus 113 vih~~~p~~~r~~~~~~f 130 (184)
+|++++|...+.++-+..
T Consensus 82 ~y~~~~p~~lK~~iD~~~ 99 (193)
T 1rtt_A 82 EYNYSMAGVLKNAIDWAS 99 (193)
T ss_dssp EETTEECHHHHHHHHHHT
T ss_pred ccccCcCHHHHHHHHHhc
Confidence 567777777777776653
No 277
>1f6k_A N-acetylneuraminate lyase; beta barrel; 1.60A {Haemophilus influenzae} SCOP: c.1.10.1 PDB: 1f5z_A 1f6p_A 1f73_A* 1f74_A* 1f7b_A*
Probab=60.96 E-value=53 Score=25.39 Aligned_cols=94 Identities=5% Similarity=-0.036 Sum_probs=54.8
Q ss_pred HHHHHHHHHh-CCCeeEEecC------CCCHHHHHHHHHHHh---ccCceEEEEEeec--ccHHHHHHHHHhcCCcEEEe
Q psy437 47 CDSVAAALAQ-ERINAISYHA------GLADKLRNEVQMKWI---SNKVHVGHWTVVS--KECDSVAAALAQERINAISY 114 (184)
Q Consensus 47 ~e~la~~L~~-~gi~~~~~hg------~l~~~~R~~~~~~f~---~g~~~vlVaT~tr--~~~e~~a~gL~~~gi~~~vi 114 (184)
.+.+.++|.+ .|+...+..| .|+.+||.++++... .|+++||+.|.+- .++-.+++.....|.++..+
T Consensus 26 l~~lv~~li~~~Gv~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~~~grvpviaGvg~~~t~~ai~la~~a~~~Gadavlv 105 (293)
T 1f6k_A 26 LRQIIRHNIDKMKVDGLYVGGSTGENFMLSTEEKKEIFRIAKDEAKDQIALIAQVGSVNLKEAVELGKYATELGYDCLSA 105 (293)
T ss_dssp HHHHHHHHHHTSCCSEEEESSGGGTGGGSCHHHHHHHHHHHHHHHTTSSEEEEECCCSCHHHHHHHHHHHHHHTCSEEEE
T ss_pred HHHHHHHHHhhCCCcEEEeCccccchhhCCHHHHHHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHHHHHhcCCCEEEE
Confidence 3445555555 5665544444 378899999888776 4788888877653 34445566666778774322
Q ss_pred ---eCCCCh--HHHHHHHHHhhCCCceEEEE
Q psy437 115 ---HAGLAD--KLRNEVQMKWISNKVHLYNV 140 (184)
Q Consensus 115 ---h~~~p~--~~r~~~~~~f~~~~~~v~va 140 (184)
.|..|. ....|....-..-.++|++.
T Consensus 106 ~~P~y~~~~~~~l~~~f~~va~a~~lPiilY 136 (293)
T 1f6k_A 106 VTPFYYKFSFPEIKHYYDTIIAETGSNMIVY 136 (293)
T ss_dssp ECCCSSCCCHHHHHHHHHHHHHHHCCCEEEE
T ss_pred CCCCCCCCCHHHHHHHHHHHHHhCCCCEEEE
Confidence 232332 22334444444345677765
No 278
>3qmx_A Glutaredoxin A, glutaredoxin 3; electron transport; 1.82A {Synechocystis SP} SCOP: c.47.1.0
Probab=60.95 E-value=29 Score=22.00 Aligned_cols=55 Identities=13% Similarity=0.065 Sum_probs=36.5
Q ss_pred CCcEEEEe-ccHHHHHHHHHHHHhCCCeeEEecCCCCHHHHHHHHHHH-hccCceEE
Q psy437 34 GQSGIVYC-LTRKECDSVAAALAQERINAISYHAGLADKLRNEVQMKW-ISNKVHVG 88 (184)
Q Consensus 34 ~~~~IIf~-~tr~~~e~la~~L~~~gi~~~~~hg~l~~~~R~~~~~~f-~~g~~~vl 88 (184)
..+.+||+ +++..|..+...|.+.|++...+.-..+++.+....+.. -...++.+
T Consensus 15 ~~~v~vy~~~~Cp~C~~ak~~L~~~~i~y~~idI~~~~~~~~~l~~~~~g~~~vP~i 71 (99)
T 3qmx_A 15 SAKIEIYTWSTCPFCMRALALLKRKGVEFQEYCIDGDNEAREAMAARANGKRSLPQI 71 (99)
T ss_dssp CCCEEEEECTTCHHHHHHHHHHHHHTCCCEEEECTTCHHHHHHHHHHTTTCCCSCEE
T ss_pred CCCEEEEEcCCChhHHHHHHHHHHCCCCCEEEEcCCCHHHHHHHHHHhCCCCCCCEE
Confidence 34567775 778899999999999998877776666655554443333 23445554
No 279
>2r8w_A AGR_C_1641P; APC7498, dihydrodipicolinate synthase, agrobacterium tumefac C58, structural genomics, PSI-2; HET: MSE; 1.80A {Agrobacterium tumefaciens str}
Probab=60.58 E-value=48 Score=26.25 Aligned_cols=131 Identities=12% Similarity=0.065 Sum_probs=66.6
Q ss_pred CCCCCCCeEEEEEEccChHHHHHHHHHhhcCCCcEEE-Eecc---------HHHHHHHHHHHHhCCCeeEEecC------
Q psy437 3 SSFNRANLKYEILPKKNVLKEVISLIKAKYSGQSGIV-YCLT---------RKECDSVAAALAQERINAISYHA------ 66 (184)
Q Consensus 3 ~s~~R~Nl~y~v~~~~~k~~~L~~~l~~~~~~~~~II-f~~t---------r~~~e~la~~L~~~gi~~~~~hg------ 66 (184)
.|.-|.||+|.-.+...+...... . -++++ ...| .+..+.+.++|.+.|+...+.-|
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~m~---~----~~Gv~~a~vTPF~~dg~iD~~~l~~lv~~li~~Gv~Gl~v~GtTGE~~ 82 (332)
T 2r8w_A 10 HSSGRENLYFQGMPIKARETDMAT---R----FKGLSAFPITPADEAGRVDIEAFSALIARLDAAEVDSVGILGSTGIYM 82 (332)
T ss_dssp --------------------CGGG---G----GCEEEECCCCCBCTTCCBCHHHHHHHHHHHHHHTCSEEEESSTTTTGG
T ss_pred ccccccceeeccCCCCchHHHHHh---c----cCCeeEEeeCCcCCCCCcCHHHHHHHHHHHHHcCCCEEEECccccChh
Confidence 466799999987764333322211 1 12332 2222 23456777777778888777666
Q ss_pred CCCHHHHHHHHHHHh---ccCceEEEEEeec--ccHHHHHHHHHhcCCcEEEe---eCCCCh--HHHHHHHHHhhCCCce
Q psy437 67 GLADKLRNEVQMKWI---SNKVHVGHWTVVS--KECDSVAAALAQERINAISY---HAGLAD--KLRNEVQMKWISNKVH 136 (184)
Q Consensus 67 ~l~~~~R~~~~~~f~---~g~~~vlVaT~tr--~~~e~~a~gL~~~gi~~~vi---h~~~p~--~~r~~~~~~f~~~~~~ 136 (184)
.|+.+||.++++... .|+++||+.|.+- .++-.+++.....|.++..+ .|..|. ....|.......-.++
T Consensus 83 ~Ls~eEr~~vi~~~ve~~~grvpViaGvg~~st~eai~la~~A~~~Gadavlv~~P~Y~~~s~~~l~~~f~~VA~a~~lP 162 (332)
T 2r8w_A 83 YLTREERRRAIEAAATILRGRRTLMAGIGALRTDEAVALAKDAEAAGADALLLAPVSYTPLTQEEAYHHFAAVAGATALP 162 (332)
T ss_dssp GSCHHHHHHHHHHHHHHHTTSSEEEEEECCSSHHHHHHHHHHHHHHTCSEEEECCCCSSCCCHHHHHHHHHHHHHHCSSC
T ss_pred hCCHHHHHHHHHHHHHHhCCCCcEEEecCCCCHHHHHHHHHHHHhcCCCEEEECCCCCCCCCHHHHHHHHHHHHHhcCCC
Confidence 378899999988877 4788999887653 34445566677778884322 222232 2344555555555688
Q ss_pred EEEE
Q psy437 137 LYNV 140 (184)
Q Consensus 137 v~va 140 (184)
|++.
T Consensus 163 iilY 166 (332)
T 2r8w_A 163 LAIY 166 (332)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8876
No 280
>2q9u_A A-type flavoprotein; flavodoxin like, beta lactamase like, oxidoreductase; HET: FMN; 1.90A {Giardia intestinalis}
Probab=60.54 E-value=31 Score=27.67 Aligned_cols=18 Identities=0% Similarity=0.034 Sum_probs=13.3
Q ss_pred EEeeCCCChHHHHHHHHH
Q psy437 112 ISYHAGLADKLRNEVQMK 129 (184)
Q Consensus 112 ~vih~~~p~~~r~~~~~~ 129 (184)
-+|++++|...++++.+.
T Consensus 316 P~y~~~~~~~~k~fld~l 333 (414)
T 2q9u_A 316 PTLNNTMMPSVAAALNYV 333 (414)
T ss_dssp CCBTTBCCHHHHHHHHHH
T ss_pred CccCcCchHHHHHHHHHH
Confidence 357888888888877764
No 281
>3miz_A Putative transcriptional regulator protein, LACI family; LACL family, protein structure initiative II (PSI II), NYSGXRC, structural genomics; 1.91A {Rhizobium etli}
Probab=60.35 E-value=15 Score=27.72 Aligned_cols=70 Identities=7% Similarity=0.055 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHhCCCeeEEecCCCCHHHHHHHHHHHhccCceEEEEEeecccHHHHHHHHHhcCCcEEEeeC
Q psy437 45 KECDSVAAALAQERINAISYHAGLADKLRNEVQMKWISNKVHVGHWTVVSKECDSVAAALAQERINAISYHA 116 (184)
Q Consensus 45 ~~~e~la~~L~~~gi~~~~~hg~l~~~~R~~~~~~f~~g~~~vlVaT~tr~~~e~~a~gL~~~gi~~~vih~ 116 (184)
....-+.+.+.+.|+.+..+...-+.+.-...++.+.+..+..||..+..... ....+...|++++++..
T Consensus 31 ~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdGiIi~~~~~~~--~~~~~~~~~iPvV~~~~ 100 (301)
T 3miz_A 31 DIVRGIQDWANANGKTILIANTGGSSEREVEIWKMFQSHRIDGVLYVTMYRRI--VDPESGDVSIPTVMINC 100 (301)
T ss_dssp HHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEEEEEEEEE--CCCCCTTCCCCEEEEEE
T ss_pred HHHHHHHHHHHHCCCEEEEEeCCCChHHHHHHHHHHHhCCCCEEEEecCCccH--HHHHHHhCCCCEEEECC
Confidence 44555566666777777776666555555566677776666665554433211 12233445666444443
No 282
>3eb2_A Putative dihydrodipicolinate synthetase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI2., structural genomics; HET: PGE; 2.04A {Rhodopseudomonas palustris} SCOP: c.1.10.0
Probab=60.34 E-value=35 Score=26.56 Aligned_cols=95 Identities=11% Similarity=-0.021 Sum_probs=58.3
Q ss_pred HHHHHHHHHHhCCCeeEEecC------CCCHHHHHHHHHHHhc---cCceEEEEEee--cccHHHHHHHHHhcCCcEEEe
Q psy437 46 ECDSVAAALAQERINAISYHA------GLADKLRNEVQMKWIS---NKVHVGHWTVV--SKECDSVAAALAQERINAISY 114 (184)
Q Consensus 46 ~~e~la~~L~~~gi~~~~~hg------~l~~~~R~~~~~~f~~---g~~~vlVaT~t--r~~~e~~a~gL~~~gi~~~vi 114 (184)
..+.+.++|.+.|+.-.+.-| .|+.+||.++++.+.+ |+++||+.|.+ -.++-.+++.....|.++..+
T Consensus 26 ~l~~lv~~li~~Gv~gl~v~GttGE~~~Ls~~Er~~v~~~~~~~~~grvpviaGvg~~~t~~ai~la~~a~~~Gadavlv 105 (300)
T 3eb2_A 26 VMGRLCDDLIQAGVHGLTPLGSTGEFAYLGTAQREAVVRATIEAAQRRVPVVAGVASTSVADAVAQAKLYEKLGADGILA 105 (300)
T ss_dssp HHHHHHHHHHHTTCSCBBTTSGGGTGGGCCHHHHHHHHHHHHHHHTTSSCBEEEEEESSHHHHHHHHHHHHHHTCSEEEE
T ss_pred HHHHHHHHHHHcCCCEEEECccccCccccCHHHHHHHHHHHHHHhCCCCcEEEeCCCCCHHHHHHHHHHHHHcCCCEEEE
Confidence 345555666666665544443 3788999999888764 78888877764 345555667777778875222
Q ss_pred ---eCCCCh--HHHHHHHHHhhCCCceEEEE
Q psy437 115 ---HAGLAD--KLRNEVQMKWISNKVHLYNV 140 (184)
Q Consensus 115 ---h~~~p~--~~r~~~~~~f~~~~~~v~va 140 (184)
.|..|. ....|....-..-.++|++.
T Consensus 106 ~~P~y~~~~~~~l~~~f~~va~a~~lPiilY 136 (300)
T 3eb2_A 106 ILEAYFPLKDAQIESYFRAIADAVEIPVVIY 136 (300)
T ss_dssp EECCSSCCCHHHHHHHHHHHHHHCSSCEEEE
T ss_pred cCCCCCCCCHHHHHHHHHHHHHHCCCCEEEE
Confidence 233343 33445555544455787775
No 283
>3hzu_A Thiosulfate sulfurtransferase SSEA; niaid, ssgcid, infectious disease, transferase structural genomics; 2.10A {Mycobacterium tuberculosis} PDB: 3p3a_A
Probab=60.32 E-value=5.4 Score=31.46 Aligned_cols=48 Identities=15% Similarity=0.194 Sum_probs=35.6
Q ss_pred HHHHHHHHhhcCCCcEEEEeccHHHHHHHHHHHHh-CCCe-eEEecCCCC
Q psy437 22 KEVISLIKAKYSGQSGIVYCLTRKECDSVAAALAQ-ERIN-AISYHAGLA 69 (184)
Q Consensus 22 ~~L~~~l~~~~~~~~~IIf~~tr~~~e~la~~L~~-~gi~-~~~~hg~l~ 69 (184)
+.|.+.+....+..+.|+||.+-..+...+..|.+ .|++ +..|.||+.
T Consensus 247 ~~l~~~~~~l~~~~~ivvyC~sG~rs~~a~~~L~~~~G~~~v~~~~GG~~ 296 (318)
T 3hzu_A 247 EELERLYDFINPDDQTVVYCRIGERSSHTWFVLTHLLGKADVRNYDGSWT 296 (318)
T ss_dssp HHHHHHTTTCCTTCCCEEECSSSHHHHHHHHHHHHTSCCSSCEECTTHHH
T ss_pred HHHHHHhcCCCCCCcEEEEcCChHHHHHHHHHHHHHcCCCCeeEeCCcHH
Confidence 34555443222456789999999999999999987 8995 888999854
No 284
>1d4a_A DT-diaphorase, quinone reductase; flavoprotein, rossman fold, oxidoreductase; HET: FAD; 1.70A {Homo sapiens} SCOP: c.23.5.3 PDB: 1dxo_A* 1gg5_A* 1kbo_A* 1kbq_A* 2f1o_A* 3jsx_A* 1h69_A* 1h66_A* 1qbg_A* 1dxq_A* 1qrd_A*
Probab=60.13 E-value=49 Score=25.18 Aligned_cols=19 Identities=16% Similarity=0.146 Sum_probs=16.8
Q ss_pred EeeCCCChHHHHHHHHHhh
Q psy437 113 SYHAGLADKLRNEVQMKWI 131 (184)
Q Consensus 113 vih~~~p~~~r~~~~~~f~ 131 (184)
+|++++|...+.++-+.+.
T Consensus 103 ~y~~s~Pa~LK~~iDrv~~ 121 (273)
T 1d4a_A 103 LQWFGVPAILKGWFERVFI 121 (273)
T ss_dssp CBTTBCCHHHHHHHHHHSC
T ss_pred hhhccCCHHHHHHHHHHHh
Confidence 6899999999999999753
No 285
>2h54_A Caspase-1; allosteric site, dimer interface, hydrolase; HET: PHQ; 1.80A {Homo sapiens} PDB: 1rwm_A* 1rwk_A* 1rwo_A* 1rwp_A* 1rwv_A* 1rww_A* 1rwn_A* 2h48_A* 2h4w_A* 1rwx_A* 2hbq_A* 2hby_A* 1ibc_A 3d6m_A* 2h4y_A* 2h51_A* 3d6f_A* 3d6h_A* 2hbz_A* 2hbr_A* ...
Probab=60.03 E-value=40 Score=24.21 Aligned_cols=47 Identities=6% Similarity=0.053 Sum_probs=38.5
Q ss_pred CcEEEEecc-----------HHHHHHHHHHHHhCCCeeEEecCCCCHHHHHHHHHHHhc
Q psy437 35 QSGIVYCLT-----------RKECDSVAAALAQERINAISYHAGLADKLRNEVQMKWIS 82 (184)
Q Consensus 35 ~~~IIf~~t-----------r~~~e~la~~L~~~gi~~~~~hg~l~~~~R~~~~~~f~~ 82 (184)
+.+||+.+. ..+++.+++.|+..|+.+.. +-+++.++-.+.+++|..
T Consensus 44 g~ALIInn~~f~~~~~R~G~~~Da~~L~~~f~~LgF~V~~-~~dlt~~em~~~l~~f~~ 101 (178)
T 2h54_A 44 RLALIICNEEFDSIPRRTGAEVDITGMTMLLQNLGYSVDV-KKNLTASDMTTELEAFAH 101 (178)
T ss_dssp CEEEEEECCCCSSSCCCTTHHHHHHHHHHHHHHTTCEEEE-EESCCHHHHHHHHHHHHT
T ss_pred CEEEEEehhhcCCCccCCCCHHHHHHHHHHHHHCCCEEEE-ecCCCHHHHHHHHHHHHh
Confidence 457888775 47899999999999999865 567888888888988864
No 286
>4f67_A UPF0176 protein LPG2838; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium; 1.79A {Legionella pneumophila subsp}
Probab=59.99 E-value=5.6 Score=30.78 Aligned_cols=37 Identities=14% Similarity=0.368 Sum_probs=31.9
Q ss_pred CCCcEEEEeccHHHHHHHHHHHHhCCC-eeEEecCCCC
Q psy437 33 SGQSGIVYCLTRKECDSVAAALAQERI-NAISYHAGLA 69 (184)
Q Consensus 33 ~~~~~IIf~~tr~~~e~la~~L~~~gi-~~~~~hg~l~ 69 (184)
+..+.++||.+-..+...+..|...|+ ++..+.||+.
T Consensus 180 kdk~IVvyC~~G~RS~~Aa~~L~~~Gf~nV~~L~GGi~ 217 (265)
T 4f67_A 180 KDKKIAMFCTGGIRCEKTTAYMKELGFEHVYQLHDGIL 217 (265)
T ss_dssp TTSCEEEECSSSHHHHHHHHHHHHHTCSSEEEETTHHH
T ss_pred CCCeEEEEeCCChHHHHHHHHHHHcCCCCEEEecCHHH
Confidence 567789999998899999999999999 4778889865
No 287
>2lqo_A Putative glutaredoxin RV3198.1/MT3292; TRX fold, oxidoreductase; NMR {Mycobacterium tuberculosis}
Probab=59.87 E-value=28 Score=21.95 Aligned_cols=57 Identities=14% Similarity=0.018 Sum_probs=39.2
Q ss_pred CcEEEEe-ccHHHHHHHHHHHHhCCCeeEEecCCCCHHHHHHHHHHHhcc--CceEEEEEe
Q psy437 35 QSGIVYC-LTRKECDSVAAALAQERINAISYHAGLADKLRNEVQMKWISN--KVHVGHWTV 92 (184)
Q Consensus 35 ~~~IIf~-~tr~~~e~la~~L~~~gi~~~~~hg~l~~~~R~~~~~~f~~g--~~~vlVaT~ 92 (184)
.+..||+ +++..|......|.+.|++...+.=..+++.+..+.+. ..| .+++|+.-+
T Consensus 4 a~I~vYs~~~Cp~C~~aK~~L~~~gi~y~~idi~~d~~~~~~~~~~-~~G~~tVP~I~i~D 63 (92)
T 2lqo_A 4 AALTIYTTSWCGYCLRLKTALTANRIAYDEVDIEHNRAAAEFVGSV-NGGNRTVPTVKFAD 63 (92)
T ss_dssp SCEEEEECTTCSSHHHHHHHHHHTTCCCEEEETTTCHHHHHHHHHH-SSSSSCSCEEEETT
T ss_pred CcEEEEcCCCCHhHHHHHHHHHhcCCceEEEEcCCCHHHHHHHHHH-cCCCCEeCEEEEeC
Confidence 4567785 56778899999999999988877766666666655443 233 467665533
No 288
>3tak_A DHDPS, dihydrodipicolinate synthase; TIM barrel, lysine biosynthesis, pyruvate, lyase; 1.42A {Acinetobacter baumannii} PDB: 3pud_A* 3pue_A* 3pul_A 3rk8_A 3tce_A* 3tdf_A 3u8g_A 3uqn_A 4dxv_A
Probab=59.80 E-value=43 Score=25.86 Aligned_cols=93 Identities=12% Similarity=0.006 Sum_probs=55.0
Q ss_pred HHHHHHHHhCCCeeEEecC------CCCHHHHHHHHHHHhc---cCceEEEEEeec--ccHHHHHHHHHhcCCcEEEe--
Q psy437 48 DSVAAALAQERINAISYHA------GLADKLRNEVQMKWIS---NKVHVGHWTVVS--KECDSVAAALAQERINAISY-- 114 (184)
Q Consensus 48 e~la~~L~~~gi~~~~~hg------~l~~~~R~~~~~~f~~---g~~~vlVaT~tr--~~~e~~a~gL~~~gi~~~vi-- 114 (184)
+.+.++|-+.|+.-.+.-| .|+.+||.++++.+.+ |+++||+.|.+- .++-.+++.....|.++..+
T Consensus 25 ~~lv~~li~~Gv~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~~~gr~pviaGvg~~~t~~ai~la~~a~~~Gadavlv~~ 104 (291)
T 3tak_A 25 EKLVEWHIEQGTNSIVAVGTTGEASTLSMEEHTQVIKEIIRVANKRIPIIAGTGANSTREAIELTKAAKDLGADAALLVT 104 (291)
T ss_dssp HHHHHHHHHHTCCEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTSSCEEEECCCSSHHHHHHHHHHHHHHTCSEEEEEC
T ss_pred HHHHHHHHHCCCCEEEECccccccccCCHHHHHHHHHHHHHHhCCCCeEEEeCCCCCHHHHHHHHHHHHhcCCCEEEEcC
Confidence 3344444444554433333 2678999999888764 788999877653 45555566677778875322
Q ss_pred -eCCCCh--HHHHHHHHHhhCCCceEEEE
Q psy437 115 -HAGLAD--KLRNEVQMKWISNKVHLYNV 140 (184)
Q Consensus 115 -h~~~p~--~~r~~~~~~f~~~~~~v~va 140 (184)
.|..|. ....|..+.-..-.++|++.
T Consensus 105 P~y~~~~~~~l~~~f~~ia~a~~lPiilY 133 (291)
T 3tak_A 105 PYYNKPTQEGLYQHYKAIAEAVELPLILY 133 (291)
T ss_dssp CCSSCCCHHHHHHHHHHHHHHCCSCEEEE
T ss_pred CCCCCCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 223332 33445555555557888876
No 289
>3si9_A DHDPS, dihydrodipicolinate synthase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, TIM barrel; 2.10A {Bartonella henselae}
Probab=59.73 E-value=46 Score=26.17 Aligned_cols=96 Identities=11% Similarity=0.007 Sum_probs=62.6
Q ss_pred HHHHHHHHHHHhCCCeeEEecC------CCCHHHHHHHHHHHhc---cCceEEEEEeec--ccHHHHHHHHHhcCCcEEE
Q psy437 45 KECDSVAAALAQERINAISYHA------GLADKLRNEVQMKWIS---NKVHVGHWTVVS--KECDSVAAALAQERINAIS 113 (184)
Q Consensus 45 ~~~e~la~~L~~~gi~~~~~hg------~l~~~~R~~~~~~f~~---g~~~vlVaT~tr--~~~e~~a~gL~~~gi~~~v 113 (184)
...+.+.++|.+.|+.-.+.-| .|+.+||.++++.+.+ |+++||+.|.+- .++-.+++.....|.++..
T Consensus 43 ~~l~~li~~li~~Gv~Gl~v~GtTGE~~~Ls~~Er~~v~~~~v~~~~grvpViaGvg~~st~~ai~la~~A~~~Gadavl 122 (315)
T 3si9_A 43 KAFCNFVEWQITQGINGVSPVGTTGESPTLTHEEHKRIIELCVEQVAKRVPVVAGAGSNSTSEAVELAKHAEKAGADAVL 122 (315)
T ss_dssp HHHHHHHHHHHHTTCSEEECSSTTTTGGGSCHHHHHHHHHHHHHHHTTSSCBEEECCCSSHHHHHHHHHHHHHTTCSEEE
T ss_pred HHHHHHHHHHHHcCCCEEEeCccccCccccCHHHHHHHHHHHHHHhCCCCcEEEeCCCCCHHHHHHHHHHHHhcCCCEEE
Confidence 3455666677677776666555 3678999999988764 788999887654 4555566777778888532
Q ss_pred e---eCCCCh--HHHHHHHHHhhCCCceEEEE
Q psy437 114 Y---HAGLAD--KLRNEVQMKWISNKVHLYNV 140 (184)
Q Consensus 114 i---h~~~p~--~~r~~~~~~f~~~~~~v~va 140 (184)
+ .|..|. ....|....-..-.++|++.
T Consensus 123 v~~P~y~~~~~~~l~~~f~~va~a~~lPiilY 154 (315)
T 3si9_A 123 VVTPYYNRPNQRGLYTHFSSIAKAISIPIIIY 154 (315)
T ss_dssp EECCCSSCCCHHHHHHHHHHHHHHCSSCEEEE
T ss_pred ECCCCCCCCCHHHHHHHHHHHHHcCCCCEEEE
Confidence 2 223332 34455555555557888887
No 290
>3e3m_A Transcriptional regulator, LACI family; structural genomics, DNA-binding, plasmid, transcription regulation, PSI-2; 1.60A {Silicibacter pomeroyi}
Probab=59.67 E-value=59 Score=25.19 Aligned_cols=68 Identities=7% Similarity=0.076 Sum_probs=46.8
Q ss_pred HHHHHHHHHHhCCCeeEEecCCCCHHHHHHHHHHHhccCceEEEEEeecccHHHHHHHHHhcCCcEEEe
Q psy437 46 ECDSVAAALAQERINAISYHAGLADKLRNEVQMKWISNKVHVGHWTVVSKECDSVAAALAQERINAISY 114 (184)
Q Consensus 46 ~~e~la~~L~~~gi~~~~~hg~l~~~~R~~~~~~f~~g~~~vlVaT~tr~~~e~~a~gL~~~gi~~~vi 114 (184)
....+.+.+.+.|+.+..+..+.+.+.-...++.+....+..||..+.... +.....|...|++++++
T Consensus 88 ~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdGiI~~~~~~~-~~~~~~l~~~~iPvV~i 155 (355)
T 3e3m_A 88 TAQSLTDVLEQGGLQLLLGYTAYSPEREEQLVETMLRRRPEAMVLSYDGHT-EQTIRLLQRASIPIVEI 155 (355)
T ss_dssp HHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHTCCSEEEEECSCCC-HHHHHHHHHCCSCEEEE
T ss_pred HHHHHHHHHHHCCCEEEEEeCCCChHHHHHHHHHHHhCCCCEEEEeCCCCC-HHHHHHHHhCCCCEEEE
Confidence 344555666778998888777777766667788888888887777665443 24445677788885445
No 291
>2ojp_A DHDPS, dihydrodipicolinate synthase; dimer, lysine biosynthe lyase; HET: KGC GOL; 1.70A {Escherichia coli} PDB: 1yxc_A 1dhp_A 1yxd_A* 2ats_A* 3du0_A* 3c0j_A* 3ubs_A* 4eou_A* 3i7q_A* 3i7r_A* 3i7s_A* 2pur_A* 1s5v_A 1s5w_A 1s5t_A 3den_A* 2a6l_A 2a6n_A 3g0s_A
Probab=59.64 E-value=40 Score=26.10 Aligned_cols=94 Identities=12% Similarity=-0.026 Sum_probs=56.2
Q ss_pred HHHHHHHHHhCCCeeEEecC------CCCHHHHHHHHHHHh---ccCceEEEEEeec--ccHHHHHHHHHhcCCcEEEe-
Q psy437 47 CDSVAAALAQERINAISYHA------GLADKLRNEVQMKWI---SNKVHVGHWTVVS--KECDSVAAALAQERINAISY- 114 (184)
Q Consensus 47 ~e~la~~L~~~gi~~~~~hg------~l~~~~R~~~~~~f~---~g~~~vlVaT~tr--~~~e~~a~gL~~~gi~~~vi- 114 (184)
.+.+.++|.+.|+.-.+..| .|+.+||.++++... .|+++||+.|.+- .++-.+++.....|.++..+
T Consensus 24 l~~lv~~li~~Gv~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~~~gr~pviaGvg~~~t~~ai~la~~a~~~Gadavlv~ 103 (292)
T 2ojp_A 24 LKKLIDYHVASGTSAIVSVGTTGESATLNHDEHADVVMMTLDLADGRIPVIAGTGANATAEAISLTQRFNDSGIVGCLTV 103 (292)
T ss_dssp HHHHHHHHHHHTCCEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTSSCEEEECCCSSHHHHHHHHHHTTTSSCSEEEEE
T ss_pred HHHHHHHHHHcCCCEEEECccccchhhCCHHHHHHHHHHHHHHhCCCCcEEEecCCccHHHHHHHHHHHHhcCCCEEEEC
Confidence 34444555555655544444 377899999888876 4788898877653 34445566667778884322
Q ss_pred --eCCCCh--HHHHHHHHHhhCCCceEEEE
Q psy437 115 --HAGLAD--KLRNEVQMKWISNKVHLYNV 140 (184)
Q Consensus 115 --h~~~p~--~~r~~~~~~f~~~~~~v~va 140 (184)
.|..|. ....|....-..-.++|++.
T Consensus 104 ~P~y~~~s~~~l~~~f~~ia~a~~lPiilY 133 (292)
T 2ojp_A 104 TPYYNRPSQEGLYQHFKAIAEHTDLPQILY 133 (292)
T ss_dssp CCCSSCCCHHHHHHHHHHHHTTCSSCEEEE
T ss_pred CCCCCCCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 233332 23344445555556788876
No 292
>3h5o_A Transcriptional regulator GNTR; transcription regulator, GNTR,chromobacterium violaceum, PSI, SGX, DNA-binding; 2.30A {Chromobacterium violaceum}
Probab=59.56 E-value=58 Score=25.02 Aligned_cols=69 Identities=7% Similarity=0.037 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHhCCCeeEEecCCCCHHHHHHHHHHHhccCceEEEEEeecccHHHHHHHHHhcCCcEEEe
Q psy437 45 KECDSVAAALAQERINAISYHAGLADKLRNEVQMKWISNKVHVGHWTVVSKECDSVAAALAQERINAISY 114 (184)
Q Consensus 45 ~~~e~la~~L~~~gi~~~~~hg~l~~~~R~~~~~~f~~g~~~vlVaT~tr~~~e~~a~gL~~~gi~~~vi 114 (184)
...+-+.+.+.+.|+....+..+-+.+.-...++.+....+..||..+..... .....+...+++++++
T Consensus 79 ~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdGiIi~~~~~~~-~~~~~l~~~~iPvV~~ 147 (339)
T 3h5o_A 79 ETLTGIETVLDAAGYQMLIGNSHYDAGQELQLLRAYLQHRPDGVLITGLSHAE-PFERILSQHALPVVYM 147 (339)
T ss_dssp HHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHTTCCSEEEEECSCCCT-THHHHHHHTTCCEEEE
T ss_pred HHHHHHHHHHHHCCCEEEEEeCCCChHHHHHHHHHHHcCCCCEEEEeCCCCCH-HHHHHHhcCCCCEEEE
Confidence 34555566666778887777776666666677777777777776666543322 3344556667774444
No 293
>2rfg_A Dihydrodipicolinate synthase; beta barrel, amino-acid biosynthesis, diaminopimelate biosyn lyase, lysine biosynthesis, schiff base; 1.50A {Hahella chejuensis}
Probab=59.52 E-value=41 Score=26.10 Aligned_cols=94 Identities=11% Similarity=-0.024 Sum_probs=56.7
Q ss_pred HHHHHHHHHhCCCeeEEecC------CCCHHHHHHHHHHHh---ccCceEEEEEeec--ccHHHHHHHHHhcCCcEEEe-
Q psy437 47 CDSVAAALAQERINAISYHA------GLADKLRNEVQMKWI---SNKVHVGHWTVVS--KECDSVAAALAQERINAISY- 114 (184)
Q Consensus 47 ~e~la~~L~~~gi~~~~~hg------~l~~~~R~~~~~~f~---~g~~~vlVaT~tr--~~~e~~a~gL~~~gi~~~vi- 114 (184)
.+.+.++|.+.|+.-.+.-| .|+.+||.++++... .|+++||+.|.+- .++-.+++.....|.++..+
T Consensus 23 l~~lv~~li~~Gv~gi~v~GttGE~~~Ls~~Er~~v~~~~~~~~~grvpviaGvg~~~t~~ai~la~~A~~~Gadavlv~ 102 (297)
T 2rfg_A 23 LAGLVDWQIKHGAHGLVPVGTTGESPTLTEEEHKRVVALVAEQAQGRVPVIAGAGSNNPVEAVRYAQHAQQAGADAVLCV 102 (297)
T ss_dssp HHHHHHHHHHTTCSEEECSSGGGTGGGSCHHHHHHHHHHHHHHHTTSSCBEEECCCSSHHHHHHHHHHHHHHTCSEEEEC
T ss_pred HHHHHHHHHHcCCCEEEECccccchhhCCHHHHHHHHHHHHHHhCCCCeEEEccCCCCHHHHHHHHHHHHhcCCCEEEEc
Confidence 34455555555655544444 378899999888876 4778888877653 34445566667778884322
Q ss_pred --eCCCCh--HHHHHHHHHhhCCCceEEEE
Q psy437 115 --HAGLAD--KLRNEVQMKWISNKVHLYNV 140 (184)
Q Consensus 115 --h~~~p~--~~r~~~~~~f~~~~~~v~va 140 (184)
.|..|. ..-.|....-..-.++|++.
T Consensus 103 ~P~y~~~s~~~l~~~f~~va~a~~lPiilY 132 (297)
T 2rfg_A 103 AGYYNRPSQEGLYQHFKMVHDAIDIPIIVY 132 (297)
T ss_dssp CCTTTCCCHHHHHHHHHHHHHHCSSCEEEE
T ss_pred CCCCCCCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 232332 23344445555556788876
No 294
>3dz1_A Dihydrodipicolinate synthase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI2, structural genomics; 1.87A {Rhodopseudomonas palustris} SCOP: c.1.10.0
Probab=59.20 E-value=53 Score=25.69 Aligned_cols=94 Identities=10% Similarity=0.022 Sum_probs=55.3
Q ss_pred HHHHHHHHHhCCCeeEEecC------CCCHHHHHHHHHHHhc--cCceEEEEEeec--ccHHHHHHHHHhcCCcEEEe--
Q psy437 47 CDSVAAALAQERINAISYHA------GLADKLRNEVQMKWIS--NKVHVGHWTVVS--KECDSVAAALAQERINAISY-- 114 (184)
Q Consensus 47 ~e~la~~L~~~gi~~~~~hg------~l~~~~R~~~~~~f~~--g~~~vlVaT~tr--~~~e~~a~gL~~~gi~~~vi-- 114 (184)
.+.+.++|.+.|+.-.+.-| .|+.+||.++++...+ |+++||+.|.+- .++-.+++.....|.++..+
T Consensus 31 l~~lv~~li~~Gv~Gl~v~GtTGE~~~Lt~~Er~~v~~~~v~~~grvpViaGvg~~~t~~ai~la~~A~~~Gadavlv~~ 110 (313)
T 3dz1_A 31 IDRLTDFYAEVGCEGVTVLGILGEAPKLDAAEAEAVATRFIKRAKSMQVIVGVSAPGFAAMRRLARLSMDAGAAGVMIAP 110 (313)
T ss_dssp HHHHHHHHHHTTCSEEEESTGGGTGGGSCHHHHHHHHHHHHHHCTTSEEEEECCCSSHHHHHHHHHHHHHHTCSEEEECC
T ss_pred HHHHHHHHHHCCCCEEEeCccCcChhhCCHHHHHHHHHHHHHHcCCCcEEEecCCCCHHHHHHHHHHHHHcCCCEEEECC
Confidence 44455555555555444443 2788999998887764 688999887643 45555667777778885332
Q ss_pred eCCCCh--HHHHHHHHHhhCCC--ceEEEE
Q psy437 115 HAGLAD--KLRNEVQMKWISNK--VHLYNV 140 (184)
Q Consensus 115 h~~~p~--~~r~~~~~~f~~~~--~~v~va 140 (184)
-+..|. ....|....-..-. ++|++.
T Consensus 111 P~~~~s~~~l~~~f~~va~a~~~~lPiilY 140 (313)
T 3dz1_A 111 PPSLRTDEQITTYFRQATEAIGDDVPWVLQ 140 (313)
T ss_dssp CTTCCSHHHHHHHHHHHHHHHCTTSCEEEE
T ss_pred CCCCCCHHHHHHHHHHHHHhCCCCCcEEEE
Confidence 112232 23344444443333 888886
No 295
>3fkr_A L-2-keto-3-deoxyarabonate dehydratase; DHDPS/NAL family, complex, pyruvate, lyase; HET: KPI; 1.80A {Azospirillum brasilense} PDB: 3fkk_A
Probab=59.13 E-value=57 Score=25.48 Aligned_cols=94 Identities=9% Similarity=-0.018 Sum_probs=56.0
Q ss_pred HHHHHHHHHhCCCeeEEecC------CCCHHHHHHHHHHHh---ccCceEEEEEee--cccHHHHHHHHHhcCCcEEEee
Q psy437 47 CDSVAAALAQERINAISYHA------GLADKLRNEVQMKWI---SNKVHVGHWTVV--SKECDSVAAALAQERINAISYH 115 (184)
Q Consensus 47 ~e~la~~L~~~gi~~~~~hg------~l~~~~R~~~~~~f~---~g~~~vlVaT~t--r~~~e~~a~gL~~~gi~~~vih 115 (184)
.+.+.++|.+.|+.-.+.-| .|+.+||.++++... .|+++||+.|.+ -.++-.+++.....|.++..+-
T Consensus 31 l~~lv~~li~~Gv~gl~v~GtTGE~~~Ls~~Er~~v~~~~~~~~~grvpviaGvg~~~t~~ai~la~~A~~~Gadavlv~ 110 (309)
T 3fkr_A 31 QKRAVDFMIDAGSDGLCILANFSEQFAITDDERDVLTRTILEHVAGRVPVIVTTSHYSTQVCAARSLRAQQLGAAMVMAM 110 (309)
T ss_dssp HHHHHHHHHHTTCSCEEESSGGGTGGGSCHHHHHHHHHHHHHHHTTSSCEEEECCCSSHHHHHHHHHHHHHTTCSEEEEC
T ss_pred HHHHHHHHHHcCCCEEEECccccCcccCCHHHHHHHHHHHHHHhCCCCcEEEecCCchHHHHHHHHHHHHHcCCCEEEEc
Confidence 33444444455554444433 377899999888776 478899987764 3455566677777888853321
Q ss_pred ---C---CCC--hHHHHHHHHHhhCCCceEEEE
Q psy437 116 ---A---GLA--DKLRNEVQMKWISNKVHLYNV 140 (184)
Q Consensus 116 ---~---~~p--~~~r~~~~~~f~~~~~~v~va 140 (184)
| ..| .....|....-..-.++|++.
T Consensus 111 ~Pyy~~~~~~s~~~l~~~f~~va~a~~lPiilY 143 (309)
T 3fkr_A 111 PPYHGATFRVPEAQIFEFYARVSDAIAIPIMVQ 143 (309)
T ss_dssp CSCBTTTBCCCHHHHHHHHHHHHHHCSSCEEEE
T ss_pred CCCCccCCCCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 2 122 233445555555556777775
No 296
>3aay_A Putative thiosulfate sulfurtransferase; sulfurtranserase, structural genomics, PSI, structure initiative; 1.90A {Mycobacterium tuberculosis} PDB: 3aax_A 3hwi_A
Probab=59.01 E-value=13 Score=28.32 Aligned_cols=37 Identities=8% Similarity=-0.124 Sum_probs=27.9
Q ss_pred CCCcEEEEeccH-HHHHHHHHHHHhCCC-eeEEecCCCC
Q psy437 33 SGQSGIVYCLTR-KECDSVAAALAQERI-NAISYHAGLA 69 (184)
Q Consensus 33 ~~~~~IIf~~tr-~~~e~la~~L~~~gi-~~~~~hg~l~ 69 (184)
+..+.||||.+- ..+...+..|...|+ ++..+.||+.
T Consensus 76 ~~~~vvvyc~~g~~~s~~a~~~L~~~G~~~v~~l~GG~~ 114 (277)
T 3aay_A 76 NEDTVILYGGNNNWFAAYAYWYFKLYGHEKVKLLDGGRK 114 (277)
T ss_dssp TTSEEEEECSGGGHHHHHHHHHHHHTTCCSEEEETTHHH
T ss_pred CCCeEEEECCCCCchHHHHHHHHHHcCCCcEEEecCCHH
Confidence 345678899874 357788888999999 5778888753
No 297
>3brs_A Periplasmic binding protein/LACI transcriptional; structural genomics, protein structure initiative; 2.00A {Clostridium phytofermentans}
Probab=58.89 E-value=45 Score=24.72 Aligned_cols=25 Identities=12% Similarity=-0.000 Sum_probs=11.8
Q ss_pred cHHHHHHHHHhc-C-CcEEEeeCCCCh
Q psy437 96 ECDSVAAALAQE-R-INAISYHAGLAD 120 (184)
Q Consensus 96 ~~e~~a~gL~~~-g-i~~~vih~~~p~ 120 (184)
....+++.|-.. | .+-.++=++.+.
T Consensus 116 ~g~~~~~~L~~~~G~~~~i~~i~~~~~ 142 (289)
T 3brs_A 116 AGIRIGAVTKNLVRKSGKIGVISFVKN 142 (289)
T ss_dssp HHHHHHHHHHHHTSSSCEEEEEESCTT
T ss_pred HHHHHHHHHHHHcCCCceEEEEECCCC
Confidence 344555555543 4 554444444433
No 298
>2v9d_A YAGE; dihydrodipicolinic acid synthase, N-acetyl neuraminate lyase, NAL, lyase, DHDPS, prophage; 2.15A {Escherichia coli} PDB: 2v8z_A 3nev_A* 3n2x_A*
Probab=58.53 E-value=46 Score=26.48 Aligned_cols=95 Identities=13% Similarity=0.017 Sum_probs=62.3
Q ss_pred HHHHHHHHHHhCCCeeEEecCC------CCHHHHHHHHHHHh---ccCceEEEEEeec--ccHHHHHHHHHhcCCcEEEe
Q psy437 46 ECDSVAAALAQERINAISYHAG------LADKLRNEVQMKWI---SNKVHVGHWTVVS--KECDSVAAALAQERINAISY 114 (184)
Q Consensus 46 ~~e~la~~L~~~gi~~~~~hg~------l~~~~R~~~~~~f~---~g~~~vlVaT~tr--~~~e~~a~gL~~~gi~~~vi 114 (184)
..+.+.++|.+.|+.-.+.-|. |+.+||.++++... .|+++||+.|.+- .++-.+++.....|.++..+
T Consensus 53 ~l~~lv~~li~~Gv~Gl~v~GtTGE~~~Ls~eEr~~vi~~~ve~~~grvpViaGvg~~st~eai~la~~A~~~Gadavlv 132 (343)
T 2v9d_A 53 GTAALIDDLIKAGVDGLFFLGSGGEFSQLGAEERKAIARFAIDHVDRRVPVLIGTGGTNARETIELSQHAQQAGADGIVV 132 (343)
T ss_dssp HHHHHHHHHHHTTCSCEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTSSCEEEECCSSCHHHHHHHHHHHHHHTCSEEEE
T ss_pred HHHHHHHHHHHcCCCEEEeCccccChhhCCHHHHHHHHHHHHHHhCCCCcEEEecCCCCHHHHHHHHHHHHhcCCCEEEE
Confidence 4566777777788876666553 77899999988877 4788999887653 44555566677778884322
Q ss_pred ---eCCCCh--HHHHHHHHHhhCCCceEEEE
Q psy437 115 ---HAGLAD--KLRNEVQMKWISNKVHLYNV 140 (184)
Q Consensus 115 ---h~~~p~--~~r~~~~~~f~~~~~~v~va 140 (184)
.|..|. ....|....-..-.++|++.
T Consensus 133 ~~P~Y~~~s~~~l~~~f~~VA~a~~lPiilY 163 (343)
T 2v9d_A 133 INPYYWKVSEANLIRYFEQVADSVTLPVMLY 163 (343)
T ss_dssp ECCSSSCCCHHHHHHHHHHHHHTCSSCEEEE
T ss_pred CCCCCCCCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 233332 23445555555556788876
No 299
>4dik_A Flavoprotein; TM0755, electron transport, DI-iron protein; 1.75A {Thermotoga maritima} PDB: 4dil_A 1vme_A*
Probab=58.20 E-value=70 Score=26.06 Aligned_cols=86 Identities=10% Similarity=0.067 Sum_probs=49.7
Q ss_pred HHHHHHHHHHHHhCCCe-eEEecCCCCHHHHHHH---HHHHhccC---ceE-EEEEeec----ccHHHHHHHHHhcCCcE
Q psy437 44 RKECDSVAAALAQERIN-AISYHAGLADKLRNEV---QMKWISNK---VHV-GHWTVVS----KECDSVAAALAQERINA 111 (184)
Q Consensus 44 r~~~e~la~~L~~~gi~-~~~~hg~l~~~~R~~~---~~~f~~g~---~~v-lVaT~tr----~~~e~~a~gL~~~gi~~ 111 (184)
...+....+.+....++ .+.-||-.-.+.-.++ ..+|.+++ -+| |+|.+.- .+++.+|+||...|+.+
T Consensus 218 ~~~v~~~L~kl~~Ldi~~I~P~HGpi~r~~~~~ii~~Y~~w~~~~~~~~~v~I~Y~S~yGnTe~mA~~ia~gl~~~Gv~~ 297 (410)
T 4dik_A 218 KNYILEGAEKLSSLKIKALLPGHGLIWKKDPQRLLNHYVSVAKGDPKKGKVTVIYDSMYGFVENVMKKAIDSLKEKGFTP 297 (410)
T ss_dssp HHHHHHHHHHHHTSCCSEEEESSSCBBSSCHHHHHHHHHHHHHTCCCTTEEEEEEECSSSHHHHHHHHHHHHHHHTTCEE
T ss_pred HHHHHHHHHHHhCCCCCEEecCCcchhhcCHHHHHHHHHHhhcccccccceeeEEecccChHHHHHHHHHHHHHhcCCce
Confidence 33344444555555665 5668997654434444 44455432 244 5555543 56778888999999985
Q ss_pred EEee-CCCChHHHHHHHHH
Q psy437 112 ISYH-AGLADKLRNEVQMK 129 (184)
Q Consensus 112 ~vih-~~~p~~~r~~~~~~ 129 (184)
.++. .++.....+++...
T Consensus 298 ~~~~~~d~~~~~~s~i~~~ 316 (410)
T 4dik_A 298 VVYKFSDEERPAISEILKD 316 (410)
T ss_dssp EEEEECSSCCCCHHHHHHH
T ss_pred EEEEeccCCCCCHHHHHHH
Confidence 5443 35555555555554
No 300
>1gud_A ALBP, D-allose-binding periplasmic protein; periplasmic binding protein, X-RAY crystallography, hinge bending, conformational change; 1.7A {Escherichia coli} SCOP: c.93.1.1 PDB: 1gub_A 1rpj_A*
Probab=58.16 E-value=55 Score=24.39 Aligned_cols=72 Identities=4% Similarity=-0.074 Sum_probs=42.4
Q ss_pred HHHHHHHHhCCCeeEEec--CCCCHHHHHHHHHHHhccCceEEEEEeeccc-HHHHHHHHHhcCCcEEEeeCCCC
Q psy437 48 DSVAAALAQERINAISYH--AGLADKLRNEVQMKWISNKVHVGHWTVVSKE-CDSVAAALAQERINAISYHAGLA 119 (184)
Q Consensus 48 e~la~~L~~~gi~~~~~h--g~l~~~~R~~~~~~f~~g~~~vlVaT~tr~~-~e~~a~gL~~~gi~~~vih~~~p 119 (184)
.-+.+.+.+.|+.+.... +.-+.+.....++.+....+..||.+++... .......+...|++++++.-..+
T Consensus 21 ~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~vdgiIi~~~~~~~~~~~~~~~~~~~iPvV~~~~~~~ 95 (288)
T 1gud_A 21 KGIEDEAKTLGVSVDIFASPSEGDFQSQLQLFEDLSNKNYKGIAFAPLSSVNLVMPVARAWKKGIYLVNLDEKID 95 (288)
T ss_dssp HHHHHHHHHHTCCEEEEECSSTTCHHHHHHHHHHHHTSSEEEEEECCSSSSTTHHHHHHHHHTTCEEEEESSCCC
T ss_pred HHHHHHHHHcCCEEEEeCCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCChHHHHHHHHHHHHCCCeEEEECCCCC
Confidence 334455556688776665 5555555556677777777777776654322 22233445567888555655444
No 301
>3i2v_A Adenylyltransferase and sulfurtransferase MOCS3; rhodanese, UBA4, structural genomics, ubiquitin biology, structural genomics consortium, SGC; 1.25A {Homo sapiens}
Probab=58.13 E-value=8.6 Score=25.28 Aligned_cols=35 Identities=14% Similarity=0.122 Sum_probs=28.0
Q ss_pred cEEEEeccHHHHHHHHHHHHhC------CC-eeEEecCCCCH
Q psy437 36 SGIVYCLTRKECDSVAAALAQE------RI-NAISYHAGLAD 70 (184)
Q Consensus 36 ~~IIf~~tr~~~e~la~~L~~~------gi-~~~~~hg~l~~ 70 (184)
+.|+||.+-..+...+..|.+. |+ ++..+.||+..
T Consensus 74 ~ivv~C~~G~rs~~a~~~L~~~gg~~~~G~~~v~~l~GG~~~ 115 (127)
T 3i2v_A 74 PIYVICKLGNDSQKAVKILQSLSAAQELDPLTVRDVVGGLMA 115 (127)
T ss_dssp EEEEECSSSSHHHHHHHHHHHHHHTTSSSCEEEEEETTHHHH
T ss_pred eEEEEcCCCCcHHHHHHHHHHhhccccCCCceEEEecCCHHH
Confidence 7888999888888888999887 34 57788898653
No 302
>1rhs_A Sulfur-substituted rhodanese; transferase, sulfurtransferase; 1.36A {Bos taurus} SCOP: c.46.1.2 c.46.1.2 PDB: 1boh_A 1boi_A 1orb_A 2ora_A 1dp2_A* 1rhd_A
Probab=57.95 E-value=8 Score=29.92 Aligned_cols=48 Identities=15% Similarity=0.049 Sum_probs=35.2
Q ss_pred HHHHHHHHh--hcCCCcEEEEeccHHHHHHHHHHHHhCCCe-eEEecCCCC
Q psy437 22 KEVISLIKA--KYSGQSGIVYCLTRKECDSVAAALAQERIN-AISYHAGLA 69 (184)
Q Consensus 22 ~~L~~~l~~--~~~~~~~IIf~~tr~~~e~la~~L~~~gi~-~~~~hg~l~ 69 (184)
+.|...+.. ..+..+.|+||.+-..+...+..|...|++ +..|.||+.
T Consensus 226 ~~l~~~~~~~~~~~~~~ivv~C~sG~rs~~a~~~L~~~G~~~v~~~~GG~~ 276 (296)
T 1rhs_A 226 EELRAMFEAKKVDLTKPLIATCRKGVTACHIALAAYLCGKPDVAIYDGSWF 276 (296)
T ss_dssp HHHHHHHHHTTCCTTSCEEEECSSSSTHHHHHHHHHHTTCCCCEEESSHHH
T ss_pred HHHHHHHHHcCCCCCCCEEEECCcHHHHHHHHHHHHHcCCCCceeeCCcHH
Confidence 345555542 124567889999987788888899999996 888999864
No 303
>3gbv_A Putative LACI-family transcriptional regulator; NYSGXRC, PSI-II, 11231J, structur genomics, protein structure initiative; 2.20A {Bacteroides fragilis}
Probab=57.45 E-value=56 Score=24.26 Aligned_cols=73 Identities=11% Similarity=0.000 Sum_probs=44.1
Q ss_pred HHHHHHHHhC-CCeeEEe---cCCCCHHHHHHHHHHHhccCceEEEEEeecc-cHHHHHHHHHhcCCcEEEeeCCCCh
Q psy437 48 DSVAAALAQE-RINAISY---HAGLADKLRNEVQMKWISNKVHVGHWTVVSK-ECDSVAAALAQERINAISYHAGLAD 120 (184)
Q Consensus 48 e~la~~L~~~-gi~~~~~---hg~l~~~~R~~~~~~f~~g~~~vlVaT~tr~-~~e~~a~gL~~~gi~~~vih~~~p~ 120 (184)
.-+.+.+.+. |+.+... .+..+.+.-...++.+.+.++..||.++... ..+.....+...|++++.+....|.
T Consensus 29 ~gi~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiii~~~~~~~~~~~~~~~~~~~iPvV~~~~~~~~ 106 (304)
T 3gbv_A 29 KGIREAVTTYSDFNISANITHYDPYDYNSFVATSQAVIEEQPDGVMFAPTVPQYTKGFTDALNELGIPYIYIDSQIKD 106 (304)
T ss_dssp HHHHHHHHHTGGGCEEEEEEEECSSCHHHHHHHHHHHHTTCCSEEEECCSSGGGTHHHHHHHHHHTCCEEEESSCCTT
T ss_pred HHHHHHHHHHHhCCeEEEEEcCCCCCHHHHHHHHHHHHhcCCCEEEECCCChHHHHHHHHHHHHCCCeEEEEeCCCCC
Confidence 3344455555 6655443 2344555556677778887887777766543 2345556677778886667666554
No 304
>1urh_A 3-mercaptopyruvate sulfurtransferase; rhodanese; 2.8A {Escherichia coli} SCOP: c.46.1.2 c.46.1.2
Probab=57.29 E-value=8.6 Score=29.35 Aligned_cols=48 Identities=15% Similarity=0.018 Sum_probs=33.2
Q ss_pred HHHHHHHHhh--cCCCcEEEEeccHHH-HHHHHHHHHhCCC-eeEEecCCCC
Q psy437 22 KEVISLIKAK--YSGQSGIVYCLTRKE-CDSVAAALAQERI-NAISYHAGLA 69 (184)
Q Consensus 22 ~~L~~~l~~~--~~~~~~IIf~~tr~~-~e~la~~L~~~gi-~~~~~hg~l~ 69 (184)
..+...+... .+..+.||||.+-.. +...+..|...|+ ++..+.||+.
T Consensus 72 ~~~~~~~~~~gi~~~~~ivvyc~~g~~~a~~a~~~L~~~G~~~v~~l~GG~~ 123 (280)
T 1urh_A 72 ETFAVAMRELGVNQDKHLIVYDEGNLFSAPRAWWMLRTFGVEKVSILGGGLA 123 (280)
T ss_dssp HHHHHHHHHTTCCTTSEEEEECSSSCSSHHHHHHHHHHTTCSCEEEETTHHH
T ss_pred HHHHHHHHHcCCCCCCeEEEECCCCCccHHHHHHHHHHcCCCCEEEecCCHH
Confidence 3444444432 245668889987554 7788899999999 5888888854
No 305
>3h11_A CAsp8 and FADD-like apoptosis regulator; cell death, apoptosis, caspase, alternative splicing, HOST- virus interaction, polymorphism, cytoplasm, disease mutation; 1.90A {Homo sapiens} PDB: 3h13_A
Probab=57.27 E-value=6.1 Score=30.71 Aligned_cols=48 Identities=4% Similarity=-0.021 Sum_probs=41.3
Q ss_pred CCcEEEEeccHHHHHHHHHHHHhCCCeeEEecCCCCHHHHHHHHHHHhc
Q psy437 34 GQSGIVYCLTRKECDSVAAALAQERINAISYHAGLADKLRNEVQMKWIS 82 (184)
Q Consensus 34 ~~~~IIf~~tr~~~e~la~~L~~~gi~~~~~hg~l~~~~R~~~~~~f~~ 82 (184)
.+-+||++++-.+++.+.+.|...|+.+..+ -+++.++-...+++|..
T Consensus 43 rG~~LIinn~~~D~~~L~~~f~~LgF~V~~~-~dlt~~em~~~l~~~~~ 90 (272)
T 3h11_A 43 LGICLIIDCIGNETELLRDTFTSLGYEVQKF-LHLSMHGISQILGQFAC 90 (272)
T ss_dssp SEEEEEEESSCCCCSHHHHHHHHHTEEEEEE-ESCBHHHHHHHHHHHHT
T ss_pred ceEEEEECCchHHHHHHHHHHHHCCCEEEEe-eCCCHHHHHHHHHHHHh
Confidence 3458999999999999999999999987654 57899988899999875
No 306
>3rpe_A MDAB, modulator of drug activity B; structural genomics, center for structural genomics of infec diseases, csgid, flavodoxin-like fold; HET: FAD; 1.10A {Yersinia pestis}
Probab=56.93 E-value=26 Score=26.12 Aligned_cols=67 Identities=6% Similarity=-0.067 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHhCCCeeEEecCCCCHHHHHHHHHHHhccCceEEEEEeecccHHHHHHHHHhcCCcEEEeeCCCChHHHH
Q psy437 45 KECDSVAAALAQERINAISYHAGLADKLRNEVQMKWISNKVHVGHWTVVSKECDSVAAALAQERINAISYHAGLADKLRN 124 (184)
Q Consensus 45 ~~~e~la~~L~~~gi~~~~~hg~l~~~~R~~~~~~f~~g~~~vlVaT~tr~~~e~~a~gL~~~gi~~~vih~~~p~~~r~ 124 (184)
..++.+++.|.+.|..+...+=.-. .+-...++++..-+. ||+++| +|++++|...+.
T Consensus 47 ~L~~~~~~~l~~~g~ev~~~dL~~~-~Dv~~~~~~l~~aD~-iv~~~P--------------------~y~~~~p~~lK~ 104 (218)
T 3rpe_A 47 TLTNVAADFLRESGHQVKITTVDQG-YDIESEIENYLWADT-IIYQMP--------------------AWWMGEPWILKK 104 (218)
T ss_dssp HHHHHHHHHHHHTTCCEEEEEGGGC-CCHHHHHHHHHHCSE-EEEEEE--------------------CBTTBCCHHHHH
T ss_pred HHHHHHHHHHhhCCCEEEEEECCCc-cCHHHHHHHHHhCCE-EEEECC--------------------hHhccCCHHHHH
Confidence 4456666666666766554432111 122344555554333 455555 689999999999
Q ss_pred HHHHHhhCC
Q psy437 125 EVQMKWISN 133 (184)
Q Consensus 125 ~~~~~f~~~ 133 (184)
++-+.|..|
T Consensus 105 ~iD~v~~~g 113 (218)
T 3rpe_A 105 YIDEVFTDG 113 (218)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHhcC
Confidence 999986544
No 307
>3hjh_A Transcription-repair-coupling factor; MFD, mutation frequency decline, ATP-binding, DNA DAMA repair, DNA-binding, helicase, hydrolase; 1.95A {Escherichia coli} PDB: 2b2n_A* 4dfc_A
Probab=56.83 E-value=86 Score=26.21 Aligned_cols=71 Identities=7% Similarity=-0.045 Sum_probs=49.1
Q ss_pred hHHHHHHHHHhhcCCCcEEEEeccHHHHHHHHHHHHhC-CCeeEEecC-------CCC-----HHHHHHHHHHHhccCce
Q psy437 20 VLKEVISLIKAKYSGQSGIVYCLTRKECDSVAAALAQE-RINAISYHA-------GLA-----DKLRNEVQMKWISNKVH 86 (184)
Q Consensus 20 k~~~L~~~l~~~~~~~~~IIf~~tr~~~e~la~~L~~~-gi~~~~~hg-------~l~-----~~~R~~~~~~f~~g~~~ 86 (184)
|--.+..++.+ .+.+.+|.|++...|.+++..|... +-.+.+|=+ ..+ ..+|..++..+.+++..
T Consensus 27 ka~~~a~l~~~--~~~p~lvv~~~~~~A~~l~~~l~~~~~~~v~~fp~~e~lpyd~~~p~~~~~~~Rl~~l~~L~~~~~~ 104 (483)
T 3hjh_A 27 CATLVAEIAER--HAGPVVLIAPDMQNALRLHDEISQFTDQMVMNLADWETLPYDSFSPHQDIISSRLSTLYQLPTMQRG 104 (483)
T ss_dssp HHHHHHHHHHH--SSSCEEEEESSHHHHHHHHHHHHHTCSSCEEECCCCCSCTTCSSCCCHHHHHHHHHHHHHGGGCCSS
T ss_pred HHHHHHHHHHH--hCCCEEEEeCCHHHHHHHHHHHHhhCCCcEEEEeCcccccccccCCChHHHHHHHHHHHHHHhCCCC
Confidence 55556666644 4568999999999999999999863 223333221 122 14688899999888877
Q ss_pred EEEEEe
Q psy437 87 VGHWTV 92 (184)
Q Consensus 87 vlVaT~ 92 (184)
|+|+|.
T Consensus 105 ivv~sv 110 (483)
T 3hjh_A 105 VLIVPV 110 (483)
T ss_dssp EEEEEH
T ss_pred EEEEEH
Confidence 777765
No 308
>3g5j_A Putative ATP/GTP binding protein; N-terminal domain of ATP/GTP binding protein, PSI, MCSG, STR genomics, protein structure initiative; HET: PGE; 1.76A {Clostridium difficile}
Probab=56.70 E-value=11 Score=24.87 Aligned_cols=36 Identities=11% Similarity=0.137 Sum_probs=28.8
Q ss_pred ceEEEEEe-ecccHHHHHHHHHhcCCcEEEeeCCCCh
Q psy437 85 VHVGHWTV-VSKECDSVAAALAQERINAISYHAGLAD 120 (184)
Q Consensus 85 ~~vlVaT~-tr~~~e~~a~gL~~~gi~~~vih~~~p~ 120 (184)
.+|+|+|. +-..+..+|..|...|+++.++.+|+..
T Consensus 90 ~~ivvyC~~~G~rs~~a~~~L~~~G~~v~~l~GG~~~ 126 (134)
T 3g5j_A 90 DNIVIYCARGGMRSGSIVNLLSSLGVNVYQLEGGYKA 126 (134)
T ss_dssp SEEEEECSSSSHHHHHHHHHHHHTTCCCEEETTHHHH
T ss_pred CeEEEEECCCChHHHHHHHHHHHcCCceEEEeCcHHH
Confidence 67889984 5556778899999999988888888654
No 309
>1jr2_A Uroporphyrinogen-III synthase; heme biosynthesis, HEAM biosynthesis, lyase; 1.84A {Homo sapiens} SCOP: c.113.1.1
Probab=56.33 E-value=11 Score=29.04 Aligned_cols=75 Identities=9% Similarity=0.056 Sum_probs=42.5
Q ss_pred hHHHHHHHHHhhcCCCcEEEEeccHHHHHHHHHHHHhCCCeeE---EecCCCCHHHHHHHHHHHhc-cCceEEEEEeec
Q psy437 20 VLKEVISLIKAKYSGQSGIVYCLTRKECDSVAAALAQERINAI---SYHAGLADKLRNEVQMKWIS-NKVHVGHWTVVS 94 (184)
Q Consensus 20 k~~~L~~~l~~~~~~~~~IIf~~tr~~~e~la~~L~~~gi~~~---~~hg~l~~~~R~~~~~~f~~-g~~~vlVaT~tr 94 (184)
.-+.|.+.+......++.|++.......+.+.+.|.+.|+.+. .|.-......-..+.+.+.. +...++++|++.
T Consensus 142 ~ae~L~~~l~~~~~~g~~vLi~rg~~~r~~L~~~L~~~G~~v~~~~~Y~~~~~~~~~~~~~~~l~~~~~~d~v~ftS~~ 220 (286)
T 1jr2_A 142 NAEKLAEYICSRESSALPLLFPCGNLKREILPKALKDKGIAMESITVYQTVAHPGIQGNLNSYYSQQGVPASITFFSPS 220 (286)
T ss_dssp SHHHHHHHHHTSCCCSSCEEEEESCGGGCCHHHHHHTTTCCEEEEECEEEEECTTHHHHHHHHHHHHCSCSEEEESSHH
T ss_pred CHHHHHHHHHhcccCCCeEEEECChhhHHHHHHHHHHCCCeeEEEEEEEEeeCCCcHHHHHHHHHhCCCCCEEEEEChH
Confidence 4566777775432223334444444456788999999887543 34322222222234444554 778889988854
No 310
>3clk_A Transcription regulator; 11017J, PSI-II, NYSGXRC, dimer, structural genomics, protein structure initiative; 2.08A {Lactobacillus plantarum WCFS1}
Probab=56.29 E-value=28 Score=26.02 Aligned_cols=19 Identities=16% Similarity=0.024 Sum_probs=11.1
Q ss_pred ccHHHHHHHHHhcCCcEEE
Q psy437 95 KECDSVAAALAQERINAIS 113 (184)
Q Consensus 95 ~~~e~~a~gL~~~gi~~~v 113 (184)
.....++..|-..|.+..+
T Consensus 111 ~~g~~a~~~L~~~G~~~i~ 129 (290)
T 3clk_A 111 DIGYQATNLLINEGHRQIG 129 (290)
T ss_dssp HHHHHHHHHHHTTTCCSEE
T ss_pred HHHHHHHHHHHHcCCCEEE
Confidence 4456666777666655333
No 311
>3qfe_A Putative dihydrodipicolinate synthase family PROT; seattle structural genomics center for infectious disease, S coccidioides, valley fever; 2.35A {Coccidioides immitis}
Probab=56.27 E-value=55 Score=25.70 Aligned_cols=94 Identities=9% Similarity=-0.056 Sum_probs=55.0
Q ss_pred HHHHHHHHHhCCCeeEEecC------CCCHHHHHHHHHHHh---ccCceEEEEEeec--ccHHHHHHHHHhcCCcEEEe-
Q psy437 47 CDSVAAALAQERINAISYHA------GLADKLRNEVQMKWI---SNKVHVGHWTVVS--KECDSVAAALAQERINAISY- 114 (184)
Q Consensus 47 ~e~la~~L~~~gi~~~~~hg------~l~~~~R~~~~~~f~---~g~~~vlVaT~tr--~~~e~~a~gL~~~gi~~~vi- 114 (184)
.+.+.++|.+.|+.-.+.-| .|+.+||.++++... .|+++||+.|.+- .++-.+++.....|.++..+
T Consensus 34 l~~lv~~li~~Gv~gl~v~GtTGE~~~Ls~~Er~~v~~~~~~~~~grvpviaGvg~~~t~~ai~la~~a~~~Gadavlv~ 113 (318)
T 3qfe_A 34 QERYYAYLARSGLTGLVILGTNAEAFLLTREERAQLIATARKAVGPDFPIMAGVGAHSTRQVLEHINDASVAGANYVLVL 113 (318)
T ss_dssp HHHHHHHHHTTTCSEEEESSGGGTGGGSCHHHHHHHHHHHHHHHCTTSCEEEECCCSSHHHHHHHHHHHHHHTCSEEEEC
T ss_pred HHHHHHHHHHcCCCEEEeCccccChhhCCHHHHHHHHHHHHHHhCCCCcEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEe
Confidence 34444455555555444433 278899999888776 4788888877643 44555566667778874322
Q ss_pred ---eCCCC---hHHHHHHHHHhhCCCceEEEE
Q psy437 115 ---HAGLA---DKLRNEVQMKWISNKVHLYNV 140 (184)
Q Consensus 115 ---h~~~p---~~~r~~~~~~f~~~~~~v~va 140 (184)
-+..| .....|.......-.++|++.
T Consensus 114 ~P~y~~kp~~~~~l~~~f~~ia~a~~lPiilY 145 (318)
T 3qfe_A 114 PPAYFGKATTPPVIKSFFDDVSCQSPLPVVIY 145 (318)
T ss_dssp CCCC---CCCHHHHHHHHHHHHHHCSSCEEEE
T ss_pred CCcccCCCCCHHHHHHHHHHHHhhCCCCEEEE
Confidence 22222 244556666655556777764
No 312
>3p45_A Caspase-6; protease, huntington'S disease, physio PH, competitive inhibition, hydrolase; 2.53A {Homo sapiens}
Probab=56.08 E-value=43 Score=24.19 Aligned_cols=48 Identities=4% Similarity=0.018 Sum_probs=39.1
Q ss_pred CCcEEEEecc--------------HHHHHHHHHHHHhCCCeeEEecCCCCHHHHHHHHHHHhc
Q psy437 34 GQSGIVYCLT--------------RKECDSVAAALAQERINAISYHAGLADKLRNEVQMKWIS 82 (184)
Q Consensus 34 ~~~~IIf~~t--------------r~~~e~la~~L~~~gi~~~~~hg~l~~~~R~~~~~~f~~ 82 (184)
.+-+|||++. ..+++.+.+.|...|+.+..+. +++.++-.+.+++|..
T Consensus 44 rG~aLIinn~~F~~~~~l~~R~Gt~~D~~~L~~~F~~LGF~V~~~~-dlt~~em~~~l~~~~~ 105 (179)
T 3p45_A 44 RGIALIFNHERFFWHLTLPERRGTCADRDNLTRRFSDLGFEVKCFN-DLKAEELLLKIHEVST 105 (179)
T ss_dssp CCEEEEEECCSCCGGGCCCCCTTHHHHHHHHHHHHHHTTCEEEEEE-SCCHHHHHHHHHHHHT
T ss_pred cCEEEEEeCcccCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEe-CCCHHHHHHHHHHHhh
Confidence 3558898874 3689999999999999987665 7898888888888865
No 313
>2hsg_A Glucose-resistance amylase regulator; CCPA, transcriptional regulator, transcription regulator; 2.50A {Bacillus megaterium} SCOP: a.35.1.5 c.93.1.1 PDB: 1rzr_G 2jcg_A 1zvv_A 3oqo_A* 3oqm_A* 3oqn_A*
Probab=55.69 E-value=46 Score=25.47 Aligned_cols=64 Identities=6% Similarity=-0.038 Sum_probs=26.3
Q ss_pred HHHHHhCCCeeEEecCCCCHHHHHHHHHHHhccCceEEEEEeecccHHHHHHHHHhcCCcEEEee
Q psy437 51 AAALAQERINAISYHAGLADKLRNEVQMKWISNKVHVGHWTVVSKECDSVAAALAQERINAISYH 115 (184)
Q Consensus 51 a~~L~~~gi~~~~~hg~l~~~~R~~~~~~f~~g~~~vlVaT~tr~~~e~~a~gL~~~gi~~~vih 115 (184)
.+.+.+.|+.+..+..+-+.+.-...++.+....+..||..+..... .....+...|++++++.
T Consensus 83 ~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~~-~~~~~l~~~~iPvV~~~ 146 (332)
T 2hsg_A 83 EDIATMYKYNIILSNSDQNQDKELHLLNNMLGKQVDGIIFMSGNVTE-EHVEELKKSPVPVVLAA 146 (332)
T ss_dssp HHHHHHHTCEEEEEECCSHHHHHHHHHHHTSCCSSCCEEECCSSCCH-HHHHHHTTSSSCEEEES
T ss_pred HHHHHHcCCEEEEEeCCCChHHHHHHHHHHHhCCCcEEEEecCCCCH-HHHHHHHhCCCCEEEEc
Confidence 33344445555444433333323334445554455544444332221 22233444555533333
No 314
>1fov_A Glutaredoxin 3, GRX3; active site disulfide, CIS Pro 53, electron transport; NMR {Escherichia coli} SCOP: c.47.1.1 PDB: 3grx_A*
Probab=55.60 E-value=29 Score=20.36 Aligned_cols=53 Identities=15% Similarity=0.043 Sum_probs=35.0
Q ss_pred EEEEe-ccHHHHHHHHHHHHhCCCeeEEecCCCCHHHHHHHHHHHhccCceEEE
Q psy437 37 GIVYC-LTRKECDSVAAALAQERINAISYHAGLADKLRNEVQMKWISNKVHVGH 89 (184)
Q Consensus 37 ~IIf~-~tr~~~e~la~~L~~~gi~~~~~hg~l~~~~R~~~~~~f~~g~~~vlV 89 (184)
.++|. +++..|..+...|.+.|++...+.-..++..+....+.+-.+.+++++
T Consensus 3 i~~y~~~~C~~C~~~~~~l~~~~i~~~~~~i~~~~~~~~~~~~~~~~~~vP~l~ 56 (82)
T 1fov_A 3 VEIYTKETCPYCHRAKALLSSKGVSFQELPIDGNAAKREEMIKRSGRTTVPQIF 56 (82)
T ss_dssp EEEEECSSCHHHHHHHHHHHHHTCCCEEEECTTCSHHHHHHHHHHSSCCSCEEE
T ss_pred EEEEECCCChhHHHHHHHHHHCCCCcEEEECCCCHHHHHHHHHHhCCCCcCEEE
Confidence 45564 567889999999988888776665554444455555555556677664
No 315
>3ijp_A DHPR, dihydrodipicolinate reductase; ssgcid, SBRI, decode biostructures, niaid, amino-acid biosynthesis, cytoplasm; HET: NAP; 2.30A {Bartonella henselae}
Probab=55.59 E-value=71 Score=24.84 Aligned_cols=80 Identities=15% Similarity=0.123 Sum_probs=50.1
Q ss_pred CcEEEEeccHHHHHHHHHHHHhCCCeeEEecCCCCHHHHHHHHHHHhccCceEEEEEeec-------ccHHHHHHHHHhc
Q psy437 35 QSGIVYCLTRKECDSVAAALAQERINAISYHAGLADKLRNEVQMKWISNKVHVGHWTVVS-------KECDSVAAALAQE 107 (184)
Q Consensus 35 ~~~IIf~~tr~~~e~la~~L~~~gi~~~~~hg~l~~~~R~~~~~~f~~g~~~vlVaT~tr-------~~~e~~a~gL~~~ 107 (184)
.-++|.+.+...+........+.|+++..-..|++.++..++. ++-+ +..++++.+-- +-++.+|+.|. +
T Consensus 89 aDVvIDFT~p~a~~~~~~~~l~~Gv~vViGTTG~~~e~~~~L~-~aa~-~~~~~~a~N~SiGv~ll~~l~~~aa~~l~-~ 165 (288)
T 3ijp_A 89 TEGILDFSQPQASVLYANYAAQKSLIHIIGTTGFSKTEEAQIA-DFAK-YTTIVKSGNMSLGVNLLANLVKRAAKALD-D 165 (288)
T ss_dssp CSEEEECSCHHHHHHHHHHHHHHTCEEEECCCCCCHHHHHHHH-HHHT-TSEEEECSCCCHHHHHHHHHHHHHHHHSC-T
T ss_pred CCEEEEcCCHHHHHHHHHHHHHcCCCEEEECCCCCHHHHHHHH-HHhC-cCCEEEECCCcHHHHHHHHHHHHHHHhcC-C
Confidence 4567756566666777777777899988877788876655444 4433 46665555533 34667777775 3
Q ss_pred CCcEE--EeeCC
Q psy437 108 RINAI--SYHAG 117 (184)
Q Consensus 108 gi~~~--vih~~ 117 (184)
+.++- =.|..
T Consensus 166 ~~dieIiE~HH~ 177 (288)
T 3ijp_A 166 DFDIEIYEMHHA 177 (288)
T ss_dssp TSEEEEEEEECT
T ss_pred CCCEEEEEccCC
Confidence 44433 35554
No 316
>2hmc_A AGR_L_411P, dihydrodipicolinate synthase; alpha-beta barrel (TIM barrel), structural genomics, PSI-2, structure initiative; HET: MSE; 1.90A {Agrobacterium tumefaciens str}
Probab=55.58 E-value=77 Score=25.24 Aligned_cols=97 Identities=10% Similarity=0.018 Sum_probs=61.1
Q ss_pred HHHHHHHHHhCCCeeEEecC------CCCHHHHHHHHHHHhccCceEEEEEeec--ccHHHHHHHHHhcCCcEEEe---e
Q psy437 47 CDSVAAALAQERINAISYHA------GLADKLRNEVQMKWISNKVHVGHWTVVS--KECDSVAAALAQERINAISY---H 115 (184)
Q Consensus 47 ~e~la~~L~~~gi~~~~~hg------~l~~~~R~~~~~~f~~g~~~vlVaT~tr--~~~e~~a~gL~~~gi~~~vi---h 115 (184)
.+.+.++|.+.|+.-.+.-| .|+.+||.++++....|+++||+.|.+- .++-.+++.....|.++..+ .
T Consensus 49 l~~lv~~li~~Gv~Gl~v~GtTGE~~~Ls~eEr~~vi~~~~~grvpViaGvg~~st~eai~la~~A~~~Gadavlv~~P~ 128 (344)
T 2hmc_A 49 LVRKGKELIADGMSAVVYCGSMGDWPLLTDEQRMEGVERLVKAGIPVIVGTGAVNTASAVAHAVHAQKVGAKGLMVIPRV 128 (344)
T ss_dssp HHHHHHHHHHTTCCCEEESSGGGTGGGSCHHHHHHHHHHHHHTTCCEEEECCCSSHHHHHHHHHHHHHHTCSEEEECCCC
T ss_pred HHHHHHHHHHcCCCEEEeCccCcChhhCCHHHHHHHHHHHhCCCCcEEEecCCCCHHHHHHHHHHHHhcCCCEEEECCCc
Confidence 55666666667776555554 3788999999888556889999888653 44555667777778885332 2
Q ss_pred CCC-C--hHHHHHHHHHhh-CCCceEEEEEecC
Q psy437 116 AGL-A--DKLRNEVQMKWI-SNKVHLYNVWKIQ 144 (184)
Q Consensus 116 ~~~-p--~~~r~~~~~~f~-~~~~~v~va~D~~ 144 (184)
|.. | .....|....-. .-.++|++ +++|
T Consensus 129 y~~~~s~~~l~~~f~~IA~aa~~lPiil-Yn~P 160 (344)
T 2hmc_A 129 LSRGSVIAAQKAHFKAILSAAPEIPAVI-YNSP 160 (344)
T ss_dssp SSSTTCHHHHHHHHHHHHHHSTTSCEEE-EEBG
T ss_pred cCCCCCHHHHHHHHHHHHhhCCCCcEEE-EecC
Confidence 322 2 233445555555 55677775 4554
No 317
>3eme_A Rhodanese-like domain protein; alpha-beta-alpha sandwich, structural genomics; 2.00A {Staphylococcus aureus subsp} PDB: 3iwh_A 3mzz_A
Probab=55.32 E-value=6.5 Score=25.12 Aligned_cols=37 Identities=14% Similarity=0.083 Sum_probs=29.9
Q ss_pred cCceEEEEEeecccHHHHHHHHHhcCCcEEEeeCCCC
Q psy437 83 NKVHVGHWTVVSKECDSVAAALAQERINAISYHAGLA 119 (184)
Q Consensus 83 g~~~vlVaT~tr~~~e~~a~gL~~~gi~~~vih~~~p 119 (184)
...+|+++|.+-.....+|..|...|+++.++.+|+.
T Consensus 55 ~~~~iv~yC~~g~rs~~a~~~L~~~G~~v~~l~GG~~ 91 (103)
T 3eme_A 55 KNEIYYIVCAGGVRSAKVVEYLEANGIDAVNVEGGMH 91 (103)
T ss_dssp TTSEEEEECSSSSHHHHHHHHHHTTTCEEEEETTHHH
T ss_pred CCCeEEEECCCChHHHHHHHHHHHCCCCeEEeCCCHH
Confidence 3457888888877888899999999998777877754
No 318
>2vc6_A MOSA, dihydrodipicolinate synthase; DHDPS, TIM barrel, schiff base, lyase; HET: MCL; 1.95A {Sinorhizobium meliloti}
Probab=55.26 E-value=70 Score=24.66 Aligned_cols=94 Identities=7% Similarity=-0.053 Sum_probs=56.9
Q ss_pred HHHHHHHHHhCCCeeEEecC------CCCHHHHHHHHHHHhc---cCceEEEEEeec--ccHHHHHHHHHhcCCcEEEe-
Q psy437 47 CDSVAAALAQERINAISYHA------GLADKLRNEVQMKWIS---NKVHVGHWTVVS--KECDSVAAALAQERINAISY- 114 (184)
Q Consensus 47 ~e~la~~L~~~gi~~~~~hg------~l~~~~R~~~~~~f~~---g~~~vlVaT~tr--~~~e~~a~gL~~~gi~~~vi- 114 (184)
.+.+.++|.+.|+.-.+..| .|+.+||.++++...+ |+++||+.|.+- .++-.+++.....|.++..+
T Consensus 23 l~~lv~~li~~Gv~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~~~gr~pviaGvg~~~t~~ai~la~~A~~~Gadavlv~ 102 (292)
T 2vc6_A 23 LHDLVEWQIEEGSFGLVPCGTTGESPTLSKSEHEQVVEITIKTANGRVPVIAGAGSNSTAEAIAFVRHAQNAGADGVLIV 102 (292)
T ss_dssp HHHHHHHHHHTTCSEEETTSGGGTGGGSCHHHHHHHHHHHHHHHTTSSCBEEECCCSSHHHHHHHHHHHHHTTCSEEEEE
T ss_pred HHHHHHHHHHcCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCCCCcEEEecCCccHHHHHHHHHHHHHcCCCEEEEc
Confidence 34455555555665555444 3788999998888764 778888777653 34445566667778885332
Q ss_pred --eCCCCh--HHHHHHHHHhhCCCceEEEE
Q psy437 115 --HAGLAD--KLRNEVQMKWISNKVHLYNV 140 (184)
Q Consensus 115 --h~~~p~--~~r~~~~~~f~~~~~~v~va 140 (184)
.|..|. ....|....-..-.++|++.
T Consensus 103 ~P~y~~~s~~~l~~~f~~ia~a~~lPiilY 132 (292)
T 2vc6_A 103 SPYYNKPTQEGIYQHFKAIDAASTIPIIVY 132 (292)
T ss_dssp CCCSSCCCHHHHHHHHHHHHHHCSSCEEEE
T ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCCEEEE
Confidence 232332 23344445555456788875
No 319
>1qtn_A Caspase-8; apoptosis, dithiane-DIOL, caspase, cysteine-protease, hydrol hydrolase inhibitor complex; 1.20A {Homo sapiens} SCOP: c.17.1.1 PDB: 3kjn_A* 3kjq_A* 2y1l_A 2c2z_A 1qdu_A* 1f9e_A*
Probab=55.15 E-value=53 Score=23.22 Aligned_cols=38 Identities=5% Similarity=0.063 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHhCCCeeEEecCCCCHHHHHHHHHHHhc
Q psy437 44 RKECDSVAAALAQERINAISYHAGLADKLRNEVQMKWIS 82 (184)
Q Consensus 44 r~~~e~la~~L~~~gi~~~~~hg~l~~~~R~~~~~~f~~ 82 (184)
..+++.+...|...|+.+.. +-+++.++-.+.+++|..
T Consensus 54 ~~D~~~L~~~f~~LgF~V~~-~~dlt~~em~~~l~~~~~ 91 (164)
T 1qtn_A 54 HLDAGALTTTFEELHFEIKP-HDDCTVEQIYEILKIYQL 91 (164)
T ss_dssp HHHHHHHHHHHHHTTCEEEE-EESCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCEEEE-ecCCCHHHHHHHHHHHHH
Confidence 57899999999999999865 557888888888888864
No 320
>1uar_A Rhodanese; sulfurtransferase, riken structural genomics/PROT initiative, RSGI, structural genomics, transferase; 1.70A {Thermus thermophilus} SCOP: c.46.1.2 c.46.1.2
Probab=55.02 E-value=16 Score=27.90 Aligned_cols=37 Identities=5% Similarity=-0.063 Sum_probs=28.7
Q ss_pred CCCcEEEEeccHH-HHHHHHHHHHhCCCe-eEEecCCCC
Q psy437 33 SGQSGIVYCLTRK-ECDSVAAALAQERIN-AISYHAGLA 69 (184)
Q Consensus 33 ~~~~~IIf~~tr~-~~e~la~~L~~~gi~-~~~~hg~l~ 69 (184)
+..+.|+||.+-. .+...+..|...|+. +..+.||+.
T Consensus 78 ~~~~ivvyc~~g~~~s~~a~~~L~~~G~~~v~~l~GG~~ 116 (285)
T 1uar_A 78 NDTTVVLYGDKNNWWAAYAFWFFKYNGHKDVRLMNGGRQ 116 (285)
T ss_dssp TTCEEEEECHHHHHHHHHHHHHHHHTTCSCEEEETTHHH
T ss_pred CCCeEEEECCCCCccHHHHHHHHHHcCCCCeEEecCCHH
Confidence 4566788998865 577888899999985 778888754
No 321
>3d7n_A Flavodoxin, WRBA-like protein; structural genomics, PSI, MCS protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens}
Probab=54.89 E-value=30 Score=24.72 Aligned_cols=17 Identities=12% Similarity=0.241 Sum_probs=10.2
Q ss_pred EeeCCCChHHHHHHHHH
Q psy437 113 SYHAGLADKLRNEVQMK 129 (184)
Q Consensus 113 vih~~~p~~~r~~~~~~ 129 (184)
+|.+++|...+.++.+.
T Consensus 64 ~y~g~~~~~~k~fld~~ 80 (193)
T 3d7n_A 64 TYMGGPSWQFKKFADAS 80 (193)
T ss_dssp EETTEECHHHHHHHHHT
T ss_pred ccCCCccHHHHHHHHHh
Confidence 34566666666666554
No 322
>3gyb_A Transcriptional regulators (LACI-family transcriptional regulatory protein); protein structure initiative II(PSI II), nysgxrc; 1.60A {Corynebacterium glutamicum}
Probab=54.88 E-value=20 Score=26.60 Aligned_cols=23 Identities=9% Similarity=-0.031 Sum_probs=11.1
Q ss_pred ccHHHHHHHHHhcCCcEEEeeCC
Q psy437 95 KECDSVAAALAQERINAISYHAG 117 (184)
Q Consensus 95 ~~~e~~a~gL~~~gi~~~vih~~ 117 (184)
.....+++.|-..|.+-.++=.+
T Consensus 104 ~~g~~a~~~L~~~G~~~i~~i~~ 126 (280)
T 3gyb_A 104 RGAEIATKHLIDLGHTHIAHLRV 126 (280)
T ss_dssp HHHHHHHHHHHHTTCCSEEEECC
T ss_pred HHHHHHHHHHHHCCCCeEEEEeC
Confidence 34455556665555553333333
No 323
>1ydg_A Trp repressor binding protein WRBA; tetramer, structural genomics, PSI, protein structure initiative; 2.00A {Deinococcus radiodurans} SCOP: c.23.5.8 PDB: 1yrh_A*
Probab=54.53 E-value=15 Score=26.48 Aligned_cols=24 Identities=8% Similarity=-0.136 Sum_probs=17.2
Q ss_pred ccHHHHHHHHHHHHhCCCeeEEec
Q psy437 42 LTRKECDSVAAALAQERINAISYH 65 (184)
Q Consensus 42 ~tr~~~e~la~~L~~~gi~~~~~h 65 (184)
+|+..++.+++.|.+.|..+..+.
T Consensus 19 ~T~~la~~i~~~l~~~g~~v~~~~ 42 (211)
T 1ydg_A 19 TGYAMAQEAAEAGRAAGAEVRLLK 42 (211)
T ss_dssp HHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred hHHHHHHHHHHHHhcCCCEEEEEe
Confidence 456777778888877787766654
No 324
>2ct6_A SH3 domain-binding glutamic acid-rich-like protein 2; SH3BGRL2,FASH3, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=54.50 E-value=16 Score=23.80 Aligned_cols=35 Identities=11% Similarity=0.095 Sum_probs=25.2
Q ss_pred HHHHHHHHHHhCCCeeEEecCCCCHHHHHHHHHHH
Q psy437 46 ECDSVAAALAQERINAISYHAGLADKLRNEVQMKW 80 (184)
Q Consensus 46 ~~e~la~~L~~~gi~~~~~hg~l~~~~R~~~~~~f 80 (184)
.++.+...|...+++...+.=..+++.+..+.+.+
T Consensus 26 ~~~~ak~~L~~~gi~y~~vdI~~~~~~~~~l~~~~ 60 (111)
T 2ct6_A 26 KQQDVVRFLEANKIEFEEVDITMSEEQRQWMYKNV 60 (111)
T ss_dssp HHHHHHHHHHHTTCCEEEEETTTCHHHHHHHHHSC
T ss_pred hHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHh
Confidence 33488999999999887777666666666665554
No 325
>4f3y_A DHPR, dihydrodipicolinate reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Burkholderia thailandensis}
Probab=54.41 E-value=68 Score=24.61 Aligned_cols=78 Identities=10% Similarity=0.068 Sum_probs=48.6
Q ss_pred cEEEEeccHHHHHHHHHHHHhCCCeeEEecCCCCHHHHHHHHHHHhccCceEEEEEeec--------ccHHHHHHHHHhc
Q psy437 36 SGIVYCLTRKECDSVAAALAQERINAISYHAGLADKLRNEVQMKWISNKVHVGHWTVVS--------KECDSVAAALAQE 107 (184)
Q Consensus 36 ~~IIf~~tr~~~e~la~~L~~~gi~~~~~hg~l~~~~R~~~~~~f~~g~~~vlVaT~tr--------~~~e~~a~gL~~~ 107 (184)
-++|.+.+...+........+.|+++..-..|++.++..++.+. -+ +..+++ ++.+ +-++.+|+.|. +
T Consensus 75 DVVIDfT~p~a~~~~~~~al~~G~~vVigTTG~s~~~~~~L~~a-a~-~~~vv~-a~N~s~Gv~l~~~~~~~aa~~l~-~ 150 (272)
T 4f3y_A 75 DYLIDFTLPEGTLVHLDAALRHDVKLVIGTTGFSEPQKAQLRAA-GE-KIALVF-SANMSVGVNVTMKLLEFAAKQFA-Q 150 (272)
T ss_dssp SEEEECSCHHHHHHHHHHHHHHTCEEEECCCCCCHHHHHHHHHH-TT-TSEEEE-CSCCCHHHHHHHHHHHHHHHHTS-S
T ss_pred CEEEEcCCHHHHHHHHHHHHHcCCCEEEECCCCCHHHHHHHHHH-hc-cCCEEE-ECCCCHHHHHHHHHHHHHHHhcC-c
Confidence 45665556666667777777889998887778887766554444 32 466544 4444 35667777775 3
Q ss_pred CCcE--EEeeCC
Q psy437 108 RINA--ISYHAG 117 (184)
Q Consensus 108 gi~~--~vih~~ 117 (184)
+.++ .=.|..
T Consensus 151 ~~diei~E~HH~ 162 (272)
T 4f3y_A 151 GYDIEIIEAHHR 162 (272)
T ss_dssp SCEEEEEEEECT
T ss_pred CCCEEEEEecCC
Confidence 4443 335654
No 326
>3od5_A Caspase-6; caspase domain, apoptotic protease, hydrolase-hydrolase INHI complex; 1.60A {Homo sapiens} SCOP: c.17.1.0 PDB: 3k7e_A 3s70_A 3v6m_A 3v6l_A 3nr2_A 4fxo_A 2wdp_A 3nkf_A 3s8e_A 4ejf_A 3qnw_A* 3p4u_A* 3p45_B 3qnw_B* 3p4u_B*
Probab=54.36 E-value=54 Score=25.24 Aligned_cols=48 Identities=4% Similarity=0.008 Sum_probs=39.0
Q ss_pred CCcEEEEecc--------------HHHHHHHHHHHHhCCCeeEEecCCCCHHHHHHHHHHHhc
Q psy437 34 GQSGIVYCLT--------------RKECDSVAAALAQERINAISYHAGLADKLRNEVQMKWIS 82 (184)
Q Consensus 34 ~~~~IIf~~t--------------r~~~e~la~~L~~~gi~~~~~hg~l~~~~R~~~~~~f~~ 82 (184)
.+-+||+++. ..+++.+.+.|+..|+.+..+ -+++.++-.+.+++|..
T Consensus 21 rg~aLIInn~~F~~~~~l~~R~Gt~~D~~~L~~~f~~LGF~V~~~-~dlt~~em~~~l~~~~~ 82 (278)
T 3od5_A 21 RGIALIFNHERFFWHLTLPERRGTCADRDNLTRRFSDLGFEVKCF-NDLKAEELLLKIHEVST 82 (278)
T ss_dssp CCEEEEEECCCCCGGGCCCCCTTHHHHHHHHHHHHHHTTCEEEEE-ESCCHHHHHHHHHHHHH
T ss_pred cCEEEEEeccccCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEe-cCCCHHHHHHHHHHHHh
Confidence 4557888774 478999999999999997654 58999888888888865
No 327
>3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide oxidoreductase class I, rhodan coenzyme A, flavin adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus anthracis} PDB: 3icr_A* 3ict_A*
Probab=53.96 E-value=6 Score=33.74 Aligned_cols=48 Identities=10% Similarity=0.088 Sum_probs=36.1
Q ss_pred HHHHHHHHhhcCCCcEEEEeccHHHHHHHHHHHHhCCCeeEEecCCCC
Q psy437 22 KEVISLIKAKYSGQSGIVYCLTRKECDSVAAALAQERINAISYHAGLA 69 (184)
Q Consensus 22 ~~L~~~l~~~~~~~~~IIf~~tr~~~e~la~~L~~~gi~~~~~hg~l~ 69 (184)
..|.+.+.+..+..+.++||.+-..+...+..|...|+.+..+.||+.
T Consensus 529 ~~l~~~~~~l~~~~~iv~~C~~g~rs~~a~~~l~~~G~~v~~l~GG~~ 576 (588)
T 3ics_A 529 DELRDRLEEVPVDKDIYITCQLGMRGYVAARMLMEKGYKVKNVDGGFK 576 (588)
T ss_dssp HHHTTCGGGSCSSSCEEEECSSSHHHHHHHHHHHHTTCCEEEETTHHH
T ss_pred HHHHHHHhhCCCCCeEEEECCCCcHHHHHHHHHHHcCCcEEEEcchHH
Confidence 344333433224567889999988899999999999999888889865
No 328
>3foj_A Uncharacterized protein; protein SSP1007, structural genomics, PSI-2, protein structure initiative; 1.60A {Staphylococcus saprophyticus subsp}
Probab=53.95 E-value=6.6 Score=24.97 Aligned_cols=37 Identities=16% Similarity=0.175 Sum_probs=29.9
Q ss_pred cCceEEEEEeecccHHHHHHHHHhcCCcEEEeeCCCC
Q psy437 83 NKVHVGHWTVVSKECDSVAAALAQERINAISYHAGLA 119 (184)
Q Consensus 83 g~~~vlVaT~tr~~~e~~a~gL~~~gi~~~vih~~~p 119 (184)
...+|+++|.+-.....+|..|...|+++.++.+|+.
T Consensus 55 ~~~~ivvyC~~g~rs~~a~~~L~~~G~~v~~l~GG~~ 91 (100)
T 3foj_A 55 DNETYYIICKAGGRSAQVVQYLEQNGVNAVNVEGGMD 91 (100)
T ss_dssp TTSEEEEECSSSHHHHHHHHHHHTTTCEEEEETTHHH
T ss_pred CCCcEEEEcCCCchHHHHHHHHHHCCCCEEEecccHH
Confidence 3457888888877788899999999998777877754
No 329
>2fzv_A Putative arsenical resistance protein; flavin binding protein, structural genomics, PSI, protein ST initiative; 1.70A {Shigella flexneri 2A} SCOP: c.23.5.4
Probab=53.93 E-value=74 Score=24.57 Aligned_cols=66 Identities=9% Similarity=0.012 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHhCCCeeEEecC-CCC---------HHHHHHHHHHHhccCceEEEEEeecccHHHHHHHHHhcCCcEEE
Q psy437 44 RKECDSVAAALAQERINAISYHA-GLA---------DKLRNEVQMKWISNKVHVGHWTVVSKECDSVAAALAQERINAIS 113 (184)
Q Consensus 44 r~~~e~la~~L~~~gi~~~~~hg-~l~---------~~~R~~~~~~f~~g~~~vlVaT~tr~~~e~~a~gL~~~gi~~~v 113 (184)
+..++.+++.+.+.|..+..++- +++ +..-..+.+++..-+. +|++|+ +
T Consensus 75 ~~La~~~~~~l~~~G~eveiidL~dlpl~~~d~~~~~d~v~~l~e~I~~ADg-iV~aSP--------------------~ 133 (279)
T 2fzv_A 75 RLAVEEAARLLQFFGAETRIFDPSDLPLPDQVQSDDHPAVKELRALSEWSEG-QVWCSP--------------------E 133 (279)
T ss_dssp HHHHHHHHHHHHHTTCEEEEBCCTTCCCTTTSGGGCCHHHHHHHHHHHHCSE-EEEEEE--------------------E
T ss_pred HHHHHHHHHHHhhCCCEEEEEehhcCCCCccCccCCCHHHHHHHHHHHHCCe-EEEEcC--------------------c
Confidence 45667777777777877766542 121 1222334444444332 555555 6
Q ss_pred eeCCCChHHHHHHHHHh
Q psy437 114 YHAGLADKLRNEVQMKW 130 (184)
Q Consensus 114 ih~~~p~~~r~~~~~~f 130 (184)
||+++|...++++-+.+
T Consensus 134 Yn~sipg~LKn~IDrl~ 150 (279)
T 2fzv_A 134 RHGQITSVMKAQIDHLP 150 (279)
T ss_dssp ETTEECHHHHHHHHHSC
T ss_pred cccCcCHHHHHHHHHHh
Confidence 78888888888887763
No 330
>2hpv_A FMN-dependent NADH-azoreductase; structural genomics, PS protein structure initiative, southeast collaboratory for S genomics, secsg; HET: FMN; 2.00A {Enterococcus faecalis}
Probab=53.68 E-value=58 Score=23.23 Aligned_cols=19 Identities=11% Similarity=0.197 Sum_probs=17.0
Q ss_pred EeeCCCChHHHHHHHHHhh
Q psy437 113 SYHAGLADKLRNEVQMKWI 131 (184)
Q Consensus 113 vih~~~p~~~r~~~~~~f~ 131 (184)
+|++++|...+.++-+.+.
T Consensus 104 ~y~~~~pa~lK~~iD~~~~ 122 (208)
T 2hpv_A 104 MWNLNVPTRLKAWVDTINV 122 (208)
T ss_dssp CBTTBCCHHHHHHHHHHCC
T ss_pred cccCCCCHHHHHHHHHHhc
Confidence 6899999999999999754
No 331
>2eg4_A Probable thiosulfate sulfurtransferase; structural genomics, NPPSFA, national Pro protein structural and functional analyses; 1.70A {Thermus thermophilus} PDB: 2eg3_A
Probab=53.50 E-value=21 Score=26.29 Aligned_cols=44 Identities=11% Similarity=-0.056 Sum_probs=31.7
Q ss_pred HHHHHHHhhcCCCcEEEEeccHH-HHHHHHHHHHhCCCe-eEEecCC
Q psy437 23 EVISLIKAKYSGQSGIVYCLTRK-ECDSVAAALAQERIN-AISYHAG 67 (184)
Q Consensus 23 ~L~~~l~~~~~~~~~IIf~~tr~-~~e~la~~L~~~gi~-~~~~hg~ 67 (184)
.+.+.+.......+.++||.+-. .+..++..|. .|+. +..+.||
T Consensus 50 ~~~~~~~~l~~~~~ivvyc~~g~~~s~~a~~~L~-~G~~~v~~l~GG 95 (230)
T 2eg4_A 50 GLTELFQTLGLRSPVVLYDEGLTSRLCRTAFFLG-LGGLEVQLWTEG 95 (230)
T ss_dssp HHHHHHHHTTCCSSEEEECSSSCHHHHHHHHHHH-HTTCCEEEECSS
T ss_pred HHHHHHHhcCCCCEEEEEcCCCCccHHHHHHHHH-cCCceEEEeCCC
Confidence 34444433223567888998866 7888899999 9995 7788888
No 332
>3hzu_A Thiosulfate sulfurtransferase SSEA; niaid, ssgcid, infectious disease, transferase structural genomics; 2.10A {Mycobacterium tuberculosis} PDB: 3p3a_A
Probab=53.48 E-value=16 Score=28.59 Aligned_cols=46 Identities=9% Similarity=0.010 Sum_probs=32.9
Q ss_pred HHHHHHHhh--cCCCcEEEEeccHH-HHHHHHHHHHhCCCe-eEEecCCC
Q psy437 23 EVISLIKAK--YSGQSGIVYCLTRK-ECDSVAAALAQERIN-AISYHAGL 68 (184)
Q Consensus 23 ~L~~~l~~~--~~~~~~IIf~~tr~-~~e~la~~L~~~gi~-~~~~hg~l 68 (184)
.+...+.+. .+..+.||||.+-. .+...+..|+..|+. +..+.||+
T Consensus 98 ~~~~~l~~lgi~~~~~vVvyc~~g~~~a~~a~~~L~~~G~~~V~~L~GG~ 147 (318)
T 3hzu_A 98 QFAELMDRKGIARDDTVVIYGDKSNWWAAYALWVFTLFGHADVRLLNGGR 147 (318)
T ss_dssp HHHHHHHHTTCCTTCEEEEECSGGGHHHHHHHHHHHHTTCSCEEEETTHH
T ss_pred HHHHHHHHcCCCCCCeEEEECCCCCccHHHHHHHHHHcCCCceEEccCCH
Confidence 445555432 24567888998765 678889999999995 77888875
No 333
>4g81_D Putative hexonate dehydrogenase; enzyme function initiative, EFI, structural genomics, dehydr oxidoreductase; 1.90A {Salmonella enterica subsp}
Probab=53.46 E-value=71 Score=24.18 Aligned_cols=69 Identities=12% Similarity=-0.004 Sum_probs=46.1
Q ss_pred HHHHHHHhhcCCCcEEEEeccHHHHHHHHHHHHhCCCeeEEecCCCCHH-HHHHHHHHHhc--cCceEEEEEee
Q psy437 23 EVISLIKAKYSGQSGIVYCLTRKECDSVAAALAQERINAISYHAGLADK-LRNEVQMKWIS--NKVHVGHWTVV 93 (184)
Q Consensus 23 ~L~~~l~~~~~~~~~IIf~~tr~~~e~la~~L~~~gi~~~~~hg~l~~~-~R~~~~~~f~~--g~~~vlVaT~t 93 (184)
.+...+.+ .+...++...+.+..+++++.|.+.|.++..+.++++.. +-....++..+ |.+.+||..-.
T Consensus 24 aia~~la~--~Ga~Vvi~~~~~~~~~~~~~~l~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~G~iDiLVNNAG 95 (255)
T 4g81_D 24 AYAEGLAA--AGARVILNDIRATLLAESVDTLTRKGYDAHGVAFDVTDELAIEAAFSKLDAEGIHVDILINNAG 95 (255)
T ss_dssp HHHHHHHH--TTCEEEECCSCHHHHHHHHHHHHHTTCCEEECCCCTTCHHHHHHHHHHHHHTTCCCCEEEECCC
T ss_pred HHHHHHHH--CCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEeeCCCHHHHHHHHHHHHHHCCCCcEEEECCC
Confidence 44445544 445555555666778888999998898999999998764 33444444443 68888887543
No 334
>3hly_A Flavodoxin-like domain; Q5MZP6_SYNP6, flavoprotein, DFA1, SNR135D, NESG, structural genomics, PSI-2; 2.40A {Synechococcus elongatus pcc 6301}
Probab=53.24 E-value=23 Score=24.63 Aligned_cols=24 Identities=4% Similarity=0.131 Sum_probs=14.0
Q ss_pred ccHHHHHHHHHHHHhCCCeeEEec
Q psy437 42 LTRKECDSVAAALAQERINAISYH 65 (184)
Q Consensus 42 ~tr~~~e~la~~L~~~gi~~~~~h 65 (184)
+|++.++.+++.|...|+.+..+.
T Consensus 13 nT~~~A~~ia~~l~~~g~~v~~~~ 36 (161)
T 3hly_A 13 YSDRLSQAIGRGLVKTGVAVEMVD 36 (161)
T ss_dssp THHHHHHHHHHHHHHTTCCEEEEE
T ss_pred HHHHHHHHHHHHHHhCCCeEEEEE
Confidence 455566666666666666555444
No 335
>1e0c_A Rhodanese, sulfurtransferase; sulfur metabolism, thiosulfate:cyanide sulfurtransferase; 1.8A {Azotobacter vinelandii} SCOP: c.46.1.2 c.46.1.2 PDB: 1h4k_X 1h4m_X
Probab=52.72 E-value=15 Score=27.81 Aligned_cols=37 Identities=14% Similarity=-0.053 Sum_probs=28.8
Q ss_pred CCCcEEEEeccHH-HHHHHHHHHHhCCCe-eEEecCCCC
Q psy437 33 SGQSGIVYCLTRK-ECDSVAAALAQERIN-AISYHAGLA 69 (184)
Q Consensus 33 ~~~~~IIf~~tr~-~~e~la~~L~~~gi~-~~~~hg~l~ 69 (184)
+..+.||||.+-. .+...+..|...|+. +..+.||+.
T Consensus 80 ~~~~vvvyc~~g~~~s~~a~~~L~~~G~~~v~~L~GG~~ 118 (271)
T 1e0c_A 80 PEAVYVVYDDEGGGWAGRFIWLLDVIGQQRYHYLNGGLT 118 (271)
T ss_dssp TTCEEEEECSSSSHHHHHHHHHHHHTTCCCEEEETTHHH
T ss_pred CCCeEEEEcCCCCccHHHHHHHHHHcCCCCeEEecCCHH
Confidence 4566788998765 678889999999995 777888854
No 336
>3o1i_D Periplasmic protein TORT; ligand free, two component sensor, periplasmic binding prote signaling protein; HET: PE4; 2.80A {Vibrio parahaemolyticus} PDB: 3o1h_B* 3o1j_C
Probab=52.31 E-value=50 Score=24.59 Aligned_cols=71 Identities=7% Similarity=-0.031 Sum_probs=46.7
Q ss_pred HHHHHHHHhCCCeeEEecCCC--CHHHHHHHHHHHhccCceEEEEEeeccc-HHHHHHHHHhcCCcEEEeeCCCC
Q psy437 48 DSVAAALAQERINAISYHAGL--ADKLRNEVQMKWISNKVHVGHWTVVSKE-CDSVAAALAQERINAISYHAGLA 119 (184)
Q Consensus 48 e~la~~L~~~gi~~~~~hg~l--~~~~R~~~~~~f~~g~~~vlVaT~tr~~-~e~~a~gL~~~gi~~~vih~~~p 119 (184)
.-+.+.+.+.|+.+..+..+- +.+.-...++.+.+..+..||.++.... +......+. .|++++++....+
T Consensus 25 ~g~~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~vdgiii~~~~~~~~~~~~~~~~-~~iPvV~~~~~~~ 98 (304)
T 3o1i_D 25 YGMVSEAEKQGVNLRVLEAGGYPNKSRQEQQLALCTQWGANAIILGTVDPHAYEHNLKSWV-GNTPVFATVNQLD 98 (304)
T ss_dssp HHHHHHHHHHTCEEEEEECSSTTCHHHHHHHHHHHHHHTCSEEEECCSSTTSSTTTHHHHT-TTSCEEECSSCCC
T ss_pred HHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCChhHHHHHHHHHc-CCCCEEEecCCCc
Confidence 344455556688888877766 6666677888888888887777665433 123345566 8999666655553
No 337
>2guk_A Hypothetical protein PG1857; alpha-beta, alpha-helical bundle, structural genomics, PSI, structure initiative; 1.91A {Porphyromonas gingivalis} SCOP: d.360.1.1
Probab=52.28 E-value=34 Score=23.05 Aligned_cols=38 Identities=8% Similarity=-0.017 Sum_probs=32.4
Q ss_pred HHHHhccCceEEEEEeecccHHHHHHHHHhcCCcEEEee
Q psy437 77 QMKWISNKVHVGHWTVVSKECDSVAAALAQERINAISYH 115 (184)
Q Consensus 77 ~~~f~~g~~~vlVaT~tr~~~e~~a~gL~~~gi~~~vih 115 (184)
+-+|.+|--+.+.+|-+++..+.+-..|...||+ ..+|
T Consensus 20 IYEy~KGvR~LvL~T~~~~~~~~~~~rL~~~~I~-Y~iq 57 (120)
T 2guk_A 20 IYEFEKGVRSMVLATLANDDIPYAEERLRSRQIP-YFAQ 57 (120)
T ss_dssp HHHHHHTSCSEEEEEEEGGGHHHHHHHHHHTTCC-EEEE
T ss_pred HHHHhhhhHHHHHHhcCHhhHHHHHHHHHhCCCC-EEEE
Confidence 4467788888999999999999999999999999 5554
No 338
>3mw8_A Uroporphyrinogen-III synthase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, lyase; 1.65A {Shewanella amazonensis}
Probab=52.28 E-value=4.4 Score=30.28 Aligned_cols=60 Identities=13% Similarity=0.081 Sum_probs=37.1
Q ss_pred CCcEEEEeccHHHHHHHHHHHHhCCCee---EEecCCCCHHHHHHHHHHHhccCceEEEEEeec
Q psy437 34 GQSGIVYCLTRKECDSVAAALAQERINA---ISYHAGLADKLRNEVQMKWISNKVHVGHWTVVS 94 (184)
Q Consensus 34 ~~~~IIf~~tr~~~e~la~~L~~~gi~~---~~~hg~l~~~~R~~~~~~f~~g~~~vlVaT~tr 94 (184)
+.+.++++ ....-+.+.+.|.+.|+.+ ..|.-...........+.+..++..++++|++.
T Consensus 120 g~~vL~~r-g~~~r~~l~~~L~~~G~~v~~~~~Y~~~~~~~~~~~~~~~l~~~~~d~v~ftS~s 182 (240)
T 3mw8_A 120 GKQIVIVR-GKGGREAMADGLRLRGANVSYLEVYQRACPPLDAPASVSRWQSFGIDTIVVTSGE 182 (240)
T ss_dssp TCEEEEEE-ESSSCCHHHHHHHHTTCEEEEEEEEEEECCCCCHHHHHHHHHHHTCCEEECCSHH
T ss_pred CCEEEEEe-CCCcHHHHHHHHHHCCCEEEEEEEEEeeCCCCCHHHHHHHHHhCCCCEEEEcCHH
Confidence 33444444 4444578888898888763 445543333334445666777788888888854
No 339
>3lcm_A SMU.1420, putative oxidoreductase; NADPH:quinone oxidoreductase, MDAB; HET: FAD NAP; 1.80A {Streptococcus mutans} PDB: 4f8y_A*
Probab=52.08 E-value=43 Score=24.02 Aligned_cols=20 Identities=10% Similarity=0.360 Sum_probs=17.5
Q ss_pred EeeCCCChHHHHHHHHHhhC
Q psy437 113 SYHAGLADKLRNEVQMKWIS 132 (184)
Q Consensus 113 vih~~~p~~~r~~~~~~f~~ 132 (184)
+|++++|...+.++-+.++.
T Consensus 83 ~y~~~~pa~LK~~iD~v~~~ 102 (196)
T 3lcm_A 83 IWWSGMPAILKGFIDRVFVA 102 (196)
T ss_dssp CBTTBCCHHHHHHHHHHSCB
T ss_pred hhhccccHHHHHHHHHHccC
Confidence 68999999999999998643
No 340
>4dpp_A DHDPS 2, dihydrodipicolinate synthase 2, chloroplastic; amino-acid biosynthesis, (S)-lysine biosynthesis VIA DAP PAT (beta/alpha)8-barrel; 2.00A {Arabidopsis thaliana} PDB: 4dpq_A* 3tuu_A*
Probab=51.58 E-value=93 Score=25.03 Aligned_cols=94 Identities=9% Similarity=-0.114 Sum_probs=60.1
Q ss_pred HHHHHHHHHHHhCCCeeEEecCC------CCHHHHHHHHHHHh---ccCceEEEEEeec--ccHHHHHHHHHhcCCcEEE
Q psy437 45 KECDSVAAALAQERINAISYHAG------LADKLRNEVQMKWI---SNKVHVGHWTVVS--KECDSVAAALAQERINAIS 113 (184)
Q Consensus 45 ~~~e~la~~L~~~gi~~~~~hg~------l~~~~R~~~~~~f~---~g~~~vlVaT~tr--~~~e~~a~gL~~~gi~~~v 113 (184)
+..+.+.++|.+.|+.-.+.-|. |+.+||.++++... .|+++||+.|.+- .++-.+++.....|.++..
T Consensus 80 ~al~~lv~~li~~Gv~Gl~v~GTTGE~~~Ls~eEr~~vi~~~ve~~~grvpViaGvg~~st~eai~la~~A~~~Gadavl 159 (360)
T 4dpp_A 80 EAYDDLVNIQIQNGAEGVIVGGTTGEGQLMSWDEHIMLIGHTVNCFGGSIKVIGNTGSNSTREAIHATEQGFAVGMHAAL 159 (360)
T ss_dssp HHHHHHHHHHHHTTCCEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTTSEEEEECCCSSHHHHHHHHHHHHHTTCSEEE
T ss_pred HHHHHHHHHHHHcCCCEEEecccccChhhCCHHHHHHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHHHHHHcCCCEEE
Confidence 45667778888889887776663 67899999988776 4788999877643 4555556777778887533
Q ss_pred e---eCCCChHHH--HHHHHHhhCCCceEEEE
Q psy437 114 Y---HAGLADKLR--NEVQMKWISNKVHLYNV 140 (184)
Q Consensus 114 i---h~~~p~~~r--~~~~~~f~~~~~~v~va 140 (184)
+ .|..|.... .|...... .++|++.
T Consensus 160 vv~PyY~k~sq~gl~~hf~~IA~--a~PiilY 189 (360)
T 4dpp_A 160 HINPYYGKTSIEGLIAHFQSVLH--MGPTIIY 189 (360)
T ss_dssp EECCCSSCCCHHHHHHHHHTTGG--GSCEEEE
T ss_pred EcCCCCCCCCHHHHHHHHHHHHH--hCCEEEE
Confidence 2 344443333 33333333 2576665
No 341
>3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA, persulfide reductase, rhodanese; HET: COA FAD; 1.99A {Shewanella loihica} PDB: 3nta_A* 3nt6_A*
Probab=51.57 E-value=9.9 Score=32.03 Aligned_cols=37 Identities=11% Similarity=0.103 Sum_probs=32.0
Q ss_pred CCCcEEEEeccHHHHHHHHHHHHhCCCeeEEecCCCC
Q psy437 33 SGQSGIVYCLTRKECDSVAAALAQERINAISYHAGLA 69 (184)
Q Consensus 33 ~~~~~IIf~~tr~~~e~la~~L~~~gi~~~~~hg~l~ 69 (184)
+..+.++||.+-..+...+..|.+.|+++..+.||+.
T Consensus 523 ~~~~iv~~c~~g~rs~~a~~~l~~~G~~v~~l~gG~~ 559 (565)
T 3ntd_A 523 KDKEIIIFSQVGLRGNVAYRQLVNNGYRARNLIGGYR 559 (565)
T ss_dssp TTSEEEEECSSSHHHHHHHHHHHHTTCCEEEETTHHH
T ss_pred CcCeEEEEeCCchHHHHHHHHHHHcCCCEEEEcChHH
Confidence 4456888999988899999999999998888999864
No 342
>1qpz_A PURA, protein (purine nucleotide synthesis repressor); transcription regulation, DNA-binding, purine biosynthesis; HET: DNA HPA; 2.50A {Escherichia coli} SCOP: a.35.1.5 c.93.1.1 PDB: 1bdi_A* 1qp0_A* 1qp4_A* 1pnr_A* 1wet_A* 1zay_A* 1vpw_A* 2pue_A* 2puf_A* 2pug_A* 1bdh_A* 1qp7_A* 1qqa_A* 1qqb_A* 2puc_A* 2pua_A* 2pub_A* 2pud_A* 1jfs_A* 1jh9_A* ...
Probab=51.42 E-value=80 Score=24.19 Aligned_cols=43 Identities=12% Similarity=-0.160 Sum_probs=22.4
Q ss_pred HHHHHHhCCCeeEEecCCCCHHHHHHHHHHHhccCceEEEEEe
Q psy437 50 VAAALAQERINAISYHAGLADKLRNEVQMKWISNKVHVGHWTV 92 (184)
Q Consensus 50 la~~L~~~gi~~~~~hg~l~~~~R~~~~~~f~~g~~~vlVaT~ 92 (184)
+.+.+.+.|+.+..+..+.+.+.-...++.+....+..||..+
T Consensus 80 i~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~ 122 (340)
T 1qpz_A 80 VEKNCFQKGYTLILGNAWNNLEKQRAYLSMMAQKRVDGLLVMC 122 (340)
T ss_dssp HHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEECC
T ss_pred HHHHHHHcCCEEEEEeCCCCHHHHHHHHHHHHcCCCCEEEEeC
Confidence 3344445566665555544444444455555555565555544
No 343
>1okg_A Possible 3-mercaptopyruvate sulfurtransferase; rhodanese, prolyl isomerase, catalytic triad, serine protease, leishmania pyruvate; HET: CSR; 2.10A {Leishmania major} SCOP: c.46.1.2 c.46.1.2 d.26.1.3
Probab=51.37 E-value=8.8 Score=31.05 Aligned_cols=38 Identities=11% Similarity=0.012 Sum_probs=31.5
Q ss_pred CCcEEEEeccHHHHHHHHHHHHhCCCe-eEEecCCCCHH
Q psy437 34 GQSGIVYCLTRKECDSVAAALAQERIN-AISYHAGLADK 71 (184)
Q Consensus 34 ~~~~IIf~~tr~~~e~la~~L~~~gi~-~~~~hg~l~~~ 71 (184)
..+.|+||.+-..+...+..|...|++ +..|.||+..-
T Consensus 246 d~~ivvyC~sG~rs~~a~~~L~~~G~~~v~~~~GG~~~W 284 (373)
T 1okg_A 246 LSSFVFSCGSGVTACINIALVHHLGLGHPYLYCGSWSEY 284 (373)
T ss_dssp CTTSEEECSSSSTHHHHHHHHHHTTSCCCEECSSHHHHH
T ss_pred CCCEEEECCchHHHHHHHHHHHHcCCCCeeEeCChHHHH
Confidence 567899999977778888899999995 88899997653
No 344
>3hs3_A Ribose operon repressor; PSI-II, NYSGXRC, periplasmic binding protein, structural genomics, protein structure initiative; 1.60A {Lactobacillus acidophilus}
Probab=51.36 E-value=29 Score=25.82 Aligned_cols=41 Identities=15% Similarity=0.107 Sum_probs=18.7
Q ss_pred HHHHhCCCe-eEEecCCCCHHHHHHHHHHHhccCceEEEEEe
Q psy437 52 AALAQERIN-AISYHAGLADKLRNEVQMKWISNKVHVGHWTV 92 (184)
Q Consensus 52 ~~L~~~gi~-~~~~hg~l~~~~R~~~~~~f~~g~~~vlVaT~ 92 (184)
+.+.+.|+. ...+.+.-+.+.-...++.+.+..+..||..+
T Consensus 34 ~~a~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~ 75 (277)
T 3hs3_A 34 EVIQKEGYTALISFSTNSDVKKYQNAIINFENNNVDGIITSA 75 (277)
T ss_dssp HHHHHTTCEEEEEECSSCCHHHHHHHHHHHHHTTCSEEEEEC
T ss_pred HHHHHCCCCEEEEEeCCCChHHHHHHHHHHHhCCCCEEEEcc
Confidence 333444555 44444444444444444555554444444433
No 345
>3h75_A Periplasmic sugar-binding domain protein; protein structure initiative II (PSI II), sugar binding PROT alpha/beta fold; 1.60A {Pseudomonas fluorescens pf-5}
Probab=51.18 E-value=81 Score=24.22 Aligned_cols=36 Identities=6% Similarity=-0.025 Sum_probs=27.0
Q ss_pred CCcEEEEeccHHHHHHHHHHHHhCCCeeEEecCCCC
Q psy437 34 GQSGIVYCLTRKECDSVAAALAQERINAISYHAGLA 69 (184)
Q Consensus 34 ~~~~IIf~~tr~~~e~la~~L~~~gi~~~~~hg~l~ 69 (184)
+.-+||++++......+.+.+.+.|+++..+....+
T Consensus 62 ~vDgiIi~~~~~~~~~~~~~~~~~giPvV~~~~~~~ 97 (350)
T 3h75_A 62 KPDYLMLVNEQYVAPQILRLSQGSGIKLFIVNSPLT 97 (350)
T ss_dssp CCSEEEEECCSSHHHHHHHHHTTSCCEEEEEESCCC
T ss_pred CCCEEEEeCchhhHHHHHHHHHhCCCcEEEEcCCCC
Confidence 466888887655667777888888999888776544
No 346
>3gk5_A Uncharacterized rhodanese-related protein TVG0868615; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.40A {Thermoplasma volcanium GSS1}
Probab=51.07 E-value=6.7 Score=25.43 Aligned_cols=37 Identities=11% Similarity=0.144 Sum_probs=29.9
Q ss_pred cCceEEEEEeecccHHHHHHHHHhcCCcEEEeeCCCC
Q psy437 83 NKVHVGHWTVVSKECDSVAAALAQERINAISYHAGLA 119 (184)
Q Consensus 83 g~~~vlVaT~tr~~~e~~a~gL~~~gi~~~vih~~~p 119 (184)
...+|+++|.+-.....+|..|...|+++.++.+|+.
T Consensus 54 ~~~~ivvyC~~G~rs~~aa~~L~~~G~~v~~l~GG~~ 90 (108)
T 3gk5_A 54 RDKKYAVICAHGNRSAAAVEFLSQLGLNIVDVEGGIQ 90 (108)
T ss_dssp TTSCEEEECSSSHHHHHHHHHHHTTTCCEEEETTHHH
T ss_pred CCCeEEEEcCCCcHHHHHHHHHHHcCCCEEEEcCcHH
Confidence 3457888888777788899999999998888888754
No 347
>3d0c_A Dihydrodipicolinate synthase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI-2, structural genomics; 1.90A {Oceanobacillus iheyensis HTE831}
Probab=51.02 E-value=86 Score=24.47 Aligned_cols=93 Identities=9% Similarity=-0.071 Sum_probs=58.6
Q ss_pred HHHHHHHHHhCCCeeEEecC------CCCHHHHHHHHHHHh---ccCceEEEEEeeccc--HHHHHHHHHhcCCcEEEe-
Q psy437 47 CDSVAAALAQERINAISYHA------GLADKLRNEVQMKWI---SNKVHVGHWTVVSKE--CDSVAAALAQERINAISY- 114 (184)
Q Consensus 47 ~e~la~~L~~~gi~~~~~hg------~l~~~~R~~~~~~f~---~g~~~vlVaT~tr~~--~e~~a~gL~~~gi~~~vi- 114 (184)
.+.+.++|.+.|+...+.-| .|+.+||.++++... .|+++||+.|.+ .. +-.+++.....|.++..+
T Consensus 35 l~~lv~~li~~Gv~gl~v~GtTGE~~~Ls~eEr~~vi~~~~~~~~grvpViaGvg~-st~~ai~la~~A~~~Gadavlv~ 113 (314)
T 3d0c_A 35 LDDNVEFLLQNGIEVIVPNGNTGEFYALTIEEAKQVATRVTELVNGRATVVAGIGY-SVDTAIELGKSAIDSGADCVMIH 113 (314)
T ss_dssp HHHHHHHHHHTTCSEECTTSGGGTGGGSCHHHHHHHHHHHHHHHTTSSEEEEEECS-SHHHHHHHHHHHHHTTCSEEEEC
T ss_pred HHHHHHHHHHcCCCEEEECcccCChhhCCHHHHHHHHHHHHHHhCCCCeEEecCCc-CHHHHHHHHHHHHHcCCCEEEEC
Confidence 55666777777777666555 478899999988877 478999988886 43 333456667778885322
Q ss_pred --eCCCCh--HHHHHHHHHhhCCCceEEEE
Q psy437 115 --HAGLAD--KLRNEVQMKWISNKVHLYNV 140 (184)
Q Consensus 115 --h~~~p~--~~r~~~~~~f~~~~~~v~va 140 (184)
.|..|. ....|....-..-.++|++.
T Consensus 114 ~P~y~~~s~~~l~~~f~~va~a~~lPiilY 143 (314)
T 3d0c_A 114 QPVHPYITDAGAVEYYRNIIEALDAPSIIY 143 (314)
T ss_dssp CCCCSCCCHHHHHHHHHHHHHHSSSCEEEE
T ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCCEEEE
Confidence 232332 23344444444445777664
No 348
>3olh_A MST, 3-mercaptopyruvate sulfurtransferase; structural genomics, structural genomics consortium, SGC, RH fold; 2.50A {Homo sapiens}
Probab=50.96 E-value=6.4 Score=30.73 Aligned_cols=49 Identities=14% Similarity=0.106 Sum_probs=35.1
Q ss_pred HHHHHHHHhh--cCCCcEEEEeccHHHHHHHHHHHHhCCC-eeEEecCCCCH
Q psy437 22 KEVISLIKAK--YSGQSGIVYCLTRKECDSVAAALAQERI-NAISYHAGLAD 70 (184)
Q Consensus 22 ~~L~~~l~~~--~~~~~~IIf~~tr~~~e~la~~L~~~gi-~~~~~hg~l~~ 70 (184)
+.|.+.+.+. .+..+.|+||.+-..+...+..|...|+ ++..|.||+..
T Consensus 240 ~~l~~~~~~~~~~~~~~iv~yC~sG~rs~~a~~~L~~~G~~~v~~~~Gg~~~ 291 (302)
T 3olh_A 240 EEIRHLFQEKKVDLSKPLVATCGSGVTACHVALGAYLCGKPDVPIYDGSWVE 291 (302)
T ss_dssp HHHHHHHHHTTCCTTSCEEEECSSSSTTHHHHHHHHTTTCCCCCEESSHHHH
T ss_pred HHHHHHHHhcCCCCCCCEEEECCChHHHHHHHHHHHHcCCCCeeEeCCcHHH
Confidence 4455555431 2346788899987777788888999999 57888888653
No 349
>4gi5_A Quinone reductase; protein structure initiative, FAD bound, structural genomics, PSI-biology; HET: FAD; 1.75A {Klebsiella pneumoniae subsp}
Probab=50.71 E-value=84 Score=24.24 Aligned_cols=22 Identities=0% Similarity=0.003 Sum_probs=18.8
Q ss_pred EEeeCCCChHHHHHHHHHhhCC
Q psy437 112 ISYHAGLADKLRNEVQMKWISN 133 (184)
Q Consensus 112 ~vih~~~p~~~r~~~~~~f~~~ 133 (184)
=++++++|...+.|+-|.|..|
T Consensus 121 P~~w~~~Pa~lK~~iDrv~~~g 142 (280)
T 4gi5_A 121 PLWWFSMPAIMKGWIDRVYAWG 142 (280)
T ss_dssp ECBTTBCCHHHHHHHHHHSCBT
T ss_pred ccccccCcHHHHHHHHHhcccC
Confidence 4789999999999999997543
No 350
>4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold, oxidoreductase; HET: NAD; 1.75A {Sulfolobus acidocaldarius}
Probab=50.50 E-value=79 Score=23.88 Aligned_cols=35 Identities=9% Similarity=0.097 Sum_probs=16.9
Q ss_pred eEEEEEeecccHHHHHHHHHhcCCcEEEeeCCCCh
Q psy437 86 HVGHWTVVSKECDSVAAALAQERINAISYHAGLAD 120 (184)
Q Consensus 86 ~vlVaT~tr~~~e~~a~gL~~~gi~~~vih~~~p~ 120 (184)
+|+++-......+.++..+...|.++..+.+|+..
T Consensus 33 ~Vv~~~~~~~~~~~~~~~i~~~g~~~~~~~~Dvt~ 67 (254)
T 4fn4_A 33 IVVAVELLEDRLNQIVQELRGMGKEVLGVKADVSK 67 (254)
T ss_dssp EEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTS
T ss_pred EEEEEECCHHHHHHHHHHHHhcCCcEEEEEccCCC
Confidence 33333333334445555555555555555555544
No 351
>3hgt_A HDA1 complex subunit 3; RECA-like domain, SWI2/SNF2 helical domain, chromatin regulator, coiled coil, nucleus, repressor, transcription; 2.20A {Saccharomyces cerevisiae} PDB: 3hgq_A
Probab=50.32 E-value=27 Score=27.84 Aligned_cols=52 Identities=13% Similarity=0.180 Sum_probs=41.0
Q ss_pred ChHHHHHHHHHhhc-CCCcEEEEeccHHHHHHHHHHHHhCCCeeEEecCCCCH
Q psy437 19 NVLKEVISLIKAKY-SGQSGIVYCLTRKECDSVAAALAQERINAISYHAGLAD 70 (184)
Q Consensus 19 ~k~~~L~~~l~~~~-~~~~~IIf~~tr~~~e~la~~L~~~gi~~~~~hg~l~~ 70 (184)
.|+..|-++|.... .+.+++||++..+..+-+..+|...|++..-+.|....
T Consensus 109 GKf~~L~~LL~~l~~~~~kVLIfsq~t~~LDilE~~l~~~~~~y~RlDG~~~~ 161 (328)
T 3hgt_A 109 GKFSVLRDLINLVQEYETETAIVCRPGRTMDLLEALLLGNKVHIKRYDGHSIK 161 (328)
T ss_dssp HHHHHHHHHHHHHTTSCEEEEEEECSTHHHHHHHHHHTTSSCEEEESSSCCC-
T ss_pred ccHHHHHHHHHHHHhCCCEEEEEECChhHHHHHHHHHhcCCCceEeCCCCchh
Confidence 47777766665431 45679999999999999999999999999999998443
No 352
>3qk7_A Transcriptional regulators; structural genomics, NEW YORK structural genomix research CO NYSGXRC, PSI-2, protein structur initiative; 2.70A {Yersinia pestis}
Probab=50.24 E-value=49 Score=24.81 Aligned_cols=61 Identities=7% Similarity=-0.098 Sum_probs=32.4
Q ss_pred HHHHHHHHhCCCeeEEecCCCCHHHHHHHHHHHhccCceEE-------------EEEeecccHHHHHHHHHhcCCcE
Q psy437 48 DSVAAALAQERINAISYHAGLADKLRNEVQMKWISNKVHVG-------------HWTVVSKECDSVAAALAQERINA 111 (184)
Q Consensus 48 e~la~~L~~~gi~~~~~hg~l~~~~R~~~~~~f~~g~~~vl-------------VaT~tr~~~e~~a~gL~~~gi~~ 111 (184)
..+.+.|...++....+.+..... ..++.+....++++ |.++.......+++.|-..|.+-
T Consensus 55 ~~~~~~l~~~~vdGiIi~~~~~~~---~~~~~l~~~~iPvV~~~~~~~~~~~~~V~~D~~~~~~~a~~~L~~~G~~~ 128 (294)
T 3qk7_A 55 QSLIHLVETRRVDALIVAHTQPED---FRLQYLQKQNFPFLALGRSHLPKPYAWFDFDNHAGASLAVKRLLELGHQR 128 (294)
T ss_dssp HHHHHHHHHTCCSEEEECSCCSSC---HHHHHHHHTTCCEEEESCCCCSSCCEEEEECHHHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHcCCCCEEEEeCCCCCh---HHHHHHHhCCCCEEEECCCCCCCCCCEEEcChHHHHHHHHHHHHHCCCce
Confidence 345566666666655554432222 33444444444443 33444456677778887777663
No 353
>1t0i_A YLR011WP; FMN binding protein, flavodoxin, azoreductase, oxidoreductase; HET: FMN; 2.00A {Saccharomyces cerevisiae} SCOP: c.23.5.4
Probab=50.22 E-value=63 Score=22.65 Aligned_cols=35 Identities=14% Similarity=0.106 Sum_probs=20.6
Q ss_pred HHHHHHHhccCceEEEEEeecccHHHHHHHHHhcCCcEEEeeCCCChHHHHHHHHH
Q psy437 74 NEVQMKWISNKVHVGHWTVVSKECDSVAAALAQERINAISYHAGLADKLRNEVQMK 129 (184)
Q Consensus 74 ~~~~~~f~~g~~~vlVaT~tr~~~e~~a~gL~~~gi~~~vih~~~p~~~r~~~~~~ 129 (184)
....+++.+-+. +|++|| +|++++|...+.++-+.
T Consensus 76 ~~~~~~l~~aD~-iI~~sP--------------------~y~~~~p~~lK~~iD~~ 110 (191)
T 1t0i_A 76 RSWSRIVNALDI-IVFVTP--------------------QYNWGYPAALKNAIDRL 110 (191)
T ss_dssp HHHHHHHHTCSE-EEEEEE--------------------CBTTBCCHHHHHHHHTC
T ss_pred HHHHHHHHhCCE-EEEEec--------------------eECCCCCHHHHHHHHHH
Confidence 345556655443 666666 45666666666666654
No 354
>3r6w_A FMN-dependent NADH-azoreductase 1; nitrofurazone, P. aeruginosa, nitroreductase, flavodoxin, oxidoreductase; HET: FMN NFZ; 2.08A {Pseudomonas aeruginosa} PDB: 3lt5_A* 2v9c_A* 3keg_A*
Probab=50.19 E-value=60 Score=23.35 Aligned_cols=21 Identities=10% Similarity=0.058 Sum_probs=18.2
Q ss_pred EeeCCCChHHHHHHHHHhhCC
Q psy437 113 SYHAGLADKLRNEVQMKWISN 133 (184)
Q Consensus 113 vih~~~p~~~r~~~~~~f~~~ 133 (184)
+|++++|...+.++-+.+..|
T Consensus 97 ~y~~~~pa~lK~~iD~~~~~g 117 (212)
T 3r6w_A 97 MYNFSVPSGLKAWIDQIVRLG 117 (212)
T ss_dssp CBTTBCCHHHHHHHHHHCCBT
T ss_pred cccccCCHHHHHHHHHHhhCC
Confidence 689999999999999996543
No 355
>4dik_A Flavoprotein; TM0755, electron transport, DI-iron protein; 1.75A {Thermotoga maritima} PDB: 4dil_A 1vme_A*
Probab=50.14 E-value=32 Score=28.10 Aligned_cols=58 Identities=7% Similarity=0.097 Sum_probs=38.6
Q ss_pred EEEEe----ccHHHHHHHHHHHHhCCCeeEEec-CCCCHHHHHHHHHHHhccCceEEEEEeecc
Q psy437 37 GIVYC----LTRKECDSVAAALAQERINAISYH-AGLADKLRNEVQMKWISNKVHVGHWTVVSK 95 (184)
Q Consensus 37 ~IIf~----~tr~~~e~la~~L~~~gi~~~~~h-g~l~~~~R~~~~~~f~~g~~~vlVaT~tr~ 95 (184)
+|+|. +|.+.|+.+++.|.+.|+.+..+. .+.+..+...++.....-+ .++++|+|..
T Consensus 269 ~I~Y~S~yGnTe~mA~~ia~gl~~~Gv~~~~~~~~d~~~~~~s~i~~~i~~~~-~ivlGspT~~ 331 (410)
T 4dik_A 269 TVIYDSMYGFVENVMKKAIDSLKEKGFTPVVYKFSDEERPAISEILKDIPDSE-ALIFGVSTYE 331 (410)
T ss_dssp EEEEECSSSHHHHHHHHHHHHHHHTTCEEEEEEECSSCCCCHHHHHHHSTTCS-EEEEEECCTT
T ss_pred eeEEecccChHHHHHHHHHHHHHhcCCceEEEEeccCCCCCHHHHHHHHHhCC-eEEEEeCCcC
Confidence 45565 578889999999999999876542 2344444555666554433 4788898763
No 356
>2khp_A Glutaredoxin; thioredoxin type domain, ssgcid, electron TRAN structural genomics, seattle structural genomics center for infectious disease; NMR {Brucella melitensis}
Probab=49.55 E-value=41 Score=20.33 Aligned_cols=54 Identities=22% Similarity=0.163 Sum_probs=36.9
Q ss_pred cEEEEe-ccHHHHHHHHHHHHhCCCeeEEecCCCCHHHHHHHHHHHhccCceEEE
Q psy437 36 SGIVYC-LTRKECDSVAAALAQERINAISYHAGLADKLRNEVQMKWISNKVHVGH 89 (184)
Q Consensus 36 ~~IIf~-~tr~~~e~la~~L~~~gi~~~~~hg~l~~~~R~~~~~~f~~g~~~vlV 89 (184)
+.++|. +++..|..+...|.+.++....+.-..++..+....+.+-...+++++
T Consensus 7 ~v~ly~~~~C~~C~~~~~~L~~~~i~~~~~di~~~~~~~~~l~~~~~~~~vP~l~ 61 (92)
T 2khp_A 7 DVIIYTRPGCPYCARAKALLARKGAEFNEIDASATPELRAEMQERSGRNTFPQIF 61 (92)
T ss_dssp CEEEEECTTCHHHHHHHHHHHHTTCCCEEEESTTSHHHHHHHHHHHTSSCCCEEE
T ss_pred cEEEEECCCChhHHHHHHHHHHcCCCcEEEECCCCHHHHHHHHHHhCCCCcCEEE
Confidence 455665 667899999999999988877666554555555555555556677553
No 357
>1xky_A Dihydrodipicolinate synthase; TIM barrel, , lysine biosynthesis;spine, lyase; 1.94A {Bacillus anthracis} SCOP: c.1.10.1 PDB: 1xl9_A 3hij_A*
Probab=49.49 E-value=89 Score=24.20 Aligned_cols=94 Identities=10% Similarity=0.014 Sum_probs=60.0
Q ss_pred HHHHHHHHHhCCCeeEEecC------CCCHHHHHHHHHHHh---ccCceEEEEEeec--ccHHHHHHHHHhcCCcEEEe-
Q psy437 47 CDSVAAALAQERINAISYHA------GLADKLRNEVQMKWI---SNKVHVGHWTVVS--KECDSVAAALAQERINAISY- 114 (184)
Q Consensus 47 ~e~la~~L~~~gi~~~~~hg------~l~~~~R~~~~~~f~---~g~~~vlVaT~tr--~~~e~~a~gL~~~gi~~~vi- 114 (184)
.+.+.++|.+.|+...+.-| .|+.+||.++++... .|+++||+.|.+- .++-.+++.....|.++..+
T Consensus 35 l~~lv~~li~~Gv~gl~v~GtTGE~~~Ls~eEr~~v~~~~~~~~~grvpViaGvg~~~t~~ai~la~~A~~~Gadavlv~ 114 (301)
T 1xky_A 35 TTKLVNYLIDNGTTAIVVGGTTGESPTLTSEEKVALYRHVVSVVDKRVPVIAGTGSNNTHASIDLTKKATEVGVDAVMLV 114 (301)
T ss_dssp HHHHHHHHHHTTCCEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTSSCEEEECCCSCHHHHHHHHHHHHHTTCSEEEEE
T ss_pred HHHHHHHHHHcCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCCCceEEeCCCCCCHHHHHHHHHHHHhcCCCEEEEc
Confidence 45566666666776655555 378899999988876 4788999887653 44555667777788885322
Q ss_pred --eCCCCh--HHHHHHHHHhhCCCceEEEE
Q psy437 115 --HAGLAD--KLRNEVQMKWISNKVHLYNV 140 (184)
Q Consensus 115 --h~~~p~--~~r~~~~~~f~~~~~~v~va 140 (184)
.|..|. ....|....-..-.++|++.
T Consensus 115 ~P~y~~~s~~~l~~~f~~va~a~~lPiilY 144 (301)
T 1xky_A 115 APYYNKPSQEGMYQHFKAIAESTPLPVMLY 144 (301)
T ss_dssp CCCSSCCCHHHHHHHHHHHHHTCSSCEEEE
T ss_pred CCCCCCCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 233332 23445555555557888876
No 358
>3p6l_A Sugar phosphate isomerase/epimerase; TIM barrel, structural genomics, joint center for structural genomics, JCSG; HET: CIT; 1.85A {Parabacteroides distasonis}
Probab=49.15 E-value=76 Score=23.31 Aligned_cols=74 Identities=14% Similarity=0.014 Sum_probs=50.2
Q ss_pred cHHHHHHHHHHHHhCCCeeEEecCCCC--HHHHHHHHHHHhccCceEEEEEeecccHHHHHHHHHhcCCcEEEeeCC
Q psy437 43 TRKECDSVAAALAQERINAISYHAGLA--DKLRNEVQMKWISNKVHVGHWTVVSKECDSVAAALAQERINAISYHAG 117 (184)
Q Consensus 43 tr~~~e~la~~L~~~gi~~~~~hg~l~--~~~R~~~~~~f~~g~~~vlVaT~tr~~~e~~a~gL~~~gi~~~vih~~ 117 (184)
+....+.+.+.+.+.|+++..+|.... .+.-.+.++.-..=..+.|+..++......++......|+. +.+|-.
T Consensus 61 ~~~~~~~~~~~l~~~gl~i~~~~~~~~~~~~~~~~~i~~A~~lGa~~v~~~~~~~~~~~l~~~a~~~gv~-l~~En~ 136 (262)
T 3p6l_A 61 DAQTQKEIKELAASKGIKIVGTGVYVAEKSSDWEKMFKFAKAMDLEFITCEPALSDWDLVEKLSKQYNIK-ISVHNH 136 (262)
T ss_dssp CHHHHHHHHHHHHHTTCEEEEEEEECCSSTTHHHHHHHHHHHTTCSEEEECCCGGGHHHHHHHHHHHTCE-EEEECC
T ss_pred CHHHHHHHHHHHHHcCCeEEEEeccCCccHHHHHHHHHHHHHcCCCEEEecCCHHHHHHHHHHHHHhCCE-EEEEeC
Confidence 356788999999999999887766432 23333344444443456666666666677788888888998 777654
No 359
>3b6i_A Flavoprotein WRBA; flavoproteins, NADH:quinone oxidoreductase, FMN; HET: FMN 15P; 1.66A {Escherichia coli} PDB: 2r96_A* 2r97_A 2rg1_A* 3b6j_A* 3b6k_A* 3b6m_A*
Probab=49.10 E-value=40 Score=23.71 Aligned_cols=24 Identities=8% Similarity=0.106 Sum_probs=17.2
Q ss_pred ccHHHHHHHHHHHHh-CCCeeEEec
Q psy437 42 LTRKECDSVAAALAQ-ERINAISYH 65 (184)
Q Consensus 42 ~tr~~~e~la~~L~~-~gi~~~~~h 65 (184)
+|++.++.+++.|.+ .|..+..++
T Consensus 14 ~t~~la~~i~~~l~~~~g~~v~~~~ 38 (198)
T 3b6i_A 14 HIETMARAVAEGASKVDGAEVVVKR 38 (198)
T ss_dssp HHHHHHHHHHHHHHTSTTCEEEEEE
T ss_pred HHHHHHHHHHHHHhhcCCCEEEEEE
Confidence 466777788888877 787766654
No 360
>3flh_A Uncharacterized protein LP_1913; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.00A {Lactobacillus plantarum} PDB: 3fnj_A 3i3u_A
Probab=48.86 E-value=8.6 Score=25.54 Aligned_cols=36 Identities=8% Similarity=-0.000 Sum_probs=28.4
Q ss_pred CceEEEEEeeccc--HHHHHHHHHhcCCcEEEeeCCCC
Q psy437 84 KVHVGHWTVVSKE--CDSVAAALAQERINAISYHAGLA 119 (184)
Q Consensus 84 ~~~vlVaT~tr~~--~e~~a~gL~~~gi~~~vih~~~p 119 (184)
..+|+|+|.+-.. +..+|..|...|+++.++.+|+.
T Consensus 71 ~~~ivvyC~~g~r~~s~~a~~~L~~~G~~v~~l~GG~~ 108 (124)
T 3flh_A 71 AKTYVVYDWTGGTTLGKTALLVLLSAGFEAYELAGALE 108 (124)
T ss_dssp TSEEEEECSSSSCSHHHHHHHHHHHHTCEEEEETTHHH
T ss_pred CCeEEEEeCCCCchHHHHHHHHHHHcCCeEEEeCCcHH
Confidence 4578888887665 78899999999998777777753
No 361
>2zki_A 199AA long hypothetical Trp repressor binding protein; alpha/beta structure, transcription; 2.90A {Sulfolobus tokodaii}
Probab=48.83 E-value=34 Score=24.20 Aligned_cols=17 Identities=12% Similarity=0.161 Sum_probs=13.6
Q ss_pred EeeCCCChHHHHHHHHH
Q psy437 113 SYHAGLADKLRNEVQMK 129 (184)
Q Consensus 113 vih~~~p~~~r~~~~~~ 129 (184)
+|++++|...+.++-+.
T Consensus 80 ~y~~~~~~~lk~~ld~~ 96 (199)
T 2zki_A 80 TRYGNMAGGLKTFLDTT 96 (199)
T ss_dssp CBTTBCCHHHHHHHHTT
T ss_pred ccccCccHHHHHHHHHh
Confidence 57788888888888775
No 362
>2j32_A Caspase-3; Pro-caspase3, thiol protease, hydrolase, hydrolase-hydrolase inhibitor complex; 1.30A {Homo sapiens} PDB: 2j30_A 3h0e_A* 2j33_A 3pd1_A 2j31_A 3pcx_A 1nms_A* 1nmq_A* 3deh_A* 3dei_A* 3dej_A* 3dek_A* 3pd0_A 3itn_A 1qx3_A
Probab=48.68 E-value=81 Score=23.75 Aligned_cols=40 Identities=8% Similarity=0.046 Sum_probs=33.4
Q ss_pred cHHHHHHHHHHHHhCCCeeEEecCCCCHHHHHHHHHHHhcc
Q psy437 43 TRKECDSVAAALAQERINAISYHAGLADKLRNEVQMKWISN 83 (184)
Q Consensus 43 tr~~~e~la~~L~~~gi~~~~~hg~l~~~~R~~~~~~f~~g 83 (184)
|..+++.+++.|+..|+.+.. +-+++.++-.+.+++|...
T Consensus 39 ~~~D~~~l~~~f~~LgF~V~~-~~dlt~~em~~~l~~~~~~ 78 (250)
T 2j32_A 39 TDVDAANLRETFRNLKYEVRN-KNDLTREEIVELMRDVSKE 78 (250)
T ss_dssp HHHHHHHHHHHHHHTTCEEEE-EESCCHHHHHHHHHHHHTS
T ss_pred CHHHHHHHHHHHHHCCCEEEE-EeCCCHHHHHHHHHHHHHh
Confidence 345899999999999999764 5678999989999999764
No 363
>2h3h_A Sugar ABC transporter, periplasmic sugar-binding protein; glucose binding protein, periplasmic binding protein, GBP; HET: BGC; 1.70A {Thermotoga maritima} PDB: 2qvc_A* 3c6q_B*
Probab=48.56 E-value=84 Score=23.63 Aligned_cols=24 Identities=4% Similarity=-0.033 Sum_probs=10.5
Q ss_pred HHHHHHHHHhc--CCcEEEeeCCCCh
Q psy437 97 CDSVAAALAQE--RINAISYHAGLAD 120 (184)
Q Consensus 97 ~e~~a~gL~~~--gi~~~vih~~~p~ 120 (184)
...+++.|-.. |.+-.++=++.+.
T Consensus 109 g~~a~~~L~~~~~G~~~I~~i~~~~~ 134 (313)
T 2h3h_A 109 GYTAGLIMKELLGGKGKVVIGTGSLT 134 (313)
T ss_dssp HHHHHHHHHHHHTSCSEEEEEESCSS
T ss_pred HHHHHHHHHHHcCCCCEEEEEECCCC
Confidence 34444444443 5554444444333
No 364
>3sir_A Caspase; hydrolase; 2.68A {Drosophila melanogaster} PDB: 3sip_A
Probab=48.37 E-value=60 Score=24.70 Aligned_cols=39 Identities=13% Similarity=0.015 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHhCCCeeEEecCCCCHHHHHHHHHHHhcc
Q psy437 44 RKECDSVAAALAQERINAISYHAGLADKLRNEVQMKWISN 83 (184)
Q Consensus 44 r~~~e~la~~L~~~gi~~~~~hg~l~~~~R~~~~~~f~~g 83 (184)
..+++.+++.|+..|+.+.. +-+++.++-.+.+++|..-
T Consensus 43 ~~D~~~L~~~f~~LGF~V~~-~~dlt~~em~~~l~~~~~~ 81 (259)
T 3sir_A 43 NVDCENLTRVLKQLDFEVTV-YKDCRYKDILRTIEYSASQ 81 (259)
T ss_dssp CCHHHHHHHHHHHTTCEEEE-EEECSHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHCCCEEEE-EeCCCHHHHHHHHHHHHHh
Confidence 36899999999999999764 4589999888999998753
No 365
>2fz5_A Flavodoxin; alpha/beta doubly-wound topology, non-covalently bound FMN, electron transport; HET: FNR; NMR {Megasphaera elsdenii} SCOP: c.23.5.1
Probab=48.34 E-value=54 Score=21.35 Aligned_cols=45 Identities=13% Similarity=-0.107 Sum_probs=27.8
Q ss_pred ccHHHHHHHHHHHHhCCCeeEEecCC-CCHHHHHHHHHHHhccCceEEEEEeec
Q psy437 42 LTRKECDSVAAALAQERINAISYHAG-LADKLRNEVQMKWISNKVHVGHWTVVS 94 (184)
Q Consensus 42 ~tr~~~e~la~~L~~~gi~~~~~hg~-l~~~~R~~~~~~f~~g~~~vlVaT~tr 94 (184)
+|++.++.+++.|...|+.+..+.-. .+. ..+.. --.++++|++.
T Consensus 12 nT~~~a~~i~~~l~~~g~~v~~~~~~~~~~-------~~l~~-~d~vi~g~p~y 57 (137)
T 2fz5_A 12 NTEAMANEIEAAVKAAGADVESVRFEDTNV-------DDVAS-KDVILLGCPAM 57 (137)
T ss_dssp HHHHHHHHHHHHHHHTTCCEEEEETTSCCH-------HHHHT-CSEEEEECCCB
T ss_pred hHHHHHHHHHHHHHhCCCeEEEEEcccCCH-------HHHhc-CCEEEEEcccc
Confidence 46677777888887778877666532 221 22333 23478888875
No 366
>3zyw_A Glutaredoxin-3; metal binding protein; 1.84A {Homo sapiens}
Probab=48.11 E-value=53 Score=21.22 Aligned_cols=57 Identities=9% Similarity=-0.031 Sum_probs=41.1
Q ss_pred CceEEEEE------eecccHHHHHHHHHhcCCcEEEeeCCCChHHHHHHHHHhhCCCceEEEE
Q psy437 84 KVHVGHWT------VVSKECDSVAAALAQERINAISYHAGLADKLRNEVQMKWISNKVHLYNV 140 (184)
Q Consensus 84 ~~~vlVaT------~tr~~~e~~a~gL~~~gi~~~vih~~~p~~~r~~~~~~f~~~~~~v~va 140 (184)
..+|+|++ +.-..|..+-+.|+..|++...++.+.....+.++.+.-....++.+..
T Consensus 15 ~~~Vvlf~kg~~~~~~Cp~C~~ak~~L~~~gi~y~~~di~~d~~~~~~l~~~~g~~tvP~ifi 77 (111)
T 3zyw_A 15 AAPCMLFMKGTPQEPRCGFSKQMVEILHKHNIQFSSFDIFSDEEVRQGLKAYSSWPTYPQLYV 77 (111)
T ss_dssp SSSEEEEESBCSSSBSSHHHHHHHHHHHHTTCCCEEEEGGGCHHHHHHHHHHHTCCSSCEEEE
T ss_pred cCCEEEEEecCCCCCcchhHHHHHHHHHHcCCCeEEEECcCCHHHHHHHHHHHCCCCCCEEEE
Confidence 34678888 4557899999999999999777777777777777766544445655543
No 367
>3ctp_A Periplasmic binding protein/LACI transcriptional; structural genomics, protein structure initiative; HET: XLF; 1.41A {Alkaliphilus metalliredigens}
Probab=48.05 E-value=88 Score=23.83 Aligned_cols=68 Identities=7% Similarity=-0.031 Sum_probs=40.8
Q ss_pred HHHHHHHHHhCCCeeEEecCCCCHHHHHHHHHHHhccCceEEEEEeecccHHHHHHHHHhcCCcEEEeeCCCC
Q psy437 47 CDSVAAALAQERINAISYHAGLADKLRNEVQMKWISNKVHVGHWTVVSKECDSVAAALAQERINAISYHAGLA 119 (184)
Q Consensus 47 ~e~la~~L~~~gi~~~~~hg~l~~~~R~~~~~~f~~g~~~vlVaT~tr~~~e~~a~gL~~~gi~~~vih~~~p 119 (184)
.+-+.+.+.+.|+.+..+..+-+.+.-...++.+....+..|| .+..... ..|...|++++++....|
T Consensus 79 ~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiI-~~~~~~~----~~l~~~~iPvV~~~~~~~ 146 (330)
T 3ctp_A 79 ASVIEEYAKNKGYTLFLCNTDDDKEKEKTYLEVLQSHRVAGII-ASRSQCE----DEYANIDIPVVAFENHIL 146 (330)
T ss_dssp HHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHTTCSEEE-EETCCCS----GGGTTCCSCEEEESSCCC
T ss_pred HHHHHHHHHHCCCEEEEEeCCCChHHHHHHHHHHHhCCCCEEE-ECCCCCH----HHHHhcCCCEEEEeccCC
Confidence 3444555566788877766655555555667777777777777 6543221 224566777555554443
No 368
>2dko_A Caspase-3; low barrier hydrogen bond, caspase, drug design, radiation D tetrahedral intermediate, protease; 1.06A {Homo sapiens} PDB: 1nme_A 2h5i_A 2h5j_A 2h65_A 2xyg_A* 2xyh_A 2xyp_A* 2xzd_A 2xzt_A 2y0b_A 3edq_A 1gfw_A 1re1_A* 1pau_A* 1rhk_A* 1rhm_A* 1rhq_A* 1rhr_A* 1rhu_A* 1rhj_A* ...
Probab=47.99 E-value=66 Score=22.23 Aligned_cols=40 Identities=8% Similarity=0.023 Sum_probs=32.6
Q ss_pred cHHHHHHHHHHHHhCCCeeEEecCCCCHHHHHHHHHHHhcc
Q psy437 43 TRKECDSVAAALAQERINAISYHAGLADKLRNEVQMKWISN 83 (184)
Q Consensus 43 tr~~~e~la~~L~~~gi~~~~~hg~l~~~~R~~~~~~f~~g 83 (184)
|..+++.+.+.|...|+.+..+ -+++.++-.+.+++|.+.
T Consensus 39 t~~D~~~L~~~f~~LgF~V~~~-~dlt~~em~~~l~~~~~~ 78 (146)
T 2dko_A 39 TDVDAANLRETFRNLKYEVRNK-NDLTREEIVELMRDVSKE 78 (146)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEE-ESCCHHHHHHHHHHHHHS
T ss_pred CHHHHHHHHHHHHHCCCEEEEe-eCCCHHHHHHHHHHHHHh
Confidence 4568999999999999997655 478888888888888753
No 369
>1m72_A Caspase-1; caspase, cysteine protease, hydrolase-hydrolase inhibitor CO; 2.30A {Spodoptera frugiperda} SCOP: c.17.1.1 PDB: 3sip_B
Probab=47.95 E-value=91 Score=23.86 Aligned_cols=48 Identities=10% Similarity=0.102 Sum_probs=39.1
Q ss_pred CcEEEEecc-------------HHHHHHHHHHHHhCCCeeEEecCCCCHHHHHHHHHHHhcc
Q psy437 35 QSGIVYCLT-------------RKECDSVAAALAQERINAISYHAGLADKLRNEVQMKWISN 83 (184)
Q Consensus 35 ~~~IIf~~t-------------r~~~e~la~~L~~~gi~~~~~hg~l~~~~R~~~~~~f~~g 83 (184)
+-+||+.+. ..+++.+++.|+..|+.+.. +-+++.++-.+.+++|...
T Consensus 33 g~aLIInn~~f~~~~l~~R~g~~~Da~~L~~~f~~LGF~V~~-~~dlt~~em~~~l~~~~~~ 93 (272)
T 1m72_A 33 GMAIIFNHEHFDIHSLKSRTGTNVDSDNLSKVLKTLGFKVTV-FPNLKSEEINKFIQQTAEM 93 (272)
T ss_dssp EEEEEEECCCCSSTTCCCCTTHHHHHHHHHHHHHHTTCEEEE-EESCCHHHHHHHHHHHHTS
T ss_pred CEEEEEechhcCCCCcccCCCCHHHHHHHHHHHHHCCCEEEE-ecCcCHHHHHHHHHHHHHh
Confidence 347887764 77999999999999999765 4579999999999999753
No 370
>1yt8_A Thiosulfate sulfurtransferase; rhodanase domains, cyanide detoxification, structural genomics, PSI, protein structure initiative; 1.90A {Pseudomonas aeruginosa} SCOP: c.46.1.2 c.46.1.2 c.46.1.2 c.46.1.2
Probab=47.73 E-value=15 Score=31.10 Aligned_cols=36 Identities=17% Similarity=0.007 Sum_probs=30.9
Q ss_pred CCcEEEEeccHHHHHHHHHHHHhCCCeeEEecC-CCC
Q psy437 34 GQSGIVYCLTRKECDSVAAALAQERINAISYHA-GLA 69 (184)
Q Consensus 34 ~~~~IIf~~tr~~~e~la~~L~~~gi~~~~~hg-~l~ 69 (184)
..+.++||.+-..+...+.+|...|+++..+.| |+.
T Consensus 322 ~~~ivv~c~~g~rs~~aa~~L~~~G~~v~~l~G~G~~ 358 (539)
T 1yt8_A 322 GARLVLVDDDGVRANMSASWLAQMGWQVAVLDGLSEA 358 (539)
T ss_dssp TCEEEEECSSSSHHHHHHHHHHHTTCEEEEECSCCGG
T ss_pred CCeEEEEeCCCCcHHHHHHHHHHcCCeEEEecCCChH
Confidence 467888999887888889999999999888999 874
No 371
>2wlr_A Putative thiosulfate sulfurtransferase YNJE; rhodanese domains; HET: EPE; 1.45A {Escherichia coli} PDB: 2wlx_A* 3ipo_A* 3ipp_A
Probab=47.33 E-value=17 Score=29.73 Aligned_cols=47 Identities=17% Similarity=0.129 Sum_probs=35.0
Q ss_pred HHHHHHHhh--cCCCcEEEEeccHHHHHHHHHHHHhCCCe-eEEecCCCC
Q psy437 23 EVISLIKAK--YSGQSGIVYCLTRKECDSVAAALAQERIN-AISYHAGLA 69 (184)
Q Consensus 23 ~L~~~l~~~--~~~~~~IIf~~tr~~~e~la~~L~~~gi~-~~~~hg~l~ 69 (184)
.|.+.+.+. .+..+.|+||.+-..+...+..|...|+. +..|.||+.
T Consensus 345 ~l~~~~~~~~~~~~~~ivvyC~sG~rs~~aa~~L~~~G~~~v~~~~GG~~ 394 (423)
T 2wlr_A 345 DITAMWKAWNIKPEQQVSFYCGTGWRASETFMYARAMGWKNVSVYDGGWY 394 (423)
T ss_dssp HHHHHHHTTTCCTTSEEEEECSSSHHHHHHHHHHHHTTCSSEEEESSHHH
T ss_pred HHHHHHHHcCCCCCCcEEEECCcHHHHHHHHHHHHHcCCCCcceeCccHH
Confidence 555555321 13456788999988888999999999994 888888853
No 372
>2h0a_A TTHA0807, transcriptional regulator; repressor, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.80A {Thermus thermophilus}
Probab=47.23 E-value=24 Score=26.09 Aligned_cols=66 Identities=6% Similarity=-0.146 Sum_probs=27.1
Q ss_pred HHHHHhCCCeeEEecCCCCHHHHHHHHHHHhccCceEE-----------EEEeecccHHHHHHHHHhcCCcEEEeeCCCC
Q psy437 51 AAALAQERINAISYHAGLADKLRNEVQMKWISNKVHVG-----------HWTVVSKECDSVAAALAQERINAISYHAGLA 119 (184)
Q Consensus 51 a~~L~~~gi~~~~~hg~l~~~~R~~~~~~f~~g~~~vl-----------VaT~tr~~~e~~a~gL~~~gi~~~vih~~~p 119 (184)
.+.|...++....+.+..... ..++.+.+..++++ |.++.......+++.|-..|.+-.++=++.+
T Consensus 48 ~~~l~~~~vdgiI~~~~~~~~---~~~~~~~~~~iPvV~~~~~~~~~~~V~~d~~~~~~~a~~~L~~~G~~~i~~i~~~~ 124 (276)
T 2h0a_A 48 ENTTLAYLTDGLILASYDLTE---RFEEGRLPTERPVVLVDAQNPRYDSVYLDNRLGGRLAGAYLARFPGPIFAIAVEEE 124 (276)
T ss_dssp ------CCCSEEEEESCCCC---------CCSCSSCEEEESSCCTTSEEEEECSHHHHHHHHHHHTTSSSCEEEEEECCS
T ss_pred HHHHHhCCCCEEEEecCCCCH---HHHHHHhhcCCCEEEEeccCCCCCEEEEccHHHHHHHHHHHHHcCCCeEEEEecCc
Confidence 344444556555554432221 23344444344443 3344445566777777666766333333333
No 373
>2nn3_C Caspase-1; cysteine protease, hydrolase; 3.00A {Spodoptera frugiperda}
Probab=47.17 E-value=69 Score=25.17 Aligned_cols=49 Identities=10% Similarity=0.128 Sum_probs=39.8
Q ss_pred CCcEEEEecc-------------HHHHHHHHHHHHhCCCeeEEecCCCCHHHHHHHHHHHhcc
Q psy437 34 GQSGIVYCLT-------------RKECDSVAAALAQERINAISYHAGLADKLRNEVQMKWISN 83 (184)
Q Consensus 34 ~~~~IIf~~t-------------r~~~e~la~~L~~~gi~~~~~hg~l~~~~R~~~~~~f~~g 83 (184)
.+-+||+.+. ..+++.+++.|+..|+.+..+ -+++.++-.+.+++|...
T Consensus 60 rg~aLIInN~~F~~~~l~~R~Gt~~Da~~L~~~f~~LGF~V~~~-~dlt~~em~~~l~~f~~~ 121 (310)
T 2nn3_C 60 RGMAIIFNHEHFDIHSLKSRTGTNVDSDNLSKVLKTLGFKVTVF-PNLKSEEINKFIQQTAEM 121 (310)
T ss_dssp CCEEEEEECCCCSSTTCCCCTTHHHHHHHHHHHHHHTTCEEEEE-ESCCHHHHHHHHHHHHSS
T ss_pred cCEEEEEechhcCCCCcccCCCCHHHHHHHHHHHHHCCCEEEEe-cCCCHHHHHHHHHHHHHh
Confidence 3457888764 779999999999999997654 579999988999998753
No 374
>3e96_A Dihydrodipicolinate synthase; structural genomics, nysgrc, target 9375C, operon, PSI-2; 1.80A {Bacillus clausii ksm-k16} SCOP: c.1.10.0
Probab=46.70 E-value=1e+02 Score=24.06 Aligned_cols=95 Identities=7% Similarity=-0.061 Sum_probs=56.0
Q ss_pred HHHHHHHHHHhCCCeeEEecC------CCCHHHHHHHHHHHh---ccCceEEEEEee-cccHHHHHHHHHhcCCcEEEe-
Q psy437 46 ECDSVAAALAQERINAISYHA------GLADKLRNEVQMKWI---SNKVHVGHWTVV-SKECDSVAAALAQERINAISY- 114 (184)
Q Consensus 46 ~~e~la~~L~~~gi~~~~~hg------~l~~~~R~~~~~~f~---~g~~~vlVaT~t-r~~~e~~a~gL~~~gi~~~vi- 114 (184)
..+.+.++|.+.|+.-.+.-| .|+.+||.++++.+. .|+++||+.|.+ -.++-.+++.....|.++..+
T Consensus 34 ~l~~lv~~li~~Gv~Gl~v~GtTGE~~~Ls~eEr~~v~~~~v~~~~grvpViaGvg~~t~~ai~la~~A~~~Gadavlv~ 113 (316)
T 3e96_A 34 HYKETVDRIVDNGIDVIVPCGNTSEFYALSLEEAKEEVRRTVEYVHGRALVVAGIGYATSTAIELGNAAKAAGADAVMIH 113 (316)
T ss_dssp HHHHHHHHHHTTTCCEECTTSGGGTGGGSCHHHHHHHHHHHHHHHTTSSEEEEEECSSHHHHHHHHHHHHHHTCSEEEEC
T ss_pred HHHHHHHHHHHcCCCEEEeCccccCcccCCHHHHHHHHHHHHHHhCCCCcEEEEeCcCHHHHHHHHHHHHhcCCCEEEEc
Confidence 345556666666766555444 367899999988776 478899988754 122333445556678875332
Q ss_pred --eCCCC--hHHHHHHHHHhhCCCceEEEE
Q psy437 115 --HAGLA--DKLRNEVQMKWISNKVHLYNV 140 (184)
Q Consensus 115 --h~~~p--~~~r~~~~~~f~~~~~~v~va 140 (184)
.|..| .....|.......-.++|++.
T Consensus 114 ~P~y~~~s~~~l~~~f~~va~a~~lPiilY 143 (316)
T 3e96_A 114 MPIHPYVTAGGVYAYFRDIIEALDFPSLVY 143 (316)
T ss_dssp CCCCSCCCHHHHHHHHHHHHHHHTSCEEEE
T ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCCEEEE
Confidence 12223 233445555544445777776
No 375
>3mwd_B ATP-citrate synthase; ATP-grAsp, phosphohistidine, organic acid, lyase, transferas; HET: CIT; 2.10A {Homo sapiens} PDB: 3mwe_B*
Probab=46.65 E-value=30 Score=27.60 Aligned_cols=52 Identities=19% Similarity=0.233 Sum_probs=38.5
Q ss_pred CcEEEEeccHHHHHHHHHHHHhCCCeeEE-ecCCCCHHHHHHHHHHHhccCce
Q psy437 35 QSGIVYCLTRKECDSVAAALAQERINAIS-YHAGLADKLRNEVQMKWISNKVH 86 (184)
Q Consensus 35 ~~~IIf~~tr~~~e~la~~L~~~gi~~~~-~hg~l~~~~R~~~~~~f~~g~~~ 86 (184)
.-+|||++.....+.+.+.+.+.|++... +..|++.++..++.+.-+....+
T Consensus 81 DlaVi~vp~~~a~~ai~ea~~~~Gv~~vViiT~G~~e~~~~~l~~~a~~~g~r 133 (334)
T 3mwd_B 81 DVLINFASLRSAYDSTMETMNYAQIRTIAIIAEGIPEALTRKLIKKADQKGVT 133 (334)
T ss_dssp CEEEECCCTTTHHHHHHHHTTSTTCCEEEECCSCCCHHHHHHHHHHHHHHTCE
T ss_pred cEEEEecCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHcCCE
Confidence 56788888888788888888888997555 58899986666666665554443
No 376
>1req_B Methylmalonyl-COA mutase; isomerase, intramolecular transferase; HET: B12 DCA; 2.00A {Propionibacterium freudenreichii subspshermanii} SCOP: c.1.19.1 c.23.6.1 PDB: 1e1c_B* 2req_B* 3req_B* 4req_B* 5req_B* 6req_B* 7req_B*
Probab=46.37 E-value=76 Score=27.72 Aligned_cols=71 Identities=15% Similarity=0.134 Sum_probs=54.2
Q ss_pred HHHHHHHHHhCCCeeEEecCCCCHHHHHHHHHHHhccCceEEEEEeecc----cHHHHHHHHHhcCCcEEEeeCCCChHH
Q psy437 47 CDSVAAALAQERINAISYHAGLADKLRNEVQMKWISNKVHVGHWTVVSK----ECDSVAAALAQERINAISYHAGLADKL 122 (184)
Q Consensus 47 ~e~la~~L~~~gi~~~~~hg~l~~~~R~~~~~~f~~g~~~vlVaT~tr~----~~e~~a~gL~~~gi~~~vih~~~p~~~ 122 (184)
+..++..|...|+.+...-+..+ +++.+.+...+..|++.|..-. .+..+...|...|+. .|+=+|-|.+.
T Consensus 527 a~~va~~l~~aGfeVi~~g~~~t----ee~v~aa~e~~adiv~lSsl~~~~~~~~~~v~~~Lk~aG~~-~V~vgG~P~~d 601 (637)
T 1req_B 527 EGFSSPVWHIAGIDTPQVEGGTT----AEIVEAFKKSGAQVADLCSSAKVYAQQGLEVAKALKAAGAK-ALYLSGAFKEF 601 (637)
T ss_dssp HHHHHHHHHHTTCBCCEEECCCH----HHHHHHHHHHTCSEEEEECCHHHHHHHHHHHHHHHHHTTCS-EEEEESCGGGG
T ss_pred HHHHHHHHHhCCeeEEeCCCCCC----HHHHHHHHhcCCCEEEEecccHHHHHHHHHHHHHHHhCCCC-eEEEeCCCCcc
Confidence 45677888889998865544332 7888899888888887777664 567788889999986 67888888773
No 377
>4es6_A Uroporphyrinogen-III synthase; heme-biosynthesis, cytoplasmi; 2.22A {Pseudomonas aeruginosa}
Probab=46.21 E-value=10 Score=28.58 Aligned_cols=73 Identities=8% Similarity=0.029 Sum_probs=41.2
Q ss_pred HHHHHHHHH--h--hcCCCcEEEEeccHHHHHHHHHHHHhCCCeeE---EecCCCCHHHHHHHHHHHhccCceEEEEEee
Q psy437 21 LKEVISLIK--A--KYSGQSGIVYCLTRKECDSVAAALAQERINAI---SYHAGLADKLRNEVQMKWISNKVHVGHWTVV 93 (184)
Q Consensus 21 ~~~L~~~l~--~--~~~~~~~IIf~~tr~~~e~la~~L~~~gi~~~---~~hg~l~~~~R~~~~~~f~~g~~~vlVaT~t 93 (184)
-+.|.+.+. . ...+.+.++ .......+.+.+.|.+.|+.+. .|.-...........+.+..+...++++|++
T Consensus 116 ~e~L~~~l~~~~~~~~~~~~vL~-~rg~~~r~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~l~~~~~d~v~ftS~ 194 (254)
T 4es6_A 116 SEALLALPAFQDSLRVHDPKVLI-MRGEGGREFLAERLRGQGVQVDYLPLYRRRAPDYPAGELLARVRAERLNGLVVSSG 194 (254)
T ss_dssp HHHHHTCHHHHHHTCSSSCEEEE-EECSSCCCHHHHHHHHTTCEEEEEECEEEECCCCCTTHHHHHHHHTTCCEEECCSH
T ss_pred HHHHHHhHhhcccccCCCCEEEE-EcCCccHHHHHHHHHHCCCEEEEEeEEEeeCCCCCHHHHHHHHHhCCCCEEEEcCH
Confidence 455666554 2 223344444 4444455778888888887643 3443322222234455666778888888884
Q ss_pred c
Q psy437 94 S 94 (184)
Q Consensus 94 r 94 (184)
.
T Consensus 195 s 195 (254)
T 4es6_A 195 Q 195 (254)
T ss_dssp H
T ss_pred H
Confidence 3
No 378
>3nhv_A BH2092 protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 2.50A {Bacillus halodurans} PDB: 3o3w_A
Probab=46.07 E-value=13 Score=25.50 Aligned_cols=37 Identities=14% Similarity=0.095 Sum_probs=29.8
Q ss_pred cCceEEEEEeec--ccHHHHHHHHHhcCCcEEEeeCCCC
Q psy437 83 NKVHVGHWTVVS--KECDSVAAALAQERINAISYHAGLA 119 (184)
Q Consensus 83 g~~~vlVaT~tr--~~~e~~a~gL~~~gi~~~vih~~~p 119 (184)
...+|+|+|.+- .....++..|...|+++.++.+|+.
T Consensus 71 ~~~~ivvyC~~g~~~rs~~aa~~L~~~G~~v~~l~GG~~ 109 (144)
T 3nhv_A 71 KEKVIITYCWGPACNGATKAAAKFAQLGFRVKELIGGIE 109 (144)
T ss_dssp TTSEEEEECSCTTCCHHHHHHHHHHHTTCEEEEEESHHH
T ss_pred CCCeEEEEECCCCccHHHHHHHHHHHCCCeEEEeCCcHH
Confidence 345788888876 4678889999999999888888864
No 379
>2pcq_A Putative dihydrodipicolinate synthase; lyase, lysine biosynthesis, dihydrodipicoliante, S genomics, NPPSFA; 2.10A {Thermus thermophilus}
Probab=45.97 E-value=99 Score=23.68 Aligned_cols=70 Identities=9% Similarity=-0.119 Sum_probs=46.5
Q ss_pred CCHHHHHHHHHHHhccCceEEEEEeec--ccHHHHHHHHHhcCCcEEEe---eCCCC---hHHHHHHHHHhhCCCceEEE
Q psy437 68 LADKLRNEVQMKWISNKVHVGHWTVVS--KECDSVAAALAQERINAISY---HAGLA---DKLRNEVQMKWISNKVHLYN 139 (184)
Q Consensus 68 l~~~~R~~~~~~f~~g~~~vlVaT~tr--~~~e~~a~gL~~~gi~~~vi---h~~~p---~~~r~~~~~~f~~~~~~v~v 139 (184)
|+.+||.++++...+ +++||+.|.+- .++-.+++.....|.++..+ .|..| ...-.|...... .++|++
T Consensus 47 Ls~~Er~~v~~~~~~-rvpviaGvg~~~t~~ai~la~~A~~~Gadavlv~~P~y~~~~~~~~l~~~f~~va~--~lPiil 123 (283)
T 2pcq_A 47 LTPEERARGLRALRP-RKPFLVGLMEETLPQAEGALLEAKAAGAMALLATPPRYYHGSLGAGLLRYYEALAE--KMPLFL 123 (283)
T ss_dssp SCHHHHHHHHHTCCC-SSCCEEEECCSSHHHHHHHHHHHHHHTCSEEEECCCCTTGGGTTTHHHHHHHHHHH--HSCEEE
T ss_pred cCHHHHHHHHHHHHh-CCcEEEeCCCCCHHHHHHHHHHHHhcCCCEEEecCCcCCCCCCHHHHHHHHHHHhc--CCCEEE
Confidence 788999999999888 88888877653 44555566677778885322 23323 334455555554 678877
Q ss_pred E
Q psy437 140 V 140 (184)
Q Consensus 140 a 140 (184)
.
T Consensus 124 Y 124 (283)
T 2pcq_A 124 Y 124 (283)
T ss_dssp E
T ss_pred E
Confidence 6
No 380
>2ouc_A Dual specificity protein phosphatase 10; rhodanese fold, hydrolase; 2.20A {Homo sapiens}
Probab=45.64 E-value=8.1 Score=25.84 Aligned_cols=36 Identities=25% Similarity=0.310 Sum_probs=27.2
Q ss_pred CCcEEEEeccHHH---------HHHHHHHHHhCCCeeEEecCCCC
Q psy437 34 GQSGIVYCLTRKE---------CDSVAAALAQERINAISYHAGLA 69 (184)
Q Consensus 34 ~~~~IIf~~tr~~---------~e~la~~L~~~gi~~~~~hg~l~ 69 (184)
..+.|+||.+-.. +..++..|...|+++..+.||+.
T Consensus 83 ~~~ivvyc~~g~~~~~~~~~~~~~~~~~~L~~~G~~v~~l~GG~~ 127 (142)
T 2ouc_A 83 SKEIIVYDENTNEPSRVMPSQPLHIVLESLKREGKEPLVLKGGLS 127 (142)
T ss_dssp HSCEEEECSSCCCGGGCCTTSHHHHHHHHHHHTTCCCEEETTHHH
T ss_pred CCcEEEEECCCCchhhcCcccHHHHHHHHHHHcCCcEEEEccCHH
Confidence 3578899977543 34577888889998888999864
No 381
>3h5d_A DHDPS, dihydrodipicolinate synthase; lysine biosynthesis, amino-ACI biosynthesis, schiff base, cytoplasm, diaminopimelate biosy lyase; HET: MES; 1.99A {Streptococcus pneumoniae}
Probab=45.52 E-value=1.1e+02 Score=23.93 Aligned_cols=94 Identities=7% Similarity=-0.073 Sum_probs=57.4
Q ss_pred HHHHHHHHHhCCCeeEEecC------CCCHHHHHHHHHHHhc---cCceEEEEEeec--ccHHHHHHHHHhcCC-cEEEe
Q psy437 47 CDSVAAALAQERINAISYHA------GLADKLRNEVQMKWIS---NKVHVGHWTVVS--KECDSVAAALAQERI-NAISY 114 (184)
Q Consensus 47 ~e~la~~L~~~gi~~~~~hg------~l~~~~R~~~~~~f~~---g~~~vlVaT~tr--~~~e~~a~gL~~~gi-~~~vi 114 (184)
.+.+.++|.+.|+.-.+.-| .|+.+||.++++.+.+ |+++||+.|.+- .++-.+++.....|. ++..+
T Consensus 30 l~~lv~~li~~Gv~Gl~v~GtTGE~~~Ls~~Er~~v~~~~~~~~~grvpViaGvg~~~t~~ai~la~~A~~~Ga~davlv 109 (311)
T 3h5d_A 30 IPALIEHLLAHHTDGILLAGTTAESPTLTHDEELELFAAVQKVVNGRVPLIAGVGTNDTRDSIEFVKEVAEFGGFAAGLA 109 (311)
T ss_dssp HHHHHHHHHHTTCCCEEESSTTTTGGGSCHHHHHHHHHHHHHHSCSSSCEEEECCCSSHHHHHHHHHHHHHSCCCSEEEE
T ss_pred HHHHHHHHHHcCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCCCCcEEEeCCCcCHHHHHHHHHHHHhcCCCcEEEE
Confidence 44555555556665544444 2778999999988764 788999877653 445555666666664 64221
Q ss_pred ---eCCCCh--HHHHHHHHHhhCCCceEEEE
Q psy437 115 ---HAGLAD--KLRNEVQMKWISNKVHLYNV 140 (184)
Q Consensus 115 ---h~~~p~--~~r~~~~~~f~~~~~~v~va 140 (184)
.|..|. ....|....-..-.++|++.
T Consensus 110 ~~P~y~~~s~~~l~~~f~~va~a~~lPiilY 140 (311)
T 3h5d_A 110 IVPYYNKPSQEGMYQHFKAIADASDLPIIIY 140 (311)
T ss_dssp ECCCSSCCCHHHHHHHHHHHHHSCSSCEEEE
T ss_pred cCCCCCCCCHHHHHHHHHHHHHhCCCCEEEE
Confidence 233332 33455555555667888887
No 382
>3gx8_A Monothiol glutaredoxin-5, mitochondrial; TRX fold, electron transport, mitochondrion, redox-active center, transit peptide, transport; 1.67A {Saccharomyces cerevisiae}
Probab=45.50 E-value=63 Score=21.27 Aligned_cols=70 Identities=11% Similarity=0.058 Sum_probs=47.0
Q ss_pred CCHHHHHHHHHHHhccCceEEEEEee------cccHHHHHHHHHhcCCc---EEEeeCCCChHHHHHHHHHhhCCCceEE
Q psy437 68 LADKLRNEVQMKWISNKVHVGHWTVV------SKECDSVAAALAQERIN---AISYHAGLADKLRNEVQMKWISNKVHLY 138 (184)
Q Consensus 68 l~~~~R~~~~~~f~~g~~~vlVaT~t------r~~~e~~a~gL~~~gi~---~~vih~~~p~~~r~~~~~~f~~~~~~v~ 138 (184)
|+++.+..+.+...+ .+|+|++.+ -..|..+-+.|+..|+. ...+..+.....+.++.+......++.+
T Consensus 1 ~~~~~~~~v~~~i~~--~~Vvvfsk~t~~~p~Cp~C~~ak~lL~~~gv~~~~~~~~dv~~~~~~~~~l~~~sg~~tvP~v 78 (121)
T 3gx8_A 1 LSTEIRKAIEDAIES--APVVLFMKGTPEFPKCGFSRATIGLLGNQGVDPAKFAAYNVLEDPELREGIKEFSEWPTIPQL 78 (121)
T ss_dssp -CHHHHHHHHHHHHS--CSEEEEESBCSSSBCTTHHHHHHHHHHHHTBCGGGEEEEECTTCHHHHHHHHHHHTCCSSCEE
T ss_pred CCHHHHHHHHHHhcc--CCEEEEEeccCCCCCCccHHHHHHHHHHcCCCcceEEEEEecCCHHHHHHHHHHhCCCCCCeE
Confidence 344555555554443 357888774 67899999999999997 5667777777777877765444455555
Q ss_pred E
Q psy437 139 N 139 (184)
Q Consensus 139 v 139 (184)
.
T Consensus 79 f 79 (121)
T 3gx8_A 79 Y 79 (121)
T ss_dssp E
T ss_pred E
Confidence 4
No 383
>2qv7_A Diacylglycerol kinase DGKB; alpha-beta domain 1, beta sandwich domain 2, protein-ADP COM transferase; HET: ADP; 2.30A {Staphylococcus aureus} SCOP: e.52.1.2 PDB: 2qvl_A
Probab=45.14 E-value=1.1e+02 Score=23.90 Aligned_cols=95 Identities=6% Similarity=-0.019 Sum_probs=60.1
Q ss_pred cEEEEeccH-------HHHHHHHHHHHhCCCeeEEecCCCCHHHHHHHHHHHhccCceEEEEEeecccHHHHHHHH--Hh
Q psy437 36 SGIVYCLTR-------KECDSVAAALAQERINAISYHAGLADKLRNEVQMKWISNKVHVGHWTVVSKECDSVAAAL--AQ 106 (184)
Q Consensus 36 ~~IIf~~tr-------~~~e~la~~L~~~gi~~~~~hg~l~~~~R~~~~~~f~~g~~~vlVaT~tr~~~e~~a~gL--~~ 106 (184)
+.+|++|.. +..+.+...|.+.|+.+..+-..-..... ....+.......+||+.-.-+.+-.++.+| ..
T Consensus 26 ~i~vI~NP~sg~~~~~~~~~~i~~~L~~~g~~~~~~~t~~~~~a~-~~~~~~~~~~~d~vvv~GGDGTv~~v~~~l~~~~ 104 (337)
T 2qv7_A 26 RARIIYNPTSGKEQFKRELPDALIKLEKAGYETSAYATEKIGDAT-LEAERAMHENYDVLIAAGGDGTLNEVVNGIAEKP 104 (337)
T ss_dssp EEEEEECTTSTTSCHHHHHHHHHHHHHHTTEEEEEEECCSTTHHH-HHHHHHTTTTCSEEEEEECHHHHHHHHHHHTTCS
T ss_pred eEEEEECCCCCCCchHHHHHHHHHHHHHcCCeEEEEEecCcchHH-HHHHHHhhcCCCEEEEEcCchHHHHHHHHHHhCC
Confidence 355566543 23567778888888877665432221222 233444455678899999999999999999 45
Q ss_pred cCCcEEEeeC----------CCChHHHHHHHHHhh
Q psy437 107 ERINAISYHA----------GLADKLRNEVQMKWI 131 (184)
Q Consensus 107 ~gi~~~vih~----------~~p~~~r~~~~~~f~ 131 (184)
.++...++.. ++|.+....+.....
T Consensus 105 ~~~pl~iIP~GT~N~lAr~Lg~~~~~~~al~~i~~ 139 (337)
T 2qv7_A 105 NRPKLGVIPMGTVNDFGRALHIPNDIMGALDVIIE 139 (337)
T ss_dssp SCCEEEEEECSSCCHHHHHTTCCSSHHHHHHHHHH
T ss_pred CCCcEEEecCCcHhHHHHHcCCCCCHHHHHHHHHc
Confidence 6677666665 467666665555433
No 384
>3tp9_A Beta-lactamase and rhodanese domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.70A {Alicyclobacillus acidocaldarius subsp}
Probab=44.09 E-value=9.7 Score=31.57 Aligned_cols=37 Identities=22% Similarity=0.254 Sum_probs=31.5
Q ss_pred CCCcEEEEeccHHHHHHHHHHHHhCCCe-eEEecCCCC
Q psy437 33 SGQSGIVYCLTRKECDSVAAALAQERIN-AISYHAGLA 69 (184)
Q Consensus 33 ~~~~~IIf~~tr~~~e~la~~L~~~gi~-~~~~hg~l~ 69 (184)
+..+.|+||.+-..+...+..|...|+. +..|.||+.
T Consensus 426 ~~~~vvv~C~~G~ra~~a~~~L~~~G~~~v~~~~Gg~~ 463 (474)
T 3tp9_A 426 RDGSVCVYCRTGGRSAIAASLLRAHGVGDVRNMVGGYE 463 (474)
T ss_dssp SSSCEEEECSSSHHHHHHHHHHHHHTCSSEEEETTHHH
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHcCCCCEEEecChHH
Confidence 4567889999998899999999999995 888988864
No 385
>1t3k_A Arath CDC25, dual-specificity tyrosine phosphatase; cell cycle, phosphorylation, plant, hydrolase; NMR {Arabidopsis thaliana} SCOP: c.46.1.1
Probab=43.40 E-value=24 Score=24.30 Aligned_cols=38 Identities=13% Similarity=0.166 Sum_probs=23.0
Q ss_pred CCCcEEEEec-cHHHHHHHHHHH--------HhCCC-eeEEecCCCCH
Q psy437 33 SGQSGIVYCL-TRKECDSVAAAL--------AQERI-NAISYHAGLAD 70 (184)
Q Consensus 33 ~~~~~IIf~~-tr~~~e~la~~L--------~~~gi-~~~~~hg~l~~ 70 (184)
+..+.|+||. +-......+..| ...|+ ++..+.||+..
T Consensus 84 ~~~~iVvyC~~~G~rs~~aa~~L~~~l~~~L~~~G~~~V~~L~GG~~~ 131 (152)
T 1t3k_A 84 DKDTLVFHSALSQVRGPTCARRLVNYLDEKKEDTGIKNIMILERGFNG 131 (152)
T ss_dssp SCCEEEESSSCCSSSHHHHHHHHHHHHHHSSSCCCSSEEEEESSTTHH
T ss_pred CCCEEEEEcCCCCcchHHHHHHHHHHHHHHHHhcCCCcEEEEcCCHHH
Confidence 4456788898 533233333333 34688 58888999753
No 386
>2fp3_A Caspase NC; apoptosis, initiator caspase activation, dimerization, active site conformation, hydrolysis/apoptosis complex; 2.50A {Drosophila melanogaster}
Probab=42.90 E-value=53 Score=25.86 Aligned_cols=47 Identities=6% Similarity=-0.018 Sum_probs=38.2
Q ss_pred CcEEEEecc------------HHHHHHHHHHHHhCCCeeEEecCCCCHHHHHHHHHHHhc
Q psy437 35 QSGIVYCLT------------RKECDSVAAALAQERINAISYHAGLADKLRNEVQMKWIS 82 (184)
Q Consensus 35 ~~~IIf~~t------------r~~~e~la~~L~~~gi~~~~~hg~l~~~~R~~~~~~f~~ 82 (184)
+-+||+++. ..+++.+++.|+..|+.+. .+-+++.++-.+.+++|..
T Consensus 62 g~aLIInN~~F~~~~~~R~Gt~~D~~~L~~~f~~LGF~V~-~~~dlt~~em~~~l~~f~~ 120 (316)
T 2fp3_A 62 GVLLMVNIMDYPDQNRRRIGAEKDSKSLIHLFQELNFTIF-PYGNVNQDQFFKLLTMVTS 120 (316)
T ss_dssp EEEEEEECCCCSSTTSCCTTHHHHHHHHHHHHHHTTEEEE-EECSCCHHHHHHHHHHHHT
T ss_pred cEEEEEeCcccCCCCCCCCCcHHHHHHHHHHHHHCCCEEE-EccCCCHHHHHHHHHHHHH
Confidence 457887765 3789999999999999875 5568999988888888864
No 387
>2bon_A Lipid kinase; DAG kinase, transferase; 1.90A {Escherichia coli} SCOP: e.52.1.2 PDB: 2jgr_A 2p1r_A
Probab=42.89 E-value=1.2e+02 Score=23.68 Aligned_cols=94 Identities=9% Similarity=-0.050 Sum_probs=59.3
Q ss_pred cEEEEeccH----HHHHHHHHHHHhCCCeeEEecCCCCHHHHHHHHHHHhccCceEEEEEeecccHHHHHHHHH----hc
Q psy437 36 SGIVYCLTR----KECDSVAAALAQERINAISYHAGLADKLRNEVQMKWISNKVHVGHWTVVSKECDSVAAALA----QE 107 (184)
Q Consensus 36 ~~IIf~~tr----~~~e~la~~L~~~gi~~~~~hg~l~~~~R~~~~~~f~~g~~~vlVaT~tr~~~e~~a~gL~----~~ 107 (184)
+..|++|.. +..+.+...|.+.|+.+..+...-..... ....+........||+.-.-+.+-.++++|. ..
T Consensus 31 ~~~vi~Np~sg~~~~~~~i~~~l~~~g~~~~~~~t~~~~~~~-~~~~~~~~~~~d~vvv~GGDGTl~~v~~~l~~~~~~~ 109 (332)
T 2bon_A 31 ASLLILNGKSTDNLPLREAIMLLREEGMTIHVRVTWEKGDAA-RYVEEARKFGVATVIAGGGDGTINEVSTALIQCEGDD 109 (332)
T ss_dssp CEEEEECSSSTTCHHHHHHHHHHHTTTCCEEEEECCSTTHHH-HHHHHHHHHTCSEEEEEESHHHHHHHHHHHHHCCSSC
T ss_pred eEEEEECCCCCCCchHHHHHHHHHHcCCcEEEEEecCcchHH-HHHHHHHhcCCCEEEEEccchHHHHHHHHHhhcccCC
Confidence 455555533 34567788888888877655432121222 2233344445788999999999999999997 56
Q ss_pred CCcEEEee----------CCCChHHHHHHHHHh
Q psy437 108 RINAISYH----------AGLADKLRNEVQMKW 130 (184)
Q Consensus 108 gi~~~vih----------~~~p~~~r~~~~~~f 130 (184)
++...++. .++|.+....+....
T Consensus 110 ~~plgiiP~Gt~N~fa~~l~i~~~~~~al~~i~ 142 (332)
T 2bon_A 110 IPALGILPLGTANDFATSVGIPEALDKALKLAI 142 (332)
T ss_dssp CCEEEEEECSSSCHHHHHTTCCSSHHHHHHHHH
T ss_pred CCeEEEecCcCHHHHHHhcCCCCCHHHHHHHHH
Confidence 77756663 445666666555543
No 388
>1t5b_A Acyl carrier protein phosphodiesterase; structural genomics, FMN, alpha/beta/alpha sandwich, PSI, protein structure initiative; HET: FMN; 1.40A {Salmonella typhimurium} SCOP: c.23.5.3 PDB: 1tik_A 2z98_A* 2d5i_A* 1v4b_A* 2z9b_A* 2z9c_A* 2z9d_A*
Probab=42.53 E-value=85 Score=21.95 Aligned_cols=19 Identities=16% Similarity=0.244 Sum_probs=16.7
Q ss_pred EeeCCCChHHHHHHHHHhh
Q psy437 113 SYHAGLADKLRNEVQMKWI 131 (184)
Q Consensus 113 vih~~~p~~~r~~~~~~f~ 131 (184)
+|++++|...+.++-+.+.
T Consensus 96 ~y~~~~p~~lK~~iD~~~~ 114 (201)
T 1t5b_A 96 MYNFNIPTQLKNYFDLIAR 114 (201)
T ss_dssp CBTTBCCHHHHHHHHHHCC
T ss_pred cccCcCCHHHHHHHHHhee
Confidence 6899999999999999863
No 389
>2qu7_A Putative transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 2.30A {Staphylococcus saprophyticus subsp}
Probab=42.51 E-value=43 Score=24.90 Aligned_cols=16 Identities=0% Similarity=-0.022 Sum_probs=9.0
Q ss_pred ccHHHHHHHHHhcCCc
Q psy437 95 KECDSVAAALAQERIN 110 (184)
Q Consensus 95 ~~~e~~a~gL~~~gi~ 110 (184)
.....+++.|-..|.+
T Consensus 108 ~~g~~a~~~L~~~G~~ 123 (288)
T 2qu7_A 108 EAAYIATKRVLESTCK 123 (288)
T ss_dssp HHHHHHHHHHHTSSCC
T ss_pred HHHHHHHHHHHHcCCC
Confidence 3455566666555554
No 390
>2fsx_A RV0390, COG0607: rhodanese-related sulfurtransferase; RV0390 BR SAD DATA with FBAR, structural genomics, PSI; 1.80A {Mycobacterium tuberculosis}
Probab=42.31 E-value=28 Score=23.66 Aligned_cols=38 Identities=13% Similarity=0.067 Sum_probs=29.6
Q ss_pred cCceEEEEEeecccHHHHHHHHHhcCCc-EEEeeCCCCh
Q psy437 83 NKVHVGHWTVVSKECDSVAAALAQERIN-AISYHAGLAD 120 (184)
Q Consensus 83 g~~~vlVaT~tr~~~e~~a~gL~~~gi~-~~vih~~~p~ 120 (184)
...+|+|+|.+-.....+|..|...|+. +.++.+|+..
T Consensus 79 ~~~~ivvyC~~G~rS~~aa~~L~~~G~~~v~~l~GG~~~ 117 (148)
T 2fsx_A 79 HERPVIFLCRSGNRSIGAAEVATEAGITPAYNVLDGFEG 117 (148)
T ss_dssp --CCEEEECSSSSTHHHHHHHHHHTTCCSEEEETTTTTC
T ss_pred CCCEEEEEcCCChhHHHHHHHHHHcCCcceEEEcCChhh
Confidence 3457888888777788899999999984 7888899853
No 391
>1aba_A Glutaredoxin; electron transport; HET: MES; 1.45A {Enterobacteria phage T4} SCOP: c.47.1.1 PDB: 1aaz_A 1de1_A 1de2_A
Probab=42.21 E-value=55 Score=19.70 Aligned_cols=47 Identities=13% Similarity=0.042 Sum_probs=30.4
Q ss_pred cHHHHHHHHHHHHhCCCeeEEecCC-----CCHHHHHHHHHHHhcc-----CceEEE
Q psy437 43 TRKECDSVAAALAQERINAISYHAG-----LADKLRNEVQMKWISN-----KVHVGH 89 (184)
Q Consensus 43 tr~~~e~la~~L~~~gi~~~~~hg~-----l~~~~R~~~~~~f~~g-----~~~vlV 89 (184)
++..|......|.+.|++...+.=. .+++.+..+.+..-.. .++.|+
T Consensus 13 ~Cp~C~~ak~~L~~~gi~y~~idI~~~~~~~~~~~~~~l~~~~g~~~~~~~tvP~v~ 69 (87)
T 1aba_A 13 KCGPCDNAKRLLTVKKQPFEFINIMPEKGVFDDEKIAELLTKLGRDTQIGLTMPQVF 69 (87)
T ss_dssp CCHHHHHHHHHHHHTTCCEEEEESCSBTTBCCHHHHHHHHHHHTCSCCTTCCSCEEE
T ss_pred cCccHHHHHHHHHHcCCCEEEEEeeccccccCHHHHHHHHHHhCCCCCCCCccCEEE
Confidence 5678889999999999886665544 4455555555444333 455554
No 392
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=42.07 E-value=97 Score=22.79 Aligned_cols=61 Identities=7% Similarity=0.060 Sum_probs=39.4
Q ss_pred HHHHHhcc--CceEEEEEeecccHHHHHHHHH----hcCCcEEEeeCCCChHHHHHHHHHhhCCCceEEEE
Q psy437 76 VQMKWISN--KVHVGHWTVVSKECDSVAAALA----QERINAISYHAGLADKLRNEVQMKWISNKVHLYNV 140 (184)
Q Consensus 76 ~~~~f~~g--~~~vlVaT~tr~~~e~~a~gL~----~~gi~~~vih~~~p~~~r~~~~~~f~~~~~~v~va 140 (184)
+++.+..+ ..++||.++++.-+..++..+. ..++++.+++++.+........ .+...|+++
T Consensus 101 il~~l~~~~~~~~~lil~Ptr~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~I~v~ 167 (249)
T 3ber_A 101 ILNALLETPQRLFALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLAL----AKKPHIIIA 167 (249)
T ss_dssp HHHHHHHSCCSSCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEEECTTSCHHHHHHHH----HTCCSEEEE
T ss_pred HHHHHhcCCCCceEEEEeCCHHHHHHHHHHHHHHhccCCeeEEEEECCCChHHHHHHh----cCCCCEEEE
Confidence 34444433 4579999999977766665553 3388888899998865543222 245677777
No 393
>3r1i_A Short-chain type dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.95A {Mycobacterium marinum}
Probab=41.79 E-value=1.1e+02 Score=22.97 Aligned_cols=70 Identities=11% Similarity=0.038 Sum_probs=45.7
Q ss_pred HHHHHHHHhhcCCCcEEEEeccHHHHHHHHHHHHhCCCeeEEecCCCCHHH-HHHHHHHHhc--cCceEEEEEee
Q psy437 22 KEVISLIKAKYSGQSGIVYCLTRKECDSVAAALAQERINAISYHAGLADKL-RNEVQMKWIS--NKVHVGHWTVV 93 (184)
Q Consensus 22 ~~L~~~l~~~~~~~~~IIf~~tr~~~e~la~~L~~~gi~~~~~hg~l~~~~-R~~~~~~f~~--g~~~vlVaT~t 93 (184)
..+...|.+ .+...++...+.+..+.+.+.+...+-++..+.++++..+ -....++... |.+.+||..-+
T Consensus 46 ~aia~~la~--~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~~~g~iD~lvnnAg 118 (276)
T 3r1i_A 46 KKVALAYAE--AGAQVAVAARHSDALQVVADEIAGVGGKALPIRCDVTQPDQVRGMLDQMTGELGGIDIAVCNAG 118 (276)
T ss_dssp HHHHHHHHH--TTCEEEEEESSGGGGHHHHHHHHHTTCCCEEEECCTTCHHHHHHHHHHHHHHHSCCSEEEECCC
T ss_pred HHHHHHHHH--CCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHHcCCCCEEEECCC
Confidence 345555544 4556677777777788888888877777888888887543 3334444332 57888887554
No 394
>3gr1_A Protein PRGH; type III secretion system, inner membrane protein, cell membrane, membrane, transmembrane, virulence; 2.80A {Salmonella typhimurium}
Probab=41.67 E-value=1.1e+02 Score=22.99 Aligned_cols=82 Identities=12% Similarity=0.025 Sum_probs=54.6
Q ss_pred CCcEEEEeccHHHHHHHHHHHHhCC--CeeEEecCCCCHHHHHHHHHHHhccCceEE--EEEeecccHHHHHHHHHhcCC
Q psy437 34 GQSGIVYCLTRKECDSVAAALAQER--INAISYHAGLADKLRNEVQMKWISNKVHVG--HWTVVSKECDSVAAALAQERI 109 (184)
Q Consensus 34 ~~~~IIf~~tr~~~e~la~~L~~~g--i~~~~~hg~l~~~~R~~~~~~f~~g~~~vl--VaT~tr~~~e~~a~gL~~~gi 109 (184)
.+...|+++|-.++++..+.|.+.+ -++.+. ..++....+++|.....+.| ...+ |+.|.-
T Consensus 26 d~~~yVla~~qrd~~W~rq~L~k~~~~~~~~V~----~~~~~~~~i~~~l~~~~P~l~~~~i~-----------l~~P~~ 90 (227)
T 3gr1_A 26 DKMLYVAAQNERDTLWARQVLARGDYDKNARVI----NENEENKRISIWLDTYYPQLAYYRIH-----------FDEPRK 90 (227)
T ss_dssp TSCEEEECSSHHHHHHHHHHHHHTTCTTTEEEE----CHHHHHHHHHHHHHHHCTTCCEEEEE-----------CSSTTS
T ss_pred CCcEEEEEccccHHHHHHHHHHhcCCcCCeEEE----ehHHHHHHHHHHHHhcCCceEEEEEE-----------cCCCCC
Confidence 3457889999999999999998876 344444 33444455555555555544 3334 666666
Q ss_pred cEEEee---CCCChHHHHHHHHHh
Q psy437 110 NAISYH---AGLADKLRNEVQMKW 130 (184)
Q Consensus 110 ~~~vih---~~~p~~~r~~~~~~f 130 (184)
+++.+. ..+|+..+..+.+..
T Consensus 91 Pvl~l~~~r~~~~~~~~~~L~~~l 114 (227)
T 3gr1_A 91 PVFWLSRQRNTMSKKELEVLSQKL 114 (227)
T ss_dssp CEEEEETTTCCCCHHHHHHHHHHH
T ss_pred CEEEEEeccccCCHHHHHHHHHHH
Confidence 766666 448888888877763
No 395
>3d8t_A Uroporphyrinogen-III synthase; heme biosynthesis, lyase; 1.60A {Thermus thermophilus} PDB: 3d8r_A 3d8s_A 3d8n_A
Probab=40.89 E-value=43 Score=25.58 Aligned_cols=58 Identities=12% Similarity=0.017 Sum_probs=37.2
Q ss_pred EEEEeccHHHHHHHHHHHHhCCCeeEE---ecCCCCHHHHHHHHHHHhccCceEEEEEeec
Q psy437 37 GIVYCLTRKECDSVAAALAQERINAIS---YHAGLADKLRNEVQMKWISNKVHVGHWTVVS 94 (184)
Q Consensus 37 ~IIf~~tr~~~e~la~~L~~~gi~~~~---~hg~l~~~~R~~~~~~f~~g~~~vlVaT~tr 94 (184)
.|++.......+.+.+.|.+.|+.+.. |.-.-....-..+.+.+..+...++++|++.
T Consensus 158 ~vLi~r~~~~~~~L~~~L~~~G~~v~~~~~Y~~~~~~~~~~~~~~~l~~~~~d~v~FtS~~ 218 (286)
T 3d8t_A 158 VAALQLYGKPLPLLENALAERGYRVLPLMPYRHLPDPEGILRLEEAVLRGEVDALAFVAAI 218 (286)
T ss_dssp EEEEECSSSCCHHHHHHHHHTTCEEEEECSEEEEECHHHHHHHHHHHHTTCCSEEEESSHH
T ss_pred eEEEEccCcccHHHHHHHHHCCCEEEEEEEEEEecCcccHHHHHHHHHcCCCCEEEEECHH
Confidence 455555555567788999988876544 3322222233555667777888889988844
No 396
>4f2d_A L-arabinose isomerase; structural genomics, PSI-1, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; HET: MSE RB0; 2.30A {Escherichia coli} PDB: 2ajt_A 2hxg_A
Probab=40.80 E-value=1.5e+02 Score=24.95 Aligned_cols=72 Identities=11% Similarity=0.105 Sum_probs=50.8
Q ss_pred HHHHHHHHHHHhCC-CeeEEecCCC--CHHHHHHHHHHH-hccCce-EEEEEeecccHHHHHHHHHhcCCcEEEeeC
Q psy437 45 KECDSVAAALAQER-INAISYHAGL--ADKLRNEVQMKW-ISNKVH-VGHWTVVSKECDSVAAALAQERINAISYHA 116 (184)
Q Consensus 45 ~~~e~la~~L~~~g-i~~~~~hg~l--~~~~R~~~~~~f-~~g~~~-vlVaT~tr~~~e~~a~gL~~~gi~~~vih~ 116 (184)
+.++.+++.|...+ +++.....++ +.++-.++.++| ...++. ||+.-.|+.....+++++..-+.+++.+|-
T Consensus 29 ~~~~~~~~~l~~~~~l~~~vv~~g~v~t~~~~~~~~~~~n~~~~vdgvi~~~~TFs~a~~~i~~l~~l~~PvL~~~~ 105 (500)
T 4f2d_A 29 QHAEHVVNALNTEAKLPCKLVLKPLGTTPDEITAICRDANYDDRCAGLVVWLHTFSPAKMWINGLTMLNKPLLQFHT 105 (500)
T ss_dssp HHHHHHHHHHHHHTCCSSEEEECCCBCSHHHHHHHHHHHHHCTTEEEEEEECCSCCCTHHHHHHHHHCCSCEEEEEC
T ss_pred HHHHHHHHHhccccCCCeEEEecCcCCCHHHHHHHHHHhccccCCcEEEEeCCcCccHHHHHHHHHhcCCCEEEEeC
Confidence 34567777787653 4544444443 456677788888 666664 567778899888999999998999777664
No 397
>4ehd_A Caspase-3; caspase, apoptosis, allosteric inhibition; 1.58A {Homo sapiens} PDB: 4ehk_A 4ehf_A 4ehn_A 1cp3_A 4ehh_A 4eha_A 4ehl_A 1i3o_A
Probab=40.41 E-value=1.2e+02 Score=23.23 Aligned_cols=40 Identities=8% Similarity=0.027 Sum_probs=33.3
Q ss_pred cHHHHHHHHHHHHhCCCeeEEecCCCCHHHHHHHHHHHhcc
Q psy437 43 TRKECDSVAAALAQERINAISYHAGLADKLRNEVQMKWISN 83 (184)
Q Consensus 43 tr~~~e~la~~L~~~gi~~~~~hg~l~~~~R~~~~~~f~~g 83 (184)
|..+++.+++.|+..|+.+. .+-+++.++-.+.+++|...
T Consensus 67 t~~D~~~L~~~f~~LGF~V~-~~~dlt~~em~~~l~~f~~~ 106 (277)
T 4ehd_A 67 TDVDAANLRETFRNLKYEVR-NKNDLTREEIVELMRDVSKE 106 (277)
T ss_dssp HHHHHHHHHHHHHHTTCEEE-EEESCCHHHHHHHHHHHHTS
T ss_pred CHHHHHHHHHHHHHCCCEEE-EecCCCHHHHHHHHHHHHhh
Confidence 34589999999999999976 45679999989999999763
No 398
>3h7a_A Short chain dehydrogenase; oxidoreductase, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.87A {Rhodopseudomonas palustris}
Probab=39.83 E-value=1.1e+02 Score=22.49 Aligned_cols=30 Identities=13% Similarity=-0.002 Sum_probs=19.9
Q ss_pred CcEEEEeccHHHHHHHHHHHHhCCCeeEEe
Q psy437 35 QSGIVYCLTRKECDSVAAALAQERINAISY 64 (184)
Q Consensus 35 ~~~IIf~~tr~~~e~la~~L~~~gi~~~~~ 64 (184)
..++|.-.+.---..++..|.+.|.++...
T Consensus 8 k~vlVTGas~GIG~aia~~l~~~G~~V~~~ 37 (252)
T 3h7a_A 8 ATVAVIGAGDYIGAEIAKKFAAEGFTVFAG 37 (252)
T ss_dssp CEEEEECCSSHHHHHHHHHHHHTTCEEEEE
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEE
Confidence 445566567667777777777777765544
No 399
>1ycg_A Nitric oxide reductase; DIIRON site, oxidoreductase; HET: FMN; 2.80A {Moorella thermoacetica} SCOP: c.23.5.1 d.157.1.3 PDB: 1ycf_A* 1ych_A*
Probab=39.69 E-value=96 Score=24.42 Aligned_cols=15 Identities=0% Similarity=-0.062 Sum_probs=9.5
Q ss_pred eeCCCChHHHHHHHH
Q psy437 114 YHAGLADKLRNEVQM 128 (184)
Q Consensus 114 ih~~~p~~~r~~~~~ 128 (184)
|++++|...++++.+
T Consensus 313 y~~~~~~~~~~~l~~ 327 (398)
T 1ycg_A 313 INNDILPVVSPLLDD 327 (398)
T ss_dssp BTTBCCGGGHHHHHH
T ss_pred cCccchHHHHHHHHH
Confidence 566666666666554
No 400
>1qxn_A SUD, sulfide dehydrogenase; polysulfide-sulfur transferase, homodimer; NMR {Wolinella succinogenes} SCOP: c.46.1.3
Probab=39.57 E-value=26 Score=23.61 Aligned_cols=37 Identities=8% Similarity=0.072 Sum_probs=29.9
Q ss_pred cCceEEEEEeecccHHHHHHHHHhcCCc-EEEeeCCCC
Q psy437 83 NKVHVGHWTVVSKECDSVAAALAQERIN-AISYHAGLA 119 (184)
Q Consensus 83 g~~~vlVaT~tr~~~e~~a~gL~~~gi~-~~vih~~~p 119 (184)
...+|+|+|.+-.....+|..|...|+. +.++.+|+.
T Consensus 81 ~~~~ivvyC~~G~rS~~aa~~L~~~G~~~v~~l~GG~~ 118 (137)
T 1qxn_A 81 PEKPVVVFCKTAARAALAGKTLREYGFKTIYNSEGGMD 118 (137)
T ss_dssp TTSCEEEECCSSSCHHHHHHHHHHHTCSCEEEESSCHH
T ss_pred CCCeEEEEcCCCcHHHHHHHHHHHcCCcceEEEcCcHH
Confidence 3457899998888888999999999984 677888864
No 401
>1wcw_A Uroporphyrinogen III synthase; congenital erythropoietic porph structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.30A {Thermus thermophilus} PDB: 1wd7_A 1wcx_A
Probab=39.55 E-value=41 Score=25.07 Aligned_cols=58 Identities=12% Similarity=0.028 Sum_probs=35.6
Q ss_pred EEEEeccHHHHHHHHHHHHhCCCeeEE---ecCCCCHHHHHHHHHHHhccCceEEEEEeec
Q psy437 37 GIVYCLTRKECDSVAAALAQERINAIS---YHAGLADKLRNEVQMKWISNKVHVGHWTVVS 94 (184)
Q Consensus 37 ~IIf~~tr~~~e~la~~L~~~gi~~~~---~hg~l~~~~R~~~~~~f~~g~~~vlVaT~tr 94 (184)
.|.+.......+.+.+.|.+.|+.+.. |.-.-....-....+.+..++..++++|++.
T Consensus 133 ~vL~~r~~~~~~~L~~~L~~~G~~v~~~~~Y~~~~~~~~~~~~~~~l~~~~~d~v~ftS~~ 193 (261)
T 1wcw_A 133 VAALQLYGKPLPLLENALAERGYRVLPLMPYRHLPDPEGILRLEEALLRGEVDALAFVAAI 193 (261)
T ss_dssp EEEEECCSSCCHHHHHHHHHTTEEEEEECSEEEEECHHHHHHHHHHHHHTCCSEEEECSHH
T ss_pred eEEEEccCcccHHHHHHHHHCCCEEEEEeeEEEecCCccHHHHHHHHHcCCCCEEEEECHH
Confidence 455554555567788888888876543 3222222223455566777888888888843
No 402
>3lop_A Substrate binding periplasmic protein; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.55A {Ralstonia solanacearum}
Probab=39.54 E-value=1.1e+02 Score=23.53 Aligned_cols=96 Identities=10% Similarity=0.067 Sum_probs=53.9
Q ss_pred hHHHHHHHHHhhcCCCcEEEEeccH---HHHHHHHHHHHhCCCeeE---EecCCCCHHHHHHHHHHHhccCceEEEEEee
Q psy437 20 VLKEVISLIKAKYSGQSGIVYCLTR---KECDSVAAALAQERINAI---SYHAGLADKLRNEVQMKWISNKVHVGHWTVV 93 (184)
Q Consensus 20 k~~~L~~~l~~~~~~~~~IIf~~tr---~~~e~la~~L~~~gi~~~---~~hg~l~~~~R~~~~~~f~~g~~~vlVaT~t 93 (184)
-...+.+++.+.....-++|+.++. ...+.+.+.|.+.|+.+. .+..+- .+-...+.+++.....+|+++..
T Consensus 128 ~~~~~~~~l~~~g~~~iaii~~~~~~g~~~~~~~~~~~~~~G~~v~~~~~~~~~~--~d~~~~~~~l~~~~~d~v~~~~~ 205 (364)
T 3lop_A 128 EIDKMITALVTIGVTRIGVLYQEDALGKEAITGVERTLKAHALAITAMASYPRNT--ANVGPAVDKLLAADVQAIFLGAT 205 (364)
T ss_dssp HHHHHHHHHHHTTCCCEEEEEETTHHHHHHHHHHHHHHHTTTCCCSEEEEECTTS--CCCHHHHHHHHHSCCSEEEEESC
T ss_pred HHHHHHHHHHHcCCceEEEEEeCchhhHHHHHHHHHHHHHcCCcEEEEEEecCCC--ccHHHHHHHHHhCCCCEEEEecC
Confidence 3455666665431233355665443 234455566667777642 233221 12234455666666777777665
Q ss_pred cccHHHHHHHHHhcCCcEEEeeCC
Q psy437 94 SKECDSVAAALAQERINAISYHAG 117 (184)
Q Consensus 94 r~~~e~~a~gL~~~gi~~~vih~~ 117 (184)
-.++-.+.+.+...|++.-++-.+
T Consensus 206 ~~~a~~~~~~~~~~g~~~~~i~~~ 229 (364)
T 3lop_A 206 AEPAAQFVRQYRARGGEAQLLGLS 229 (364)
T ss_dssp HHHHHHHHHHHHHTTCCCEEEECT
T ss_pred cHHHHHHHHHHHHcCCCCeEEEec
Confidence 556667777888888875555443
No 403
>1jx6_A LUXP protein; protein-ligand complex, signaling protein; HET: AI2; 1.50A {Vibrio harveyi} SCOP: c.93.1.1 PDB: 1zhh_A* 2hj9_A*
Probab=39.49 E-value=1.2e+02 Score=22.96 Aligned_cols=69 Identities=12% Similarity=0.002 Sum_probs=40.9
Q ss_pred HHHHHHHHHHhCCCeeEEe--cCC--CCHHHHHHHHHHHhccCceEEEEEeecccHHHHHHHHHhcCCcEEEe
Q psy437 46 ECDSVAAALAQERINAISY--HAG--LADKLRNEVQMKWISNKVHVGHWTVVSKECDSVAAALAQERINAISY 114 (184)
Q Consensus 46 ~~e~la~~L~~~gi~~~~~--hg~--l~~~~R~~~~~~f~~g~~~vlVaT~tr~~~e~~a~gL~~~gi~~~vi 114 (184)
...-+.+.+.+.|+.+... .++ -+.+.....++.+.+..+..||........+.....+...|++++++
T Consensus 62 ~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~~~~~~~~~~ip~V~~ 134 (342)
T 1jx6_A 62 NIASFEKRLYKLNINYQLNQVFTRPNADIKQQSLSLMEALKSKSDYLIFTLDTTRHRKFVEHVLDSTNTKLIL 134 (342)
T ss_dssp HHHHHHHHHHHTTCCEEEEEEECCTTCCHHHHHHHHHHHHHTTCSEEEECCSSSTTHHHHHHHHHHCSCEEEE
T ss_pred HHHHHHHHHHHcCCeEEEEecCCCCccCHHHHHHHHHHHHhcCCCEEEEeCChHhHHHHHHHHHHcCCCEEEE
Confidence 3444555666778876554 343 45555556778888777877766332222234445566678885555
No 404
>3gr0_A Protein PRGH; type III secretion system, inner membrane protein, cell MEMB membrane, transmembrane, virulence, membrane protein; 2.30A {Salmonella typhimurium} PDB: 2y9j_A
Probab=39.29 E-value=1.1e+02 Score=22.40 Aligned_cols=92 Identities=12% Similarity=0.045 Sum_probs=60.9
Q ss_pred CCcEEEEeccHHHHHHHHHHHHhCCC--eeEEecCCCCHHHHHHHHHHHhccCceEE--EEEeecccHHHHHHHHHhcCC
Q psy437 34 GQSGIVYCLTRKECDSVAAALAQERI--NAISYHAGLADKLRNEVQMKWISNKVHVG--HWTVVSKECDSVAAALAQERI 109 (184)
Q Consensus 34 ~~~~IIf~~tr~~~e~la~~L~~~gi--~~~~~hg~l~~~~R~~~~~~f~~g~~~vl--VaT~tr~~~e~~a~gL~~~gi 109 (184)
.+...|+++|-.++++..+.|-+.++ ++.+. +.++....+++|.....+.| ..-+ |+.|.-
T Consensus 26 D~~iyVla~~qrd~~W~rQ~L~k~~~~e~~~Vi----~~~~e~~~i~~~L~~~~P~l~~~~i~-----------l~~P~~ 90 (197)
T 3gr0_A 26 DKMLYVAAQNERDTLWARQVLARGDYDKNARVI----NENEENKRISIWLDTYYPQLAYYRIH-----------FDEPRK 90 (197)
T ss_dssp TSCEEEECSSHHHHHHHHHHHHHHTCTTTEEEE----CHHHHHHHHHHHHHHHSTTCCEEEEE-----------CSSTTS
T ss_pred CCcEEEEEccccHHHHHHHHHHhcCCCCCcEEe----ehHHHHHHHHHHHHhcCCceeEEEEe-----------cCCCCC
Confidence 34578899999999999999987653 34333 24455555666666555555 3334 677777
Q ss_pred cEEEeeCC---CChHHHHHHHHHhhC-----CCceEEEE
Q psy437 110 NAISYHAG---LADKLRNEVQMKWIS-----NKVHLYNV 140 (184)
Q Consensus 110 ~~~vih~~---~p~~~r~~~~~~f~~-----~~~~v~va 140 (184)
+++.+... +|+..+..+.+..+. .++.|...
T Consensus 91 P~l~ls~~r~~l~~~~~~~L~~~l~~~~pya~~v~i~~~ 129 (197)
T 3gr0_A 91 PVFWLSRQRNTMSKKELEVLSQKLRALMPYADSVNITLM 129 (197)
T ss_dssp CEEEEESSSCCCCHHHHHHHHHHHHHHCTTCSCCEEEEE
T ss_pred CEEEEEeccccCCHHHHHHHHHHHHHhCCccceeEEEEc
Confidence 76767644 999888888877332 34555554
No 405
>1yt8_A Thiosulfate sulfurtransferase; rhodanase domains, cyanide detoxification, structural genomics, PSI, protein structure initiative; 1.90A {Pseudomonas aeruginosa} SCOP: c.46.1.2 c.46.1.2 c.46.1.2 c.46.1.2
Probab=38.98 E-value=22 Score=30.06 Aligned_cols=46 Identities=7% Similarity=0.012 Sum_probs=33.7
Q ss_pred HHHHHHhhcCCCcEEEEeccHHHHHHHHHHHHhCCC-eeEEecCCCC
Q psy437 24 VISLIKAKYSGQSGIVYCLTRKECDSVAAALAQERI-NAISYHAGLA 69 (184)
Q Consensus 24 L~~~l~~~~~~~~~IIf~~tr~~~e~la~~L~~~gi-~~~~~hg~l~ 69 (184)
|...+.+..+..+.++||.+-..+...+..|...|+ ++..|.||+.
T Consensus 420 l~~~l~~l~~~~~ivv~C~sG~rs~~aa~~L~~~G~~~v~~l~GG~~ 466 (539)
T 1yt8_A 420 LKQALERLGTAERYVLTCGSSLLARFAVAEVQALSGKPVFLLDGGTS 466 (539)
T ss_dssp HHHHHHHHCCCSEEEEECSSSHHHHHHHHHHHHHHCSCEEEETTHHH
T ss_pred HHHHHHhCCCCCeEEEEeCCChHHHHHHHHHHHcCCCCEEEeCCcHH
Confidence 333343332456788899998888899999999888 5778888853
No 406
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=38.72 E-value=96 Score=22.30 Aligned_cols=53 Identities=13% Similarity=0.010 Sum_probs=34.2
Q ss_pred cCceEEEEEeecccHHHHHHHHHh----cCCcEEEeeCCCChHHHHHHHHHhhCCCceEEEE
Q psy437 83 NKVHVGHWTVVSKECDSVAAALAQ----ERINAISYHAGLADKLRNEVQMKWISNKVHLYNV 140 (184)
Q Consensus 83 g~~~vlVaT~tr~~~e~~a~gL~~----~gi~~~vih~~~p~~~r~~~~~~f~~~~~~v~va 140 (184)
...++||.++++.-+..++..+.. .++++..++++.+........ +...|+++
T Consensus 96 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-----~~~~iiv~ 152 (236)
T 2pl3_A 96 DGLGVLIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEAERI-----NNINILVC 152 (236)
T ss_dssp GCCCEEEECSSHHHHHHHHHHHHHHTTTSSCCEEEECCC--CHHHHHHH-----TTCSEEEE
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHhCCCCeeEEEEECCCCHHHHHHhC-----CCCCEEEE
Confidence 355789999999777777766643 357888899988765443221 34567776
No 407
>3imf_A Short chain dehydrogenase; structural genomics, infectious D center for structural genomics of infectious diseases, oxidoreductase, csgid; HET: MSE; 1.99A {Bacillus anthracis str}
Probab=38.17 E-value=1.2e+02 Score=22.34 Aligned_cols=70 Identities=6% Similarity=0.033 Sum_probs=47.4
Q ss_pred HHHHHHHHhhcCCCcEEEEeccHHHHHHHHHHHHhCCCeeEEecCCCCHHH-HHHHHHHHhc--cCceEEEEEee
Q psy437 22 KEVISLIKAKYSGQSGIVYCLTRKECDSVAAALAQERINAISYHAGLADKL-RNEVQMKWIS--NKVHVGHWTVV 93 (184)
Q Consensus 22 ~~L~~~l~~~~~~~~~IIf~~tr~~~e~la~~L~~~gi~~~~~hg~l~~~~-R~~~~~~f~~--g~~~vlVaT~t 93 (184)
..+...|.+ .+...++...+.+..+.+...+...+-.+..+.++++..+ -....+...+ |.+.+||..-.
T Consensus 20 ~aia~~l~~--~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~id~lv~nAg 92 (257)
T 3imf_A 20 KGMATRFAK--EGARVVITGRTKEKLEEAKLEIEQFPGQILTVQMDVRNTDDIQKMIEQIDEKFGRIDILINNAA 92 (257)
T ss_dssp HHHHHHHHH--TTCEEEEEESCHHHHHHHHHHHCCSTTCEEEEECCTTCHHHHHHHHHHHHHHHSCCCEEEECCC
T ss_pred HHHHHHHHH--CCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHcCCCCEEEECCC
Confidence 345555544 4566777788888888888888877777888888887643 3334444332 67888887654
No 408
>3jvd_A Transcriptional regulators; structural genomics, PSI-2, sugar binding protein, transcrip regulation, protein structure initiative; 2.30A {Corynebacterium glutamicum}
Probab=37.65 E-value=54 Score=25.21 Aligned_cols=45 Identities=11% Similarity=-0.025 Sum_probs=28.3
Q ss_pred HHHHHHHHHhCCCeeEEecCCCCHHHHHHHHHHHhccCceEEEEEe
Q psy437 47 CDSVAAALAQERINAISYHAGLADKLRNEVQMKWISNKVHVGHWTV 92 (184)
Q Consensus 47 ~e~la~~L~~~gi~~~~~hg~l~~~~R~~~~~~f~~g~~~vlVaT~ 92 (184)
..-+.+.+.+.|+.+..+..+- .+.-...++.+....+..||..+
T Consensus 83 ~~gi~~~a~~~g~~~~~~~~~~-~~~~~~~~~~l~~~~vdGiIi~~ 127 (333)
T 3jvd_A 83 LQTIQQDLKAAGYQMLVAEANS-VQAQDVVMESLISIQAAGIIHVP 127 (333)
T ss_dssp HHHHHHHHHHHTCEEEEEECCS-HHHHHHHHHHHHHHTCSEEEECC
T ss_pred HHHHHHHHHHCCCEEEEECCCC-hHHHHHHHHHHHhCCCCEEEEcc
Confidence 4444555566788877766655 55555667777666666666555
No 409
>1e5d_A Rubredoxin\:oxygen oxidoreductase; oxygenreductase, DIIRON-centre, flavoproteins, lactamase-fold; HET: FMN; 2.5A {Desulfovibrio gigas} SCOP: c.23.5.1 d.157.1.3
Probab=37.51 E-value=1.5e+02 Score=23.31 Aligned_cols=50 Identities=10% Similarity=-0.049 Sum_probs=24.2
Q ss_pred ccHHHHHHHHHHHHhCCCeeEEecCCCCHHHHHHHHHHHhccCceEEEEEeec
Q psy437 42 LTRKECDSVAAALAQERINAISYHAGLADKLRNEVQMKWISNKVHVGHWTVVS 94 (184)
Q Consensus 42 ~tr~~~e~la~~L~~~gi~~~~~hg~l~~~~R~~~~~~f~~g~~~vlVaT~tr 94 (184)
+|++.++.+++.|...|+.+..+.-. ......+.+.+...+ -++++|++.
T Consensus 265 nt~~lA~~i~~~l~~~g~~v~~~~~~--~~~~~~~~~~~~~~d-~ii~gsp~~ 314 (402)
T 1e5d_A 265 STEKMARVLAESFRDEGCTVKLMWCK--ACHHSQIMSEISDAG-AVIVGSPTH 314 (402)
T ss_dssp HHHHHHHHHHHHHHHTTCEEEEEETT--TSCHHHHHHHHHTCS-EEEEECCCB
T ss_pred hHHHHHHHHHHHHHhCCCeEEEEECC--CCCHHHHHHHHHHCC-EEEEECCcc
Confidence 34555666666666666665555432 112223333333322 355666654
No 410
>3r2u_A Metallo-beta-lactamase family protein; structural genomics, for structural genomics of infectious diseases, csgid, HYDR; 2.10A {Staphylococcus aureus}
Probab=37.31 E-value=7.1 Score=32.51 Aligned_cols=38 Identities=18% Similarity=0.234 Sum_probs=0.0
Q ss_pred CCCcEEEEeccHHHHHHHHHHHHhCCC-eeEEecCCCCH
Q psy437 33 SGQSGIVYCLTRKECDSVAAALAQERI-NAISYHAGLAD 70 (184)
Q Consensus 33 ~~~~~IIf~~tr~~~e~la~~L~~~gi-~~~~~hg~l~~ 70 (184)
+..+.++||.+-..+...+..|...|+ ++..|-||+..
T Consensus 424 ~~~~iv~~C~~G~rs~~a~~~L~~~G~~~v~~l~GG~~~ 462 (466)
T 3r2u_A 424 KNDVIYVHCQSGIRSSIAIGILEHKGYHNIINVNEGYKD 462 (466)
T ss_dssp ---------------------------------------
T ss_pred CCCeEEEECCCChHHHHHHHHHHHcCCCCEEEecChHHH
Confidence 345688899998888889999999998 57788888764
No 411
>1wcw_A Uroporphyrinogen III synthase; congenital erythropoietic porph structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.30A {Thermus thermophilus} PDB: 1wd7_A 1wcx_A
Probab=37.16 E-value=1.2e+02 Score=22.31 Aligned_cols=57 Identities=9% Similarity=-0.056 Sum_probs=33.0
Q ss_pred CcEEEEeccHHHHHHHHHHHHhCCCeeEE-----ecCCCCHHHHHHHHHHHhccCceEEEEEeec
Q psy437 35 QSGIVYCLTRKECDSVAAALAQERINAIS-----YHAGLADKLRNEVQMKWISNKVHVGHWTVVS 94 (184)
Q Consensus 35 ~~~IIf~~tr~~~e~la~~L~~~gi~~~~-----~hg~l~~~~R~~~~~~f~~g~~~vlVaT~tr 94 (184)
++.|+.+.++. ++.+++.|.+.|..+.. +... +...-...++.+ .+....||+|+..
T Consensus 8 g~~vlvtr~~~-~~~l~~~L~~~G~~~~~~P~i~i~~~-~~~~l~~~~~~l-~~~~d~iiftS~~ 69 (261)
T 1wcw_A 8 AVRVAYAGLRR-KEAFKALAEKLGFTPLLFPVQATEKV-PVPEYRDQVRAL-AQGVDLFLATTGV 69 (261)
T ss_dssp CCEEEECCSTT-HHHHHHHHHHTTCEEEECCCEEEEEC-CGGGGHHHHHHH-HTCCSEEEECCHH
T ss_pred CCEEEEeCCCc-hHHHHHHHHHCCCcEEEeccEEEecC-CHHHHHHHHHhh-ccCCCEEEEeCHH
Confidence 45677777776 88899999888865432 1111 222222223332 2456788888843
No 412
>3re1_A Uroporphyrinogen-III synthetase; HEMD-like family, uroporphyrinogen III synthase, HMB, lyase; 2.50A {Pseudomonas syringae PV}
Probab=37.13 E-value=1.3e+02 Score=22.54 Aligned_cols=59 Identities=12% Similarity=0.015 Sum_probs=36.0
Q ss_pred CCcEEEEeccHHHHHHHHHHHHhCCCeeEEecC----CCCHH-HHHHHHHHHhccCceEEEEEeec
Q psy437 34 GQSGIVYCLTRKECDSVAAALAQERINAISYHA----GLADK-LRNEVQMKWISNKVHVGHWTVVS 94 (184)
Q Consensus 34 ~~~~IIf~~tr~~~e~la~~L~~~gi~~~~~hg----~l~~~-~R~~~~~~f~~g~~~vlVaT~tr 94 (184)
.++.|+.+..+..++.+++.|++.|..+..+-- ..+.. .-...+..+ ++...||+|+..
T Consensus 13 ~g~~IlvTRp~~~a~~l~~~L~~~G~~~~~~P~i~i~~~~~~~~l~~~l~~l--~~~d~vifTS~n 76 (269)
T 3re1_A 13 SAWRLLLTRPAEESAALARVLADAGIFSSSLPLLETEPLPLTPAQRSIIFEL--LNYSAVIVVSKP 76 (269)
T ss_dssp CCCEEEECSCHHHHHHHHHHHHTTTCEEEECCCCEEEECCCHHHHHHHHHTG--GGSSEEEECSHH
T ss_pred CCCEEEEeCChHHHHHHHHHHHHCCCCEEEcCCEEEecCCCcHHHHHHHHhc--cCCCEEEEECHH
Confidence 467788899999999999999998876543210 11111 111222222 456778888744
No 413
>2ql9_A Caspase-7; cysteine protease, apoptosis, thiol protease, zymogen, hydro hydrolase inhibitor complex; HET: CIT; 2.14A {Homo sapiens} PDB: 2ql7_A* 2ql5_A* 2qlb_A* 2qlf_A 2qlj_A* 3edr_A 3ibc_A 3ibf_A 1i51_A
Probab=37.08 E-value=1.1e+02 Score=21.78 Aligned_cols=40 Identities=13% Similarity=0.144 Sum_probs=32.2
Q ss_pred cHHHHHHHHHHHHhCCCeeEEecCCCCHHHHHHHHHHHhcc
Q psy437 43 TRKECDSVAAALAQERINAISYHAGLADKLRNEVQMKWISN 83 (184)
Q Consensus 43 tr~~~e~la~~L~~~gi~~~~~hg~l~~~~R~~~~~~f~~g 83 (184)
|..+++.+...|...|+.+..+ -+++.++-...+++|...
T Consensus 67 t~~D~~~L~~~F~~LgF~V~v~-~dlt~~em~~~l~~~s~~ 106 (173)
T 2ql9_A 67 TDKDAEALFKCFRSLGFDVIVY-NDCSCAKMQDLLKKASEE 106 (173)
T ss_dssp HHHHHHHHHHHHHHHTEEEEEE-ESCCHHHHHHHHHHHHTS
T ss_pred cHHHHHHHHHHHHHCCCEEEEE-eCCCHHHHHHHHHHHHHh
Confidence 4468999999999999998655 478888888888888653
No 414
>1jr2_A Uroporphyrinogen-III synthase; heme biosynthesis, HEAM biosynthesis, lyase; 1.84A {Homo sapiens} SCOP: c.113.1.1
Probab=36.99 E-value=93 Score=23.56 Aligned_cols=54 Identities=7% Similarity=0.001 Sum_probs=31.9
Q ss_pred eEEEEEeecccHHHHHHHHHhcCCcE---EEeeCCCChHHHHHHHHHhhC-CCceEEEE
Q psy437 86 HVGHWTVVSKECDSVAAALAQERINA---ISYHAGLADKLRNEVQMKWIS-NKVHLYNV 140 (184)
Q Consensus 86 ~vlVaT~tr~~~e~~a~gL~~~gi~~---~vih~~~p~~~r~~~~~~f~~-~~~~v~va 140 (184)
+||+... ...-+.++..|...|+.+ .+|.--.+......+.+.+.. +.+.+++.
T Consensus 159 ~vLi~rg-~~~r~~L~~~L~~~G~~v~~~~~Y~~~~~~~~~~~~~~~l~~~~~~d~v~f 216 (286)
T 1jr2_A 159 PLLFPCG-NLKREILPKALKDKGIAMESITVYQTVAHPGIQGNLNSYYSQQGVPASITF 216 (286)
T ss_dssp CEEEEES-CGGGCCHHHHHHTTTCCEEEEECEEEEECTTHHHHHHHHHHHHCSCSEEEE
T ss_pred eEEEECC-hhhHHHHHHHHHHCCCeeEEEEEEEEeeCCCcHHHHHHHHHhCCCCCEEEE
Confidence 5666443 334457888999888764 445544444444444455554 66666665
No 415
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=36.73 E-value=76 Score=22.90 Aligned_cols=52 Identities=8% Similarity=0.058 Sum_probs=36.6
Q ss_pred CceEEEEEeecccHHHHHHHHHh-----cCCcEEEeeCCCChHHHHHHHHHhhCCCceEEEE
Q psy437 84 KVHVGHWTVVSKECDSVAAALAQ-----ERINAISYHAGLADKLRNEVQMKWISNKVHLYNV 140 (184)
Q Consensus 84 ~~~vlVaT~tr~~~e~~a~gL~~-----~gi~~~vih~~~p~~~r~~~~~~f~~~~~~v~va 140 (184)
..++||.++++.-++.++..+.. .++++.++++|.+...+... + .+..|+|+
T Consensus 92 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~--~~~~Iiv~ 148 (230)
T 2oxc_A 92 STQILILAPTREIAVQIHSVITAIGIKMEGLECHVFIGGTPLSQDKTR---L--KKCHIAVG 148 (230)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTSCHHHHHHH---T--TSCSEEEE
T ss_pred CceEEEEeCCHHHHHHHHHHHHHHhcccCCceEEEEeCCCCHHHHHHh---c--cCCCEEEE
Confidence 45899999999777777766643 37888899999887654322 2 24677777
No 416
>3gaf_A 7-alpha-hydroxysteroid dehydrogenase; seattle structural genomics center for infectious disease, ssgcid, oxidoreductase, structural genomics; 2.20A {Brucella melitensis}
Probab=36.20 E-value=1.3e+02 Score=22.16 Aligned_cols=70 Identities=23% Similarity=0.232 Sum_probs=46.6
Q ss_pred HHHHHHHHhhcCCCcEEEEeccHHHHHHHHHHHHhCCCeeEEecCCCCHHH-HHHHHHHHhc--cCceEEEEEee
Q psy437 22 KEVISLIKAKYSGQSGIVYCLTRKECDSVAAALAQERINAISYHAGLADKL-RNEVQMKWIS--NKVHVGHWTVV 93 (184)
Q Consensus 22 ~~L~~~l~~~~~~~~~IIf~~tr~~~e~la~~L~~~gi~~~~~hg~l~~~~-R~~~~~~f~~--g~~~vlVaT~t 93 (184)
..+...|.+ .+...++...+.+..+.+.+.+...+-++..+.++++..+ -....+...+ |.+.+||..-.
T Consensus 26 ~~ia~~l~~--~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~id~lv~nAg 98 (256)
T 3gaf_A 26 RAIAGTFAK--AGASVVVTDLKSEGAEAVAAAIRQAGGKAIGLECNVTDEQHREAVIKAALDQFGKITVLVNNAG 98 (256)
T ss_dssp HHHHHHHHH--HTCEEEEEESSHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHSCCCEEEECCC
T ss_pred HHHHHHHHH--CCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHHcCCCCEEEECCC
Confidence 345555544 3456667778888888888888888888888888887643 3333333332 57888887643
No 417
>3d02_A Putative LACI-type transcriptional regulator; periplasmic sugar-binding protein, structura genomics; HET: MSE GOL; 1.30A {Klebsiella pneumoniae subsp}
Probab=35.97 E-value=1.3e+02 Score=22.22 Aligned_cols=8 Identities=25% Similarity=0.650 Sum_probs=3.1
Q ss_pred CCCeeEEe
Q psy437 57 ERINAISY 64 (184)
Q Consensus 57 ~gi~~~~~ 64 (184)
.++....+
T Consensus 60 ~~vdgiii 67 (303)
T 3d02_A 60 RKVDAITI 67 (303)
T ss_dssp TTCSEEEE
T ss_pred cCCCEEEE
Confidence 34443333
No 418
>3ucx_A Short chain dehydrogenase; ssgcid, seattle structural genomics center for infectious DI dehydrogenase, oxidoreductase; HET: 1PE; 1.85A {Mycobacterium smegmatis} SCOP: c.2.1.0
Probab=35.93 E-value=1.3e+02 Score=22.19 Aligned_cols=69 Identities=13% Similarity=0.101 Sum_probs=46.7
Q ss_pred HHHHHHHHhhcCCCcEEEEeccHHHHHHHHHHHHhCCCeeEEecCCCCHHH-HHHHHHHHhc--cCceEEEEEe
Q psy437 22 KEVISLIKAKYSGQSGIVYCLTRKECDSVAAALAQERINAISYHAGLADKL-RNEVQMKWIS--NKVHVGHWTV 92 (184)
Q Consensus 22 ~~L~~~l~~~~~~~~~IIf~~tr~~~e~la~~L~~~gi~~~~~hg~l~~~~-R~~~~~~f~~--g~~~vlVaT~ 92 (184)
..+...|.+ .+...++...+.+..+.+.+.+...+-++..+.++++..+ -....++... |.+.+||..-
T Consensus 25 ~aia~~l~~--~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~id~lv~nA 96 (264)
T 3ucx_A 25 TTLARRCAE--QGADLVLAARTVERLEDVAKQVTDTGRRALSVGTDITDDAQVAHLVDETMKAYGRVDVVINNA 96 (264)
T ss_dssp HHHHHHHHH--TTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHTSCCSEEEECC
T ss_pred HHHHHHHHH--CcCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHcCCCcEEEECC
Confidence 445555544 4556777788888888888888888888888888887643 2333333332 6788888654
No 419
>1pyo_A Caspase-2; apoptosis, caspase, alpha-beta, thiol protease, hydrolase-HY inhibitor complex; 1.65A {Homo sapiens} SCOP: c.17.1.1 PDB: 3rjm_A* 2p2c_A 3r5j_A 3r6g_A 3r6l_A 3r7b_A 3r7n_A 3r7s_A
Probab=35.90 E-value=98 Score=21.88 Aligned_cols=48 Identities=4% Similarity=-0.031 Sum_probs=38.2
Q ss_pred CCcEEEEecc--------------HHHHHHHHHHHHhCCCeeEEecCCCCHHHHHHHHHHHhc
Q psy437 34 GQSGIVYCLT--------------RKECDSVAAALAQERINAISYHAGLADKLRNEVQMKWIS 82 (184)
Q Consensus 34 ~~~~IIf~~t--------------r~~~e~la~~L~~~gi~~~~~hg~l~~~~R~~~~~~f~~ 82 (184)
.+-+||+.+. ..+++.+.+.|...|+.+.. +-+++.++-.+.+++|.+
T Consensus 33 rG~aLIinn~~F~~~~~l~~R~Gt~~D~~~L~~~f~~LgF~V~~-~~dlt~~em~~~l~~~~~ 94 (167)
T 1pyo_A 33 RGLALVLSNVHFTGEKELEFRSGGDVDHSTLVTLFKLLGYDVHV-LCDQTAQEMQEKLQNFAQ 94 (167)
T ss_dssp SEEEEEEECCCCCSSSCSCCCTTHHHHHHHHHHHHHHTTEEEEE-EESCCHHHHHHHHHHHHT
T ss_pred ceEEEEEeCcccCCCCCCccCCCcHHHHHHHHHHHHHCCCEEEE-eeCCCHHHHHHHHHHhhh
Confidence 3457888764 34899999999999998854 567898888888888876
No 420
>1kte_A Thioltransferase; redox-active center, electron transport, acetylation; 2.20A {Sus scrofa} SCOP: c.47.1.1 PDB: 1jhb_A 1b4q_A*
Probab=35.69 E-value=77 Score=19.51 Aligned_cols=55 Identities=13% Similarity=0.022 Sum_probs=33.8
Q ss_pred CCcEEEEe-ccHHHHHHHHHHHHhCCCe---eEEecCCCC---HHHHHHHHHHHhccCceEE
Q psy437 34 GQSGIVYC-LTRKECDSVAAALAQERIN---AISYHAGLA---DKLRNEVQMKWISNKVHVG 88 (184)
Q Consensus 34 ~~~~IIf~-~tr~~~e~la~~L~~~gi~---~~~~hg~l~---~~~R~~~~~~f~~g~~~vl 88 (184)
..+.++|. +++..|..+...|.+.++. ...+.-..+ ++.+..+.+.+-...++.+
T Consensus 11 ~~~v~~f~~~~C~~C~~~~~~L~~~~~~~~~~~~vdi~~~~~~~~~~~~l~~~~g~~~vP~i 72 (105)
T 1kte_A 11 PGKVVVFIKPTCPFCRKTQELLSQLPFKEGLLEFVDITATSDTNEIQDYLQQLTGARTVPRV 72 (105)
T ss_dssp TTCEEEEECSSCHHHHHHHHHHHHSCBCTTSEEEEEGGGSTTHHHHHHHHHHHHSCCCSCEE
T ss_pred cCCEEEEEcCCCHhHHHHHHHHHHcCCCCCccEEEEccCCCCHHHHHHHHHHHhCCCCcCeE
Confidence 34566664 6788999999999998877 655543333 2333444444444455554
No 421
>1vm6_A DHPR, dihydrodipicolinate reductase; TM1520, structural genomics, protein structure initiative, PSI, joint center for structu genomics; HET: NAD PG4; 2.27A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.3
Probab=35.64 E-value=1.4e+02 Score=22.41 Aligned_cols=79 Identities=9% Similarity=0.024 Sum_probs=48.9
Q ss_pred cEEEEeccHHHHHHHHHHHHhCCCeeEEecCCCCHHHHHHHHHHHhccCceEEEEEeec-------ccHHHHHHHHHhcC
Q psy437 36 SGIVYCLTRKECDSVAAALAQERINAISYHAGLADKLRNEVQMKWISNKVHVGHWTVVS-------KECDSVAAALAQER 108 (184)
Q Consensus 36 ~~IIf~~tr~~~e~la~~L~~~gi~~~~~hg~l~~~~R~~~~~~f~~g~~~vlVaT~tr-------~~~e~~a~gL~~~g 108 (184)
-.+|=..+.+.+....+...+.|++...-..|++.++. ..++.+.+ ++.++++.+-- +-++.+|+.|+.-+
T Consensus 55 DVvIDFT~P~a~~~~~~~~~~~g~~~ViGTTG~~~~~~-~~l~~~a~-~~~vv~apNfSlGvnll~~l~~~aA~~l~~yd 132 (228)
T 1vm6_A 55 DVVIDFSSPEALPKTVDLCKKYRAGLVLGTTALKEEHL-QMLRELSK-EVPVVQAYNFSIGINVLKRFLSELVKVLEDWD 132 (228)
T ss_dssp SEEEECSCGGGHHHHHHHHHHHTCEEEECCCSCCHHHH-HHHHHHTT-TSEEEECSCCCHHHHHHHHHHHHHHHHTTTSE
T ss_pred CEEEECCCHHHHHHHHHHHHHcCCCEEEeCCCCCHHHH-HHHHHHHh-hCCEEEeccccHHHHHHHHHHHHHHHhcCCCC
Confidence 45663345556666667777789998888888988655 44555543 47777666543 34778888883223
Q ss_pred CcEEEeeC
Q psy437 109 INAISYHA 116 (184)
Q Consensus 109 i~~~vih~ 116 (184)
+...=.|.
T Consensus 133 iEIiE~HH 140 (228)
T 1vm6_A 133 VEIVETHH 140 (228)
T ss_dssp EEEEEEEC
T ss_pred EEEEEcCC
Confidence 33222454
No 422
>1rli_A Trp repressor binding protein; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.80A {Bacillus subtilis} SCOP: c.23.5.6
Probab=35.42 E-value=1.1e+02 Score=21.06 Aligned_cols=17 Identities=18% Similarity=0.241 Sum_probs=14.7
Q ss_pred EeeCCCChHHHHHHHHH
Q psy437 113 SYHAGLADKLRNEVQMK 129 (184)
Q Consensus 113 vih~~~p~~~r~~~~~~ 129 (184)
+|++++|...+.++.+.
T Consensus 81 ~y~~~~p~~lK~~iD~~ 97 (184)
T 1rli_A 81 IYWFGMSGTLKLFIDRW 97 (184)
T ss_dssp CBTTBCCHHHHHHHHTH
T ss_pred ccccCCcHHHHHHHHHh
Confidence 68999999999988875
No 423
>4fo4_A Inosine 5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.03A {Vibrio cholerae o1 biovar el tor} PDB: 4ff0_A* 4hlv_A* 4fez_A
Probab=35.38 E-value=1.7e+02 Score=23.43 Aligned_cols=90 Identities=13% Similarity=0.114 Sum_probs=55.4
Q ss_pred HHHHHHHhCCCeeEEecCCCCHHHHHHHHHHHhc-cCceEEEEEeecccHHHHHHHHHhcCCcEEEee--CCCChHHHHH
Q psy437 49 SVAAALAQERINAISYHAGLADKLRNEVQMKWIS-NKVHVGHWTVVSKECDSVAAALAQERINAISYH--AGLADKLRNE 125 (184)
Q Consensus 49 ~la~~L~~~gi~~~~~hg~l~~~~R~~~~~~f~~-g~~~vlVaT~tr~~~e~~a~gL~~~gi~~~vih--~~~p~~~r~~ 125 (184)
.++..+...|- ..++|+.++.++....+++.++ +...+-+.+.+..+....+..|-..|+++.+++ .+.|...-+.
T Consensus 61 ~lA~avA~aGG-lg~i~~~~s~e~~~~~i~~vk~~~~l~vga~vg~~~~~~~~~~~lieaGvd~I~idta~G~~~~~~~~ 139 (366)
T 4fo4_A 61 RLAIALAQEGG-IGFIHKNMSIEQQAAQVHQVKISGGLRVGAAVGAAPGNEERVKALVEAGVDVLLIDSSHGHSEGVLQR 139 (366)
T ss_dssp HHHHHHHHTTC-EEEECSSSCHHHHHHHHHHHHTTTSCCCEEECCSCTTCHHHHHHHHHTTCSEEEEECSCTTSHHHHHH
T ss_pred HHHHHHHHcCC-ceEeecCCCHHHHHHHHHHHHhcCceeEEEEeccChhHHHHHHHHHhCCCCEEEEeCCCCCCHHHHHH
Confidence 45555554432 4567888999888888888776 445555555444445566777888899976664 3456555554
Q ss_pred HHHHhhC-CCceEEE
Q psy437 126 VQMKWIS-NKVHLYN 139 (184)
Q Consensus 126 ~~~~f~~-~~~~v~v 139 (184)
+.+.... ..+.|++
T Consensus 140 I~~ik~~~p~v~Vi~ 154 (366)
T 4fo4_A 140 IRETRAAYPHLEIIG 154 (366)
T ss_dssp HHHHHHHCTTCEEEE
T ss_pred HHHHHHhcCCCceEe
Confidence 4444332 2566655
No 424
>3msz_A Glutaredoxin 1; alpha-beta sandwich, center for structural genomics of infec diseases, csgid, oxidoreductase; HET: GSH; 2.05A {Francisella tularensis subsp} PDB: 3lgc_A*
Probab=35.31 E-value=69 Score=18.85 Aligned_cols=33 Identities=9% Similarity=-0.092 Sum_probs=24.1
Q ss_pred cEEEEe-ccHHHHHHHHHHHHhCCCeeEEecCCC
Q psy437 36 SGIVYC-LTRKECDSVAAALAQERINAISYHAGL 68 (184)
Q Consensus 36 ~~IIf~-~tr~~~e~la~~L~~~gi~~~~~hg~l 68 (184)
+.++|. +++..|..+...|.+.|++.....=+.
T Consensus 5 ~v~ly~~~~Cp~C~~~~~~L~~~~i~~~~~~vd~ 38 (89)
T 3msz_A 5 KVKIYTRNGCPYCVWAKQWFEENNIAFDETIIDD 38 (89)
T ss_dssp CEEEEECTTCHHHHHHHHHHHHTTCCCEEEECCS
T ss_pred EEEEEEcCCChhHHHHHHHHHHcCCCceEEEeec
Confidence 456675 678889999999999987765554333
No 425
>1jye_A Lactose operon repressor; gene regulation, protein stability, protein DNA-binding, transcription; 1.70A {Escherichia coli} SCOP: c.93.1.1 PDB: 1lbi_A 1lbg_A* 1lbh_A 1jyf_A 3edc_A 1efa_A* 1jwl_A* 2pe5_A* 1tlf_A* 2p9h_A* 2paf_A* 1cjg_A* 1l1m_A 1osl_A 2kei_A* 2kej_A* 2kek_A* 2bjc_A 1lqc_A 1lcc_A* ...
Probab=35.12 E-value=1.5e+02 Score=22.71 Aligned_cols=67 Identities=9% Similarity=0.008 Sum_probs=31.7
Q ss_pred HHHHHHHHhCCCeeEEecCCCC-HHHHHHHHHHHhccCceEEEEEeecccHHHHHHHHHhcCCcEEEe
Q psy437 48 DSVAAALAQERINAISYHAGLA-DKLRNEVQMKWISNKVHVGHWTVVSKECDSVAAALAQERINAISY 114 (184)
Q Consensus 48 e~la~~L~~~gi~~~~~hg~l~-~~~R~~~~~~f~~g~~~vlVaT~tr~~~e~~a~gL~~~gi~~~vi 114 (184)
..+.+.+.+.|+.+.....+-+ .+.....++.+....+..||.......-+.+...+...|++++++
T Consensus 81 ~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~l~~l~~~~vdGiIi~~~~~~~~~~~~~~~~~~iPvV~i 148 (349)
T 1jye_A 81 AAILSRADQLGASVVVSMVERSGVEACKTAVHNLLAQRVSGLIINYPLDDQDAIAVEAACTNVPALFL 148 (349)
T ss_dssp HHHHHHHHHTTCEEEEEECCSSSHHHHHHHHHHHHTTTCSCEEEESCCCHHHHHHHHHHTTTSCEEES
T ss_pred HHHHHHHHHcCCEEEEEeCCCCcHHHHHHHHHHHHHCCCCEEEEecCCCChhHHHHHHhhCCCCEEEE
Confidence 3344455566777665544332 233334556666666665555422222122233344456664333
No 426
>4djd_C C/Fe-SP, corrinoid/iron-sulfur protein large subunit; TIM barrel, rossmann fold, B12-dependent methyltransferase; HET: B12; 2.38A {Moorella thermoacetica} PDB: 4dje_C* 4djf_C*
Probab=34.99 E-value=2e+02 Score=23.96 Aligned_cols=113 Identities=13% Similarity=0.089 Sum_probs=73.5
Q ss_pred CCCCeEEEEEEccChHHHHHHHHHhhcCCCcEEEEeccHHHHHHHHHHHHhCCCeeEEecCCC---C----HHH--HHHH
Q psy437 6 NRANLKYEILPKKNVLKEVISLIKAKYSGQSGIVYCLTRKECDSVAAALAQERINAISYHAGL---A----DKL--RNEV 76 (184)
Q Consensus 6 ~R~Nl~y~v~~~~~k~~~L~~~l~~~~~~~~~IIf~~tr~~~e~la~~L~~~gi~~~~~hg~l---~----~~~--R~~~ 76 (184)
++.|+-+++. .+..+.+..+..+ .+.+.++..+....+.++...+.+.|++-.++.-+. . +.. |...
T Consensus 177 ~~~plI~sat--~dn~e~m~~lAa~--y~~pVi~~~~dl~~lkelv~~a~~~GI~~IvLDPG~~g~~~t~~~~~~iRr~A 252 (446)
T 4djd_C 177 DRKPLLYAAT--GANYEAMTALAKE--NNCPLAVYGNGLEELAELVDKIVALGHKQLVLDPGARETSRAIADFTQIRRLA 252 (446)
T ss_dssp GGCCEEEEEC--TTTHHHHHHHHHH--TTCCEEEECSSHHHHHHHHHHHHHTTCCCEEEECCCCSHHHHHHHHHHHHHHH
T ss_pred CcCCeeEecc--hhhHHHHHHHHHH--cCCcEEEEeccHHHHHHHHHHHHHCCCCcEEECCCchhHHHHHHHHHHHHHHh
Confidence 4667888877 3467777777765 567788888888889999999999999755665544 1 112 2222
Q ss_pred H-HHHhccCceEEEEEeeccc--HH-HHHHHHHhcCCcEEEeeCCCChHHH
Q psy437 77 Q-MKWISNKVHVGHWTVVSKE--CD-SVAAALAQERINAISYHAGLADKLR 123 (184)
Q Consensus 77 ~-~~f~~g~~~vlVaT~tr~~--~e-~~a~gL~~~gi~~~vih~~~p~~~r 123 (184)
+ +.++.=..++|.+|+. .+ .| .+|..+-..|-+..++|-=-+.+.-
T Consensus 253 L~~~d~~LgyPvi~~~sr-~d~~~E~t~A~~~i~kga~Iv~vhdv~~~~~~ 302 (446)
T 4djd_C 253 IKKRFRSFGYPIIALTTA-ANPLDEVLQAVNYVTKYASLVVLRTDAKEHLL 302 (446)
T ss_dssp HHSCCGGGCSCBEEECCC-SSHHHHHHHHHHHHHTTCSEEEESCCCHHHHH
T ss_pred hhccCcccCCCEEeccCC-ccHHHHHHHHHHHHHcCCeEEEEcCCcHHHhh
Confidence 3 3556667898988864 22 11 2233445567776777776666554
No 427
>3hut_A Putative branched-chain amino acid ABC transporter; extracellular ligand-binding receptor,transport protein; 1.93A {Rhodospirillum rubrum atcc 11170}
Probab=34.88 E-value=1.5e+02 Score=22.54 Aligned_cols=108 Identities=6% Similarity=-0.048 Sum_probs=0.0
Q ss_pred CCeEEEEEEccChHHHHHHHHHhhcCCCcEEEEe-----ccHHHHHHHHHHHHhCCCeeEEe-cCCCCHHHHHHHHHHHh
Q psy437 8 ANLKYEILPKKNVLKEVISLIKAKYSGQSGIVYC-----LTRKECDSVAAALAQERINAISY-HAGLADKLRNEVQMKWI 81 (184)
Q Consensus 8 ~Nl~y~v~~~~~k~~~L~~~l~~~~~~~~~IIf~-----~tr~~~e~la~~L~~~gi~~~~~-hg~l~~~~R~~~~~~f~ 81 (184)
|+++........-...+.++|.+ .+.+.|.+. ..+...+.+.+.|.+.|+.+... .-.....+-...+++++
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~l~~--~g~~~ia~i~~~~~~~~~~~~~~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~l~ 191 (358)
T 3hut_A 114 PWQFRAITTPAFEGPNNAAWMIG--DGFTSVAVIGVTTDWGLSSAQAFRKAFELRGGAVVVNEEVPPGNRRFDDVIDEIE 191 (358)
T ss_dssp TTEEESSCCGGGHHHHHHHHHHH--TTCCEEEEEEESSHHHHHHHHHHHHHHHHTTCEEEEEEEECTTCCCCHHHHHHHH
T ss_pred CeEEEecCChHHHHHHHHHHHHH--cCCCEEEEEecCcHHHHHHHHHHHHHHHHcCCEEEEEEecCCCCccHHHHHHHHH
Q ss_pred ccCceEEEEEeecccHHHHHHHHHhcCCcEEEeeCC
Q psy437 82 SNKVHVGHWTVVSKECDSVAAALAQERINAISYHAG 117 (184)
Q Consensus 82 ~g~~~vlVaT~tr~~~e~~a~gL~~~gi~~~vih~~ 117 (184)
+....+|++...-.++-.+.+.+...|++.-++-.+
T Consensus 192 ~~~~d~i~~~~~~~~a~~~~~~~~~~g~~~p~~~~~ 227 (358)
T 3hut_A 192 DEAPQAIYLAMAYEDAAPFLRALRARGSALPVYGSS 227 (358)
T ss_dssp HHCCSEEEEESCHHHHHHHHHHHHHTTCCCCEEECG
T ss_pred hcCCCEEEEccCchHHHHHHHHHHHcCCCCcEEecC
No 428
>1nw9_B Caspase 9, apoptosis-related cysteine protease; XIAP, caspase inhibition, caspase activation, dimerization; 2.40A {Homo sapiens} SCOP: c.17.1.1 PDB: 1jxq_A* 2ar9_A
Probab=34.60 E-value=1.1e+02 Score=23.39 Aligned_cols=49 Identities=6% Similarity=0.058 Sum_probs=38.5
Q ss_pred CCcEEEEecc--------------HHHHHHHHHHHHhCCCeeEEecCCCCHHHHHHHHHHHhcc
Q psy437 34 GQSGIVYCLT--------------RKECDSVAAALAQERINAISYHAGLADKLRNEVQMKWISN 83 (184)
Q Consensus 34 ~~~~IIf~~t--------------r~~~e~la~~L~~~gi~~~~~hg~l~~~~R~~~~~~f~~g 83 (184)
.+-+||+++. ..+++.+++.|+..|+.+.. +-+++.++-.+.+++|...
T Consensus 21 rg~aLIInn~~f~~~~~l~~R~Gt~~D~~~L~~~f~~LgF~V~~-~~dlt~~em~~~l~~~~~~ 83 (277)
T 1nw9_B 21 CGHCLIINNVNFCRESGLRTRTGSNIDCEKLRRRFSSLHFMVEV-KGDLTAKKMVLALLELARQ 83 (277)
T ss_dssp CEEEEEEECCCCCGGGTCCCCTTHHHHHHHHHHHHHHTTEEEEE-EESCCHHHHHHHHHHHHHS
T ss_pred ccEEEEEeCcccCCCCCCCCCCCcHHHHHHHHHHHHHCCCEEEE-EcCCCHHHHHHHHHHHHHh
Confidence 3457777664 35899999999999998764 5689998888889988753
No 429
>2xw6_A MGS, methylglyoxal synthase; lyase; 1.08A {Thermus SP} PDB: 2x8w_A 1wo8_A
Probab=33.91 E-value=75 Score=21.74 Aligned_cols=47 Identities=2% Similarity=-0.114 Sum_probs=35.7
Q ss_pred EEEEeecccHHHHHHHHHh-cCCcEEEeeCCCChHHHHHHHHHhhCCCceEEEEE
Q psy437 88 GHWTVVSKECDSVAAALAQ-ERINAISYHAGLADKLRNEVQMKWISNKVHLYNVW 141 (184)
Q Consensus 88 lVaT~tr~~~e~~a~gL~~-~gi~~~vih~~~p~~~r~~~~~~f~~~~~~v~va~ 141 (184)
|+||. -.|+.|.. .|+.+..++ ..|..-+..+-...++|++.+++.+
T Consensus 34 l~AT~------gTa~~L~e~~Gl~v~~v~-k~~~eG~p~I~d~I~~geIdlVInt 81 (134)
T 2xw6_A 34 LVATG------TTGRRIEEATGLTVEKLL-SGPLGGDQQMGARVAEGRILAVIFF 81 (134)
T ss_dssp EEECH------HHHHHHHHHHCCCCEECS-CGGGTHHHHHHHHHHTTCEEEEEEE
T ss_pred EEEcc------HHHHHHHHhhCceEEEEE-ecCCCCcchHHHHHHCCCccEEEEc
Confidence 88999 77889988 999987776 3342345678888899998888864
No 430
>2qh8_A Uncharacterized protein; conserved domain protein, structural genomics, PSI-2, MCSG, BIG_563.1, protein structure initiative; HET: HIS; 2.20A {Vibrio cholerae o1 biovar eltor str} PDB: 3lkv_A*
Probab=33.76 E-value=1.5e+02 Score=22.20 Aligned_cols=29 Identities=7% Similarity=-0.026 Sum_probs=13.6
Q ss_pred ecCCCCHHHHHHHHHHHhccCceEEEEEe
Q psy437 64 YHAGLADKLRNEVQMKWISNKVHVGHWTV 92 (184)
Q Consensus 64 ~hg~l~~~~R~~~~~~f~~g~~~vlVaT~ 92 (184)
+.++-+.+.-...++.+.+.++.+||.++
T Consensus 49 ~~~~~~~~~~~~~~~~l~~~~vDgII~~~ 77 (302)
T 2qh8_A 49 KTAQGNPAIAVQIARQFVGENPDVLVGIA 77 (302)
T ss_dssp EECTTCHHHHHHHHHHHHHTCCSEEEEES
T ss_pred ecCCCCHHHHHHHHHHHHhCCCCEEEECC
Confidence 33333333333445555555555555544
No 431
>3rkr_A Short chain oxidoreductase; rossmann fold; HET: NAP; 2.42A {Uncultured bacterium BIO5}
Probab=33.52 E-value=1.4e+02 Score=21.91 Aligned_cols=69 Identities=9% Similarity=-0.009 Sum_probs=42.9
Q ss_pred HHHHHHHhhcCCCcEEEEeccHHHHHHHHHHHHhCCCeeEEecCCCCHHH-HHHHHHHHhc--cCceEEEEEee
Q psy437 23 EVISLIKAKYSGQSGIVYCLTRKECDSVAAALAQERINAISYHAGLADKL-RNEVQMKWIS--NKVHVGHWTVV 93 (184)
Q Consensus 23 ~L~~~l~~~~~~~~~IIf~~tr~~~e~la~~L~~~gi~~~~~hg~l~~~~-R~~~~~~f~~--g~~~vlVaT~t 93 (184)
.+...|.+ .+...++...+....+.+.+.+...+-.+..+.++++..+ -....+.+.. |.+.+||.+.+
T Consensus 44 ~la~~l~~--~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~id~lv~~Ag 115 (262)
T 3rkr_A 44 AIARKLGS--LGARVVLTARDVEKLRAVEREIVAAGGEAESHACDLSHSDAIAAFATGVLAAHGRCDVLVNNAG 115 (262)
T ss_dssp HHHHHHHH--TTCEEEEEESCHHHHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHHHHHHHSCCSEEEECCC
T ss_pred HHHHHHHH--CCCEEEEEECCHHHHHHHHHHHHHhCCceeEEEecCCCHHHHHHHHHHHHHhcCCCCEEEECCC
Confidence 44444544 3455666677777778888888777777777888877533 2333333322 56777776654
No 432
>3h8q_A Thioredoxin reductase 3; oxidoreductase, structural genomics, structural genomics CON SGC, developmental protein, differentiation; 2.21A {Homo sapiens} SCOP: c.47.1.0
Probab=33.03 E-value=96 Score=19.81 Aligned_cols=54 Identities=6% Similarity=-0.034 Sum_probs=35.7
Q ss_pred eEEEEE-eecccHHHHHHHHHhcCCcEEEeeCCCC---hHHHHHHHHHhhCCCceEEE
Q psy437 86 HVGHWT-VVSKECDSVAAALAQERINAISYHAGLA---DKLRNEVQMKWISNKVHLYN 139 (184)
Q Consensus 86 ~vlVaT-~tr~~~e~~a~gL~~~gi~~~vih~~~p---~~~r~~~~~~f~~~~~~v~v 139 (184)
+|+|+| ++-..|..+...|+..|+....+..+.. ...+.++.+......++.+.
T Consensus 18 ~v~vy~~~~Cp~C~~ak~~L~~~~i~~~~~dvd~~~~~~~~~~~l~~~~g~~tvP~vf 75 (114)
T 3h8q_A 18 RVVIFSKSYCPHSTRVKELFSSLGVECNVLELDQVDDGARVQEVLSEITNQKTVPNIF 75 (114)
T ss_dssp SEEEEECTTCHHHHHHHHHHHHTTCCCEEEETTTSTTHHHHHHHHHHHHSCCSSCEEE
T ss_pred CEEEEEcCCCCcHHHHHHHHHHcCCCcEEEEecCCCChHHHHHHHHHHhCCCccCEEE
Confidence 355555 5567899999999999999778888863 23445554444444555554
No 433
>2hze_A Glutaredoxin-1; thioredoxin fold, arsenic, dimethylarsenite., electron trans oxidoreductase; 1.80A {Ectromelia virus} PDB: 2hzf_A 2hze_B
Probab=33.01 E-value=95 Score=19.73 Aligned_cols=57 Identities=11% Similarity=-0.007 Sum_probs=36.1
Q ss_pred CCCcEEEEe-ccHHHHHHHHHHHHhCCCe---eEEecCCCCH---HHHHHHHHHHhccCceEEE
Q psy437 33 SGQSGIVYC-LTRKECDSVAAALAQERIN---AISYHAGLAD---KLRNEVQMKWISNKVHVGH 89 (184)
Q Consensus 33 ~~~~~IIf~-~tr~~~e~la~~L~~~gi~---~~~~hg~l~~---~~R~~~~~~f~~g~~~vlV 89 (184)
.....++|. +++..|..+...|.+.++. ...+.-+.++ +.+..+.+.+-...++.++
T Consensus 17 ~~~~vv~f~~~~Cp~C~~~~~~L~~~~~~~~~~~~vdi~~~~~~~~~~~~l~~~~g~~~vP~v~ 80 (114)
T 2hze_A 17 ANNKVTIFVKYTCPFCRNALDILNKFSFKRGAYEIVDIKEFKPENELRDYFEQITGGKTVPRIF 80 (114)
T ss_dssp CTTCEEEEECTTCHHHHHHHHHHTTSCBCTTSEEEEEGGGSSSHHHHHHHHHHHHSCCSSCEEE
T ss_pred ccCCEEEEEeCCChhHHHHHHHHHHcCCCcCceEEEEccCCCChHHHHHHHHHHhCCCCcCEEE
Confidence 345666675 6778999999999988887 6665544432 3344455555444566553
No 434
>3mwd_B ATP-citrate synthase; ATP-grAsp, phosphohistidine, organic acid, lyase, transferas; HET: CIT; 2.10A {Homo sapiens} PDB: 3mwe_B*
Probab=32.99 E-value=52 Score=26.23 Aligned_cols=52 Identities=15% Similarity=0.240 Sum_probs=36.1
Q ss_pred EEEEEeecccHHHHHHHHHhcCCcEEE-eeCCCChHHHHHHHHHhhCCCceEE
Q psy437 87 VGHWTVVSKECDSVAAALAQERINAIS-YHAGLADKLRNEVQMKWISNKVHLY 138 (184)
Q Consensus 87 vlVaT~tr~~~e~~a~gL~~~gi~~~v-ih~~~p~~~r~~~~~~f~~~~~~v~ 138 (184)
++|+++.....+.+-+.++..|++..| |-.|+|......+.+.-+...++++
T Consensus 83 aVi~vp~~~a~~ai~ea~~~~Gv~~vViiT~G~~e~~~~~l~~~a~~~g~rli 135 (334)
T 3mwd_B 83 LINFASLRSAYDSTMETMNYAQIRTIAIIAEGIPEALTRKLIKKADQKGVTII 135 (334)
T ss_dssp EEECCCTTTHHHHHHHHTTSTTCCEEEECCSCCCHHHHHHHHHHHHHHTCEEE
T ss_pred EEEecCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHcCCEEE
Confidence 567788776667777788888998544 5899998777666666544444433
No 435
>3v8b_A Putative dehydrogenase, possibly 3-oxoacyl-[acyl- protein] reductase; PSI-biology, structural genomics, protein structure initiati nysgrc; 2.70A {Sinorhizobium meliloti}
Probab=32.74 E-value=1.6e+02 Score=22.14 Aligned_cols=70 Identities=17% Similarity=0.145 Sum_probs=45.3
Q ss_pred HHHHHHHHhhcCCCcEEEEeccHHHHHHHHHHHHhCCCeeEEecCCCCHHH-HHHHHHHHhc--cCceEEEEEee
Q psy437 22 KEVISLIKAKYSGQSGIVYCLTRKECDSVAAALAQERINAISYHAGLADKL-RNEVQMKWIS--NKVHVGHWTVV 93 (184)
Q Consensus 22 ~~L~~~l~~~~~~~~~IIf~~tr~~~e~la~~L~~~gi~~~~~hg~l~~~~-R~~~~~~f~~--g~~~vlVaT~t 93 (184)
..+...|.+ .+...++...+....+.++..+...+-.+..+.++++..+ -....++... |.+.+||..-+
T Consensus 42 ~aia~~la~--~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~iD~lVnnAg 114 (283)
T 3v8b_A 42 RATALALAA--DGVTVGALGRTRTEVEEVADEIVGAGGQAIALEADVSDELQMRNAVRDLVLKFGHLDIVVANAG 114 (283)
T ss_dssp HHHHHHHHH--TTCEEEEEESSHHHHHHHHHHHTTTTCCEEEEECCTTCHHHHHHHHHHHHHHHSCCCEEEECCC
T ss_pred HHHHHHHHH--CCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHhCCCCEEEECCC
Confidence 345555544 4556666777778888888888777777888888887543 2333333322 67888887554
No 436
>4es6_A Uroporphyrinogen-III synthase; heme-biosynthesis, cytoplasmi; 2.22A {Pseudomonas aeruginosa}
Probab=32.43 E-value=56 Score=24.27 Aligned_cols=54 Identities=13% Similarity=0.040 Sum_probs=29.8
Q ss_pred eEEEEEeecccHHHHHHHHHhcCCcE---EEeeCCCChHHHHHHHHHhhCCCceEEEE
Q psy437 86 HVGHWTVVSKECDSVAAALAQERINA---ISYHAGLADKLRNEVQMKWISNKVHLYNV 140 (184)
Q Consensus 86 ~vlVaT~tr~~~e~~a~gL~~~gi~~---~vih~~~p~~~r~~~~~~f~~~~~~v~va 140 (184)
+|++... .+.-+.++..|...|+.+ .+|.-..+......+.+.+..+.+.+++.
T Consensus 135 ~vL~~rg-~~~r~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~l~~~~~d~v~f 191 (254)
T 4es6_A 135 KVLIMRG-EGGREFLAERLRGQGVQVDYLPLYRRRAPDYPAGELLARVRAERLNGLVV 191 (254)
T ss_dssp EEEEEEC-SSCCCHHHHHHHHTTCEEEEEECEEEECCCCCTTHHHHHHHHTTCCEEEC
T ss_pred EEEEEcC-CccHHHHHHHHHHCCCEEEEEeEEEeeCCCCCHHHHHHHHHhCCCCEEEE
Confidence 5555443 334457777888887763 44555544433333444555566665554
No 437
>2yvq_A Carbamoyl-phosphate synthase; conserved hypothetical protein, structural genomics, NPPSFA; 1.98A {Homo sapiens}
Probab=31.89 E-value=29 Score=23.83 Aligned_cols=43 Identities=5% Similarity=-0.097 Sum_probs=29.8
Q ss_pred HHHHHhCCCeeEEecCCCCHHHH----HHHHHHHhccCceEEEEEeec
Q psy437 51 AAALAQERINAISYHAGLADKLR----NEVQMKWISNKVHVGHWTVVS 94 (184)
Q Consensus 51 a~~L~~~gi~~~~~hg~l~~~~R----~~~~~~f~~g~~~vlVaT~tr 94 (184)
+++|++.|+++..+...- ...+ ..+.+.+++|+++.+|.|+..
T Consensus 60 a~~L~~~Gi~v~~v~k~~-egg~~~~~~~i~d~i~~g~i~lVInt~~~ 106 (143)
T 2yvq_A 60 SDWLNANNVPATPVAWPS-QEGQNPSLSSIRKLIRDGSIDLVINLPNN 106 (143)
T ss_dssp HHHHHHTTCCCEEECCGG-GC-----CBCHHHHHHTTSCCEEEECCCC
T ss_pred HHHHHHcCCeEEEEEecc-CCCcccccccHHHHHHCCCceEEEECCCC
Confidence 456677888887765321 1113 468888999999999999865
No 438
>3tem_A Ribosyldihydronicotinamide dehydrogenase [quinone; oxidoreductase-oxidoreductase inhibitor complex; HET: FAD 6A1 IMD; 1.45A {Homo sapiens} SCOP: c.23.5.3 PDB: 3te7_A* 3tzb_A* 3fw1_A* 2qwx_A* 1zx1_A* 3g5m_A* 3gam_A* 3ovm_A* 3owh_A* 3owx_A* 3ox1_A* 3ox2_A* 3ox3_A* 1sg0_A* 1qr2_A* 1xi2_A* 2qmy_A* 2qmz_A* 2qr2_A* 2qx4_A* ...
Probab=31.75 E-value=1.5e+02 Score=21.73 Aligned_cols=19 Identities=11% Similarity=0.052 Sum_probs=16.8
Q ss_pred EeeCCCChHHHHHHHHHhh
Q psy437 113 SYHAGLADKLRNEVQMKWI 131 (184)
Q Consensus 113 vih~~~p~~~r~~~~~~f~ 131 (184)
+|++++|...+.++-+.+.
T Consensus 102 ~y~~~~p~~lK~~iD~~~~ 120 (228)
T 3tem_A 102 LYWFSVPAILKGWMDRVLC 120 (228)
T ss_dssp CBTTBCCHHHHHHHHHHSC
T ss_pred hhhcccCHHHHHHHHHHhh
Confidence 5899999999999999754
No 439
>3tfo_A Putative 3-oxoacyl-(acyl-carrier-protein) reducta; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.08A {Sinorhizobium meliloti}
Probab=31.74 E-value=1.6e+02 Score=21.93 Aligned_cols=70 Identities=7% Similarity=0.072 Sum_probs=47.4
Q ss_pred HHHHHHHHhhcCCCcEEEEeccHHHHHHHHHHHHhCCCeeEEecCCCCHHH-HHHHHHHHhc--cCceEEEEEee
Q psy437 22 KEVISLIKAKYSGQSGIVYCLTRKECDSVAAALAQERINAISYHAGLADKL-RNEVQMKWIS--NKVHVGHWTVV 93 (184)
Q Consensus 22 ~~L~~~l~~~~~~~~~IIf~~tr~~~e~la~~L~~~gi~~~~~hg~l~~~~-R~~~~~~f~~--g~~~vlVaT~t 93 (184)
..+...|.+ .+...++...+....+.+++.|...+-.+..+.++++..+ -....+.... |.+.+||.+-+
T Consensus 18 ~aia~~la~--~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~iD~lVnnAG 90 (264)
T 3tfo_A 18 EGIARELGV--AGAKILLGARRQARIEAIATEIRDAGGTALAQVLDVTDRHSVAAFAQAAVDTWGRIDVLVNNAG 90 (264)
T ss_dssp HHHHHHHHH--TTCEEEEEESSHHHHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHHHHHHHSCCCEEEECCC
T ss_pred HHHHHHHHH--CCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHcCCCCEEEECCC
Confidence 345555544 4556677778888888999999888888888888887543 3333333332 67888887653
No 440
>3qiv_A Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR protein] reductase; structural genomics; 2.25A {Mycobacterium avium subsp}
Probab=31.59 E-value=1.5e+02 Score=21.52 Aligned_cols=70 Identities=11% Similarity=0.121 Sum_probs=47.7
Q ss_pred HHHHHHHHhhcCCCcEEEEeccHHHHHHHHHHHHhCCCeeEEecCCCCHHH-HHHHHHHHhc--cCceEEEEEee
Q psy437 22 KEVISLIKAKYSGQSGIVYCLTRKECDSVAAALAQERINAISYHAGLADKL-RNEVQMKWIS--NKVHVGHWTVV 93 (184)
Q Consensus 22 ~~L~~~l~~~~~~~~~IIf~~tr~~~e~la~~L~~~gi~~~~~hg~l~~~~-R~~~~~~f~~--g~~~vlVaT~t 93 (184)
..+...|.+ .+...++...+.+..+.+.+.+...+-.+..+.++++..+ -....++..+ |.+.+||..-+
T Consensus 23 ~~~a~~l~~--~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~id~li~~Ag 95 (253)
T 3qiv_A 23 QAYAEALAR--EGAAVVVADINAEAAEAVAKQIVADGGTAISVAVDVSDPESAKAMADRTLAEFGGIDYLVNNAA 95 (253)
T ss_dssp HHHHHHHHH--TTCEEEEEESCHHHHHHHHHHHHHTTCEEEEEECCTTSHHHHHHHHHHHHHHHSCCCEEEECCC
T ss_pred HHHHHHHHH--CCCEEEEEcCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHcCCCCEEEECCC
Confidence 345555544 4556777788888888999999888888888888887543 3333333332 57888887654
No 441
>2xij_A Methylmalonyl-COA mutase, mitochondrial; isomerase, organic aciduria, vitamin B12; HET: B12 5AD BTB; 1.95A {Homo sapiens} PDB: 2xiq_A* 3bic_A
Probab=31.57 E-value=2.8e+02 Score=24.76 Aligned_cols=81 Identities=10% Similarity=0.005 Sum_probs=53.9
Q ss_pred HHHHHHHHHHhCCCeeEEecCCCCHHHHHHHHHHHhccCceEEEEEeec----ccHHHHHHHHHhcCC-cEEEeeCC-CC
Q psy437 46 ECDSVAAALAQERINAISYHAGLADKLRNEVQMKWISNKVHVGHWTVVS----KECDSVAAALAQERI-NAISYHAG-LA 119 (184)
Q Consensus 46 ~~e~la~~L~~~gi~~~~~hg~l~~~~R~~~~~~f~~g~~~vlVaT~tr----~~~e~~a~gL~~~gi-~~~vih~~-~p 119 (184)
....++..|...|+.+...-...+. +++.+..+..+..+|+.+..- ..+..+...|...|+ ++.++=|| .|
T Consensus 620 G~~iVa~~l~~~GfeVi~lG~~v~~---eeiv~aA~e~~adiVglSsl~~~~~~~~~~vi~~Lr~~G~~dv~VivGG~~P 696 (762)
T 2xij_A 620 GAKVIATGFADLGFDVDIGPLFQTP---REVAQQAVDADVHAVGVSTLAAGHKTLVPELIKELNSLGRPDILVMCGGVIP 696 (762)
T ss_dssp HHHHHHHHHHHTTCEEEECCTTCCH---HHHHHHHHHTTCSEEEEEECSSCHHHHHHHHHHHHHHTTCTTSEEEEEESCC
T ss_pred HHHHHHHHHHhCCeEEeeCCCCCCH---HHHHHHHHHcCCCEEEEeeecHHHHHHHHHHHHHHHhcCCCCCEEEEeCCCC
Confidence 3567788888899998543222333 457788888788877666544 356778888888887 45666666 77
Q ss_pred hHHHHHHHHH
Q psy437 120 DKLRNEVQMK 129 (184)
Q Consensus 120 ~~~r~~~~~~ 129 (184)
........+.
T Consensus 697 ~~d~~~l~~~ 706 (762)
T 2xij_A 697 PQDYEFLFEV 706 (762)
T ss_dssp GGGHHHHHHH
T ss_pred cccHHHHHhC
Confidence 7655544444
No 442
>1b93_A Protein (methylglyoxal synthase); glycolytic bypass, lyase; 1.90A {Escherichia coli} SCOP: c.24.1.2 PDB: 1egh_A 1ik4_A* 1s8a_A 1s89_A
Probab=31.51 E-value=72 Score=22.35 Aligned_cols=47 Identities=9% Similarity=-0.052 Sum_probs=33.1
Q ss_pred EEEEeecccHHHHHHHHHh-cCCcEEEeeCCCChHHHHHHHHHhhCCCceEEEEE
Q psy437 88 GHWTVVSKECDSVAAALAQ-ERINAISYHAGLADKLRNEVQMKWISNKVHLYNVW 141 (184)
Q Consensus 88 lVaT~tr~~~e~~a~gL~~-~gi~~~vih~~~p~~~r~~~~~~f~~~~~~v~va~ 141 (184)
|+||. -.|+.|.. .|+.+..++ ..|..-+..+....++|++.+++.+
T Consensus 42 l~AT~------gTa~~L~e~~Gl~v~~v~-k~~eGG~p~I~d~I~~geIdlVInt 89 (152)
T 1b93_A 42 LYATG------TTGNLISRATGMNVNAML-SGPMGGDQQVGALISEGKIDVLIFF 89 (152)
T ss_dssp EEEET------THHHHHHHHHCCCCEEEC-CGGGTHHHHHHHHHHTTCCCEEEEE
T ss_pred EEEcc------HHHHHHHHHhCceeEEEE-ecCCCCCchHHHHHHCCCccEEEEc
Confidence 77888 56778877 888877775 3343235567777888888777754
No 443
>3tla_A MCCF; serine protease, hydrolase; 1.20A {Escherichia coli} PDB: 3tle_A* 3tlg_A 3tlb_A* 3tlc_A* 3tlz_A* 3tly_A
Probab=31.39 E-value=1.5e+02 Score=23.81 Aligned_cols=48 Identities=13% Similarity=-0.006 Sum_probs=31.2
Q ss_pred HHHHHHHHHHhCCCeeEEe---------cCCCCHHHHHH-HHHHHhccCceEEEEEeec
Q psy437 46 ECDSVAAALAQERINAISY---------HAGLADKLRNE-VQMKWISNKVHVGHWTVVS 94 (184)
Q Consensus 46 ~~e~la~~L~~~gi~~~~~---------hg~l~~~~R~~-~~~~f~~g~~~vlVaT~tr 94 (184)
..+...+.|++.|+++... -++ +.++|.+ +.+.|..-++++|+|+..=
T Consensus 62 ~~~~~~~~L~~~G~~v~~~~~~~~~~~~~ag-td~~Ra~dL~~af~Dp~i~aI~~~rGG 119 (371)
T 3tla_A 62 RFFRGVEFLQRKGFKLVSGKLTGKTDFYRSG-TIKERAQEFNELVYNPDITCIMSTIGG 119 (371)
T ss_dssp HHHHHHHHHHHTTCEEEECTTTTCCBTTBSS-CHHHHHHHHHHHHTCTTEEEEEESCCC
T ss_pred HHHHHHHHHHhCCCEEEECCchhcccCccCC-CHHHHHHHHHHHhhCCCCCEEEEcccc
Confidence 4455567888889987542 233 3456665 4555666788998887654
No 444
>1vlj_A NADH-dependent butanol dehydrogenase; TM0820, structural G JCSG, protein structure initiative, PSI, joint center for S genomics; HET: NAP; 1.78A {Thermotoga maritima} SCOP: e.22.1.2
Probab=31.24 E-value=2.1e+02 Score=23.06 Aligned_cols=74 Identities=14% Similarity=-0.047 Sum_probs=50.1
Q ss_pred ChHHHHHHHHHhhcCCCcEEEEec--cHH---HHHHHHHHHHhCCCeeEEecCCC---CHHHHHHHHHHHhccCceEEEE
Q psy437 19 NVLKEVISLIKAKYSGQSGIVYCL--TRK---ECDSVAAALAQERINAISYHAGL---ADKLRNEVQMKWISNKVHVGHW 90 (184)
Q Consensus 19 ~k~~~L~~~l~~~~~~~~~IIf~~--tr~---~~e~la~~L~~~gi~~~~~hg~l---~~~~R~~~~~~f~~g~~~vlVa 90 (184)
+.+..|-+.+++. ...+.+|.+. +.. ..+.+...|.+.|+.+..|.+.. +.+.-.+..+.++.....+||+
T Consensus 29 g~l~~l~~~l~~~-g~~r~liVtd~~~~~~~g~~~~v~~~L~~~g~~~~~f~~v~~~p~~~~v~~~~~~~~~~~~D~IIa 107 (407)
T 1vlj_A 29 GTIPKIGEEIKNA-GIRKVLFLYGGGSIKKNGVYDQVVDSLKKHGIEWVEVSGVKPNPVLSKVHEAVEVAKKEKVEAVLG 107 (407)
T ss_dssp TCGGGHHHHHHHT-TCCEEEEEECSSHHHHSSHHHHHHHHHHHTTCEEEEECCCCSSCBHHHHHHHHHHHHHTTCSEEEE
T ss_pred CHHHHHHHHHHHc-CCCeEEEEECchHHhhccHHHHHHHHHHHcCCeEEEecCccCCCCHHHHHHHHHHHHhcCCCEEEE
Confidence 4456666677552 3256666664 222 37888888988899887776633 3356667777788888899998
Q ss_pred Eee
Q psy437 91 TVV 93 (184)
Q Consensus 91 T~t 93 (184)
.-.
T Consensus 108 vGG 110 (407)
T 1vlj_A 108 VGG 110 (407)
T ss_dssp EES
T ss_pred eCC
Confidence 853
No 445
>3sju_A Keto reductase; short-chain dehydrogenase, oxidoreductase; HET: NDP; 2.40A {Streptomyces griseoruber}
Probab=30.80 E-value=1.7e+02 Score=21.86 Aligned_cols=70 Identities=7% Similarity=-0.040 Sum_probs=44.1
Q ss_pred HHHHHHHHhhcCCCcEEEEeccHHHHHHHHHHHHhCCCeeEEecCCCCHHH-HHHHHHHHhc--cCceEEEEEee
Q psy437 22 KEVISLIKAKYSGQSGIVYCLTRKECDSVAAALAQERINAISYHAGLADKL-RNEVQMKWIS--NKVHVGHWTVV 93 (184)
Q Consensus 22 ~~L~~~l~~~~~~~~~IIf~~tr~~~e~la~~L~~~gi~~~~~hg~l~~~~-R~~~~~~f~~--g~~~vlVaT~t 93 (184)
..+...|.+ .+...++...+.+..+.+.+.|...+..+..+.++++..+ -....+.... |.+.+||.+-+
T Consensus 38 ~aia~~la~--~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~id~lv~nAg 110 (279)
T 3sju_A 38 LAVARTLAA--RGIAVYGCARDAKNVSAAVDGLRAAGHDVDGSSCDVTSTDEVHAAVAAAVERFGPIGILVNSAG 110 (279)
T ss_dssp HHHHHHHHH--TTCEEEEEESCHHHHHHHHHHHHTTTCCEEEEECCTTCHHHHHHHHHHHHHHHCSCCEEEECCC
T ss_pred HHHHHHHHH--CCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHHcCCCcEEEECCC
Confidence 344455544 3455666677777788888888877777888888887543 2233333322 57788876654
No 446
>3lyl_A 3-oxoacyl-(acyl-carrier-protein) reductase; alpha and beta protein, NAD(P)-binding rossmann fold, csgid, oxidoreductase; 1.95A {Francisella tularensis subsp} SCOP: c.2.1.2
Probab=30.76 E-value=1.5e+02 Score=21.37 Aligned_cols=70 Identities=7% Similarity=0.032 Sum_probs=47.5
Q ss_pred HHHHHHHHhhcCCCcEEEEeccHHHHHHHHHHHHhCCCeeEEecCCCCHHH-HHHHHHHHhc--cCceEEEEEee
Q psy437 22 KEVISLIKAKYSGQSGIVYCLTRKECDSVAAALAQERINAISYHAGLADKL-RNEVQMKWIS--NKVHVGHWTVV 93 (184)
Q Consensus 22 ~~L~~~l~~~~~~~~~IIf~~tr~~~e~la~~L~~~gi~~~~~hg~l~~~~-R~~~~~~f~~--g~~~vlVaT~t 93 (184)
..+...|.+ .+...++...+....+.+...+...+.++..+.++++..+ -....+...+ |.+.++|.+-+
T Consensus 19 ~~~a~~l~~--~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~li~~Ag 91 (247)
T 3lyl_A 19 FEVAHALAS--KGATVVGTATSQASAEKFENSMKEKGFKARGLVLNISDIESIQNFFAEIKAENLAIDILVNNAG 91 (247)
T ss_dssp HHHHHHHHH--TTCEEEEEESSHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHTTCCCSEEEECCC
T ss_pred HHHHHHHHH--CCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHHHcCCCCEEEECCC
Confidence 345555544 4556677778888888888999888888888888887543 3344444432 56788887654
No 447
>2wul_A Glutaredoxin related protein 5; chromosome 14 open reading frame 87, oxidoreductase, thiored family, GLRX5, FLB4739; HET: GSH; 2.40A {Homo sapiens}
Probab=30.67 E-value=1.2e+02 Score=20.10 Aligned_cols=53 Identities=15% Similarity=0.191 Sum_probs=34.1
Q ss_pred HHHHHHHHhhcCCCcEEEEec------cHHHHHHHHHHHHhCCCe-eEEecCCCCHHHHHHHHH
Q psy437 22 KEVISLIKAKYSGQSGIVYCL------TRKECDSVAAALAQERIN-AISYHAGLADKLRNEVQM 78 (184)
Q Consensus 22 ~~L~~~l~~~~~~~~~IIf~~------tr~~~e~la~~L~~~gi~-~~~~hg~l~~~~R~~~~~ 78 (184)
+.+.+++++ .+.+||.. .+.-|....+.|...|+. ...+.-..+++.|..+.+
T Consensus 11 e~i~~~i~~----~~VvvF~Kgt~~~P~C~fc~~ak~lL~~~gv~~~~~~~v~~~~~~r~~l~~ 70 (118)
T 2wul_A 11 EQLDALVKK----DKVVVFLKGTPEQPQCGFSNAVVQILRLHGVRDYAAYNVLDDPELRQGIKD 70 (118)
T ss_dssp HHHHHHHHH----SSEEEEESBCSSSBSSHHHHHHHHHHHHTTCCSCEEEETTSCHHHHHHHHH
T ss_pred HHHHHHHhc----CCEEEEEcCCCCCCCCHHHHHHHHHHHHhCCcCeEeecccCCHHHHHHHHH
Confidence 456666655 68999964 367788888899888873 444443444554544433
No 448
>1p9l_A Dihydrodipicolinate reductase; oxidoreductase, lysine biosynthesis, NADH binding specificity, TB structural genomics consortium; HET: NAD PDC PG4; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.3 d.81.1.3 PDB: 1c3v_A* 1yl5_A 1yl7_A* 1yl6_A*
Probab=30.55 E-value=1.1e+02 Score=23.06 Aligned_cols=79 Identities=11% Similarity=0.092 Sum_probs=43.8
Q ss_pred cEEE-EeccHHHHHHHHHHHHhCCCeeEEecCCCCHHHHHHHHHHHhcc-CceEEEEEeec-------ccHHHHHHHHHh
Q psy437 36 SGIV-YCLTRKECDSVAAALAQERINAISYHAGLADKLRNEVQMKWISN-KVHVGHWTVVS-------KECDSVAAALAQ 106 (184)
Q Consensus 36 ~~II-f~~tr~~~e~la~~L~~~gi~~~~~hg~l~~~~R~~~~~~f~~g-~~~vlVaT~tr-------~~~e~~a~gL~~ 106 (184)
-.+| |+ +............+.|+++..-.-|++.++...+.+.-... ..+++++.+.- +-++.+|+.|
T Consensus 47 DvvIDfT-~p~a~~~~~~~a~~~g~~~VigTTG~~~e~~~~l~~aa~~~~~~~vv~a~N~siGv~ll~~l~~~aa~~~-- 123 (245)
T 1p9l_A 47 EVVIDFT-HPDVVMGNLEFLIDNGIHAVVGTTGFTAERFQQVESWLVAKPNTSVLIAPNFAIGAVLSMHFAKQAARFF-- 123 (245)
T ss_dssp CEEEECS-CTTTHHHHHHHHHHTTCEEEECCCCCCHHHHHHHHHHHHTSTTCEEEECSCCCHHHHHHHHHHHHHGGGC--
T ss_pred cEEEEcc-ChHHHHHHHHHHHHcCCCEEEcCCCCCHHHHHHHHHHHHhCCCCCEEEECCccHHHHHHHHHHHHHHhhc--
Confidence 4556 55 44445555556566788877766678876665555544434 56666655522 3345555555
Q ss_pred cCCcEEEeeCC
Q psy437 107 ERINAISYHAG 117 (184)
Q Consensus 107 ~gi~~~vih~~ 117 (184)
+++...=.|..
T Consensus 124 ~dieIiE~HH~ 134 (245)
T 1p9l_A 124 DSAEVIELHHP 134 (245)
T ss_dssp SEEEEEEEECT
T ss_pred CCEEEEECccc
Confidence 24443335544
No 449
>4e5s_A MCCFLIKE protein (BA_5613); structural genomics, center for structural genomi infectious diseases, csgid, serine peptidase S66; 1.95A {Bacillus anthracis}
Probab=30.35 E-value=1.8e+02 Score=22.89 Aligned_cols=49 Identities=8% Similarity=-0.037 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHhCCCeeEEe---------cCCCCHHHHHH-HHHHHhccCceEEEEEeec
Q psy437 45 KECDSVAAALAQERINAISY---------HAGLADKLRNE-VQMKWISNKVHVGHWTVVS 94 (184)
Q Consensus 45 ~~~e~la~~L~~~gi~~~~~---------hg~l~~~~R~~-~~~~f~~g~~~vlVaT~tr 94 (184)
...+...+.|++.|+++... -++ +.++|.+ +++.|...++++|+|+..=
T Consensus 30 ~~~~~~~~~L~~~G~~v~~~~~~~~~~~~~ag-~d~~Ra~dL~~a~~Dp~i~aI~~~rGG 88 (331)
T 4e5s_A 30 ENRRLAVKRLTELGFHVTFSTHAEEIDRFASS-SISSRVQDLHEAFRDPNVKAILTTLGG 88 (331)
T ss_dssp HHHHHHHHHHHHTTCEEEECTTTTCCCTTSSC-CHHHHHHHHHHHHHCTTEEEEEESCCC
T ss_pred HHHHHHHHHHHhCCCEEEECCchhcccCccCC-CHHHHHHHHHHHhhCCCCCEEEEcccc
Confidence 44556677788888877642 122 3455655 4555666788888887654
No 450
>1okg_A Possible 3-mercaptopyruvate sulfurtransferase; rhodanese, prolyl isomerase, catalytic triad, serine protease, leishmania pyruvate; HET: CSR; 2.10A {Leishmania major} SCOP: c.46.1.2 c.46.1.2 d.26.1.3
Probab=30.16 E-value=34 Score=27.55 Aligned_cols=37 Identities=11% Similarity=-0.032 Sum_probs=27.0
Q ss_pred CCCcEEEEe-ccH-HHHHHHHHHHHhCCCeeEEecCCCC
Q psy437 33 SGQSGIVYC-LTR-KECDSVAAALAQERINAISYHAGLA 69 (184)
Q Consensus 33 ~~~~~IIf~-~tr-~~~e~la~~L~~~gi~~~~~hg~l~ 69 (184)
+..+.|||| .+- ..+...+..|+..|+++..+.||+.
T Consensus 94 ~d~~VVvYc~~~G~rsa~ra~~~L~~~G~~V~~L~GG~~ 132 (373)
T 1okg_A 94 GELPVLCYDDECGAMGGCRLWWMLNSLGADAYVINGGFQ 132 (373)
T ss_dssp SSSCEEEECSSTTTTTHHHHHHHHHHHTCCEEEETTTTH
T ss_pred CCCeEEEEeCCCCchHHHHHHHHHHHcCCeEEEeCCCHH
Confidence 456788899 443 2334778888888998888899974
No 451
>1rhs_A Sulfur-substituted rhodanese; transferase, sulfurtransferase; 1.36A {Bos taurus} SCOP: c.46.1.2 c.46.1.2 PDB: 1boh_A 1boi_A 1orb_A 2ora_A 1dp2_A* 1rhd_A
Probab=29.86 E-value=24 Score=27.11 Aligned_cols=37 Identities=11% Similarity=-0.035 Sum_probs=27.5
Q ss_pred CCCcEEEEecc--HH-HHHHHHHHHHhCCCe-eEEecCCCC
Q psy437 33 SGQSGIVYCLT--RK-ECDSVAAALAQERIN-AISYHAGLA 69 (184)
Q Consensus 33 ~~~~~IIf~~t--r~-~~e~la~~L~~~gi~-~~~~hg~l~ 69 (184)
+..+.||||.+ -. .+...+..|...|+. +..+.||+.
T Consensus 91 ~~~~vVvyc~~~~g~~~a~~a~~~L~~~G~~~V~~L~GG~~ 131 (296)
T 1rhs_A 91 NDTHVVVYDGDDLGSFYAPRVWWMFRVFGHRTVSVLNGGFR 131 (296)
T ss_dssp TTCEEEEECCCSSSCSSHHHHHHHHHHTTCCCEEEETTHHH
T ss_pred CCCeEEEEcCCCCCcchHHHHHHHHHHcCCCcEEEcCCCHH
Confidence 34568889987 32 366788889999984 778888854
No 452
>1f1j_A Caspase-7 protease; caspase-7, cysteine protease, hydrolase, apoptosis, hydrolas hydrolase inhibitor complex; 2.35A {Homo sapiens} SCOP: c.17.1.1 PDB: 1kmc_A 3r5k_A 1i4o_A 1gqf_A 3h1p_A 1shj_A* 1k86_A 1k88_A 1shl_A*
Probab=29.83 E-value=87 Score=24.51 Aligned_cols=47 Identities=11% Similarity=0.050 Sum_probs=37.5
Q ss_pred cEEEEec--------------cHHHHHHHHHHHHhCCCeeEEecCCCCHHHHHHHHHHHhcc
Q psy437 36 SGIVYCL--------------TRKECDSVAAALAQERINAISYHAGLADKLRNEVQMKWISN 83 (184)
Q Consensus 36 ~~IIf~~--------------tr~~~e~la~~L~~~gi~~~~~hg~l~~~~R~~~~~~f~~g 83 (184)
-+||+.+ +..+++.+++.|+..|+.+.. +-+++.++-...+++|...
T Consensus 71 ~aLIInN~~f~~~~~L~~R~G~~~Da~~L~~~f~~LGF~V~~-~~dlt~~em~~~l~~~~~~ 131 (305)
T 1f1j_A 71 KCIIINNKNFDKVTGMGVRNGTDKDAEALFKCFRSLGFDVIV-YNDCSCAKMQDLLKKASEE 131 (305)
T ss_dssp EEEEEECCCCCTTTTCCCCTTHHHHHHHHHHHHHHHTEEEEE-EESCCHHHHHHHHHHHHHS
T ss_pred EEEEEechhcCCCccCccCCCcHHHHHHHHHHHHHCCCEEEE-ecCcCHHHHHHHHHHHHHh
Confidence 4788775 447899999999999998764 4578888888888888653
No 453
>3nav_A Tryptophan synthase alpha chain; alpha subunit, structural genomics, CSG center for structural genomics of infectious diseases; 2.10A {Vibrio cholerae o1 biovar el tor} SCOP: c.1.2.4
Probab=29.68 E-value=1.9e+02 Score=22.13 Aligned_cols=115 Identities=10% Similarity=0.103 Sum_probs=74.9
Q ss_pred ChHHHHHHHHHhhcCCCcEEE-Ee----ccHHHHHHHHHHHHhCCCeeEE----------------------ecCCCCHH
Q psy437 19 NVLKEVISLIKAKYSGQSGIV-YC----LTRKECDSVAAALAQERINAIS----------------------YHAGLADK 71 (184)
Q Consensus 19 ~k~~~L~~~l~~~~~~~~~II-f~----~tr~~~e~la~~L~~~gi~~~~----------------------~hg~l~~~ 71 (184)
+++......+++ .+.+++| |. |+.+.+..+...|.+.|..+.- +.+|++-.
T Consensus 5 ~ri~~~f~~~~~--~~~~ali~yi~aGdP~~~~~~~~~~~l~~~GaD~iElGiPfSDP~aDGpvIq~a~~rAL~~G~~~~ 82 (271)
T 3nav_A 5 NRYQALFQRLSA--AQQGAFVPFVTIGDPNPEQSLAIMQTLIDAGADALELGMPFSDPLADGPTIQGANLRALAAKTTPD 82 (271)
T ss_dssp CHHHHHHHHHHH--TTBCEEEEEEETTSSCHHHHHHHHHHHHHTTCSSEEEECCCCCGGGCCSHHHHHHHHHHHTTCCHH
T ss_pred HHHHHHHHHHHh--cCCCeEEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEECCCCCCCCCCCHHHHHHHHHHHHcCCCHH
Confidence 355666666654 4455555 64 6788899999999887643221 22344444
Q ss_pred HHHHHHHHHhcc--CceEEEEE--ee--cccHHHHHHHHHhcCCcEEEeeCCCChHHHHHHHHHhhCCCce
Q psy437 72 LRNEVQMKWISN--KVHVGHWT--VV--SKECDSVAAALAQERINAISYHAGLADKLRNEVQMKWISNKVH 136 (184)
Q Consensus 72 ~R~~~~~~f~~g--~~~vlVaT--~t--r~~~e~~a~gL~~~gi~~~vih~~~p~~~r~~~~~~f~~~~~~ 136 (184)
.-...+++++.. ++++++-| +. .-..+..++.+...|++ .++=.|+|......+.+..+.-.+.
T Consensus 83 ~~~~~v~~~r~~~~~~Pivlm~Y~n~v~~~g~~~f~~~~~~aGvd-GvIipDlp~ee~~~~~~~~~~~gl~ 152 (271)
T 3nav_A 83 ICFELIAQIRARNPETPIGLLMYANLVYARGIDDFYQRCQKAGVD-SVLIADVPTNESQPFVAAAEKFGIQ 152 (271)
T ss_dssp HHHHHHHHHHHHCTTSCEEEEECHHHHHHTCHHHHHHHHHHHTCC-EEEETTSCGGGCHHHHHHHHHTTCE
T ss_pred HHHHHHHHHHhcCCCCCEEEEecCcHHHHHhHHHHHHHHHHCCCC-EEEECCCCHHHHHHHHHHHHHcCCe
Confidence 445677777753 67887654 42 23567788888899999 7777899997766666666655444
No 454
>3olh_A MST, 3-mercaptopyruvate sulfurtransferase; structural genomics, structural genomics consortium, SGC, RH fold; 2.50A {Homo sapiens}
Probab=29.14 E-value=51 Score=25.44 Aligned_cols=47 Identities=9% Similarity=-0.027 Sum_probs=31.2
Q ss_pred HHHHHHHhh--cCCCcEEEEeccH---HHHHHHHHHHHhCCCe-eEEecCCCC
Q psy437 23 EVISLIKAK--YSGQSGIVYCLTR---KECDSVAAALAQERIN-AISYHAGLA 69 (184)
Q Consensus 23 ~L~~~l~~~--~~~~~~IIf~~tr---~~~e~la~~L~~~gi~-~~~~hg~l~ 69 (184)
.+...+.+. .+..+.||||.+- ..+..++..|+..|+. +..+.||+.
T Consensus 94 ~~~~~~~~lgi~~~~~VVvyc~~~~g~~~a~ra~~~L~~~G~~~V~~L~GG~~ 146 (302)
T 3olh_A 94 HFAEYAGRLGVGAATHVVIYDASDQGLYSAPRVWWMFRAFGHHAVSLLDGGLR 146 (302)
T ss_dssp HHHHHHHHTTCCSSCEEEEECCCTTSCSSHHHHHHHHHHTTCCCEEEETTHHH
T ss_pred HHHHHHHHcCCCCCCEEEEEeCCCCCcchHHHHHHHHHHcCCCcEEECCCCHH
Confidence 344444332 2455788899642 2467888899999986 777888853
No 455
>3ftp_A 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid, 3-ketoacyl-(acyl-carrier- protein) reductase, oxidoreductase, structural genomics; 2.05A {Burkholderia pseudomallei}
Probab=29.12 E-value=1.8e+02 Score=21.65 Aligned_cols=70 Identities=11% Similarity=0.059 Sum_probs=43.9
Q ss_pred HHHHHHHHhhcCCCcEEEEeccHHHHHHHHHHHHhCCCeeEEecCCCCHHH-HHHHHHHHhc--cCceEEEEEee
Q psy437 22 KEVISLIKAKYSGQSGIVYCLTRKECDSVAAALAQERINAISYHAGLADKL-RNEVQMKWIS--NKVHVGHWTVV 93 (184)
Q Consensus 22 ~~L~~~l~~~~~~~~~IIf~~tr~~~e~la~~L~~~gi~~~~~hg~l~~~~-R~~~~~~f~~--g~~~vlVaT~t 93 (184)
..+...|.+ .+...++...+....+.+...+...+..+..+..+++..+ -....++... |.+.+||..-.
T Consensus 42 ~aia~~la~--~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~iD~lvnnAg 114 (270)
T 3ftp_A 42 RAIALELAR--RGAMVIGTATTEAGAEGIGAAFKQAGLEGRGAVLNVNDATAVDALVESTLKEFGALNVLVNNAG 114 (270)
T ss_dssp HHHHHHHHH--TTCEEEEEESSHHHHHHHHHHHHHHTCCCEEEECCTTCHHHHHHHHHHHHHHHSCCCEEEECCC
T ss_pred HHHHHHHHH--CCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEEeCCCHHHHHHHHHHHHHHcCCCCEEEECCC
Confidence 344555544 4556667777777788888888777777777777776533 2333333322 57788876653
No 456
>4ibo_A Gluconate dehydrogenase; enzyme function initiative structural genomics, oxidoreductase; 2.10A {Agrobacterium fabrum}
Probab=29.03 E-value=1.8e+02 Score=21.65 Aligned_cols=70 Identities=6% Similarity=-0.051 Sum_probs=43.3
Q ss_pred HHHHHHHHhhcCCCcEEEEeccHHHHHHHHHHHHhCCCeeEEecCCCCHHH-HHHHHHHHhc--cCceEEEEEee
Q psy437 22 KEVISLIKAKYSGQSGIVYCLTRKECDSVAAALAQERINAISYHAGLADKL-RNEVQMKWIS--NKVHVGHWTVV 93 (184)
Q Consensus 22 ~~L~~~l~~~~~~~~~IIf~~tr~~~e~la~~L~~~gi~~~~~hg~l~~~~-R~~~~~~f~~--g~~~vlVaT~t 93 (184)
..+...|.+ .+...++...+....+.+.+.+...+-.+..+.++++..+ -....++... |.+.+||..-+
T Consensus 40 ~aia~~la~--~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~iD~lv~nAg 112 (271)
T 4ibo_A 40 RAMAEGLAV--AGARILINGTDPSRVAQTVQEFRNVGHDAEAVAFDVTSESEIIEAFARLDEQGIDVDILVNNAG 112 (271)
T ss_dssp HHHHHHHHH--TTCEEEECCSCHHHHHHHHHHHHHTTCCEEECCCCTTCHHHHHHHHHHHHHHTCCCCEEEECCC
T ss_pred HHHHHHHHH--CCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHHCCCCCEEEECCC
Confidence 344555544 3455556667777778888888777777778888877543 2333333332 56778876544
No 457
>2ht9_A Glutaredoxin-2; thioredoxin fold, iron-sulfur cluster, 2Fe2S, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: GSH; 1.90A {Homo sapiens} PDB: 2fls_A*
Probab=29.01 E-value=1.4e+02 Score=20.29 Aligned_cols=65 Identities=8% Similarity=0.098 Sum_probs=39.5
Q ss_pred HHHHHHHHHhhcCCCcEEEEe-ccHHHHHHHHHHHHhCCCeeEEecCCCC---HHHHHHHHHHHhccCceEEE
Q psy437 21 LKEVISLIKAKYSGQSGIVYC-LTRKECDSVAAALAQERINAISYHAGLA---DKLRNEVQMKWISNKVHVGH 89 (184)
Q Consensus 21 ~~~L~~~l~~~~~~~~~IIf~-~tr~~~e~la~~L~~~gi~~~~~hg~l~---~~~R~~~~~~f~~g~~~vlV 89 (184)
...+.+.+.. .+.+||+ +.+..|..+...|.+.++....+.-+.. ++.+..+.+.+-...++.|+
T Consensus 39 ~~~~~~~i~~----~~Vvvf~~~~Cp~C~~~k~~L~~~~i~~~~vdId~~~~~~~~~~~L~~~~g~~tvP~if 107 (146)
T 2ht9_A 39 VNQIQETISD----NCVVIFSKTSCSYCTMAKKLFHDMNVNYKVVELDLLEYGNQFQDALYKMTGERTVPRIF 107 (146)
T ss_dssp HHHHHHHHHH----CSEEEEECTTCHHHHHHHHHHHHHTCCCEEEEGGGCTTHHHHHHHHHHHHSCCCSCEEE
T ss_pred HHHHHHHhcC----CCEEEEECCCChhHHHHHHHHHHcCCCeEEEECccCcCCHHHHHHHHHHhCCCCcCeEE
Confidence 4555555543 3566775 6778899999999988887655544433 23333444455445566553
No 458
>3h7a_A Short chain dehydrogenase; oxidoreductase, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.87A {Rhodopseudomonas palustris}
Probab=28.91 E-value=1.7e+02 Score=21.40 Aligned_cols=70 Identities=9% Similarity=-0.019 Sum_probs=47.9
Q ss_pred HHHHHHHHhhcCCCcEEEEeccHHHHHHHHHHHHhCCCeeEEecCCCCHHH-HHHHHHHHhc-cCceEEEEEee
Q psy437 22 KEVISLIKAKYSGQSGIVYCLTRKECDSVAAALAQERINAISYHAGLADKL-RNEVQMKWIS-NKVHVGHWTVV 93 (184)
Q Consensus 22 ~~L~~~l~~~~~~~~~IIf~~tr~~~e~la~~L~~~gi~~~~~hg~l~~~~-R~~~~~~f~~-g~~~vlVaT~t 93 (184)
..+...|.+ .+...++...+....+.+...+...+-++.++.++++..+ -....+...+ |.+.+||..-+
T Consensus 21 ~aia~~l~~--~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~g~id~lv~nAg 92 (252)
T 3h7a_A 21 AEIAKKFAA--EGFTVFAGRRNGEKLAPLVAEIEAAGGRIVARSLDARNEDEVTAFLNAADAHAPLEVTIFNVG 92 (252)
T ss_dssp HHHHHHHHH--TTCEEEEEESSGGGGHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHHHHHHSCEEEEEECCC
T ss_pred HHHHHHHHH--CCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEECcCCCHHHHHHHHHHHHhhCCceEEEECCC
Confidence 445555544 4556677778888888899999888888888999987643 2333333322 68888887654
No 459
>3gfs_A FMN-dependent NADPH-azoreductase; flavoproteins, quinone reductase, flavodoxin, oligomerization, flavoprotein, oxidoreductase; HET: FMN; 2.10A {Bacillus subtilis} SCOP: c.23.5.4 PDB: 1nni_1* 2gsw_A* 3gfr_A* 3gfq_A*
Probab=28.84 E-value=83 Score=21.70 Aligned_cols=21 Identities=5% Similarity=-0.035 Sum_probs=11.0
Q ss_pred HHHHHHHHhccCceEEEEEeec
Q psy437 73 RNEVQMKWISNKVHVGHWTVVS 94 (184)
Q Consensus 73 R~~~~~~f~~g~~~vlVaT~tr 94 (184)
-....+++.+.+. +|++||+-
T Consensus 54 ~~~~~~~i~~aD~-ii~~tP~y 74 (174)
T 3gfs_A 54 VQELKQRVTKADA-IVLLSPEY 74 (174)
T ss_dssp HHHHHHHHHHCSS-EEEEEECS
T ss_pred HHHHHHHHHHCCE-EEEEcCCc
Confidence 3344555554443 66777743
No 460
>4h1h_A LMO1638 protein; MCCF-like, csgid, MCCF homolog, structural genomics, niaid, institute of allergy and infectious diseases; 2.46A {Listeria monocytogenes}
Probab=28.63 E-value=2e+02 Score=22.49 Aligned_cols=49 Identities=6% Similarity=-0.005 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHhCCCeeEEe---------cCCCCHHHHHH-HHHHHhccCceEEEEEeec
Q psy437 45 KECDSVAAALAQERINAISY---------HAGLADKLRNE-VQMKWISNKVHVGHWTVVS 94 (184)
Q Consensus 45 ~~~e~la~~L~~~gi~~~~~---------hg~l~~~~R~~-~~~~f~~g~~~vlVaT~tr 94 (184)
...+...+.|++.|+++..- -++ +.++|.+ +++.|...++++|+|+..=
T Consensus 30 ~~~~~~~~~L~~~G~~v~~~~~~~~~~~~~ag-td~~Ra~dL~~a~~Dp~i~aI~~~rGG 88 (327)
T 4h1h_A 30 NQVEIAVNRLTDMGFKVTFGEHVAEMDCMMSS-SIRSRVADIHEAFNDSSVKAILTVIGG 88 (327)
T ss_dssp HHHHHHHHHHHHTTCEEEECTTTTCCCTTSSC-CHHHHHHHHHHHHHCTTEEEEEESCCC
T ss_pred HHHHHHHHHHHhCCCEEEECcchhhccCcccC-CHHHHHHHHHHHhhCCCCCEEEEcCCc
Confidence 34555667788888877542 223 3455654 5556677788988887644
No 461
>2wem_A Glutaredoxin-related protein 5; chromosome 14 open reading frame 87, Fe/S cluster, oxidoreductase, thioredoxin family, GLRX5, FLB4739, C14ORF87; HET: GTT; 2.40A {Homo sapiens} PDB: 2wul_A*
Probab=28.54 E-value=1.3e+02 Score=19.73 Aligned_cols=55 Identities=11% Similarity=-0.008 Sum_probs=41.2
Q ss_pred eEEEEEee------cccHHHHHHHHHhcCCc-EEEeeCCCChHHHHHHHHHhhCCCceEEEE
Q psy437 86 HVGHWTVV------SKECDSVAAALAQERIN-AISYHAGLADKLRNEVQMKWISNKVHLYNV 140 (184)
Q Consensus 86 ~vlVaT~t------r~~~e~~a~gL~~~gi~-~~vih~~~p~~~r~~~~~~f~~~~~~v~va 140 (184)
+|+|++.+ -..|..+-+.|+..|+. ...+..+.....+.++.+......++.+..
T Consensus 21 ~Vvvfsk~t~~~p~Cp~C~~ak~lL~~~gv~~~~~vdV~~d~~~~~~l~~~tg~~tvP~vfI 82 (118)
T 2wem_A 21 KVVVFLKGTPEQPQCGFSNAVVQILRLHGVRDYAAYNVLDDPELRQGIKDYSNWPTIPQVYL 82 (118)
T ss_dssp SEEEEESBCSSSBSSHHHHHHHHHHHHTTCCCCEEEESSSCHHHHHHHHHHHTCCSSCEEEE
T ss_pred CEEEEEecCCCCCccHHHHHHHHHHHHcCCCCCEEEEcCCCHHHHHHHHHHhCCCCcCeEEE
Confidence 57888874 67899999999999994 778888877777777776544445665543
No 462
>1ae1_A Tropinone reductase-I; oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to tropine, short-chain dehydrogenase; HET: NAP; 2.40A {Datura stramonium} SCOP: c.2.1.2
Probab=28.53 E-value=1.8e+02 Score=21.52 Aligned_cols=70 Identities=11% Similarity=0.092 Sum_probs=43.8
Q ss_pred HHHHHHHHhhcCCCcEEEEeccHHHHHHHHHHHHhCCCeeEEecCCCCHHH-HHHHHHHHhc---cCceEEEEEee
Q psy437 22 KEVISLIKAKYSGQSGIVYCLTRKECDSVAAALAQERINAISYHAGLADKL-RNEVQMKWIS---NKVHVGHWTVV 93 (184)
Q Consensus 22 ~~L~~~l~~~~~~~~~IIf~~tr~~~e~la~~L~~~gi~~~~~hg~l~~~~-R~~~~~~f~~---g~~~vlVaT~t 93 (184)
..+...|.+ .+...++...+....+.+.+.+...+..+..+.++++..+ -....+.... |.+.+||..-.
T Consensus 35 ~aia~~l~~--~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~g~id~lv~nAg 108 (273)
T 1ae1_A 35 YAIVEELAG--LGARVYTCSRNEKELDECLEIWREKGLNVEGSVCDLLSRTERDKLMQTVAHVFDGKLNILVNNAG 108 (273)
T ss_dssp HHHHHHHHH--TTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHTTSCCCEEEECCC
T ss_pred HHHHHHHHH--CCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEECCCCCHHHHHHHHHHHHHHcCCCCcEEEECCC
Confidence 445555544 3455666677777777777777776777777888887543 2333333322 67888887654
No 463
>3sg0_A Extracellular ligand-binding receptor; structural genomics, PSI-biology; HET: 173; 1.20A {Rhodopseudomonas palustris} PDB: 4dqd_A*
Probab=28.47 E-value=1.7e+02 Score=22.38 Aligned_cols=92 Identities=13% Similarity=0.062 Sum_probs=50.7
Q ss_pred hHHHHHHHHHhhcCCCc-EEEEeccH---HHHHHHHHHHHhCCCeeE---EecCCCCHHHHHHHHHHHhccCceEEEEEe
Q psy437 20 VLKEVISLIKAKYSGQS-GIVYCLTR---KECDSVAAALAQERINAI---SYHAGLADKLRNEVQMKWISNKVHVGHWTV 92 (184)
Q Consensus 20 k~~~L~~~l~~~~~~~~-~IIf~~tr---~~~e~la~~L~~~gi~~~---~~hg~l~~~~R~~~~~~f~~g~~~vlVaT~ 92 (184)
-...+.+++.+. ...+ ++|+.++. ...+.+.+.|.+.|+.+. .+..+- .+-...+.++++....+|+++.
T Consensus 146 ~~~~~~~~l~~~-g~~~ia~i~~~~~~~~~~~~~~~~~l~~~g~~v~~~~~~~~~~--~d~~~~~~~~~~~~~dav~~~~ 222 (386)
T 3sg0_A 146 MAEAIGKYIAKT-GAKKVGYIGFSDAYGEGYYKVLAAAAPKLGFELTTHEVYARSD--ASVTGQVLKIIATKPDAVFIAS 222 (386)
T ss_dssp HHHHHHHHHHHT-TCCEEEEEEESSHHHHHHHHHHHHHHHHHTCEECCCEEECTTC--SCCHHHHHHHHHTCCSEEEEEC
T ss_pred HHHHHHHHHHhc-CCCEEEEEecCchHHHHHHHHHHHHHHHcCCEEEEEEeeCCCC--CcHHHHHHHHHhcCCCEEEEec
Confidence 345566666553 2222 44444432 345556667777787653 232221 1223345556666667777766
Q ss_pred ecccHHHHHHHHHhcCCcEEEe
Q psy437 93 VSKECDSVAAALAQERINAISY 114 (184)
Q Consensus 93 tr~~~e~~a~gL~~~gi~~~vi 114 (184)
.-.++-.+.+.+...|++.-++
T Consensus 223 ~~~~a~~~~~~~~~~g~~~~~~ 244 (386)
T 3sg0_A 223 AGTPAVLPQKALRERGFKGAIY 244 (386)
T ss_dssp CSGGGHHHHHHHHHTTCCSEEE
T ss_pred CcchHHHHHHHHHHcCCCCcEE
Confidence 5556667777787888764333
No 464
>3s40_A Diacylglycerol kinase; structural genomics, the center for structural genomics of infectious diseases, csgid, transfer; 2.10A {Bacillus anthracis} PDB: 3t5p_A
Probab=27.95 E-value=2e+02 Score=21.94 Aligned_cols=93 Identities=10% Similarity=0.029 Sum_probs=54.9
Q ss_pred CcEEEEeccH-------HHHHHHHHHHHhCCCeeEEecCCCCHHHHHHHHHHHhccCceEEEEEeecccHHHHHHHHHh-
Q psy437 35 QSGIVYCLTR-------KECDSVAAALAQERINAISYHAGLADKLRNEVQMKWISNKVHVGHWTVVSKECDSVAAALAQ- 106 (184)
Q Consensus 35 ~~~IIf~~tr-------~~~e~la~~L~~~gi~~~~~hg~l~~~~R~~~~~~f~~g~~~vlVaT~tr~~~e~~a~gL~~- 106 (184)
.+.++++|.. +..+.+...|.+.++.+..+...-....+. ..++.. .+...||+.-.-+.+-.++.+|..
T Consensus 9 ~~~~vi~Np~sG~~~~~~~~~~i~~~l~~~~~~~~~~~t~~~~~a~~-~~~~~~-~~~d~vv~~GGDGTl~~v~~~l~~~ 86 (304)
T 3s40_A 9 EKVLLIVNPKAGQGDLHTNLTKIVPPLAAAFPDLHILHTKEQGDATK-YCQEFA-SKVDLIIVFGGDGTVFECTNGLAPL 86 (304)
T ss_dssp SSEEEEECTTCSSSCHHHHHHHHHHHHHHHCSEEEEEECCSTTHHHH-HHHHHT-TTCSEEEEEECHHHHHHHHHHHTTC
T ss_pred CEEEEEECcccCCCchHHHHHHHHHHHHHcCCeEEEEEccCcchHHH-HHHHhh-cCCCEEEEEccchHHHHHHHHHhhC
Confidence 3455555542 344566677777777766654433222222 333333 356788888888888888888876
Q ss_pred -cCCcEEEee----------CCCChHHHHHHHHH
Q psy437 107 -ERINAISYH----------AGLADKLRNEVQMK 129 (184)
Q Consensus 107 -~gi~~~vih----------~~~p~~~r~~~~~~ 129 (184)
.++...++- .++|.+....+...
T Consensus 87 ~~~~~l~iiP~Gt~N~~ar~lg~~~~~~~a~~~i 120 (304)
T 3s40_A 87 EIRPTLAIIPGGTCNDFSRTLGVPQNIAEAAKLI 120 (304)
T ss_dssp SSCCEEEEEECSSCCHHHHHTTCCSSHHHHHHHH
T ss_pred CCCCcEEEecCCcHHHHHHHcCCCccHHHHHHHH
Confidence 566644444 45666666555444
No 465
>1c25_A CDC25A; hydrolase, cell cycle phosphatase,dual specificity protein phosphatase, CDK2; 2.30A {Homo sapiens} SCOP: c.46.1.1
Probab=27.89 E-value=29 Score=23.90 Aligned_cols=32 Identities=6% Similarity=0.151 Sum_probs=23.0
Q ss_pred EEEec-cHHHHHHHHHHHHh----------CCC-eeEEecCCCC
Q psy437 38 IVYCL-TRKECDSVAAALAQ----------ERI-NAISYHAGLA 69 (184)
Q Consensus 38 IIf~~-tr~~~e~la~~L~~----------~gi-~~~~~hg~l~ 69 (184)
|+||. +-..+...+..|.+ .|+ ++..+.||+.
T Consensus 93 v~yC~~sg~rs~~aa~~L~~~~~~~~~l~~~G~~~v~~l~GG~~ 136 (161)
T 1c25_A 93 VFHCEFSSERGPRMCRYVRERDRLGNEYPKLHYPELYVLKGGYK 136 (161)
T ss_dssp EEECSSSSSHHHHHHHHHHHHHHHTSSTTCCSSCCEEEETTHHH
T ss_pred EEEcCCCCcchHHHHHHHHHHHHhhhhccccCCceEEEEcCCHH
Confidence 35798 76666777777765 387 5778889865
No 466
>3tjr_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, SCD, NAD; HET: UNL; 1.60A {Mycobacterium avium subsp}
Probab=27.76 E-value=2e+02 Score=21.75 Aligned_cols=70 Identities=7% Similarity=-0.035 Sum_probs=46.2
Q ss_pred HHHHHHHHhhcCCCcEEEEeccHHHHHHHHHHHHhCCCeeEEecCCCCHHH-HHHHHHHHhc--cCceEEEEEee
Q psy437 22 KEVISLIKAKYSGQSGIVYCLTRKECDSVAAALAQERINAISYHAGLADKL-RNEVQMKWIS--NKVHVGHWTVV 93 (184)
Q Consensus 22 ~~L~~~l~~~~~~~~~IIf~~tr~~~e~la~~L~~~gi~~~~~hg~l~~~~-R~~~~~~f~~--g~~~vlVaT~t 93 (184)
..+...|.+ .+...++...+....+.+.+.|...+..+..+.++++..+ -....+.... |.+.+||.+-+
T Consensus 45 ~~la~~l~~--~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~id~lvnnAg 117 (301)
T 3tjr_A 45 LATATEFAR--RGARLVLSDVDQPALEQAVNGLRGQGFDAHGVVCDVRHLDEMVRLADEAFRLLGGVDVVFSNAG 117 (301)
T ss_dssp HHHHHHHHH--TTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHSSCSEEEECCC
T ss_pred HHHHHHHHH--CCCEEEEEECCHHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHHhCCCCCEEEECCC
Confidence 345555544 4556667777888888888888887878888888887543 2333333322 57888887754
No 467
>1u6t_A SH3 domain-binding glutamic acid-rich-like protein; SH3-binding, glutaredoxin, thioredoxin fold, crystallography, protein binding; HET: CIT; 1.90A {Homo sapiens} PDB: 1wry_A
Probab=27.67 E-value=1.4e+02 Score=19.93 Aligned_cols=36 Identities=14% Similarity=0.083 Sum_probs=29.6
Q ss_pred ccHHHHHHHHHhcCCcEEEeeCCCChHHHHHHHHHh
Q psy437 95 KECDSVAAALAQERINAISYHAGLADKLRNEVQMKW 130 (184)
Q Consensus 95 ~~~e~~a~gL~~~gi~~~vih~~~p~~~r~~~~~~f 130 (184)
++|..+-+.|+..||.-..+..+.....|....+..
T Consensus 17 k~c~~aK~lL~~kgV~feEidI~~d~~~r~eM~~~~ 52 (121)
T 1u6t_A 17 KKQQDVLGFLEANKIGFEEKDIAANEENRKWMRENV 52 (121)
T ss_dssp HHHHHHHHHHHHTTCCEEEEECTTCHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHCCCceEEEECCCCHHHHHHHHHhc
Confidence 344788888999999977899998888888888765
No 468
>3fvw_A Putative NAD(P)H-dependent FMN reductase; Q8DWD8_strmu, SMR99, NESG, structural genomics, PSI-2, protein structure initiative; 2.30A {Streptococcus mutans}
Probab=27.64 E-value=1.6e+02 Score=20.74 Aligned_cols=19 Identities=11% Similarity=0.148 Sum_probs=16.8
Q ss_pred EeeCCCChHHHHHHHHHhh
Q psy437 113 SYHAGLADKLRNEVQMKWI 131 (184)
Q Consensus 113 vih~~~p~~~r~~~~~~f~ 131 (184)
+|++++|...+.++-+.+.
T Consensus 77 ~y~~~~p~~lK~~iD~~~~ 95 (192)
T 3fvw_A 77 VYNYAIPGPVKNLLDWLSR 95 (192)
T ss_dssp CBTTBCCHHHHHHHHHHTS
T ss_pred ccccCCCHHHHHHHHHhhc
Confidence 6899999999999999764
No 469
>3sr3_A Microcin immunity protein MCCF; csgid, structural genomics, MCCF protein, center for structu genomics of infectious diseases, immune system; 1.50A {Bacillus anthracis} PDB: 3gjz_A 3t5m_A* 3u1b_A* 3tyx_A*
Probab=27.61 E-value=1.8e+02 Score=22.97 Aligned_cols=48 Identities=13% Similarity=0.070 Sum_probs=30.3
Q ss_pred HHHHHHHHHHhCCCeeEEe---------cCCCCHHHHHH-HHHHHhccCceEEEEEeec
Q psy437 46 ECDSVAAALAQERINAISY---------HAGLADKLRNE-VQMKWISNKVHVGHWTVVS 94 (184)
Q Consensus 46 ~~e~la~~L~~~gi~~~~~---------hg~l~~~~R~~-~~~~f~~g~~~vlVaT~tr 94 (184)
..+...+.|+..|+++... -++ +.++|.+ +++.|..-++++|+|+..=
T Consensus 32 ~~~~~~~~L~~~G~~v~~~~~~~~~~~~~ag-~d~~Ra~dL~~a~~Dp~i~aI~~~rGG 89 (336)
T 3sr3_A 32 RFERAKSYLLQKGFHILEGSLTGRYDYYRSG-SIQERAKELNALIRNPNVSCIMSTIGG 89 (336)
T ss_dssp HHHHHHHHHHHTTCEEEECTTTTCCBTTBSS-CHHHHHHHHHHHHHCTTEEEEEESCCC
T ss_pred HHHHHHHHHHhCCCEEEEcccccccccccCC-CHHHHHHHHHHHhhCCCCCEEEEcccc
Confidence 3455566788888877642 123 3455655 4555666788888887654
No 470
>1vmd_A MGS, methylglyoxal synthase; TM1185, structural genomics, JCSG, P structure initiative, PSI, joint center for structural GENO lyase; 2.06A {Thermotoga maritima} SCOP: c.24.1.2
Probab=27.54 E-value=97 Score=22.35 Aligned_cols=48 Identities=8% Similarity=-0.065 Sum_probs=36.2
Q ss_pred EEEEEeecccHHHHHHHHHh-cCCcEEEeeCCCChHHHHHHHHHhhCCCceEEEEE
Q psy437 87 VGHWTVVSKECDSVAAALAQ-ERINAISYHAGLADKLRNEVQMKWISNKVHLYNVW 141 (184)
Q Consensus 87 vlVaT~tr~~~e~~a~gL~~-~gi~~~vih~~~p~~~r~~~~~~f~~~~~~v~va~ 141 (184)
-|+||. -.|+.|.. .|+.+..++ ..|..-+..+-...++|++.+++.+
T Consensus 57 ~L~AT~------gTa~~L~e~~Gl~v~~v~-k~~eGG~pqI~d~I~~geIdlVInt 105 (178)
T 1vmd_A 57 ELYATG------TTGALLQEKLGLKVHRLK-SGPLGGDQQIGAMIAEGKIDVLIFF 105 (178)
T ss_dssp EEEECH------HHHHHHHHHHCCCCEECS-CGGGTHHHHHHHHHHTTSCCEEEEE
T ss_pred EEEEch------HHHHHHHHHhCceeEEEe-ecCCCCCchHHHHHHCCCccEEEEc
Confidence 378999 77889988 999987775 3344345678888899998888864
No 471
>8tfv_A Protein (thanatin); bactericidal, fungicidal, antimicrobial; NMR {Synthetic} SCOP: j.3.1.2
Probab=27.43 E-value=23 Score=15.68 Aligned_cols=11 Identities=36% Similarity=0.763 Sum_probs=7.7
Q ss_pred CcEEEEeccHH
Q psy437 35 QSGIVYCLTRK 45 (184)
Q Consensus 35 ~~~IIf~~tr~ 45 (184)
+-.||||+.+.
T Consensus 5 pvpiiycnrrt 15 (21)
T 8tfv_A 5 PVPIIYCNRRT 15 (26)
T ss_dssp CCCCEEEEGGG
T ss_pred cccEEEEcCcc
Confidence 44589998764
No 472
>3g85_A Transcriptional regulator (LACI family); transcription regulator, PSI-II, structural genomics structure initiative; 1.84A {Clostridium acetobutylicum atcc 824}
Probab=27.01 E-value=29 Score=25.86 Aligned_cols=29 Identities=10% Similarity=-0.012 Sum_probs=16.8
Q ss_pred EEEeecccHHHHHHHHHhcCCcE-EEeeCC
Q psy437 89 HWTVVSKECDSVAAALAQERINA-ISYHAG 117 (184)
Q Consensus 89 VaT~tr~~~e~~a~gL~~~gi~~-~vih~~ 117 (184)
|.++.......+++.|-..|.+- .++.+.
T Consensus 107 V~~D~~~~~~~a~~~L~~~G~~~i~~i~~~ 136 (289)
T 3g85_A 107 VNVDNYKMGEKASLLFAKKRYKSAAAILTE 136 (289)
T ss_dssp EEECHHHHHHHHHHHHHHTTCCBCEEEECC
T ss_pred EEeCHHHHHHHHHHHHHHcCCCEEEEEeCC
Confidence 34444456777777887667653 334443
No 473
>1qle_D Cytochrome AA3, ccytochrome C oxidase; oxidoreductase/immune system, complex (oxidoreductase/antibody), electron transport; HET: HEA PC1; 3.0A {Paracoccus denitrificans} SCOP: f.23.8.1
Probab=26.92 E-value=42 Score=18.26 Aligned_cols=20 Identities=10% Similarity=0.142 Sum_probs=17.5
Q ss_pred EecCCCCHHHHHHHHHHHhc
Q psy437 63 SYHAGLADKLRNEVQMKWIS 82 (184)
Q Consensus 63 ~~hg~l~~~~R~~~~~~f~~ 82 (184)
.-||+|+-.+.+++.+.|.+
T Consensus 3 ~~hG~MD~~~hE~Ty~gFi~ 22 (43)
T 1qle_D 3 HKHGEMDIRHQQATFAGFIK 22 (43)
T ss_dssp CCTTCSCCHHHHHHHHHHHH
T ss_pred CCCCCCChHHHHHHHHHHHH
Confidence 45899999999999999975
No 474
>3hjh_A Transcription-repair-coupling factor; MFD, mutation frequency decline, ATP-binding, DNA DAMA repair, DNA-binding, helicase, hydrolase; 1.95A {Escherichia coli} PDB: 2b2n_A* 4dfc_A
Probab=26.31 E-value=77 Score=26.51 Aligned_cols=67 Identities=12% Similarity=0.009 Sum_probs=45.7
Q ss_pred HHHHHHhc-cCceEEEEEeecccHHHHHHHHHhcCCcEEEeeCCCChHHHHHHHHHhhCCCceEEEE-----EecCCccE
Q psy437 75 EVQMKWIS-NKVHVGHWTVVSKECDSVAAALAQERINAISYHAGLADKLRNEVQMKWISNKVHLYNV-----WKIQWKRI 148 (184)
Q Consensus 75 ~~~~~f~~-g~~~vlVaT~tr~~~e~~a~gL~~~gi~~~vih~~~p~~~r~~~~~~f~~~~~~v~va-----~D~~~vr~ 148 (184)
..+.+|.+ ...+|++++.+.+..+.++..|...|+.+ .+-.+.. .+..|.+.++++ |..|+.++
T Consensus 372 ~~L~~~~~~~~~rVvi~a~s~~r~erL~~~L~~~~i~~-~~~~~~~---------~~~~g~v~i~~g~L~~GF~~p~~kl 441 (483)
T 3hjh_A 372 DALRKFLETFDGPVVFSVESEGRREALGELLARIKIAP-QRIMRLD---------EASDRGRYLMIGAAEHGFVDTVRNL 441 (483)
T ss_dssp HHHHHHHHHCCSCEEEEESCSSTTTTTHHHHGGGTCCC-EECSCGG---------GCCTTCEEEEESCCCSCEEETTTTE
T ss_pred HHHHHHHHhCCCeEEEEeCChHHHHHHHHHHHHcCCCc-eecCchh---------hcCCCcEEEEEcccccCcccCCCCE
Confidence 45666663 34689999999999999999999999873 3322211 124566777766 66676666
Q ss_pred EEe
Q psy437 149 IWI 151 (184)
Q Consensus 149 v~~ 151 (184)
++.
T Consensus 442 aVI 444 (483)
T 3hjh_A 442 ALI 444 (483)
T ss_dssp EEE
T ss_pred EEE
Confidence 655
No 475
>3re1_A Uroporphyrinogen-III synthetase; HEMD-like family, uroporphyrinogen III synthase, HMB, lyase; 2.50A {Pseudomonas syringae PV}
Probab=26.05 E-value=17 Score=27.69 Aligned_cols=59 Identities=8% Similarity=0.012 Sum_probs=34.5
Q ss_pred cEEEEeccHHHHHHHHHHHHhCCCeeE---EecCCCCHHHHHHHHHHHhccCceEEEEEeec
Q psy437 36 SGIVYCLTRKECDSVAAALAQERINAI---SYHAGLADKLRNEVQMKWISNKVHVGHWTVVS 94 (184)
Q Consensus 36 ~~IIf~~tr~~~e~la~~L~~~gi~~~---~~hg~l~~~~R~~~~~~f~~g~~~vlVaT~tr 94 (184)
+-|++.......+.+.+.|.+.|+.+. .|.-...........+.+..+...++++|++.
T Consensus 142 ~~vLi~rg~~~r~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~l~~~~~d~v~ftS~s 203 (269)
T 3re1_A 142 SRVLIMRGNEGRELLAEQLRERGVGVDYLPLYRRYLPQHAPGTLLQRVEVERLNGLVVSSGQ 203 (269)
T ss_dssp CEEEEEECSSCCCHHHHHHHHTTCEEEEEECEEEECCCCCTTTTHHHHHHTTCCEEECSSHH
T ss_pred CEEEEEccCccHHHHHHHHHHCCCEEEEEeEEEEECCCCCHHHHHHHHHcCCCCEEEEcCHH
Confidence 344444444556788889988887643 34332222122233455667788888888844
No 476
>3utn_X Thiosulfate sulfurtransferase TUM1; rhodanese-like domain; 1.90A {Saccharomyces cerevisiae}
Probab=26.01 E-value=42 Score=26.61 Aligned_cols=37 Identities=16% Similarity=0.185 Sum_probs=30.1
Q ss_pred CCcEEEEeccHHHHHHHHHHHHhCCCe-eEEecCCCCH
Q psy437 34 GQSGIVYCLTRKECDSVAAALAQERIN-AISYHAGLAD 70 (184)
Q Consensus 34 ~~~~IIf~~tr~~~e~la~~L~~~gi~-~~~~hg~l~~ 70 (184)
..+.|+||.|=-.+-.++-.|...|++ +..|-|+.+.
T Consensus 275 ~k~vI~yCgsGvtA~~~~laL~~lG~~~v~lYdGSWsE 312 (327)
T 3utn_X 275 SKPTICSCGTGVSGVIIKTALELAGVPNVRLYDGSWTE 312 (327)
T ss_dssp TSCEEEECSSSHHHHHHHHHHHHTTCCSEEEESSHHHH
T ss_pred CCCEEEECChHHHHHHHHHHHHHcCCCCceeCCCcHHH
Confidence 456889999988888888888888995 7888887653
No 477
>2qq5_A DHRS1, dehydrogenase/reductase SDR family member 1; short-chain, structura genomics consortium, SGC, oxidoreductase; 1.80A {Homo sapiens}
Probab=25.82 E-value=2e+02 Score=21.05 Aligned_cols=69 Identities=6% Similarity=-0.071 Sum_probs=45.2
Q ss_pred HHHHHHHHhhcCCCcEEEEeccHHHHHHHHHHHHhCCCeeEEecCCCCHHH-HHHHHHHHh---ccCceEEEEEe
Q psy437 22 KEVISLIKAKYSGQSGIVYCLTRKECDSVAAALAQERINAISYHAGLADKL-RNEVQMKWI---SNKVHVGHWTV 92 (184)
Q Consensus 22 ~~L~~~l~~~~~~~~~IIf~~tr~~~e~la~~L~~~gi~~~~~hg~l~~~~-R~~~~~~f~---~g~~~vlVaT~ 92 (184)
..+...|.+ .+...++.+.+....+.+.+.+...+-++..+.++++..+ -....+... -|.+.+||..-
T Consensus 19 ~~ia~~l~~--~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~~g~id~lvnnA 91 (260)
T 2qq5_A 19 RGIALQLCK--AGATVYITGRHLDTLRVVAQEAQSLGGQCVPVVCDSSQESEVRSLFEQVDREQQGRLDVLVNNA 91 (260)
T ss_dssp HHHHHHHHH--TTCEEEEEESCHHHHHHHHHHHHHHSSEEEEEECCTTSHHHHHHHHHHHHHHHTTCCCEEEECC
T ss_pred HHHHHHHHH--CCCEEEEEeCCHHHHHHHHHHHHHcCCceEEEECCCCCHHHHHHHHHHHHHhcCCCceEEEECC
Confidence 345555544 3456666677777777788888766777888888887643 333444442 46788888766
No 478
>2z06_A Putative uncharacterized protein TTHA0625; metal binding protein, structural genomics, NPPSFA; 2.20A {Thermus thermophilus} SCOP: d.159.1.10 PDB: 2cv9_A
Probab=25.25 E-value=77 Score=24.12 Aligned_cols=49 Identities=8% Similarity=0.019 Sum_probs=33.9
Q ss_pred cHHHHHHHHHHHHhCCCeeEEecCCCCHHHHHHHHHHHhccCceEEEEEeec
Q psy437 43 TRKECDSVAAALAQERINAISYHAGLADKLRNEVQMKWISNKVHVGHWTVVS 94 (184)
Q Consensus 43 tr~~~e~la~~L~~~gi~~~~~hg~l~~~~R~~~~~~f~~g~~~vlVaT~tr 94 (184)
.-+.++.+.+.|+ ..+-....|++.+.++ +.+..+..|.+.++|.|-|-
T Consensus 124 pf~~~~~~v~~lk-~d~IIv~~H~g~tsek--~~la~~~dg~Vd~VvGgHTH 172 (252)
T 2z06_A 124 PFRALDRLLEEEK-ADYVLVEVHAEATSEK--MALAHYLDGRASAVLGTHTH 172 (252)
T ss_dssp HHHHHHHHHHHCC-CSEEEEEEECSCHHHH--HHHHHHHBTTBSEEEEESSC
T ss_pred HHHHHHHHHHHhC-CCEEEEEeCCCcHHHH--HHHHHhCCCCeEEEEcCCCC
Confidence 3445666667666 4555677999986653 35556678899999987654
No 479
>3dmn_A Putative DNA helicase; APC89291.2, lactobacillus plantarum WCFS1, STR genomics, PSI-2, midwest center for structural genomics; HET: MSE; 1.66A {Lactobacillus plantarum}
Probab=25.15 E-value=1.7e+02 Score=20.20 Aligned_cols=58 Identities=12% Similarity=0.043 Sum_probs=40.0
Q ss_pred CCCcEEEEeccHHHHHHHHHHHHhCCCeeEEecCCCCHHHHHHHHHHHhccCceEEEEEeecccHHHHHHHHHhcC
Q psy437 33 SGQSGIVYCLTRKECDSVAAALAQERINAISYHAGLADKLRNEVQMKWISNKVHVGHWTVVSKECDSVAAALAQER 108 (184)
Q Consensus 33 ~~~~~IIf~~tr~~~e~la~~L~~~gi~~~~~hg~l~~~~R~~~~~~f~~g~~~vlVaT~tr~~~e~~a~gL~~~g 108 (184)
.....-|.|++...+..+.+.|...|+++..+.++-. .....|.|.|. -.|+||..+.
T Consensus 60 g~~~iAVL~r~~~~~~~l~~~L~~~gi~~~~l~~~~~------------~~~~~v~v~t~------~~~KGlEf~~ 117 (174)
T 3dmn_A 60 ERDTTAIIGKSLAECEALTKALKARGEQVTLIQTENQ------------RLAPGVIVVPS------FLAKGLEFDA 117 (174)
T ss_dssp TTCCEEEEESSHHHHHHHHHHHHTTTCCEEECSSCC-------------CCCSSEEEEEG------GGCTTCCEEE
T ss_pred CCCcEEEEecCHHHHHHHHHHHHHcCCcceeeccccc------------ccCCCeEEEEc------cccCCcCCCE
Confidence 3455678899999999999999999998876655421 01235778887 3356665544
No 480
>1qb0_A Protein (M-phase inducer phosphatase 2 (CDC25B)); hydrolase, cell cycle phosphatase, dual specificity protein phosphatase; 1.91A {Homo sapiens} SCOP: c.46.1.1 PDB: 1cwr_A 1cws_A 2uzq_A
Probab=24.96 E-value=46 Score=24.25 Aligned_cols=32 Identities=9% Similarity=0.142 Sum_probs=22.2
Q ss_pred EEEec-cHHHHHHHHHHHHh----------CCC-eeEEecCCCC
Q psy437 38 IVYCL-TRKECDSVAAALAQ----------ERI-NAISYHAGLA 69 (184)
Q Consensus 38 IIf~~-tr~~~e~la~~L~~----------~gi-~~~~~hg~l~ 69 (184)
|+||. +-..+...+..|.+ .|+ ++..+.||+.
T Consensus 115 VvyC~~sG~rs~~aa~~L~~~~~~~~~l~~~G~~~V~~L~GG~~ 158 (211)
T 1qb0_A 115 IFHCEFSSERGPRMCRFIRERDRAVNDYPSLYYPEMYILKGGYK 158 (211)
T ss_dssp EEECSSSSSHHHHHHHHHHHHHHHTSSTTCCSCCCEEEETTHHH
T ss_pred EEECCCCCccHHHHHHHHHhhhhhhhhhhhcCCCeEEEECCHHH
Confidence 56898 65556666777764 587 4777888853
No 481
>3gr1_A Protein PRGH; type III secretion system, inner membrane protein, cell membrane, membrane, transmembrane, virulence; 2.80A {Salmonella typhimurium}
Probab=24.80 E-value=2.2e+02 Score=21.31 Aligned_cols=132 Identities=12% Similarity=0.078 Sum_probs=82.4
Q ss_pred CCCCeEEEEEEccChHHHHHHHHHhhcCCCcEEEEeccHHHHHHHHHHHHhCC--C------------eeEEec---CCC
Q psy437 6 NRANLKYEILPKKNVLKEVISLIKAKYSGQSGIVYCLTRKECDSVAAALAQER--I------------NAISYH---AGL 68 (184)
Q Consensus 6 ~R~Nl~y~v~~~~~k~~~L~~~l~~~~~~~~~IIf~~tr~~~e~la~~L~~~g--i------------~~~~~h---g~l 68 (184)
.|.|..|.......-.+...+.|.+.....+..|- ...+.-+.+.++|.... + ++..++ +.+
T Consensus 24 grd~~~yVla~~qrd~~W~rq~L~k~~~~~~~~V~-~~~~~~~~i~~~l~~~~P~l~~~~i~l~~P~~Pvl~l~~~r~~~ 102 (227)
T 3gr1_A 24 GRDKMLYVAAQNERDTLWARQVLARGDYDKNARVI-NENEENKRISIWLDTYYPQLAYYRIHFDEPRKPVFWLSRQRNTM 102 (227)
T ss_dssp CTTSCEEEECSSHHHHHHHHHHHHHTTCTTTEEEE-CHHHHHHHHHHHHHHHCTTCCEEEEECSSTTSCEEEEETTTCCC
T ss_pred CCCCcEEEEEccccHHHHHHHHHHhcCCcCCeEEE-ehHHHHHHHHHHHHhcCCceEEEEEEcCCCCCCEEEEEeccccC
Confidence 36677777776665667777777664323343333 56666778888887642 2 333344 568
Q ss_pred CHHHHHHHHHHHhc-----cCceEEEEEeecccHHHHH-HHHHhcCCc----------EEEeeCCCChHHHHHHHH----
Q psy437 69 ADKLRNEVQMKWIS-----NKVHVGHWTVVSKECDSVA-AALAQERIN----------AISYHAGLADKLRNEVQM---- 128 (184)
Q Consensus 69 ~~~~R~~~~~~f~~-----g~~~vlVaT~tr~~~e~~a-~gL~~~gi~----------~~vih~~~p~~~r~~~~~---- 128 (184)
++.++..+.+.++. -++.|.. -+..++..-| .||+.-+|. +++|++.+....-..+.+
T Consensus 103 ~~~~~~~L~~~l~~~~Pya~~v~I~~--~s~~~l~~~Ae~GL~~~ni~yr~i~~~~~vtFiI~~~L~D~~l~~l~~fi~~ 180 (227)
T 3gr1_A 103 SKKELEVLSQKLRALMPYADSVNITL--MDDVTAAGQAEAGLKQQALPYSRRNHKGGVTFVIQGALDDVEILRARQFVDS 180 (227)
T ss_dssp CHHHHHHHHHHHHHHCTTCSCCEEEE--ECHHHHHHHHHHHHHHTTCCEEEEEETTEEEEEECSCCCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCccccceEEE--cCHHHHHHHHHhhHHhcCCceEEEecCCeEEEEEcCCCCHHHHHHHHHHHHH
Confidence 99888888777764 2334443 3344444444 678877766 489999999876554443
Q ss_pred ---HhhCCCceEEEE
Q psy437 129 ---KWISNKVHLYNV 140 (184)
Q Consensus 129 ---~f~~~~~~v~va 140 (184)
.|.+.-+..-+.
T Consensus 181 f~~~WG~~~IqFsI~ 195 (227)
T 3gr1_A 181 YYRTWGGRYVQFAIE 195 (227)
T ss_dssp HHHHHCSSSEEEEEC
T ss_pred HHHHhCccEEEEEEE
Confidence 266666665554
No 482
>1zl0_A Hypothetical protein PA5198; structural genomics, PSI, PROT structure initiative, midwest center for structural genomic unknown function; HET: TLA PEG; 1.10A {Pseudomonas aeruginosa} SCOP: c.8.10.1 c.23.16.7 PDB: 1zrs_A 2aum_A 2aun_A
Probab=24.59 E-value=1.4e+02 Score=23.31 Aligned_cols=49 Identities=12% Similarity=0.051 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHhCCCeeEE---------ecCCCCHHHHHH-HHHHHhccCceEEEEEeec
Q psy437 45 KECDSVAAALAQERINAIS---------YHAGLADKLRNE-VQMKWISNKVHVGHWTVVS 94 (184)
Q Consensus 45 ~~~e~la~~L~~~gi~~~~---------~hg~l~~~~R~~-~~~~f~~g~~~vlVaT~tr 94 (184)
...+...+.|++.|+++.. |.++ +.++|.+ +.+.|...++++|+|+..=
T Consensus 32 ~~~~~~~~~L~~~G~~v~~~~~~~~~~~~~ag-td~~Ra~dL~~a~~Dp~i~aI~~~rGG 90 (311)
T 1zl0_A 32 DVLEATLRQLEVHGVDYHLGRHVEARYRYLAG-TVEQRLEDLHNAFDMPDITAVWCLRGG 90 (311)
T ss_dssp HHHHHHHHHHHHTTCCEEECTTTTCCBTTBSS-CHHHHHHHHHHHHHSTTEEEEEESCCS
T ss_pred HHHHHHHHHHHhCCCEEEECccccccccccCC-CHHHHHHHHHHHHhCCCCCEEEEccCC
Confidence 4456666778888887664 2334 3455554 5556667788888877654
No 483
>1qys_A TOP7; alpha-beta, novel fold, de novo protein; 2.50A {Computationally designed sequence} SCOP: k.41.1.1
Probab=24.48 E-value=1.3e+02 Score=18.57 Aligned_cols=37 Identities=30% Similarity=0.331 Sum_probs=24.0
Q ss_pred hHHHHHHHHHhhcC-CCcEEEEeccHHHHHHHHHHHHh
Q psy437 20 VLKEVISLIKAKYS-GQSGIVYCLTRKECDSVAAALAQ 56 (184)
Q Consensus 20 k~~~L~~~l~~~~~-~~~~IIf~~tr~~~e~la~~L~~ 56 (184)
.+..|.+.+++... ....-|-..|++.++..+..|.+
T Consensus 32 vlnelmdyikkqgakrvrisitartkkeaekfaailik 69 (106)
T 1qys_A 32 VLNELMDYIKKQGAKRVRISITARTKKEAEKFAAILIK 69 (106)
T ss_dssp HHHHHHHHHHHHCCSEEEEEEECSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCcEEEEEEEecchhHHHHHHHHHHH
Confidence 45667777766411 11233567899999998887753
No 484
>3gon_A Phosphomevalonate kinase; GHMP kinase superfamily, ATP-binding, nucleotide- binding, transferase; HET: PMV ANP; 1.90A {Streptococcus pneumoniae} PDB: 1k47_A
Probab=24.44 E-value=1e+02 Score=23.56 Aligned_cols=28 Identities=14% Similarity=0.266 Sum_probs=21.6
Q ss_pred CcEEEEeccHHHHHHHHHHHHhCCCeeE
Q psy437 35 QSGIVYCLTRKECDSVAAALAQERINAI 62 (184)
Q Consensus 35 ~~~IIf~~tr~~~e~la~~L~~~gi~~~ 62 (184)
+++|.+|.+...++.+.+.+++.|+...
T Consensus 297 gc~ial~~~~~~~~~i~~~~~~~Gi~~~ 324 (335)
T 3gon_A 297 DCGIALSFDAQSTKTLKNRWADLGIELL 324 (335)
T ss_dssp SEEEEEECSHHHHHHHHHHHHHTTCEEE
T ss_pred heEEEEECCHHHHHHHHHHHHHCCCcEE
Confidence 3456688888888888888888888764
No 485
>3gbc_A Pyrazinamidase/nicotinamidas PNCA; nicotinamidase - pyrazinamidase, resistance to pyrazinamide, hydrolase; 2.20A {Mycobacterium tuberculosis} PDB: 3pl1_A
Probab=24.37 E-value=1.9e+02 Score=20.39 Aligned_cols=61 Identities=10% Similarity=0.117 Sum_probs=39.7
Q ss_pred HHHHHHHhhcCCCcEEEEe--ccHHHHHHHHHHHHhCCCeeEE---ecCCCCHHHHHHHHHHHhccCc
Q psy437 23 EVISLIKAKYSGQSGIVYC--LTRKECDSVAAALAQERINAIS---YHAGLADKLRNEVQMKWISNKV 85 (184)
Q Consensus 23 ~L~~~l~~~~~~~~~IIf~--~tr~~~e~la~~L~~~gi~~~~---~hg~l~~~~R~~~~~~f~~g~~ 85 (184)
.|..+|++ .+...|++| .|--.+...+..+...|+++.+ ..++.+++.....++.++...+
T Consensus 115 ~L~~~L~~--~gi~~lvv~G~~t~~CV~~Ta~da~~~G~~v~v~~Da~~~~~~~~~~~al~~m~~~G~ 180 (186)
T 3gbc_A 115 PLLNWLRQ--RGVDEVDVVGIATDHCVRQTAEDAVRNGLATRVLVDLTAGVSADTTVAALEEMRTASV 180 (186)
T ss_dssp BHHHHHHH--TTCCEEEEEEECTTTHHHHHHHHHHHTTCEEEEEEEEEECSCHHHHHHHHHHHHHTTC
T ss_pred cHHHHHHh--cCCCEEEEEEecccHHHHHHHHHHHHCCCeEEEEhhhcCCCCHHHHHHHHHHHHHcCC
Confidence 46666655 344555554 5666677777777778887655 3456677777777777776444
No 486
>1req_A Methylmalonyl-COA mutase; isomerase, intramolecular transferase; HET: B12 DCA; 2.00A {Propionibacterium freudenreichii subspshermanii} SCOP: c.1.19.1 c.23.6.1 PDB: 2req_A* 3req_A* 4req_A* 6req_A* 7req_A* 5req_A* 1e1c_A*
Probab=24.22 E-value=3.7e+02 Score=23.86 Aligned_cols=81 Identities=14% Similarity=0.111 Sum_probs=52.6
Q ss_pred HHHHHHHHHHhCCCeeEEecCCCCHHHHHHHHHHHhccCceEEEEEeec----ccHHHHHHHHHhcCC-cEEEeeCC-CC
Q psy437 46 ECDSVAAALAQERINAISYHAGLADKLRNEVQMKWISNKVHVGHWTVVS----KECDSVAAALAQERI-NAISYHAG-LA 119 (184)
Q Consensus 46 ~~e~la~~L~~~gi~~~~~hg~l~~~~R~~~~~~f~~g~~~vlVaT~tr----~~~e~~a~gL~~~gi-~~~vih~~-~p 119 (184)
-...++..|...|+.+.. +|... .-+++.+..+..+..+|+.+..- ..+..+...|...|+ ++.|+=|| .|
T Consensus 612 G~~iVa~~l~~~GfeVi~--lG~~v-~~eeiv~aA~e~~adiVglSsl~~~~~~~~~~vi~~L~~~G~~~i~VivGG~~p 688 (727)
T 1req_A 612 GQKVIATAYADLGFDVDV--GPLFQ-TPEETARQAVEADVHVVGVSSLAGGHLTLVPALRKELDKLGRPDILITVGGVIP 688 (727)
T ss_dssp HHHHHHHHHHHHTCEEEE--CCTTB-CHHHHHHHHHHTTCSEEEEEECSSCHHHHHHHHHHHHHHTTCTTSEEEEEESCC
T ss_pred HHHHHHHHHHhCCeEEEe--CCCCC-CHHHHHHHHHHcCCCEEEEeeecHhHHHHHHHHHHHHHhcCCCCCEEEEcCCCc
Confidence 356678888888999854 34322 12457788887788877666544 356778888888887 44555565 66
Q ss_pred hHHHHHHHHH
Q psy437 120 DKLRNEVQMK 129 (184)
Q Consensus 120 ~~~r~~~~~~ 129 (184)
........+.
T Consensus 689 ~~d~~~l~~~ 698 (727)
T 1req_A 689 EQDFDELRKD 698 (727)
T ss_dssp GGGHHHHHHT
T ss_pred cccHHHHHhC
Confidence 6544444443
No 487
>4evq_A Putative ABC transporter subunit, substrate-bindi component; structural genomics, PSI-biology, midwest center for structu genomics; HET: MSE PHB; 1.40A {Rhodopseudomonas palustris} PDB: 4evr_A
Probab=24.21 E-value=2.4e+02 Score=21.47 Aligned_cols=94 Identities=4% Similarity=-0.166 Sum_probs=50.0
Q ss_pred HHHHHHHHHhhcCCCcEEEEeccH---HHHHHHHHHHHhCCCeeEE---ecCCCCHHHHHHHHHHHhccCceEEEEEeec
Q psy437 21 LKEVISLIKAKYSGQSGIVYCLTR---KECDSVAAALAQERINAIS---YHAGLADKLRNEVQMKWISNKVHVGHWTVVS 94 (184)
Q Consensus 21 ~~~L~~~l~~~~~~~~~IIf~~tr---~~~e~la~~L~~~gi~~~~---~hg~l~~~~R~~~~~~f~~g~~~vlVaT~tr 94 (184)
...+.+++.+.....-++|+.++. ...+.+.+.|.+.|+.+.. +..+-. +-...++++++....+|++...-
T Consensus 139 ~~~~~~~l~~~g~~~ia~i~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~~~~~~~--d~~~~~~~l~~~~~dai~~~~~~ 216 (375)
T 4evq_A 139 GRATGDAMIKAGLKKAVTVTWKYAAGEEMVSGFKKSFTAGKGEVVKDITIAFPDV--EFQSALAEIASLKPDCVYAFFSG 216 (375)
T ss_dssp HHHHHHHHHHTTCCEEEEEEESSHHHHHHHHHHHHHHHHTTCEEEEEEEECTTCC--CCHHHHHHHHHHCCSEEEEECCT
T ss_pred HHHHHHHHHHcCCcEEEEEecCchHHHHHHHHHHHHHHHcCCeEEEEEecCCCCc--cHHHHHHHHHhcCCCEEEEecCc
Confidence 445666665531222244444432 3355566777788887532 222211 12234555555566777774444
Q ss_pred ccHHHHHHHHHhcCCcEEEeeC
Q psy437 95 KECDSVAAALAQERINAISYHA 116 (184)
Q Consensus 95 ~~~e~~a~gL~~~gi~~~vih~ 116 (184)
.++-.+.+.+...|+++-++..
T Consensus 217 ~~a~~~~~~~~~~g~~vp~~~~ 238 (375)
T 4evq_A 217 GGALKFIKDYAAANLGIPLWGP 238 (375)
T ss_dssp HHHHHHHHHHHHTTCCCCEEEE
T ss_pred chHHHHHHHHHHcCCCceEEec
Confidence 5566666777788877544443
No 488
>3ipc_A ABC transporter, substrate binding protein (amino; venus flytrap domain, transport protein; 1.30A {Agrobacterium tumefaciens} PDB: 3ip5_A 3ip6_A 3ip7_A 3ip9_A 3ipa_A
Probab=24.11 E-value=2.3e+02 Score=21.35 Aligned_cols=51 Identities=12% Similarity=-0.022 Sum_probs=22.8
Q ss_pred EEEEeccHH---HHHHHHHHHHhCCCeeEEecCCCCHHHHHHHHHHHhccCceEEE
Q psy437 37 GIVYCLTRK---ECDSVAAALAQERINAISYHAGLADKLRNEVQMKWISNKVHVGH 89 (184)
Q Consensus 37 ~IIf~~tr~---~~e~la~~L~~~gi~~~~~hg~l~~~~R~~~~~~f~~g~~~vlV 89 (184)
.++++.+.. .+...++.|...++.+ +-|..+...-..+........+++|.
T Consensus 45 ~l~~~d~~~~~~~~~~~~~~l~~~~v~~--iig~~~s~~~~~~~~~~~~~~ip~v~ 98 (356)
T 3ipc_A 45 KIVLGDDVSDPKQGISVANKFVADGVKF--VVGHANSGVSIPASEVYAENGILEIT 98 (356)
T ss_dssp EEEEEECTTCHHHHHHHHHHHHHTTCCE--EEECSSHHHHHHHHHHHHTTTCEEEE
T ss_pred EEEEecCCCCHHHHHHHHHHHHHCCCcE--EEcCCCcHHHHHHHHHHHhCCCeEEe
Confidence 355555433 3334444444444433 22333444444444555555555443
No 489
>4b4t_W RPN10, 26S proteasome regulatory subunit RPN10; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=24.05 E-value=53 Score=25.30 Aligned_cols=37 Identities=11% Similarity=0.112 Sum_probs=30.5
Q ss_pred CceEEEEEeec-----ccHHHHHHHHHhcCCcEEEeeCCCCh
Q psy437 84 KVHVGHWTVVS-----KECDSVAAALAQERINAISYHAGLAD 120 (184)
Q Consensus 84 ~~~vlVaT~tr-----~~~e~~a~gL~~~gi~~~vih~~~p~ 120 (184)
.-+||++|++- +++..+|+.+.+.||.+.+|.+|...
T Consensus 107 ~~rIIlf~ds~~~~~~~~l~~lak~lkk~gI~v~vIgFG~~~ 148 (268)
T 4b4t_W 107 HQRIVAFVCSPISDSRDELIRLAKTLKKNNVAVDIINFGEIE 148 (268)
T ss_dssp EEEEEEEECSCCSSCHHHHHHHHHHHHHHTEEEEEEEESSCC
T ss_pred ceEEEEEECCCCCCCHHHHHHHHHHHHHcCCEEEEEEeCCCc
Confidence 44788998775 57889999999999999999998643
No 490
>2obb_A Hypothetical protein; structural genomics, PSI-2, PR structure initiative, midwest center for structural genomic unknown function; 2.20A {Bacteroides thetaiotaomicron} SCOP: c.108.1.25
Probab=24.05 E-value=90 Score=21.40 Aligned_cols=51 Identities=12% Similarity=0.067 Sum_probs=33.9
Q ss_pred HHHHHHHHhccCceEEEEEeec-ccHHHHHHHHHhcCCcEEEeeCCCChHHH
Q psy437 73 RNEVQMKWISNKVHVGHWTVVS-KECDSVAAALAQERINAISYHAGLADKLR 123 (184)
Q Consensus 73 R~~~~~~f~~g~~~vlVaT~tr-~~~e~~a~gL~~~gi~~~vih~~~p~~~r 123 (184)
-.+++++++.....+++||.-- ...+.+...|+..|+....+..+-|....
T Consensus 29 ~~~al~~l~~~G~~iii~TgR~~~~~~~~~~~l~~~gi~~~~I~~n~P~~~~ 80 (142)
T 2obb_A 29 AVETLKLLQQEKHRLILWSVREGELLDEAIEWCRARGLEFYAANKDYPEEER 80 (142)
T ss_dssp HHHHHHHHHHTTCEEEECCSCCHHHHHHHHHHHHTTTCCCSEESSSSTTC--
T ss_pred HHHHHHHHHHCCCEEEEEeCCCcccHHHHHHHHHHcCCCeEEEEcCCchhhh
Confidence 3466677776667778877632 24556677788889886677777776544
No 491
>1vp8_A Hypothetical protein AF0103; putative pyruvate kinase, structural genomics, joint center structural genomics, JCSG; HET: MSE FMN; 1.30A {Archaeoglobus fulgidus} SCOP: c.49.1.2
Probab=24.02 E-value=2e+02 Score=21.08 Aligned_cols=71 Identities=11% Similarity=0.102 Sum_probs=0.0
Q ss_pred ccHHHHHHHHHHHHhCCCeeEEecCCCCHHHHHHHHHHHhccCceEEEEEeecccHHHHHHHHHhcCCcEEEeeCCCChH
Q psy437 42 LTRKECDSVAAALAQERINAISYHAGLADKLRNEVQMKWISNKVHVGHWTVVSKECDSVAAALAQERINAISYHAGLADK 121 (184)
Q Consensus 42 ~tr~~~e~la~~L~~~gi~~~~~hg~l~~~~R~~~~~~f~~g~~~vlVaT~tr~~~e~~a~gL~~~gi~~~vih~~~p~~ 121 (184)
||....+...+..++.|++-.++-+.--...+...- .+ .| ++++|.|- ..|...+|.. .||++
T Consensus 27 NT~~tl~la~era~e~~Ik~iVVAS~sG~TA~k~~e-~~-~~-i~lVvVTh--------~~GF~~pg~~------e~~~e 89 (201)
T 1vp8_A 27 NTEETLRLAVERAKELGIKHLVVASSYGDTAMKALE-MA-EG-LEVVVVTY--------HTGFVREGEN------TMPPE 89 (201)
T ss_dssp GHHHHHHHHHHHHHHHTCCEEEEECSSSHHHHHHHH-HC-TT-CEEEEEEC--------CTTSSSTTCC------SSCHH
T ss_pred cHHHHHHHHHHHHHHcCCCEEEEEeCCChHHHHHHH-Hh-cC-CeEEEEeC--------cCCCCCCCCC------cCCHH
Q ss_pred HHHHHHHH
Q psy437 122 LRNEVQMK 129 (184)
Q Consensus 122 ~r~~~~~~ 129 (184)
.+..+.+.
T Consensus 90 ~~~~L~~~ 97 (201)
T 1vp8_A 90 VEEELRKR 97 (201)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHhC
No 492
>1byk_A Protein (trehalose operon repressor); LACI family, phosphate binding, protein structure, trehalose repressor, gene regulation; HET: T6P; 2.50A {Escherichia coli} SCOP: c.93.1.1
Probab=23.18 E-value=2.1e+02 Score=20.45 Aligned_cols=26 Identities=15% Similarity=0.022 Sum_probs=15.5
Q ss_pred EEEeecccHHHHHHHHHhcCCcEEEe
Q psy437 89 HWTVVSKECDSVAAALAQERINAISY 114 (184)
Q Consensus 89 VaT~tr~~~e~~a~gL~~~gi~~~vi 114 (184)
|.++.......+++.|-..|.+-.++
T Consensus 95 V~~d~~~~~~~a~~~L~~~G~~~I~~ 120 (255)
T 1byk_A 95 VCYDDEGAIKILMQRLYDQGHRNISY 120 (255)
T ss_dssp EEECHHHHHHHHHHHHHHTTCCCEEE
T ss_pred EEEccHHHHHHHHHHHHHcCCCeEEE
Confidence 33444455677778887777663333
No 493
>2pju_A Propionate catabolism operon regulatory protein; structural genomics, PRPR, transcriptional regulation, PSI- 2, protein structure initiative; 2.10A {Escherichia coli} SCOP: c.92.3.1
Probab=23.15 E-value=2.3e+02 Score=20.93 Aligned_cols=81 Identities=14% Similarity=0.083 Sum_probs=58.4
Q ss_pred EEE-EeccHHHHHHHHHHHHhCCCeeEEecCCCCHHHHHHHHHHHhccCceEEEEEeecccHHHHHHHHHhcCCcEEEee
Q psy437 37 GIV-YCLTRKECDSVAAALAQERINAISYHAGLADKLRNEVQMKWISNKVHVGHWTVVSKECDSVAAALAQERINAISYH 115 (184)
Q Consensus 37 ~II-f~~tr~~~e~la~~L~~~gi~~~~~hg~l~~~~R~~~~~~f~~g~~~vlVaT~tr~~~e~~a~gL~~~gi~~~vih 115 (184)
++| |-+....++.+.+.|.. .+....|+ +.++-...+++.+...++++|+.. .+...-...|+++..+.
T Consensus 110 avVg~~~~~~~~~~i~~ll~~-~i~~~~~~---~~ee~~~~i~~l~~~G~~vVVG~~------~~~~~A~~~Gl~~vlI~ 179 (225)
T 2pju_A 110 GVVTYQETIPALVAFQKTFNL-RLDQRSYI---TEEDARGQINELKANGTEAVVGAG------LITDLAEEAGMTGIFIY 179 (225)
T ss_dssp EEEEESSCCHHHHHHHHHHTC-CEEEEEES---SHHHHHHHHHHHHHTTCCEEEESH------HHHHHHHHTTSEEEESS
T ss_pred EEEeCchhhhHHHHHHHHhCC-ceEEEEeC---CHHHHHHHHHHHHHCCCCEEECCH------HHHHHHHHcCCcEEEEC
Confidence 455 67777888888888743 34455554 456777888888888899999877 55555578899855555
Q ss_pred CCCChHHHHHHHHH
Q psy437 116 AGLADKLRNEVQMK 129 (184)
Q Consensus 116 ~~~p~~~r~~~~~~ 129 (184)
+ ..+.+..+.+.
T Consensus 180 -s-~eSI~~Ai~eA 191 (225)
T 2pju_A 180 -S-AATVRQAFSDA 191 (225)
T ss_dssp -C-HHHHHHHHHHH
T ss_pred -C-HHHHHHHHHHH
Confidence 6 78888888887
No 494
>1zem_A Xylitol dehydrogenase; rossmann fold, dinucleotide-binding domain, oxidoreductase; HET: NAD; 1.90A {Gluconobacter oxydans} SCOP: c.2.1.2
Probab=23.07 E-value=2.2e+02 Score=20.77 Aligned_cols=69 Identities=10% Similarity=0.087 Sum_probs=43.1
Q ss_pred HHHHHHHHhhcCCCcEEEEeccHHHHHHHHHHHHhCCCeeEEecCCCCHHH-HHHHHHHHhc--cCceEEEEEe
Q psy437 22 KEVISLIKAKYSGQSGIVYCLTRKECDSVAAALAQERINAISYHAGLADKL-RNEVQMKWIS--NKVHVGHWTV 92 (184)
Q Consensus 22 ~~L~~~l~~~~~~~~~IIf~~tr~~~e~la~~L~~~gi~~~~~hg~l~~~~-R~~~~~~f~~--g~~~vlVaT~ 92 (184)
..+...|.+ .+...++...+....+.+...+...+..+..+.++++..+ -....+.... |.+.+||..-
T Consensus 21 ~~ia~~l~~--~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~id~lv~nA 92 (262)
T 1zem_A 21 LATALRLAE--EGTAIALLDMNREALEKAEASVREKGVEARSYVCDVTSEEAVIGTVDSVVRDFGKIDFLFNNA 92 (262)
T ss_dssp HHHHHHHHH--TTCEEEEEESCHHHHHHHHHHHHTTTSCEEEEECCTTCHHHHHHHHHHHHHHHSCCCEEEECC
T ss_pred HHHHHHHHH--CCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHHhCCCCEEEECC
Confidence 345555544 3455666677777777888888776777777888887543 2223333322 5788888754
No 495
>2wci_A Glutaredoxin-4; redox-active center, iron-sulfur cluster scaffolder, Fe2S2, homodimer, transport, glutathione, thioredoxin fold; HET: GSH; 1.90A {Escherichia coli} PDB: 1yka_A
Probab=23.02 E-value=1.8e+02 Score=19.55 Aligned_cols=65 Identities=11% Similarity=-0.101 Sum_probs=43.6
Q ss_pred HHHHHHHHhccCceEEEEEe------ecccHHHHHHHHHhcCCcEEEeeCCCChHHHHHHHHHhhCCCceEEE
Q psy437 73 RNEVQMKWISNKVHVGHWTV------VSKECDSVAAALAQERINAISYHAGLADKLRNEVQMKWISNKVHLYN 139 (184)
Q Consensus 73 R~~~~~~f~~g~~~vlVaT~------tr~~~e~~a~gL~~~gi~~~vih~~~p~~~r~~~~~~f~~~~~~v~v 139 (184)
...+.+..... +|+|||. .-..|..+-+.|+..|++...++.+.....+..+.+......+++++
T Consensus 25 ~~~v~~~i~~~--~Vvvy~ks~~~~~~Cp~C~~ak~~L~~~gv~y~~vdI~~d~~~~~~L~~~~G~~tvP~Vf 95 (135)
T 2wci_A 25 IEKIQRQIAEN--PILLYMKGSPKLPSCGFSAQAVQALAACGERFAYVDILQNPDIRAELPKYANWPTFPQLW 95 (135)
T ss_dssp HHHHHHHHHHC--SEEEEESBCSSSBSSHHHHHHHHHHHTTCSCCEEEEGGGCHHHHHHHHHHHTCCSSCEEE
T ss_pred HHHHHHHhccC--CEEEEEEecCCCCCCccHHHHHHHHHHcCCceEEEECCCCHHHHHHHHHHHCCCCcCEEE
Confidence 33444444333 5677766 45789999999999999977888877666777766654444555554
No 496
>2ae2_A Protein (tropinone reductase-II); oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to pseudotropine; HET: NAP PTO; 1.90A {Datura stramonium} SCOP: c.2.1.2 PDB: 2ae1_A* 1ipe_A* 1ipf_A*
Probab=22.94 E-value=2.2e+02 Score=20.71 Aligned_cols=70 Identities=11% Similarity=0.087 Sum_probs=43.9
Q ss_pred HHHHHHHHhhcCCCcEEEEeccHHHHHHHHHHHHhCCCeeEEecCCCCHHH-HHHHHHHHhc---cCceEEEEEee
Q psy437 22 KEVISLIKAKYSGQSGIVYCLTRKECDSVAAALAQERINAISYHAGLADKL-RNEVQMKWIS---NKVHVGHWTVV 93 (184)
Q Consensus 22 ~~L~~~l~~~~~~~~~IIf~~tr~~~e~la~~L~~~gi~~~~~hg~l~~~~-R~~~~~~f~~---g~~~vlVaT~t 93 (184)
..+...|.+ .+...++...+.+..+.+.+.|...+.++..+.++++..+ -....+.... |.+.+||..-+
T Consensus 23 ~~ia~~l~~--~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~g~id~lv~~Ag 96 (260)
T 2ae2_A 23 YGIVEELAS--LGASVYTCSRNQKELNDCLTQWRSKGFKVEASVCDLSSRSERQELMNTVANHFHGKLNILVNNAG 96 (260)
T ss_dssp HHHHHHHHH--TTCEEEEEESCHHHHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHHHHHHTTTCCCEEEECCC
T ss_pred HHHHHHHHH--CCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHcCCCCCEEEECCC
Confidence 345555544 3456666677777777777778776777777888887543 2333333322 67888887654
No 497
>4g81_D Putative hexonate dehydrogenase; enzyme function initiative, EFI, structural genomics, dehydr oxidoreductase; 1.90A {Salmonella enterica subsp}
Probab=22.87 E-value=2.4e+02 Score=21.10 Aligned_cols=43 Identities=9% Similarity=0.030 Sum_probs=20.2
Q ss_pred HHHHHHHHhcCCcEEEeeCCCChH--HHHHHHHHh-hCCCceEEEE
Q psy437 98 DSVAAALAQERINAISYHAGLADK--LRNEVQMKW-ISNKVHLYNV 140 (184)
Q Consensus 98 e~~a~gL~~~gi~~~vih~~~p~~--~r~~~~~~f-~~~~~~v~va 140 (184)
+.++..|...|.++..+..|+... .+..+.+.. .-|++.++|.
T Consensus 47 ~~~~~~l~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~G~iDiLVN 92 (255)
T 4g81_D 47 AESVDTLTRKGYDAHGVAFDVTDELAIEAAFSKLDAEGIHVDILIN 92 (255)
T ss_dssp HHHHHHHHHTTCCEEECCCCTTCHHHHHHHHHHHHHTTCCCCEEEE
T ss_pred HHHHHHHHhcCCcEEEEEeeCCCHHHHHHHHHHHHHHCCCCcEEEE
Confidence 344444555555555555665442 233333332 2255666664
No 498
>3tfo_A Putative 3-oxoacyl-(acyl-carrier-protein) reducta; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.08A {Sinorhizobium meliloti}
Probab=22.86 E-value=2.4e+02 Score=20.94 Aligned_cols=82 Identities=11% Similarity=0.035 Sum_probs=40.3
Q ss_pred cEEEEeccHHHHHHHHHHHHhCCCeeEEecCCCCHHHHHHHHHHHhccCceE-EEEEeecc--cHHHHHHHHH--hcCCc
Q psy437 36 SGIVYCLTRKECDSVAAALAQERINAISYHAGLADKLRNEVQMKWISNKVHV-GHWTVVSK--ECDSVAAALA--QERIN 110 (184)
Q Consensus 36 ~~IIf~~tr~~~e~la~~L~~~gi~~~~~hg~l~~~~R~~~~~~f~~g~~~v-lVaT~tr~--~~e~~a~gL~--~~gi~ 110 (184)
.+||--.+.---..++..|.+.|.++.... .+.+.-..+.+.+.....++ .+.++... .++.+...+. ..+++
T Consensus 6 ~~lVTGas~GIG~aia~~la~~G~~V~~~~--r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~iD 83 (264)
T 3tfo_A 6 VILITGASGGIGEGIARELGVAGAKILLGA--RRQARIEAIATEIRDAGGTALAQVLDVTDRHSVAAFAQAAVDTWGRID 83 (264)
T ss_dssp EEEESSTTSHHHHHHHHHHHHTTCEEEEEE--SSHHHHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHHHHHHHSCCC
T ss_pred EEEEeCCccHHHHHHHHHHHHCCCEEEEEE--CCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHcCCCC
Confidence 345545566666778888888887765542 33333334444443322222 23333322 2333333331 23677
Q ss_pred EEEeeCCCC
Q psy437 111 AISYHAGLA 119 (184)
Q Consensus 111 ~~vih~~~p 119 (184)
++|.++|..
T Consensus 84 ~lVnnAG~~ 92 (264)
T 3tfo_A 84 VLVNNAGVM 92 (264)
T ss_dssp EEEECCCCC
T ss_pred EEEECCCCC
Confidence 666666653
No 499
>1j5p_A Aspartate dehydrogenase; TM1643, structural genomics, JCSG, protein structure initiative, joint center for structural G oxidoreductase; HET: NAD; 1.90A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.3 PDB: 1h2h_A*
Probab=22.86 E-value=2.5e+02 Score=21.26 Aligned_cols=79 Identities=10% Similarity=0.123 Sum_probs=52.3
Q ss_pred CcEEEEeccHHHHHHHHHHHHhCCCeeEEecCC-C-CHHHHHHHHHHHhccCceEEEEEeecccHHHHHHHHHhcCCcEE
Q psy437 35 QSGIVYCLTRKECDSVAAALAQERINAISYHAG-L-ADKLRNEVQMKWISNKVHVGHWTVVSKECDSVAAALAQERINAI 112 (184)
Q Consensus 35 ~~~IIf~~tr~~~e~la~~L~~~gi~~~~~hg~-l-~~~~R~~~~~~f~~g~~~vlVaT~tr~~~e~~a~gL~~~gi~~~ 112 (184)
.-.+|+|.+....++....+-+.|..+.....+ + +++.++.+.+.-+.|..++.+.+-+-.-.|.++-.. .+++..
T Consensus 61 pD~VVe~A~~~av~e~~~~iL~aG~dvv~~S~gaLad~~l~~~L~~aA~~gg~~l~vpSGAi~GlD~l~aa~--g~l~~V 138 (253)
T 1j5p_A 61 VSTVVECASPEAVKEYSLQILKNPVNYIIISTSAFADEVFRERFFSELKNSPARVFFPSGAIGGLDVLSSIK--DFVKNV 138 (253)
T ss_dssp CCEEEECSCHHHHHHHHHHHTTSSSEEEECCGGGGGSHHHHHHHHHHHHTCSCEEECCCTTCCCHHHHHHHG--GGEEEE
T ss_pred CCEEEECCCHHHHHHHHHHHHHCCCCEEEcChhhhcCHHHHHHHHHHHHHCCCeEEecCCcccchhHHHHhc--CCccEE
Confidence 458899999988887666666678887765544 2 566677777778888888766666555445553333 555533
Q ss_pred Eee
Q psy437 113 SYH 115 (184)
Q Consensus 113 vih 115 (184)
.|-
T Consensus 139 ~~~ 141 (253)
T 1j5p_A 139 RIE 141 (253)
T ss_dssp EEE
T ss_pred EEE
Confidence 333
No 500
>1t1v_A SH3BGRL3, SH3 domain-binding glutamic acid-rich protein-LIK; glutaredoxin, thioredoxin fold, protein 3D-structure, X-RAY crystallography; 1.60A {Mus musculus} SCOP: c.47.1.14 PDB: 1j0f_A 1sj6_A
Probab=22.76 E-value=1.4e+02 Score=18.14 Aligned_cols=54 Identities=15% Similarity=0.084 Sum_probs=37.1
Q ss_pred eEEEEEe-ecccH------HHHHHHHHhcCCcEEEeeCCCChHHHHHHHHHhh--CCCceEEE
Q psy437 86 HVGHWTV-VSKEC------DSVAAALAQERINAISYHAGLADKLRNEVQMKWI--SNKVHLYN 139 (184)
Q Consensus 86 ~vlVaT~-tr~~~------e~~a~gL~~~gi~~~vih~~~p~~~r~~~~~~f~--~~~~~v~v 139 (184)
+|+|+|. .-..| ..+-+.|+..|+....+..+.....+..+.+... ...++.++
T Consensus 3 ~v~ly~~~~C~~c~~~~~~~~ak~~L~~~~i~~~~~di~~~~~~~~~l~~~~g~~~~~vP~if 65 (93)
T 1t1v_A 3 GLRVYSTSVTGSREIKSQQSEVTRILDGKRIQYQLVDISQDNALRDEMRTLAGNPKATPPQIV 65 (93)
T ss_dssp CEEEEECSSCSCHHHHHHHHHHHHHHHHTTCCCEEEETTSCHHHHHHHHHHTTCTTCCSCEEE
T ss_pred CEEEEEcCCCCCchhhHHHHHHHHHHHHCCCceEEEECCCCHHHHHHHHHHhCCCCCCCCEEE
Confidence 3555554 34567 7888889999999777888877777777766543 23566554
Done!