BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy4370
(191 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|F1RCR6|TRIPC_DANRE E3 ubiquitin-protein ligase TRIP12 OS=Danio rerio GN=trip12 PE=2 SV=1
Length = 2026
Score = 95.9 bits (237), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 43/78 (55%), Positives = 54/78 (69%)
Query: 112 SWDMKTLMECCRIDHGYNHNSKAIKYLFHVLSCYSSPEQRDFLQFVTGSPRLPVGAKTKC 171
SWD+KTLMECCR DHGY H+S+A+++LF VLS + + +QR FLQFVTGSPRLPVG
Sbjct: 1907 SWDVKTLMECCRPDHGYTHDSRAVRFLFEVLSSFDAEQQRLFLQFVTGSPRLPVGGFRSL 1966
Query: 172 QPKAITLGLIERLTKNAD 189
P + T+N D
Sbjct: 1967 NPPLTIVRKTFESTENPD 1984
Score = 49.7 bits (117), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 38/70 (54%)
Query: 39 RGHNQGKSVSGKSSSKRKADEIWSDGLVPLSRSPLDPYLSDTLPPSVTITDACLPVLTLL 98
RG Q + +K DE+W +G+ P +PL+ YL P +T D + V+ LL
Sbjct: 1450 RGRAQTAPTKTSPRNAKKQDELWHEGVCPSVANPLETYLICDPPEGITFDDPSMEVILLL 1509
Query: 99 RVLNAVNRNW 108
RVL++++R W
Sbjct: 1510 RVLHSISRYW 1519
>sp|B4F6W9|TRIPC_XENTR E3 ubiquitin-protein ligase TRIP12 OS=Xenopus tropicalis GN=trip12
PE=2 SV=1
Length = 2056
Score = 95.1 bits (235), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 42/77 (54%), Positives = 52/77 (67%)
Query: 113 WDMKTLMECCRIDHGYNHNSKAIKYLFHVLSCYSSPEQRDFLQFVTGSPRLPVGAKTKCQ 172
WD+KTLMECCR DHGY H+S+A+K+LF +LS + +QR FLQFVTGSPRLPVG
Sbjct: 1938 WDVKTLMECCRPDHGYTHDSRAVKFLFEILSSFDKEQQRLFLQFVTGSPRLPVGGFRSLN 1997
Query: 173 PKAITLGLIERLTKNAD 189
P + T+N D
Sbjct: 1998 PPLTIVRKTFEATENPD 2014
Score = 48.5 bits (114), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 39/72 (54%), Gaps = 2/72 (2%)
Query: 39 RGHNQGKSVSGKSSSKRKADEIW--SDGLVPLSRSPLDPYLSDTLPPSVTITDACLPVLT 96
RG Q + +K DE+W DG+ P +PL+ YL P ++T D L V+
Sbjct: 1478 RGRAQTAPTKTSPRNSKKHDELWHGKDGVCPRILNPLEVYLISGPPENITFDDPSLDVVI 1537
Query: 97 LLRVLNAVNRNW 108
LLRVL+A++R W
Sbjct: 1538 LLRVLHAISRYW 1549
>sp|E1B7Q7|TRIPC_BOVIN E3 ubiquitin-protein ligase TRIP12 OS=Bos taurus GN=TRIP12 PE=2 SV=2
Length = 1992
Score = 94.7 bits (234), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 42/80 (52%), Positives = 53/80 (66%)
Query: 110 GSSWDMKTLMECCRIDHGYNHNSKAIKYLFHVLSCYSSPEQRDFLQFVTGSPRLPVGAKT 169
+WD KTLMECCR DHGY H+S+A+K+LF +LS + + +QR FLQFVTGSPRLPVG
Sbjct: 1871 ADTWDAKTLMECCRPDHGYTHDSRAVKFLFEILSSFDNEQQRLFLQFVTGSPRLPVGGFR 1930
Query: 170 KCQPKAITLGLIERLTKNAD 189
P + T+N D
Sbjct: 1931 SLNPPLTIVRKTFESTENPD 1950
Score = 58.2 bits (139), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 29/70 (41%), Positives = 41/70 (58%)
Query: 39 RGHNQGKSVSGKSSSKRKADEIWSDGLVPLSRSPLDPYLSDTLPPSVTITDACLPVLTLL 98
RG Q + +K DE+W+DG+ P +PL+ YL T P ++T D L V+ LL
Sbjct: 1416 RGRAQTAPTKTSPRNAKKHDELWNDGVCPSVSNPLEVYLIPTAPENITFEDPSLDVILLL 1475
Query: 99 RVLNAVNRNW 108
RVL+AV+R W
Sbjct: 1476 RVLHAVSRYW 1485
>sp|F1LP64|TRIPC_RAT E3 ubiquitin-protein ligase TRIP12 OS=Rattus norvegicus GN=Trip12
PE=2 SV=1
Length = 2025
Score = 94.7 bits (234), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 42/80 (52%), Positives = 53/80 (66%)
Query: 110 GSSWDMKTLMECCRIDHGYNHNSKAIKYLFHVLSCYSSPEQRDFLQFVTGSPRLPVGAKT 169
+WD KTLMECCR DHGY H+S+A+K+LF +LS + + +QR FLQFVTGSPRLPVG
Sbjct: 1904 ADTWDAKTLMECCRPDHGYTHDSRAVKFLFEILSSFDNEQQRLFLQFVTGSPRLPVGGFR 1963
Query: 170 KCQPKAITLGLIERLTKNAD 189
P + T+N D
Sbjct: 1964 SLNPPLTIVRKTFESTENPD 1983
Score = 55.8 bits (133), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/70 (40%), Positives = 40/70 (57%)
Query: 39 RGHNQGKSVSGKSSSKRKADEIWSDGLVPLSRSPLDPYLSDTLPPSVTITDACLPVLTLL 98
RG Q + +K DE+W DG+ P +PL+ YL T P ++T D L V+ LL
Sbjct: 1449 RGRAQTAPTKTSPRNAKKHDELWHDGVCPSVANPLEVYLIPTPPENITFEDPSLDVILLL 1508
Query: 99 RVLNAVNRNW 108
RVL+A++R W
Sbjct: 1509 RVLHAISRYW 1518
>sp|Q14669|TRIPC_HUMAN E3 ubiquitin-protein ligase TRIP12 OS=Homo sapiens GN=TRIP12 PE=1
SV=1
Length = 1992
Score = 94.7 bits (234), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 42/80 (52%), Positives = 53/80 (66%)
Query: 110 GSSWDMKTLMECCRIDHGYNHNSKAIKYLFHVLSCYSSPEQRDFLQFVTGSPRLPVGAKT 169
+WD KTLMECCR DHGY H+S+A+K+LF +LS + + +QR FLQFVTGSPRLPVG
Sbjct: 1871 ADTWDAKTLMECCRPDHGYTHDSRAVKFLFEILSSFDNEQQRLFLQFVTGSPRLPVGGFR 1930
Query: 170 KCQPKAITLGLIERLTKNAD 189
P + T+N D
Sbjct: 1931 SLNPPLTIVRKTFESTENPD 1950
Score = 55.8 bits (133), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/70 (40%), Positives = 40/70 (57%)
Query: 39 RGHNQGKSVSGKSSSKRKADEIWSDGLVPLSRSPLDPYLSDTLPPSVTITDACLPVLTLL 98
RG Q + +K DE+W DG+ P +PL+ YL T P ++T D L V+ LL
Sbjct: 1416 RGRAQTAPTKTSPRNAKKHDELWHDGVCPSVSNPLEVYLIPTPPENITFEDPSLDVILLL 1475
Query: 99 RVLNAVNRNW 108
RVL+A++R W
Sbjct: 1476 RVLHAISRYW 1485
>sp|G5E870|TRIPC_MOUSE E3 ubiquitin-protein ligase TRIP12 OS=Mus musculus GN=Trip12 PE=1
SV=1
Length = 2025
Score = 94.7 bits (234), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 42/80 (52%), Positives = 53/80 (66%)
Query: 110 GSSWDMKTLMECCRIDHGYNHNSKAIKYLFHVLSCYSSPEQRDFLQFVTGSPRLPVGAKT 169
+WD KTLMECCR DHGY H+S+A+K+LF +LS + + +QR FLQFVTGSPRLPVG
Sbjct: 1904 ADTWDAKTLMECCRPDHGYTHDSRAVKFLFEILSSFDNEQQRLFLQFVTGSPRLPVGGFR 1963
Query: 170 KCQPKAITLGLIERLTKNAD 189
P + T+N D
Sbjct: 1964 SLNPPLTIVRKTFESTENPD 1983
Score = 55.8 bits (133), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/70 (40%), Positives = 40/70 (57%)
Query: 39 RGHNQGKSVSGKSSSKRKADEIWSDGLVPLSRSPLDPYLSDTLPPSVTITDACLPVLTLL 98
RG Q + +K DE+W DG+ P +PL+ YL T P ++T D L V+ LL
Sbjct: 1449 RGRAQTAPTKTSPRNAKKHDELWHDGVCPSVANPLEVYLIPTPPENITFEDPSLDVILLL 1508
Query: 99 RVLNAVNRNW 108
RVL+A++R W
Sbjct: 1509 RVLHAISRYW 1518
>sp|Q6WWW4|UPL3_ARATH E3 ubiquitin-protein ligase UPL3 OS=Arabidopsis thaliana GN=UPL3 PE=1
SV=1
Length = 1888
Score = 63.5 bits (153), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 28/62 (45%), Positives = 38/62 (61%)
Query: 113 WDMKTLMECCRIDHGYNHNSKAIKYLFHVLSCYSSPEQRDFLQFVTGSPRLPVGAKTKCQ 172
W+++TL E + DHGYN S AI L ++ ++ +QR F QFVTG+PRLP G
Sbjct: 1760 WEVETLAEHIKFDHGYNAKSPAIINLLEIMGELTADQQRAFCQFVTGAPRLPPGGLAVLN 1819
Query: 173 PK 174
PK
Sbjct: 1820 PK 1821
>sp|Q9LYZ7|UPL4_ARATH E3 ubiquitin-protein ligase UPL4 OS=Arabidopsis thaliana GN=UPL4 PE=1
SV=1
Length = 1502
Score = 60.8 bits (146), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 26/62 (41%), Positives = 37/62 (59%)
Query: 113 WDMKTLMECCRIDHGYNHNSKAIKYLFHVLSCYSSPEQRDFLQFVTGSPRLPVGAKTKCQ 172
+ M +++ + DHGY +S ++YL +L + +QR FLQFVTGSPRLP G
Sbjct: 1386 FSMNEVLDHIKFDHGYTSSSPPVEYLLQILHEFDREQQRAFLQFVTGSPRLPHGGLASLS 1445
Query: 173 PK 174
PK
Sbjct: 1446 PK 1447
>sp|Q10435|YDE1_SCHPO Probable ubiquitin fusion degradation protein C12B10.01c
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=SPAC12B10.01c PE=3 SV=2
Length = 1647
Score = 59.3 bits (142), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 41/74 (55%), Gaps = 3/74 (4%)
Query: 113 WDMKTLMECCRIDHGYNHNSKAIKYLFHVLSCYSSPEQRDFLQFVTGSPRLPVGAKTKCQ 172
W TLM+ DHGY S I+ L ++S + EQRDFLQF+TGS +LP+G
Sbjct: 1529 WSYATLMKSIVADHGYTMESPTIQRLLTLMSQMNFQEQRDFLQFITGSRKLPIGGFAGLN 1588
Query: 173 PKAITLGLIERLTK 186
P L ++ RL +
Sbjct: 1589 PP---LTVVRRLNE 1599
>sp|P33202|UFD4_YEAST Ubiquitin fusion degradation protein 4 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=UFD4 PE=1 SV=1
Length = 1483
Score = 57.4 bits (137), Expect = 5e-08, Method: Composition-based stats.
Identities = 25/62 (40%), Positives = 34/62 (54%)
Query: 113 WDMKTLMECCRIDHGYNHNSKAIKYLFHVLSCYSSPEQRDFLQFVTGSPRLPVGAKTKCQ 172
W M TL +HGY +S I ++S + E+R FLQF+TGSP+LP+G
Sbjct: 1365 WSMATLYTNLNAEHGYTMDSSIIHDFISIISAFGKHERRLFLQFLTGSPKLPIGGFKSLN 1424
Query: 173 PK 174
PK
Sbjct: 1425 PK 1426
>sp|Q05086|UBE3A_HUMAN Ubiquitin-protein ligase E3A OS=Homo sapiens GN=UBE3A PE=1 SV=4
Length = 875
Score = 45.8 bits (107), Expect = 2e-04, Method: Composition-based stats.
Identities = 21/62 (33%), Positives = 33/62 (53%)
Query: 109 GGSSWDMKTLMECCRIDHGYNHNSKAIKYLFHVLSCYSSPEQRDFLQFVTGSPRLPVGAK 168
G + D + L E D GY +S I+ + ++ ++ ++R FLQF TG+ R PVG
Sbjct: 761 GSRNLDFQALEETTEYDGGYTRDSVLIREFWEIVHSFTDEQKRLFLQFTTGTDRAPVGGL 820
Query: 169 TK 170
K
Sbjct: 821 GK 822
>sp|Q757T0|HUL4_ASHGO Probable E3 ubiquitin-protein ligase HUL4 OS=Ashbya gossypii
(strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL
Y-1056) GN=HUL4 PE=3 SV=1
Length = 839
Score = 43.5 bits (101), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 31/58 (53%)
Query: 112 SWDMKTLMECCRIDHGYNHNSKAIKYLFHVLSCYSSPEQRDFLQFVTGSPRLPVGAKT 169
S D+ L R G++ NS +++ + +LS P+QR L FVTGS R+P T
Sbjct: 728 SLDVSMLRSVTRYQGGFDDNSPVVQWFWEILSEMEYPQQRKLLHFVTGSDRVPATGVT 785
>sp|O08759|UBE3A_MOUSE Ubiquitin-protein ligase E3A OS=Mus musculus GN=Ube3a PE=2 SV=1
Length = 885
Score = 42.7 bits (99), Expect = 0.001, Method: Composition-based stats.
Identities = 20/62 (32%), Positives = 31/62 (50%)
Query: 109 GGSSWDMKTLMECCRIDHGYNHNSKAIKYLFHVLSCYSSPEQRDFLQFVTGSPRLPVGAK 168
G + D + L E D GY S I+ + ++ ++ ++R FL F TG+ R PVG
Sbjct: 771 GSRNLDFQALEETTEYDGGYTRESVVIREFWEIVHSFTDEQKRLFLLFTTGTDRAPVGGL 830
Query: 169 TK 170
K
Sbjct: 831 GK 832
>sp|P40985|HUL4_YEAST Probable E3 ubiquitin-protein ligase HUL4 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=HUL4 PE=1
SV=2
Length = 892
Score = 39.7 bits (91), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 44/200 (22%), Positives = 87/200 (43%), Gaps = 22/200 (11%)
Query: 2 PLTWEVYEE-WPFSRKHMSK--QRVMSPFKPGLSLLWACYRGHNQGKSVSGKSSSKRKAD 58
PL++E Y E +P + +++ K F+ SL + +N KSS +
Sbjct: 648 PLSFEDYSELFPETSRNLIKMLNYTEDNFEDVFSLTFETTYRNNNWILNDSKSSKEYVTV 707
Query: 59 EIWSDGL-VPLSRSP--------LDPYLSDTLPPS----VTITDACLPVLTLLRVLNA-- 103
E+ +G VP+++S ++ YL ++ P V+ +++ N+
Sbjct: 708 ELCENGRNVPITQSNKHEFVMKWVEFYLEKSIEPQYNKFVSGFKRVFAECNSIKLFNSEE 767
Query: 104 ----VNRNWGGSSWDMKTLMECCRIDHGYNHNSKAIKYLFHVLSCYSSPEQRDFLQFVTG 159
V + + +D K+L + G++ +S+A+ + + ++ + P Q+ LQFVT
Sbjct: 768 LERLVCGDEEQTKFDFKSLRSVTKYVGGFSDDSRAVCWFWEIIESWDYPLQKKLLQFVTA 827
Query: 160 SPRLPVGAKTKCQPKAITLG 179
S R+P + K LG
Sbjct: 828 SDRIPATGISTIPFKISLLG 847
>sp|Q5U5R9|HECD2_HUMAN Probable E3 ubiquitin-protein ligase HECTD2 OS=Homo sapiens
GN=HECTD2 PE=2 SV=2
Length = 776
Score = 37.7 bits (86), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 27/59 (45%), Gaps = 1/59 (1%)
Query: 109 GGSSWDMKTLMECCRIDHGYNHNSKAIKYLFHVLSCYSSPEQRDFLQFVTGSPRLPVGA 167
G DM L + D GY IKY + V+ + Q+ L F TGS R+PVG
Sbjct: 663 GSPDLDMHALQRSTQYD-GYAKTDLTIKYFWDVVLGFPLDLQKKLLHFTTGSDRVPVGG 720
>sp|Q5RD78|HECD2_PONAB Probable E3 ubiquitin-protein ligase HECTD2 OS=Pongo abelii
GN=HECTD2 PE=2 SV=1
Length = 776
Score = 37.7 bits (86), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 27/59 (45%), Gaps = 1/59 (1%)
Query: 109 GGSSWDMKTLMECCRIDHGYNHNSKAIKYLFHVLSCYSSPEQRDFLQFVTGSPRLPVGA 167
G DM L + D GY IKY + V+ + Q+ L F TGS R+PVG
Sbjct: 663 GSPDLDMHALQRSTQYD-GYAKTDLTIKYFWDVVLGFPLDLQKKLLHFTTGSDRVPVGG 720
>sp|Q9ULT8|HECD1_HUMAN E3 ubiquitin-protein ligase HECTD1 OS=Homo sapiens GN=HECTD1 PE=1
SV=3
Length = 2610
Score = 37.4 bits (85), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 27/63 (42%)
Query: 112 SWDMKTLMECCRIDHGYNHNSKAIKYLFHVLSCYSSPEQRDFLQFVTGSPRLPVGAKTKC 171
SW + ++ GY +S VL SS E++ FLQF TG LP G
Sbjct: 2497 SWAAEDIINYTEPKLGYTRDSPGFLRFVRVLCGMSSDERKAFLQFTTGCSTLPPGGLANL 2556
Query: 172 QPK 174
P+
Sbjct: 2557 HPR 2559
>sp|Q69ZR2|HECD1_MOUSE E3 ubiquitin-protein ligase HECTD1 OS=Mus musculus GN=Hectd1 PE=1
SV=2
Length = 2618
Score = 37.4 bits (85), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 27/63 (42%)
Query: 112 SWDMKTLMECCRIDHGYNHNSKAIKYLFHVLSCYSSPEQRDFLQFVTGSPRLPVGAKTKC 171
SW + ++ GY +S VL SS E++ FLQF TG LP G
Sbjct: 2505 SWAAEDIINYTEPKLGYTRDSPGFLRFVRVLCGMSSDERKAFLQFTTGCSTLPPGGLANL 2564
Query: 172 QPK 174
P+
Sbjct: 2565 HPR 2567
>sp|Q8CDU6|HECD2_MOUSE Probable E3 ubiquitin-protein ligase HECTD2 OS=Mus musculus
GN=Hectd2 PE=2 SV=2
Length = 774
Score = 37.0 bits (84), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 27/59 (45%), Gaps = 1/59 (1%)
Query: 109 GGSSWDMKTLMECCRIDHGYNHNSKAIKYLFHVLSCYSSPEQRDFLQFVTGSPRLPVGA 167
G DM L + D GY I+Y + V+ + Q+ L F TGS R+PVG
Sbjct: 661 GSPELDMHALQRSTQYD-GYAKTDLTIRYFWDVVLGFPLELQKKLLHFTTGSDRVPVGG 718
>sp|O00308|WWP2_HUMAN NEDD4-like E3 ubiquitin-protein ligase WWP2 OS=Homo sapiens GN=WWP2
PE=1 SV=2
Length = 870
Score = 36.2 bits (82), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 25/40 (62%)
Query: 128 YNHNSKAIKYLFHVLSCYSSPEQRDFLQFVTGSPRLPVGA 167
Y NSK I++ + V+ + ++ LQFVTG+ RLPVG
Sbjct: 769 YTKNSKQIQWFWQVVKEMDNEKRIRLLQFVTGTCRLPVGG 808
>sp|Q9PUN2|SMUF1_XENLA E3 ubiquitin-protein ligase SMURF1 OS=Xenopus laevis GN=smurf1 PE=2
SV=1
Length = 731
Score = 35.8 bits (81), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 37/84 (44%), Gaps = 13/84 (15%)
Query: 111 SSWDMKTLMECCRIDHGYNHNSKAIKYLFHVLSCYSSPEQRDFLQFVTGSPRLPV----- 165
S W T ++ C NS +++ + + + + LQFVTGS R+P+
Sbjct: 615 SDWKANTRLKHCLA------NSNIVQWFWQAVESFDEERRARLLQFVTGSTRVPLQGFKA 668
Query: 166 --GAKTKCQPKAITLGLIERLTKN 187
G+ P+ T+ LI+ T N
Sbjct: 669 LQGSTGAAGPRLFTIHLIDANTDN 692
>sp|Q7Z6Z7|HUWE1_HUMAN E3 ubiquitin-protein ligase HUWE1 OS=Homo sapiens GN=HUWE1 PE=1 SV=3
Length = 4374
Score = 35.8 bits (81), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 24/40 (60%)
Query: 126 HGYNHNSKAIKYLFHVLSCYSSPEQRDFLQFVTGSPRLPV 165
H Y NS I++ + L + ++ FLQFVTG+ ++P+
Sbjct: 4269 HKYQSNSIQIQWFWRALRSFDQADRAKFLQFVTGTSKVPL 4308
>sp|Q7TMY8|HUWE1_MOUSE E3 ubiquitin-protein ligase HUWE1 OS=Mus musculus GN=Huwe1 PE=1 SV=5
Length = 4377
Score = 35.8 bits (81), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 24/40 (60%)
Query: 126 HGYNHNSKAIKYLFHVLSCYSSPEQRDFLQFVTGSPRLPV 165
H Y NS I++ + L + ++ FLQFVTG+ ++P+
Sbjct: 4272 HKYQSNSIQIQWFWRALRSFDQADRAKFLQFVTGTSKVPL 4311
>sp|Q9V853|SMUF1_DROME E3 ubiquitin-protein ligase Smurf1 OS=Drosophila melanogaster GN=lack
PE=1 SV=3
Length = 1061
Score = 35.4 bits (80), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 38/79 (48%), Gaps = 8/79 (10%)
Query: 109 GGSSWDMKTLMECCRIDHGYNHNSKAIKYLFHVLSCYSSPEQRDFLQFVTGSPRLPV--- 165
G SS D+ R+ H N ++ + + + V+ YSS + LQFVTGS R+P+
Sbjct: 937 GISSIDVNDWRNNTRLKHCTNETTQVL-WFWQVVESYSSEMRARLLQFVTGSSRVPLQGF 995
Query: 166 ----GAKTKCQPKAITLGL 180
G+ P+ T+ L
Sbjct: 996 RALQGSTGAVGPRLFTIHL 1014
>sp|A2A5Z6|SMUF2_MOUSE E3 ubiquitin-protein ligase SMURF2 OS=Mus musculus GN=Smurf2 PE=1
SV=1
Length = 748
Score = 35.0 bits (79), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 36/81 (44%), Gaps = 10/81 (12%)
Query: 111 SSWDMKTLMECCRIDHGYNHNSKAIKYLFHVLSCYSSPEQRDFLQFVTGSPRLPVGAKTK 170
S W + T ++ C D S +K+ + + + + LQFVTGS R+P+
Sbjct: 635 SDWKVNTRLKHCTPD------SNVVKWFWKAVEFFDEERRARLLQFVTGSSRVPLQGFKA 688
Query: 171 CQ----PKAITLGLIERLTKN 187
Q P+ T+ I+ T N
Sbjct: 689 LQGAAGPRLFTIHQIDACTNN 709
>sp|O94275|MUG30_SCHPO Probable E3 ubiquitin-protein ligase mug30 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=mug30 PE=1 SV=1
Length = 807
Score = 34.7 bits (78), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 27/54 (50%)
Query: 126 HGYNHNSKAIKYLFHVLSCYSSPEQRDFLQFVTGSPRLPVGAKTKCQPKAITLG 179
H + K I + + ++S YS Q+ FL FVTGS R+P Q + LG
Sbjct: 710 HSFVSKRKIILWFWDLISHYSLKMQKLFLIFVTGSDRIPATGAHNFQLRISVLG 763
>sp|Q2TAS2|SMUF2_XENLA E3 ubiquitin-protein ligase SMURF2 OS=Xenopus laevis GN=smurf2 PE=2
SV=1
Length = 751
Score = 34.7 bits (78), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 35/81 (43%), Gaps = 10/81 (12%)
Query: 111 SSWDMKTLMECCRIDHGYNHNSKAIKYLFHVLSCYSSPEQRDFLQFVTGSPRLPVGAKTK 170
S W T ++ C D S +K+ + + + + LQFVTGS R+P+
Sbjct: 638 SDWKSNTRLKHCTTD------SNIVKWFWKAVESFDEERRARLLQFVTGSSRVPLQGFKA 691
Query: 171 CQ----PKAITLGLIERLTKN 187
Q P+ T+ I+ T N
Sbjct: 692 LQGAAGPRLFTIHQIDASTNN 712
>sp|Q9HCE7|SMUF1_HUMAN E3 ubiquitin-protein ligase SMURF1 OS=Homo sapiens GN=SMURF1 PE=1
SV=2
Length = 757
Score = 34.7 bits (78), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 37/84 (44%), Gaps = 13/84 (15%)
Query: 111 SSWDMKTLMECCRIDHGYNHNSKAIKYLFHVLSCYSSPEQRDFLQFVTGSPRLPV----- 165
+ W T ++ C D S +++ + + + + LQFVTGS R+P+
Sbjct: 641 NDWKSNTRLKHCVAD------SNIVRWFWQAVETFDEERRARLLQFVTGSTRVPLQGFKA 694
Query: 166 --GAKTKCQPKAITLGLIERLTKN 187
G+ P+ T+ LI+ T N
Sbjct: 695 LQGSTGAAGPRLFTIHLIDANTDN 718
>sp|P51593|HUWE1_RAT E3 ubiquitin-protein ligase HUWE1 (Fragment) OS=Rattus norvegicus
GN=Huwe1 PE=1 SV=2
Length = 322
Score = 34.7 bits (78), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 24/40 (60%)
Query: 126 HGYNHNSKAIKYLFHVLSCYSSPEQRDFLQFVTGSPRLPV 165
H Y NS I++ + L + ++ FLQFVTG+ ++P+
Sbjct: 217 HKYQSNSIQIQWFWRALRSFDQADRAKFLQFVTGTSKVPL 256
>sp|Q9CUN6|SMUF1_MOUSE E3 ubiquitin-protein ligase SMURF1 OS=Mus musculus GN=Smurf1 PE=2
SV=2
Length = 731
Score = 34.7 bits (78), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 37/84 (44%), Gaps = 13/84 (15%)
Query: 111 SSWDMKTLMECCRIDHGYNHNSKAIKYLFHVLSCYSSPEQRDFLQFVTGSPRLPV----- 165
+ W T ++ C D S +++ + + + + LQFVTGS R+P+
Sbjct: 615 NDWKSNTRLKHCVAD------SNIVRWFWQAVETFDEERRARLLQFVTGSTRVPLQGFKA 668
Query: 166 --GAKTKCQPKAITLGLIERLTKN 187
G+ P+ T+ LI+ T N
Sbjct: 669 LQGSTGAAGPRLFTIHLIDANTDN 692
>sp|A9JRZ0|SMUF2_DANRE E3 ubiquitin-protein ligase SMURF2 OS=Danio rerio GN=smurf2 PE=2
SV=1
Length = 765
Score = 34.7 bits (78), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 35/81 (43%), Gaps = 10/81 (12%)
Query: 111 SSWDMKTLMECCRIDHGYNHNSKAIKYLFHVLSCYSSPEQRDFLQFVTGSPRLPVGAKTK 170
+ W T ++ C D S +K+ + + Y + LQFVTGS R+P+
Sbjct: 652 NDWKSNTRLKHCTPD------SNIVKWFWRAVESYDEERRARLLQFVTGSSRVPLQGFKA 705
Query: 171 CQ----PKAITLGLIERLTKN 187
Q P+ T+ I+ T N
Sbjct: 706 LQGAAGPRLFTIHQIDASTNN 726
>sp|Q9UII4|HERC5_HUMAN E3 ISG15--protein ligase HERC5 OS=Homo sapiens GN=HERC5 PE=1 SV=2
Length = 1024
Score = 34.3 bits (77), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 29/57 (50%)
Query: 109 GGSSWDMKTLMECCRIDHGYNHNSKAIKYLFHVLSCYSSPEQRDFLQFVTGSPRLPV 165
G + +D KT + R + GYN + I + + E++ FL F+TG+ RL +
Sbjct: 911 GNTDYDWKTFEKNARYEPGYNSSHPTIVMFWKAFHKLTLEEKKKFLVFLTGTDRLQM 967
>sp|Q9DBH0|WWP2_MOUSE NEDD4-like E3 ubiquitin-protein ligase WWP2 OS=Mus musculus GN=Wwp2
PE=1 SV=1
Length = 870
Score = 34.3 bits (77), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 25/40 (62%)
Query: 128 YNHNSKAIKYLFHVLSCYSSPEQRDFLQFVTGSPRLPVGA 167
Y +SK I++ + V+ + ++ LQFVTG+ RLPVG
Sbjct: 769 YTKSSKQIQWFWQVVKEMDNEKRIRLLQFVTGTCRLPVGG 808
>sp|Q92462|PUB1_SCHPO E3 ubiquitin-protein ligase pub1 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=pub1 PE=1 SV=2
Length = 767
Score = 34.3 bits (77), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 30/55 (54%), Gaps = 4/55 (7%)
Query: 128 YNHNSKAIKYLFHVLSCYSSPEQRDFLQFVTGSPRLPVGAKTKCQ----PKAITL 178
Y+ N + IK+ + ++ +S+ ++ LQF TG+ R+PV Q P+ T+
Sbjct: 666 YSENDQIIKWFWELMDEWSNEKKSRLLQFTTGTSRIPVNGFKDLQGSDGPRKFTI 720
>sp|Q9Y0H4|SUDX_DROME E3 ubiquitin-protein ligase Su(dx) OS=Drosophila melanogaster
GN=Su(dx) PE=1 SV=1
Length = 949
Score = 34.3 bits (77), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 24/40 (60%)
Query: 128 YNHNSKAIKYLFHVLSCYSSPEQRDFLQFVTGSPRLPVGA 167
YN NSK + + + + + ++ LQFVTG+ R+PVG
Sbjct: 848 YNRNSKQVVWFWQFVRETDNEKRARLLQFVTGTCRVPVGG 887
>sp|Q6DCL5|HACE1_XENLA E3 ubiquitin-protein ligase HACE1 OS=Xenopus laevis GN=hace1 PE=2
SV=1
Length = 944
Score = 34.3 bits (77), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 29/59 (49%)
Query: 109 GGSSWDMKTLMECCRIDHGYNHNSKAIKYLFHVLSCYSSPEQRDFLQFVTGSPRLPVGA 167
G D+ M+ GY + + I++ + V+ + E+ LQFVTGS R+P G
Sbjct: 822 GMPEIDVNDWMKNTEYTSGYERDDQVIQWFWEVVQELTQEERVLLLQFVTGSSRVPHGG 880
>sp|Q28BK1|HACE1_XENTR E3 ubiquitin-protein ligase HACE1 OS=Xenopus tropicalis GN=hace1
PE=2 SV=1
Length = 912
Score = 34.3 bits (77), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 29/59 (49%)
Query: 109 GGSSWDMKTLMECCRIDHGYNHNSKAIKYLFHVLSCYSSPEQRDFLQFVTGSPRLPVGA 167
G D+ M+ GY + + I++ + V+ + E+ LQFVTGS R+P G
Sbjct: 790 GMPEIDVNDWMKNTEYTSGYERDDQVIQWFWEVVQELTQEERVLLLQFVTGSSRVPHGG 848
>sp|Q8RWB8|UPL6_ARATH E3 ubiquitin-protein ligase UPL6 OS=Arabidopsis thaliana GN=UPL6
PE=2 SV=1
Length = 1029
Score = 33.9 bits (76), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 28/62 (45%)
Query: 112 SWDMKTLMECCRIDHGYNHNSKAIKYLFHVLSCYSSPEQRDFLQFVTGSPRLPVGAKTKC 171
S D+ L GY+ I + V+ +S+ Q+ FL+FVTG R P+
Sbjct: 911 SLDIDDLRNNTNYAGGYHAGHYVIDMFWEVMKSFSTENQKKFLKFVTGCSRGPLLGFKYL 970
Query: 172 QP 173
+P
Sbjct: 971 EP 972
>sp|Q9HAU4|SMUF2_HUMAN E3 ubiquitin-protein ligase SMURF2 OS=Homo sapiens GN=SMURF2 PE=1
SV=1
Length = 748
Score = 33.5 bits (75), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 36/81 (44%), Gaps = 10/81 (12%)
Query: 111 SSWDMKTLMECCRIDHGYNHNSKAIKYLFHVLSCYSSPEQRDFLQFVTGSPRLPVGAKTK 170
+ W + T ++ C D S +K+ + + + + LQFVTGS R+P+
Sbjct: 635 NDWKVNTRLKHCTPD------SNIVKWFWKAVEFFDEERRARLLQFVTGSSRVPLQGFKA 688
Query: 171 CQ----PKAITLGLIERLTKN 187
Q P+ T+ I+ T N
Sbjct: 689 LQGAAGPRLFTIHQIDACTNN 709
>sp|A1CQG2|RSP5_ASPCL Probable E3 ubiquitin-protein ligase hulA OS=Aspergillus clavatus
(strain ATCC 1007 / CBS 513.65 / DSM 816 / NCTC 3887 /
NRRL 1) GN=hulA PE=3 SV=2
Length = 815
Score = 33.5 bits (75), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 32/69 (46%), Gaps = 10/69 (14%)
Query: 127 GYNHNSKAIKYLFHVLSCYSSPEQRDFLQFVTGSPRLPVGAKTKCQ----PKAITLGLIE 182
GY + I+ + V+ + + ++ LQF TG+ R+PV Q P+ T
Sbjct: 713 GYQESDDVIQNFWKVVRTWDAEQKSRLLQFTTGTSRIPVNGFKDLQGSDGPRRFT----- 767
Query: 183 RLTKNADPV 191
+ K+ DPV
Sbjct: 768 -IEKSGDPV 775
>sp|A2QQ28|RSP5_ASPNC Probable E3 ubiquitin-protein ligase hulA OS=Aspergillus niger
(strain CBS 513.88 / FGSC A1513) GN=hulA PE=3 SV=1
Length = 821
Score = 33.1 bits (74), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 17/69 (24%), Positives = 32/69 (46%), Gaps = 10/69 (14%)
Query: 127 GYNHNSKAIKYLFHVLSCYSSPEQRDFLQFVTGSPRLPVGAKTKCQ----PKAITLGLIE 182
GY + I+ + ++ + + ++ LQF TG+ R+PV Q P+ T
Sbjct: 719 GYQEQDEVIQNFWKIVRTWDAEQKSRLLQFTTGTSRIPVNGFKDLQGSDGPRRFT----- 773
Query: 183 RLTKNADPV 191
+ K+ DP+
Sbjct: 774 -IEKSGDPI 781
>sp|Q9SCQ2|UPL7_ARATH E3 ubiquitin-protein ligase UPL7 OS=Arabidopsis thaliana GN=UPL7 PE=2
SV=1
Length = 1142
Score = 33.1 bits (74), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 36/83 (43%), Gaps = 4/83 (4%)
Query: 98 LRVLNAVNRNW----GGSSWDMKTLMECCRIDHGYNHNSKAIKYLFHVLSCYSSPEQRDF 153
L++ NA N G D+ L + GY+ +S+ IK + V+ + E+
Sbjct: 1000 LKLFNAHEFNQLLSGGNHDIDVDDLRRNTKYTGGYSDSSRTIKIFWEVMKGFEPSERCLL 1059
Query: 154 LQFVTGSPRLPVGAKTKCQPKAI 176
L+FVT R P+ QP I
Sbjct: 1060 LKFVTSCSRAPLLGFKYLQPTFI 1082
>sp|Q57PU8|SYFB_SALCH Phenylalanine--tRNA ligase beta subunit OS=Salmonella choleraesuis
(strain SC-B67) GN=pheT PE=3 SV=1
Length = 795
Score = 32.7 bits (73), Expect = 1.3, Method: Composition-based stats.
Identities = 20/57 (35%), Positives = 27/57 (47%), Gaps = 2/57 (3%)
Query: 65 LVPLSRSPLDPYLSDTLPPSVTITDACLPVLTLLRVLNAVNRNWGGSSWDMKTLMEC 121
L L +P+ +SDTLP +V DAC L RV+ +N N W + L C
Sbjct: 187 LQELEMAPVTATISDTLPITVEAADACPRYLG--RVVKGINVNAPTPLWMKEKLRRC 241
>sp|O13834|PTR1_SCHPO E3 ubiquitin-protein ligase ptr1 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=ptr1 PE=1 SV=1
Length = 3227
Score = 32.7 bits (73), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 12/42 (28%), Positives = 24/42 (57%)
Query: 126 HGYNHNSKAIKYLFHVLSCYSSPEQRDFLQFVTGSPRLPVGA 167
HGYN +S +++ + + + E+ LQF TG+ ++P+
Sbjct: 3122 HGYNVSSPQVQWFWRAVRSFDEEERAKLLQFATGTSKVPLNG 3163
>sp|P46934|NEDD4_HUMAN E3 ubiquitin-protein ligase NEDD4 OS=Homo sapiens GN=NEDD4 PE=1 SV=4
Length = 1319
Score = 32.7 bits (73), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 15/54 (27%), Positives = 29/54 (53%)
Query: 114 DMKTLMECCRIDHGYNHNSKAIKYLFHVLSCYSSPEQRDFLQFVTGSPRLPVGA 167
D+ E + +GY+ N + I++ + + S ++ LQFVTG+ R+P+
Sbjct: 1203 DVNDWREHTKYKNGYSANHQVIQWFWKAVLMMDSEKRIRLLQFVTGTSRVPMNG 1256
>sp|E1C656|HACE1_CHICK E3 ubiquitin-protein ligase HACE1 OS=Gallus gallus GN=HACE1 PE=2
SV=1
Length = 942
Score = 32.3 bits (72), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 23/41 (56%)
Query: 127 GYNHNSKAIKYLFHVLSCYSSPEQRDFLQFVTGSPRLPVGA 167
GY + I++ + V+ + E+ LQFVTGS R+P G
Sbjct: 838 GYERGDQVIQWFWDVVEELTQEERVLLLQFVTGSSRVPHGG 878
>sp|A1D3C5|RSP5_NEOFI Probable E3 ubiquitin-protein ligase hulA OS=Neosartorya fischeri
(strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181)
GN=hulA PE=3 SV=1
Length = 816
Score = 32.3 bits (72), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 18/69 (26%), Positives = 32/69 (46%), Gaps = 10/69 (14%)
Query: 127 GYNHNSKAIKYLFHVLSCYSSPEQRDFLQFVTGSPRLPVGAKTKCQ----PKAITLGLIE 182
GY + + I+ + V+ + + ++ LQF TG+ R+PV Q P+ T
Sbjct: 714 GYQESDEVIQNFWKVVRSWDAEQKSRLLQFTTGTSRIPVNGFKDLQGSDGPRRFT----- 768
Query: 183 RLTKNADPV 191
+ K+ DP
Sbjct: 769 -IEKSGDPA 776
>sp|P39940|RSP5_YEAST E3 ubiquitin-protein ligase RSP5 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=RSP5 PE=1 SV=1
Length = 809
Score = 32.3 bits (72), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 18/67 (26%), Positives = 35/67 (52%), Gaps = 7/67 (10%)
Query: 127 GYNHNSKAIKYLFHVLSCYSSPEQRDFLQFVTGSPRLPVGAKTKCQ----PKAITL---G 179
GY + + I++ + +S + + ++ LQF TG+ R+PV Q P+ T+ G
Sbjct: 707 GYQESDEVIQWFWKCVSEWDNEQRARLLQFTTGTSRIPVNGFKDLQGSDGPRRFTIEKAG 766
Query: 180 LIERLTK 186
+++L K
Sbjct: 767 EVQQLPK 773
>sp|P46935|NEDD4_MOUSE E3 ubiquitin-protein ligase NEDD4 OS=Mus musculus GN=Nedd4 PE=1
SV=3
Length = 887
Score = 32.3 bits (72), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 15/54 (27%), Positives = 28/54 (51%)
Query: 114 DMKTLMECCRIDHGYNHNSKAIKYLFHVLSCYSSPEQRDFLQFVTGSPRLPVGA 167
D+ E + +GY+ N + I + + + S ++ LQFVTG+ R+P+
Sbjct: 771 DVNDWREHTKYKNGYSMNHQVIHWFWKAVWMMDSEKRIRLLQFVTGTSRVPMNG 824
>sp|Q8C863|ITCH_MOUSE E3 ubiquitin-protein ligase Itchy OS=Mus musculus GN=Itch PE=1 SV=2
Length = 864
Score = 32.3 bits (72), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 22/40 (55%)
Query: 128 YNHNSKAIKYLFHVLSCYSSPEQRDFLQFVTGSPRLPVGA 167
Y SK I + + + + ++ LQFVTG+ RLPVG
Sbjct: 763 YTRTSKQIMWFWQFVKEIDNEKRMRLLQFVTGTCRLPVGG 802
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.134 0.433
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 76,355,176
Number of Sequences: 539616
Number of extensions: 3001383
Number of successful extensions: 5881
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 64
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 5807
Number of HSP's gapped (non-prelim): 93
length of query: 191
length of database: 191,569,459
effective HSP length: 111
effective length of query: 80
effective length of database: 131,672,083
effective search space: 10533766640
effective search space used: 10533766640
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (26.9 bits)