RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy437
(184 letters)
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch
repair, nucleotide-binding, DNA-binding, polymorphism,
nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens}
PDB: 2wwy_A*
Length = 591
Score = 133 bits (336), Expect = 7e-37
Identities = 34/91 (37%), Positives = 57/91 (62%), Gaps = 4/91 (4%)
Query: 1 FISSFNRANLKYEILPK----KNVLKEVISLIKAKYSGQSGIVYCLTRKECDSVAAALAQ 56
F +SFNR NL YE+ K ++ +++++ LI +Y GQSGI+YC ++K+ + V +L
Sbjct: 230 FTASFNRPNLYYEVRQKPSNTEDFIEDIVKLINGRYKGQSGIIYCFSQKDSEQVTVSLQN 289
Query: 57 ERINAISYHAGLADKLRNEVQMKWISNKVHV 87
I+A +YHA L + + V KW +N++ V
Sbjct: 290 LGIHAGAYHANLEPEDKTTVHRKWSANEIQV 320
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix,
helix-turn-helix, ATP binding, Zn(2+) binding,
hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43
c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Length = 523
Score = 110 bits (278), Expect = 5e-29
Identities = 30/87 (34%), Positives = 56/87 (64%), Gaps = 1/87 (1%)
Query: 1 FISSFNRANLKYEILPKKNVLKEVISLIKAKYSGQSGIVYCLTRKECDSVAAALAQERIN 60
ISSF+R N++Y ++ K L +++ ++ + G+SGI+YC +R + + AA L + I+
Sbjct: 204 QISSFDRPNIRYMLMEKFKPLDQLMRYVQEQ-RGKSGIIYCNSRAKVEDTAARLQSKGIS 262
Query: 61 AISYHAGLADKLRNEVQMKWISNKVHV 87
A +YHAGL + +R +VQ K+ + + +
Sbjct: 263 AAAYHAGLENNVRADVQEKFQRDDLQI 289
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 37.5 bits (86), Expect = 0.001
Identities = 20/197 (10%), Positives = 60/197 (30%), Gaps = 63/197 (31%)
Query: 1 FISSFNRANLKYEILPKKNV--LKEVISLIKAKYSGQSG---IVY--------CLTRKEC 47
+I +R ++ K NV L+ + L +A + ++ +
Sbjct: 112 YIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWV----- 166
Query: 48 DSVAAALAQERINAISYHAGLADKLRNEVQMKWISNKVHVGHWTVVSKECDSVAAALAQE 107
++ + + + ++ W++ + + C+S L E
Sbjct: 167 --ALDVCLSYKV-----------QCKMDFKIFWLN----LKN-------CNSPETVL--E 200
Query: 108 RINAISYHAGLADKLRNEVQMKWISNKVHLYNVWKIQWKRII--WIHSLVLIKPDYLPPI 165
+ + Y R++ SN + + + +R++ + L+ +
Sbjct: 201 MLQKLLYQIDPNWTSRSDH----SSNIKLRIHSIQAELRRLLKSKPYENCLL-------V 249
Query: 166 LDLRLGREDIREGETME 182
L +++ +
Sbjct: 250 LL------NVQNAKAWN 260
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 34.9 bits (79), Expect = 0.006
Identities = 13/45 (28%), Positives = 19/45 (42%), Gaps = 18/45 (40%)
Query: 17 KKNVLKEVISLIKAKYSGQSGIVYCLTRKECDSVAAALAQERINA 61
+K LK++ + +K Y+ DS A ALA I A
Sbjct: 18 EKQALKKLQASLK-LYAD-------------DS-APALA---IKA 44
Score = 25.7 bits (55), Expect = 6.7
Identities = 11/41 (26%), Positives = 15/41 (36%), Gaps = 12/41 (29%)
Query: 142 KIQWKRIIWIHSLVLIKPDYLPPILDLRLGREDIREGETME 182
K K++ SL L D P L ++ TME
Sbjct: 19 KQALKKLQ--ASLKLYADDS-APALAIK---------ATME 47
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase,
dimer, ATP-binding, helicase, hydrolase,
nucleotide-binding; 2.30A {Thermus thermophilus} PDB:
3ear_A 3eas_A
Length = 212
Score = 35.0 bits (81), Expect = 0.007
Identities = 13/60 (21%), Positives = 26/60 (43%), Gaps = 4/60 (6%)
Query: 17 KKNVLKEVISLIKAKYSGQSGIVYCLTRKECDSVAAALAQERINAISYHAGLADKLRNEV 76
+ VL +++ + S +V+ T+ E + +A L + A + H L+ R V
Sbjct: 18 RLEVLSDLLYV----ASPDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDLSQGERERV 73
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA
recognition motif, ATP-BIND helicase,
nucleotide-binding; 2.80A {Thermus thermophilus}
Length = 300
Score = 35.1 bits (81), Expect = 0.008
Identities = 12/60 (20%), Positives = 26/60 (43%), Gaps = 4/60 (6%)
Query: 17 KKNVLKEVISLIKAKYSGQSGIVYCLTRKECDSVAAALAQERINAISYHAGLADKLRNEV 76
+ VL +++ + S +V+ T+ E + +A L + A + H ++ R V
Sbjct: 15 RLEVLSDLLYV----ASPDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDMSQGERERV 70
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation,
nucleotide-binding, hydrolase, RNA-binding,
ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo
sapiens}
Length = 185
Score = 32.2 bits (74), Expect = 0.053
Identities = 15/60 (25%), Positives = 25/60 (41%), Gaps = 3/60 (5%)
Query: 17 KKNVLKEVISLIKAKYSGQSGIVYCLTRKECDSVAAALAQERINAISYHAGLADKLRNEV 76
K++ L + L+ A +V+ T+K DS+ L E S H + + R E
Sbjct: 32 KRSFLLD---LLNATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEA 88
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling,
archaea, isomeras; 2.35A {Thermotoga maritima} PDB:
3p4y_A 3p4x_A*
Length = 414
Score = 32.4 bits (74), Expect = 0.065
Identities = 7/64 (10%), Positives = 19/64 (29%), Gaps = 5/64 (7%)
Query: 11 KYEILPKKNVLKEVISLIKAKYSGQSGIVYCLTRKECDSVAAALAQERINAISYHAGLAD 70
K L E++ + +++ T +E + L + + N +
Sbjct: 234 VRISSRSKEKLVELLEIF-----RDGILIFAQTEEEGKELYEYLKRFKFNVGETWSEFEK 288
Query: 71 KLRN 74
+
Sbjct: 289 NFED 292
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein,
ATPase, RNA binding protein; 3.00A {Methanocaldococcus
jannaschii} SCOP: c.37.1.19 c.37.1.19
Length = 367
Score = 32.5 bits (75), Expect = 0.068
Identities = 11/41 (26%), Positives = 21/41 (51%)
Query: 36 SGIVYCLTRKECDSVAAALAQERINAISYHAGLADKLRNEV 76
G+V+C T+++ +A+ L A + H L+ R +V
Sbjct: 240 YGLVFCKTKRDTKELASMLRDIGFKAGAIHGDLSQSQREKV 280
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin
nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Length = 715
Score = 32.4 bits (74), Expect = 0.071
Identities = 20/113 (17%), Positives = 43/113 (38%), Gaps = 17/113 (15%)
Query: 16 PKKNVLKEVISLIKAKYS-GQSGIVYCLTRKECDSVAAALAQERINAISYHAGLADKLRN 74
K + +I+ S +V+ +RK +S A +A L++ L+
Sbjct: 233 KKVHGDDAIIAYTLDSLSKNGQVLVFRNSRKMAESTALKIANYMNFVSLDENALSEILKQ 292
Query: 75 EVQMKWISNKVHVGHWTVVSKECDSVAAALAQERINAISYH-AGLADKLRNEV 126
++ S E + + + ++ ++YH AGL+ LR+ +
Sbjct: 293 LDDIE-----------EGGSDEKELLKSLIS----KGVAYHHAGLSKALRDLI 330
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics,
structural genomic consortium, SGC, hydrolase; 2.60A
{Homo sapiens}
Length = 191
Score = 31.4 bits (72), Expect = 0.090
Identities = 9/60 (15%), Positives = 23/60 (38%), Gaps = 5/60 (8%)
Query: 17 KKNVLKEVISLIKAKYSGQSGIVYCLTRKECDSVAAALAQERINAISYHAGLADKLRNEV 76
K L E + +++ + + D++ L + + A++ H G + R +
Sbjct: 42 KMVYLLECLQKTPPPV-----LIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKA 96
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC,
structural GE consortium, hydrolase; HET: AMP; 2.20A
{Homo sapiens}
Length = 417
Score = 31.7 bits (73), Expect = 0.11
Identities = 13/49 (26%), Positives = 21/49 (42%), Gaps = 3/49 (6%)
Query: 17 KKNVLKEVISLIKAKYSGQSGIVYCLTRKECDSVAAALAQERINAISYH 65
K++ L + L+ A +V+ T+K DS+ L E S H
Sbjct: 262 KRSFLLD---LLNATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIH 307
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural
genomics, structural consortium, SGC, alternative
initiation, ATP-binding, devel protein; 2.80A {Homo
sapiens}
Length = 175
Score = 30.3 bits (69), Expect = 0.20
Identities = 12/60 (20%), Positives = 22/60 (36%), Gaps = 4/60 (6%)
Query: 17 KKNVLKEVISLIKAKYSGQSGIVYCLTRKECDSVAAALAQERINAISYHAGLADKLRNEV 76
K L + I GQ+ I++C TR+ + + Q+ L + R +
Sbjct: 21 KYQALCNIYGSIT---IGQA-IIFCQTRRNAKWLTVEMIQDGHQVSLLSGELTVEQRASI 76
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase;
1.95A {Bacillus subtilis}
Length = 163
Score = 30.2 bits (69), Expect = 0.25
Identities = 10/45 (22%), Positives = 19/45 (42%), Gaps = 1/45 (2%)
Query: 35 QSGIVYCLTRKECDSVAAALAQERINAISYHAGLADKLRNEVQMK 79
S I++C T++ + + L H G+ + R +V M
Sbjct: 36 DSCIIFCRTKEHVNQLTDELDDLGYPCDKIHGGMIQEDRFDV-MN 79
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation
termination, binding, hydrolase, membrane, mRNA
transport; 2.80A {Schizosaccharomyces pombe}
Length = 508
Score = 30.6 bits (70), Expect = 0.29
Identities = 11/66 (16%), Positives = 26/66 (39%), Gaps = 10/66 (15%)
Query: 11 KYEILPKKNVLKEVISLIKAKYSGQSGIVYCLTRKECDSVAAALAQERINAISYHAGLAD 70
KY +L + ++++ GQS I++C + + +A + + L
Sbjct: 344 KYNVL--VELY-GLLTI------GQS-IIFCKKKDTAEEIARRMTADGHTVACLTGNLEG 393
Query: 71 KLRNEV 76
R+ +
Sbjct: 394 AQRDAI 399
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase;
RECA-like fold, PRE-mRNA processing protein; 1.90A
{Homo sapiens} SCOP: c.37.1.19
Length = 172
Score = 29.9 bits (68), Expect = 0.32
Identities = 11/60 (18%), Positives = 29/60 (48%), Gaps = 4/60 (6%)
Query: 17 KKNVLKEVISLIKAKYSGQSGIVYCLTRKECDSVAAALAQERINAISYHAGLADKLRNEV 76
K L +++ +++ Q +++ + + C ++A L ++ AI+ H G+ + R
Sbjct: 18 KNRKLFDLLDVLEF---NQV-VIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSR 73
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation,
rRNA processing, mRNA splicing, mRNA transport; HET:
ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB:
2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B
2zu6_A
Length = 410
Score = 29.8 bits (68), Expect = 0.45
Identities = 7/40 (17%), Positives = 18/40 (45%)
Query: 37 GIVYCLTRKECDSVAAALAQERINAISYHAGLADKLRNEV 76
+++C T+++ D + + + S H + K R +
Sbjct: 279 AVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESI 318
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding,
RNA binding protein; 2.10A {Saccharomyces cerevisiae}
SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Length = 400
Score = 29.9 bits (68), Expect = 0.47
Identities = 8/39 (20%), Positives = 18/39 (46%)
Query: 38 IVYCLTRKECDSVAAALAQERINAISYHAGLADKLRNEV 76
I++C + + +A + + HA + + RN+V
Sbjct: 262 IIFCNSTNRVELLAKKITDLGYSCYYSHARMKQQERNKV 300
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA
compl protease/ntpase/helicase, hydrolase; 1.95A
{Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4a92_A*
1cu1_A 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A*
3kqh_A 3kqk_A 8ohm_A 2f55_A 1jr6_A 1onb_A
Length = 666
Score = 30.0 bits (67), Expect = 0.49
Identities = 13/36 (36%), Positives = 24/36 (66%)
Query: 36 SGIVYCLTRKECDSVAAALAQERINAISYHAGLADK 71
+++C ++K+CD +AA L+ INA++Y+ GL
Sbjct: 398 RHLIFCHSKKKCDELAAKLSGLGINAVAYYRGLDVS 433
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene
regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19
c.37.1.19 PDB: 1xtj_A* 1xtk_A
Length = 391
Score = 29.9 bits (68), Expect = 0.52
Identities = 8/39 (20%), Positives = 20/39 (51%)
Query: 38 IVYCLTRKECDSVAAALAQERINAISYHAGLADKLRNEV 76
+++ + + C ++A L ++ AI+ H G+ + R
Sbjct: 254 VIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSR 292
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex,
ATPase, riken structural genomics/proteomics initiative,
RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Length = 434
Score = 29.4 bits (67), Expect = 0.63
Identities = 12/49 (24%), Positives = 24/49 (48%), Gaps = 5/49 (10%)
Query: 17 KKNVLKEVISLIKAKYSGQSGIVYCLTRKECDSVAAALAQERINAISYH 65
K++ L E++S IV+ T++ D +A+ L+++ S H
Sbjct: 288 KRSKLIEILSEQADGT-----IVFVETKRGADFLASFLSEKEFPTTSIH 331
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding,
hydrolase, nucleotide- binding; 2.00A {Pyrococcus
furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Length = 720
Score = 29.4 bits (66), Expect = 0.68
Identities = 15/118 (12%), Positives = 40/118 (33%), Gaps = 20/118 (16%)
Query: 18 KNVLKEVISLIKAKYSGQSGIVYCLTRKECDSVAAALAQERINAISYHAGLADKLRNEVQ 77
+ + V I+ + +++ R++ + VA L+++ + ++ A +
Sbjct: 224 SSWEELVYDAIR---KKKGALIFVNMRRKAERVALELSKKVKSLLTKPEIRALNELADSL 280
Query: 78 MKWISNKVHVGHWTVVSKECDSVAAALAQERINAISYHAGLADKLRNEVQMKWISNKV 135
+ +N+ + A +HAGL R V+ + +
Sbjct: 281 EENPTNEKL--------AKAIRGGVAF---------HHAGLGRDERVLVEENFRKGII 321
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease
activity A; hydrolase inhibitor-hydrolase complex, DEAD
box RNA helicase; 2.90A {Escherichia coli}
Length = 170
Score = 28.7 bits (65), Expect = 0.69
Identities = 12/53 (22%), Positives = 20/53 (37%)
Query: 35 QSGIVYCLTRKECDSVAAALAQERINAISYHAGLADKLRNEVQMKWISNKVHV 87
IV+ R+ +A L + IN + RNE + +V+V
Sbjct: 31 TRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNV 83
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein,
translation; 1.75A {Saccharomyces cerevisiae} SCOP:
c.37.1.19
Length = 165
Score = 28.7 bits (65), Expect = 0.76
Identities = 7/43 (16%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Query: 34 GQSGIVYCLTRKECDSVAAALAQERINAISYHAGLADKLRNEV 76
Q+ +++C TR++ + + L ++ + ++ L + R+ +
Sbjct: 31 TQA-VIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTI 72
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis,
cell cycle, nucleus, phosph RNA-binding, ATP-binding,
helicase, hydrolase; 3.50A {Homo sapiens}
Length = 414
Score = 29.1 bits (66), Expect = 0.80
Identities = 6/39 (15%), Positives = 17/39 (43%)
Query: 38 IVYCLTRKECDSVAAALAQERINAISYHAGLADKLRNEV 76
+++ TR++ D + + + H + K R+ +
Sbjct: 284 VIFINTRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVI 322
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein,
translation; 2.50A {Saccharomyces cerevisiae} SCOP:
c.37.1.19 PDB: 2vso_A* 2vsx_A*
Length = 394
Score = 29.0 bits (66), Expect = 0.85
Identities = 6/39 (15%), Positives = 21/39 (53%)
Query: 38 IVYCLTRKECDSVAAALAQERINAISYHAGLADKLRNEV 76
+++C TR++ + + L ++ + ++ L + R+ +
Sbjct: 263 VIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTI 301
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase,
mRNA-export, nuclear pore, hydrolase-RNA complex; HET:
ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A*
3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A
3pev_A* 3peu_A*
Length = 395
Score = 27.9 bits (63), Expect = 2.1
Identities = 9/41 (21%), Positives = 17/41 (41%)
Query: 36 SGIVYCLTRKECDSVAAALAQERINAISYHAGLADKLRNEV 76
S I++ T+K + + L E H L + R+ +
Sbjct: 245 SSIIFVATKKTANVLYGKLKSEGHEVSILHGDLQTQERDRL 285
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA
dependent ATPase, mRNA export, nucleocytoplasmic
transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens}
PDB: 3ews_A* 3g0h_A* 3fhc_B
Length = 412
Score = 27.9 bits (63), Expect = 2.2
Identities = 11/43 (25%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
Query: 34 GQSGIVYCLTRKECDSVAAALAQERINAISYHAGLADKLRNEV 76
Q+ +++C TRK +AA L++E + + R V
Sbjct: 267 AQA-MIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAV 308
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore
complex, nucleocytoplasmic trans mRNA export, protein
interaction, beta-propeller; HET: ADP; 3.19A {Homo
sapiens}
Length = 479
Score = 27.7 bits (62), Expect = 2.6
Identities = 11/43 (25%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
Query: 34 GQSGIVYCLTRKECDSVAAALAQERINAISYHAGLADKLRNEV 76
Q+ +++C TRK +AA L++E + + R V
Sbjct: 334 AQA-MIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAV 375
>1z9v_A Conserved hypothetical protein MTH0776; solution structure,
archaeabacterium, unknown function; NMR
{Methanothermobacter thermautotrophicusorganism_taxid}
Length = 121
Score = 26.6 bits (58), Expect = 2.7
Identities = 7/32 (21%), Positives = 18/32 (56%)
Query: 2 ISSFNRANLKYEILPKKNVLKEVISLIKAKYS 33
+ ++ + + +YEI K+ +E ++I+ K
Sbjct: 25 LETYLQQSGEYEIHMKRAGFRECAAMIEKKAR 56
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal
helicase, DNA repair,, DNA binding protein/DNA complex;
3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2
c.37.1.19 c.37.1.19 PDB: 2p6u_A
Length = 702
Score = 25.9 bits (57), Expect = 9.3
Identities = 7/42 (16%), Positives = 18/42 (42%), Gaps = 2/42 (4%)
Query: 15 LPKKNVLKEVISLIKAKYSGQSGIVYCLTRKECDSVAAALAQ 56
++ +E++ A+ +V+ TR+ + A L+
Sbjct: 225 TSRRVKFEELVEECVAE--NGGVLVFESTRRGAEKTAVKLSA 264
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.134 0.404
Gapped
Lambda K H
0.267 0.0802 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,882,539
Number of extensions: 161980
Number of successful extensions: 341
Number of sequences better than 10.0: 1
Number of HSP's gapped: 339
Number of HSP's successfully gapped: 37
Length of query: 184
Length of database: 6,701,793
Length adjustment: 88
Effective length of query: 96
Effective length of database: 4,244,745
Effective search space: 407495520
Effective search space used: 407495520
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (24.4 bits)