RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy437
(184 letters)
>d1oywa3 c.37.1.19 (A:207-406) RecQ helicase domain {Escherichia
coli [TaxId: 562]}
Length = 200
Score = 60.8 bits (146), Expect = 2e-12
Identities = 30/97 (30%), Positives = 57/97 (58%), Gaps = 1/97 (1%)
Query: 4 SFNRANLKYEILPKKNVLKEVISLIKAKYSGQSGIVYCLTRKECDSVAAALAQERINAIS 63
SF+R N++Y ++ K L +++ ++ + G+SGI+YC +R + + AA L + I+A +
Sbjct: 1 SFDRPNIRYMLMEKFKPLDQLMRYVQ-EQRGKSGIIYCNSRAKVEDTAARLQSKGISAAA 59
Query: 64 YHAGLADKLRNEVQMKWISNKVHVGHWTVVSKECDSV 100
YHAGL + +R +VQ K+ + + + TV +
Sbjct: 60 YHAGLENNVRADVQEKFQRDDLQIVVATVAFGMGINK 96
>d1jr6a_ c.37.1.14 (A:) HCV helicase domain {Human hepatitis C
virus (HCV), different isolates [TaxId: 11103]}
Length = 138
Score = 56.6 bits (136), Expect = 2e-11
Identities = 17/81 (20%), Positives = 33/81 (40%), Gaps = 1/81 (1%)
Query: 4 SFNRANLKYEILPKKNVLKEVISLIK-AKYSGQSGIVYCLTRKECDSVAAALAQERINAI 62
+ N++ L + I G +++C ++K+CD +AA L INA+
Sbjct: 4 TVPHPNIEEVALSTTGEIPFYGKAIPLEVIKGGRHLIFCHSKKKCDELAAKLVALGINAV 63
Query: 63 SYHAGLADKLRNEVQMKWISN 83
+Y+ GL + +
Sbjct: 64 AYYRGLDVSVIPTNGDVVVVA 84
>d1a1va2 c.37.1.14 (A:326-624) HCV helicase domain {Human
hepatitis C virus (HCV), different isolates [TaxId:
11103]}
Length = 299
Score = 53.0 bits (127), Expect = 2e-09
Identities = 17/76 (22%), Positives = 32/76 (42%), Gaps = 1/76 (1%)
Query: 7 RANLKYEILPKKNVLKEVISLIK-AKYSGQSGIVYCLTRKECDSVAAALAQERINAISYH 65
N++ L + I G +++C ++K+CD +AA L INA++Y+
Sbjct: 8 HPNIEEVALSTTGEIPFYGKAIPLEVIKGGRHLIFCHSKKKCDELAAKLVALGINAVAYY 67
Query: 66 AGLADKLRNEVQMKWI 81
GL + +
Sbjct: 68 RGLDVSVIPTSGDVVV 83
>d1gkub2 c.37.1.16 (B:251-498) Helicase-like "domain" of reverse
gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Length = 248
Score = 41.7 bits (97), Expect = 2e-05
Identities = 10/76 (13%), Positives = 30/76 (39%), Gaps = 8/76 (10%)
Query: 12 YEILPKKNVLKEVISLIKAKYSGQSGIVYCLTRKECDSVAAALAQERINAISYHAGLADK 71
++ + + S+++ G GI+Y T +E + + +L + + G+
Sbjct: 5 EDVAVNDESISTLSSILEKL--GTGGIIYARTGEEAEEIYESLKNK------FRIGIVTA 56
Query: 72 LRNEVQMKWISNKVHV 87
+ K++ ++
Sbjct: 57 TKKGDYEKFVEGEIDH 72
>d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus
type 2 [TaxId: 11060]}
Length = 305
Score = 33.4 bits (75), Expect = 0.010
Identities = 7/70 (10%), Positives = 15/70 (21%)
Query: 22 KEVISLIKAKYSGQSGIVYCLTRKECDSVAAALAQERINAISYHAGLADKLRNEVQMKWI 81
+ + + K + +AA L + I D + +
Sbjct: 166 SWNSGHEWVTDFKGKTVWFVPSIKAGNDIAACLRKNGKKVIQLSRKTFDSEYIKTRTNDW 225
Query: 82 SNKVHVGHWT 91
V
Sbjct: 226 DFVVTTDISE 235
>d2p6ra4 c.37.1.19 (A:203-403) Hel308 helicase {Archaeoglobus
fulgidus [TaxId: 2234]}
Length = 201
Score = 30.7 bits (68), Expect = 0.080
Identities = 6/59 (10%), Positives = 18/59 (30%), Gaps = 3/59 (5%)
Query: 4 SFNRANLKYEILPKKNVLKEVISLIKAKYSGQSGIVYCLTRKECDSVAAALAQERINAI 62
+ + + + + V + +V+ TR+ + A L+ +
Sbjct: 13 TLELFDGAFSTSRRVKFEELVEECVA---ENGGVLVFESTRRGAEKTAVKLSAITAKYV 68
>d1wp9a2 c.37.1.19 (A:201-486) putative ATP-dependent RNA helicase
PF2015 {Pyrococcus furiosus [TaxId: 2261]}
Length = 286
Score = 30.6 bits (68), Expect = 0.082
Identities = 16/89 (17%), Positives = 33/89 (37%), Gaps = 8/89 (8%)
Query: 16 PKKNVLKEVISLIKAKYSGQSGIVYCLTRKECDSVAAALAQERINAISYHAGLADKLR-- 73
PK + LKE+I + IV+ R+ + L ++ I A + + +
Sbjct: 143 PKMDKLKEIIREQLQRKQNSKIIVFTNYRETAKKIVNELVKDGIKAKRFVGQASKENDRG 202
Query: 74 ------NEVQMKWISNKVHVGHWTVVSKE 96
+ ++ + +V T V +E
Sbjct: 203 LSQREQKLILDEFARGEFNVLVATSVGEE 231
>d1fuka_ c.37.1.19 (A:) Initiation factor 4a {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 162
Score = 27.6 bits (60), Expect = 0.58
Identities = 10/75 (13%), Positives = 33/75 (44%)
Query: 12 YEILPKKNVLKEVISLIKAKYSGQSGIVYCLTRKECDSVAAALAQERINAISYHAGLADK 71
Y + ++ E ++ + S +++C TR++ + + L ++ + ++ L +
Sbjct: 5 YVNVEEEEYKYECLTDLYDSISVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQ 64
Query: 72 LRNEVQMKWISNKVH 86
R+ + ++ S
Sbjct: 65 ERDTIMKEFRSGSSR 79
>d1hv8a2 c.37.1.19 (A:211-365) Putative DEAD box RNA helicase
{Archaeon Methanococcus jannaschii [TaxId: 2190]}
Length = 155
Score = 24.1 bits (51), Expect = 9.5
Identities = 21/95 (22%), Positives = 41/95 (43%), Gaps = 4/95 (4%)
Query: 8 ANLK--YEILPKKNVLKEVISLIKAKYSGQSGIVYCLTRKECDSVAAALAQERINAISYH 65
AN++ Y + + + + L+K K G+V+C T+++ +A+ L A + H
Sbjct: 2 ANIEQSYVEVNENERFEALCRLLKNK--EFYGLVFCKTKRDTKELASMLRDIGFKAGAIH 59
Query: 66 AGLADKLRNEVQMKWISNKVHVGHWTVVSKECDSV 100
L+ R +V + K+ + T V V
Sbjct: 60 GDLSQSQREKVIRLFKQKKIRILIATDVMSRGIDV 94
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.320 0.134 0.404
Gapped
Lambda K H
0.267 0.0455 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 700,225
Number of extensions: 30441
Number of successful extensions: 98
Number of sequences better than 10.0: 1
Number of HSP's gapped: 97
Number of HSP's successfully gapped: 12
Length of query: 184
Length of database: 2,407,596
Length adjustment: 80
Effective length of query: 104
Effective length of database: 1,309,196
Effective search space: 136156384
Effective search space used: 136156384
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.7 bits)