Query psy4370
Match_columns 191
No_of_seqs 175 out of 1180
Neff 5.5
Searched_HMMs 46136
Date Fri Aug 16 23:47:56 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4370.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/4370hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG5021 HUL4 Ubiquitin-protein 100.0 1.2E-29 2.6E-34 248.1 3.3 143 25-186 685-836 (872)
2 smart00119 HECTc Domain Homolo 99.9 3E-28 6.4E-33 216.9 4.8 145 20-186 149-300 (336)
3 cd00078 HECTc HECT domain; C-t 99.9 1.4E-27 3E-32 212.9 4.7 144 21-186 168-318 (352)
4 KOG0939|consensus 99.9 1.5E-26 3.2E-31 219.1 4.3 142 23-187 531-684 (720)
5 KOG0941|consensus 99.9 5E-26 1.1E-30 218.9 4.1 145 24-186 669-814 (850)
6 KOG0942|consensus 99.9 3.7E-26 8E-31 221.1 2.9 147 21-188 814-967 (1001)
7 PF00632 HECT: HECT-domain (ub 99.9 1.8E-24 4E-29 188.7 4.6 141 24-186 131-280 (317)
8 KOG4427|consensus 99.9 3.7E-23 8E-28 197.7 5.5 138 22-178 883-1025(1096)
9 KOG0170|consensus 99.9 5.7E-22 1.2E-26 183.5 7.1 123 57-189 456-579 (621)
10 KOG0940|consensus 99.6 2.5E-15 5.5E-20 135.8 6.3 131 27-180 184-321 (358)
11 KOG0943|consensus 98.1 2.4E-06 5.1E-11 86.9 4.5 124 22-167 2828-2959(3015)
12 PHA02681 ORF089 virion membran 34.4 24 0.00051 26.3 1.3 20 143-162 50-69 (92)
13 PF13945 NST1: Salt tolerance 31.2 33 0.00073 28.9 1.9 22 131-155 103-124 (190)
No 1
>COG5021 HUL4 Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=1.2e-29 Score=248.12 Aligned_cols=143 Identities=18% Similarity=0.199 Sum_probs=121.6
Q ss_pred eeeccCCcccceeecCCCCCcccCCCCCchhhhhHhhhccccccccccccchhcccCCCceeeccCchhHHHHHHHHHHh
Q psy4370 25 SPFKPGLSLLWACYRGHNQGKSVSGKSSSKRKADEIWSDGLVPLSRSPLDPYLSDTLPPSVTITDACLPVLTLLRVLNAV 104 (191)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~rk~d~l~~dgv~p~v~~~L~~FL~~~lp~~v~I~D~s~~~L~LLrl~~~L 104 (191)
+++||||++|.++-.|++.+.. +..|+....+|.+|..++..+|.+.+.++.++++|+.+.++.
T Consensus 685 VeLipnG~ni~VT~~Nk~eYV~--------~vvdy~L~k~ie~Q~~AF~~GF~~ii~~~~i~iF~e~ELe~L-------- 748 (872)
T COG5021 685 VELIPNGRNISVTNENKKEYVK--------KVVDYKLNKRVEKQFSAFKSGFSEIIPPDLLQIFDESELELL-------- 748 (872)
T ss_pred EEeccCCccccccchHHHHHHH--------HHHHHHhhhhHHHHHHHHHhhHHHhcCHHHHhhcCHHHHHHH--------
Confidence 8899999999333333322221 455667888999999999999999999999999999887764
Q ss_pred hhccCCCC-cChhhhhcceEeCCCCCCCCHHHHHHHHHHhcCCHHHHHhhcchhcCCCCCCCCccccCcce----EEEcC
Q psy4370 105 NRNWGGSS-WDMKTLMECCRIDHGYNHNSKAIKYLFHVLSCYSSPEQRDFLQFVTGSPRLPVGAKTKCQPK----AITLG 179 (191)
Q Consensus 105 srlcG~~~-idv~dlk~~t~y~~Gy~~~~~~I~wFW~vv~~fs~eer~~fL~FvTGssrlP~gGf~~L~p~----~~~i~ 179 (191)
+||.++ ||++|||+||.|. ||+.++|+|.|||++|++|+.|+|++|||||||++|+|++||++|+|+ .++|+
T Consensus 749 --I~G~~e~iDidd~K~~T~Y~-GY~~~s~~I~wFWeii~~f~~eer~klLQFvTGtsriPi~GFk~L~~~~~~~kf~I~ 825 (872)
T COG5021 749 --IGGIPEDIDIDDWKSNTAYH-GYTEDSPIIVWFWEIISEFDFEERAKLLQFVTGTSRIPINGFKDLQGSDGVRKFTIE 825 (872)
T ss_pred --HCCCCccccHHHHhhccccc-ccccCCcHHHHHHHHHHHhCHHHHhhhheeccCCCCCCCCChhhcCCCcccceeeee
Confidence 689888 9999999999997 699999999999999999999999999999999999999999999984 55554
Q ss_pred ----cCCCCCC
Q psy4370 180 ----LIERLTK 186 (191)
Q Consensus 180 ----~~~~l~~ 186 (191)
..++||+
T Consensus 826 ~~g~~~~rLP~ 836 (872)
T COG5021 826 KGGTDDDRLPS 836 (872)
T ss_pred cCCCccccCCc
Confidence 5777986
No 2
>smart00119 HECTc Domain Homologous to E6-AP Carboxyl Terminus with. E3 ubiquitin-protein ligases. Can bind to E2 enzymes.
Probab=99.94 E-value=3e-28 Score=216.94 Aligned_cols=145 Identities=25% Similarity=0.298 Sum_probs=118.4
Q ss_pred ccceeeeeccCCcccceeecCCCCCcccCCCCCchhhhh----HhhhccccccccccccchhcccCCCceeeccCchhHH
Q psy4370 20 KQRVMSPFKPGLSLLWACYRGHNQGKSVSGKSSSKRKAD----EIWSDGLVPLSRSPLDPYLSDTLPPSVTITDACLPVL 95 (191)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~rk~d----~l~~dgv~p~v~~~L~~FL~~~lp~~v~I~D~s~~~L 95 (191)
.++.-.+++|||+.+. ++..+++.+++ +....++..++.+..++|..+.+.+.+.++++.+.++
T Consensus 149 g~~~~~eL~~~G~~~~------------Vt~~N~~eYv~~~~~~~l~~~~~~~~~afr~Gf~~vip~~~l~~f~~~eL~~ 216 (336)
T smart00119 149 GQVKVVELKPGGSNIP------------VTEENKKEYVHLVIEYRLNKGIEKQLEAFREGFSEVIPENLLRLFTPEELEL 216 (336)
T ss_pred CCcceEecCCCCCCCc------------CCHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHcCHHHhhCCCHHHHHH
Confidence 3456678999998873 33333333333 3455777788888888998888777667766655443
Q ss_pred HHHHHHHHhhhccCCCCcChhhhhcceEeCCCCCCCCHHHHHHHHHHhcCCHHHHHhhcchhcCCCCCCCCccccCcceE
Q psy4370 96 TLLRVLNAVNRNWGGSSWDMKTLMECCRIDHGYNHNSKAIKYLFHVLSCYSSPEQRDFLQFVTGSPRLPVGAKTKCQPKA 175 (191)
Q Consensus 96 ~LLrl~~~LsrlcG~~~idv~dlk~~t~y~~Gy~~~~~~I~wFW~vv~~fs~eer~~fL~FvTGssrlP~gGf~~L~p~~ 175 (191)
.+||.++||+++|++||+|++||++++++|+|||++|++||+++|++||+|+|||+|+|++||+.++|++
T Consensus 217 ----------licG~~~i~~~~l~~~~~~~~g~~~~~~~i~~Fw~vl~~~s~ee~~~fL~F~TG~~rlP~~G~~~l~~~~ 286 (336)
T smart00119 217 ----------LICGSPEIDVDDLKSNTEYKGGYSENSQTIKWFWEVVESFTNEERRKLLQFVTGSSRLPVGGFAALSPKF 286 (336)
T ss_pred ----------HhCCCCCCCHHHHhhheEEcCCCCCCCHHHHHHHHHHHHCCHHHHHHhheeccCCCCCCCCchhhcCCce
Confidence 3699999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEcC---cCCCCCC
Q psy4370 176 ITLG---LIERLTK 186 (191)
Q Consensus 176 ~~i~---~~~~l~~ 186 (191)
.+.. ..++||.
T Consensus 287 ~i~~~~~~~~~LP~ 300 (336)
T smart00119 287 TIRKAGSDDDRLPT 300 (336)
T ss_pred EEEECCCCCCCCCc
Confidence 8875 4777775
No 3
>cd00078 HECTc HECT domain; C-terminal catalytic domain of a subclass of Ubiquitin-protein ligase (E3). It binds specific ubiquitin-conjugating enzymes (E2), accepts ubiquitin from E2, transfers ubiquitin to substrate lysine side chains, and transfers additional ubiquitin molecules to the end of growing ubiquitin chains.
Probab=99.94 E-value=1.4e-27 Score=212.90 Aligned_cols=144 Identities=24% Similarity=0.332 Sum_probs=117.4
Q ss_pred cceeeeeccCCcccceeecCCCCCcccCCCCCchhhhhH----hhhccccccccccccchhcccCCCceeeccCchhHHH
Q psy4370 21 QRVMSPFKPGLSLLWACYRGHNQGKSVSGKSSSKRKADE----IWSDGLVPLSRSPLDPYLSDTLPPSVTITDACLPVLT 96 (191)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~rk~d~----l~~dgv~p~v~~~L~~FL~~~lp~~v~I~D~s~~~L~ 96 (191)
++.-.+++|||+++ ++|..+.+++++. ....++..++++..++|..+.+...+.++++.+.++
T Consensus 168 ~~~~veL~~~G~~~------------~VT~~N~~eYv~~~~~~~l~~~~~~~~~afr~Gf~~vip~~~l~~f~~~eL~~- 234 (352)
T cd00078 168 GAVTVELKPGGRDI------------PVTNENKEEYVDLYVDYRLNKGIEEQVEAFRDGFSEVIPEELLSLFTPEELEL- 234 (352)
T ss_pred CcceEecCCCCCCC------------cCCHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHcCHHhhhCCCHHHHHH-
Confidence 45566889999887 3444444444443 345577788888888888888777777776665443
Q ss_pred HHHHHHHhhhccCCCCcChhhhhcceEeCCCCCCCCHHHHHHHHHHhcCCHHHHHhhcchhcCCCCCCCCccccCcceEE
Q psy4370 97 LLRVLNAVNRNWGGSSWDMKTLMECCRIDHGYNHNSKAIKYLFHVLSCYSSPEQRDFLQFVTGSPRLPVGAKTKCQPKAI 176 (191)
Q Consensus 97 LLrl~~~LsrlcG~~~idv~dlk~~t~y~~Gy~~~~~~I~wFW~vv~~fs~eer~~fL~FvTGssrlP~gGf~~L~p~~~ 176 (191)
.+||.++||+++|++|++|++||+.++++|+|||++|++||+++|++||+|+|||+|+|++||+.++|++.
T Consensus 235 ---------lvcG~~~id~~~l~~~~~y~~~~~~~~~~i~~Fw~vl~~~s~eer~~fL~F~TG~~rlP~~G~~~l~~~i~ 305 (352)
T cd00078 235 ---------LICGSEDIDLEDLKKNTEYKGGYSSDSPTIQWFWEVLESFTNEERKKFLQFVTGSSRLPVGGFADLNPKFT 305 (352)
T ss_pred ---------HhCCCCCCCHHHHHhceEecCCCCCCCHHHHHHHHHHHhCCHHHHHHhheeecCCCCCCCcchhhcCCCeE
Confidence 36999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred EcC---cCCCCCC
Q psy4370 177 TLG---LIERLTK 186 (191)
Q Consensus 177 ~i~---~~~~l~~ 186 (191)
+.. ..++||.
T Consensus 306 i~~~~~~~~~LP~ 318 (352)
T cd00078 306 IRRVGSPDDRLPT 318 (352)
T ss_pred EEECCCCCCCCCc
Confidence 875 2667775
No 4
>KOG0939|consensus
Probab=99.92 E-value=1.5e-26 Score=219.11 Aligned_cols=142 Identities=18% Similarity=0.223 Sum_probs=119.0
Q ss_pred eeeeeccCCcccceeecCCCCCcccCCCCCchhhhhH----hhhccccccccccccchhcccCCCceeeccCchhHHHHH
Q psy4370 23 VMSPFKPGLSLLWACYRGHNQGKSVSGKSSSKRKADE----IWSDGLVPLSRSPLDPYLSDTLPPSVTITDACLPVLTLL 98 (191)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~rk~d~----l~~dgv~p~v~~~L~~FL~~~lp~~v~I~D~s~~~L~LL 98 (191)
..+++||||-.+ .++..++.++++. +...++.+++.+++++|.+..+...+.|+|.++.+|.
T Consensus 531 ~~~eL~p~G~~i------------~Vt~~nK~~yv~lv~q~rL~~~ir~ql~afl~Gl~~iip~~li~if~E~ELELL-- 596 (720)
T KOG0939|consen 531 SVVELKPGGAKI------------YVTEANKQEYVQLVTQYRLTNSIRKQLDAFLAGLHEIIPKVLLSIFDEQELELL-- 596 (720)
T ss_pred ceeecccCCCce------------eeccccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhHHHHHHHhhhHHHHHH--
Confidence 556799999998 4555666666665 4566667777777777777777778888888887764
Q ss_pred HHHHHhhhccCCCCcChhhhhcceEeCCCCCCCCHHHHHHHHHHhcCCHHHHHhhcchhcCCCCCCCCccccCcc-----
Q psy4370 99 RVLNAVNRNWGGSSWDMKTLMECCRIDHGYNHNSKAIKYLFHVLSCYSSPEQRDFLQFVTGSPRLPVGAKTKCQP----- 173 (191)
Q Consensus 99 rl~~~LsrlcG~~~idv~dlk~~t~y~~Gy~~~~~~I~wFW~vv~~fs~eer~~fL~FvTGssrlP~gGf~~L~p----- 173 (191)
+||.++||++|||+||+|. ||+..+++|+|||++|.+|++++|++|||||||||++|++||++|.+
T Consensus 597 --------isGlpeidvdd~k~nt~y~-~~~~~~~~i~wFWrav~sf~~eeraklLqFvTGtSkvP~~GF~~l~g~ng~q 667 (720)
T KOG0939|consen 597 --------ISGLPEIDVDDLKANTEYL-GYTKASSVIQWFWRAVRSFDQEERAKLLQFVTGTSKVPLGGFAALEGMNGVQ 667 (720)
T ss_pred --------HcCCCcccHHHHHhhhhhh-cccccchHHHHHHHHHhhhcHHHHHhhHeeecccccCCcccccccccCCcce
Confidence 6999999999999999997 69999999999999999999999999999999999999999999997
Q ss_pred eEEEcCc---CCCCCCC
Q psy4370 174 KAITLGL---IERLTKN 187 (191)
Q Consensus 174 ~~~~i~~---~~~l~~~ 187 (191)
+|++..+ .|+||..
T Consensus 668 ~fqi~~~~~s~d~LP~a 684 (720)
T KOG0939|consen 668 KFQIHADPGSTDRLPTA 684 (720)
T ss_pred eEEEEeCCCCCCCCcch
Confidence 6666654 5888864
No 5
>KOG0941|consensus
Probab=99.92 E-value=5e-26 Score=218.90 Aligned_cols=145 Identities=21% Similarity=0.250 Sum_probs=126.1
Q ss_pred eeeeccCCcccceeecCCCCCcccCCCCCchhhhhHhhhccccccccccccchhcccCCCceeeccCchhHHHHHHHHHH
Q psy4370 24 MSPFKPGLSLLWACYRGHNQGKSVSGKSSSKRKADEIWSDGLVPLSRSPLDPYLSDTLPPSVTITDACLPVLTLLRVLNA 103 (191)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~rk~d~l~~dgv~p~v~~~L~~FL~~~lp~~v~I~D~s~~~L~LLrl~~~ 103 (191)
..+++|||+.|++|-.|++.+.. .++|.+.+..|.++..++..+|..++--+.+.+++|++.+.
T Consensus 669 ~~~L~~nG~~i~vt~~Nr~efV~--------~Yvd~~~n~sv~~q~~aF~~GF~~v~~~~~l~lf~peEl~~-------- 732 (850)
T KOG0941|consen 669 TYELKPNGDEIPVTNENRREFVN--------LYVDYILNKSVKKQFEAFRRGFYKVCDENLLRLFQPEELEK-------- 732 (850)
T ss_pred eeeccCCCcccccccccHHHHHH--------HHHHHHHhhhHHHHHHHHHHHHHHHhchhhhhhcCHHHHHH--------
Confidence 67899999999554444443322 67777899999999999999999998887777777776443
Q ss_pred hhhccCCCCcChhhhhcceEeCCCCCCCCHHHHHHHHHHhcCCHHHHHhhcchhcCCCCCCCCccccCcceEEEcC-cCC
Q psy4370 104 VNRNWGGSSWDMKTLMECCRIDHGYNHNSKAIKYLFHVLSCYSSPEQRDFLQFVTGSPRLPVGAKTKCQPKAITLG-LIE 182 (191)
Q Consensus 104 LsrlcG~~~idv~dlk~~t~y~~Gy~~~~~~I~wFW~vv~~fs~eer~~fL~FvTGssrlP~gGf~~L~p~~~~i~-~~~ 182 (191)
.+||+.++|++.++++|+|++||+.+||+|+|||++++.|+.++|++||+|+|||+|+|++|.+.|+..+.+-+ +.+
T Consensus 733 --li~G~~~~Dw~~l~~~~~Y~ggy~~~~~~I~~FWe~~~~~~~~~kkkfL~F~TGsdRipv~G~~~l~~~i~~~~~~~~ 810 (850)
T KOG0941|consen 733 --LICGSEDYDWKALEETTEYDGGYTSDSPTIQWFWEIFHAFTLEEKKKFLQFLTGSDRIPVGGLAKLKLVIQKNGPDED 810 (850)
T ss_pred --HHhCCCccCHHHHhhhceecCcccCCChHHHHHHHHHHhCCHHHhhhheEeecCCCccccCChhhceEEEecCCCCcc
Confidence 36999999999999999999999999999999999999999999999999999999999999999999999887 688
Q ss_pred CCCC
Q psy4370 183 RLTK 186 (191)
Q Consensus 183 ~l~~ 186 (191)
+||.
T Consensus 811 ~lP~ 814 (850)
T KOG0941|consen 811 RLPV 814 (850)
T ss_pred cCcc
Confidence 8885
No 6
>KOG0942|consensus
Probab=99.92 E-value=3.7e-26 Score=221.05 Aligned_cols=147 Identities=19% Similarity=0.217 Sum_probs=114.7
Q ss_pred cceeeeeccCCcccceeecCCCCCcccCCCCCchhhhhHhhhccccccccccccchhcccCCCceeeccCchhHHHHHHH
Q psy4370 21 QRVMSPFKPGLSLLWACYRGHNQGKSVSGKSSSKRKADEIWSDGLVPLSRSPLDPYLSDTLPPSVTITDACLPVLTLLRV 100 (191)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~rk~d~l~~dgv~p~v~~~L~~FL~~~lp~~v~I~D~s~~~L~LLrl 100 (191)
+++.+.+|||||.+.++-.|+=.+.+.++.+... -.+..+..++..++-..+.|+ .|+|
T Consensus 814 ~~~vVeLkPnGs~i~VTneNvi~YihLVsnY~LN--------~rir~~c~AFr~Gls~II~~e-------------Wl~M 872 (1001)
T KOG0942|consen 814 ERQVVELKPNGSKIRVTNENVIEYIHLVSNYKLN--------QRIRRQCSAFRKGLSQIISPE-------------WLRM 872 (1001)
T ss_pred cceeEEeccCCccceeechhhhhhhHHhhhhHHH--------HHHHHHHHHHhcchhhcCCHH-------------HHHh
Confidence 6778999999999977777777666655554443 222233333334444334443 5667
Q ss_pred HHHhh---hccCCC-CcChhhhhcceEeCCCCCCCCHHHHHHHHHHhcCCHHHHHhhcchhcCCCCCCCCccccCcceEE
Q psy4370 101 LNAVN---RNWGGS-SWDMKTLMECCRIDHGYNHNSKAIKYLFHVLSCYSSPEQRDFLQFVTGSPRLPVGAKTKCQPKAI 176 (191)
Q Consensus 101 ~~~Ls---rlcG~~-~idv~dlk~~t~y~~Gy~~~~~~I~wFW~vv~~fs~eer~~fL~FvTGssrlP~gGf~~L~p~~~ 176 (191)
|+..+ .+.|.+ .||++|||+||+|.|||+++||+|..||+|+++|+.|+|++||+|||||+|.|+.|||+|.|+|+
T Consensus 873 F~~~ELQiLIsG~~~pidldDLr~~teY~Ggy~~~hp~Iv~FWeVl~~F~~edKr~fLKFVTscsRpPllGFK~L~P~Fc 952 (1001)
T KOG0942|consen 873 FNEHELQILISGAEDPIDLDDLRKNTEYAGGYSPDHPTIVMFWEVLEEFSDEDKRKFLKFVTSCSRPPLLGFKALDPAFC 952 (1001)
T ss_pred hChhheeeeecCCcCcccHHHHHhhccccCCCCCCCCchhHHHHHHHhcchHHHHHHHHHHhcCCCcccccchhcCccce
Confidence 77643 245754 69999999999999999999999999999999999999999999999999999999999999998
Q ss_pred EcC---cCCCCCCCC
Q psy4370 177 TLG---LIERLTKNA 188 (191)
Q Consensus 177 ~i~---~~~~l~~~~ 188 (191)
|.. +.+|||+-+
T Consensus 953 I~n~gsd~~RLPTAS 967 (1001)
T KOG0942|consen 953 IRNAGSDDDRLPTAS 967 (1001)
T ss_pred eeeCCCccccCCcHH
Confidence 773 899999754
No 7
>PF00632 HECT: HECT-domain (ubiquitin-transferase); InterPro: IPR000569 The name HECT comes from 'Homologous to the E6-AP Carboxyl Terminus' []. Proteins containing this domain at the C terminus include ubiquitin-protein ligase, which regulates ubiquitination of CDC25. Ubiquitin-protein ligase accepts ubiquitin from an E2 ubiquitin-conjugating enzyme in the form of a thioester, and then directly transfers the ubiquitin to targeted substrates. A cysteine residue is required for ubiquitin-thiolester formation. Human thyroid receptor interacting protein 12, which also contains this domain, is a component of an ATP-dependent multisubunit protein that interacts with the ligand binding domain of the thyroid hormone receptor. It could be an E3 ubiquitin-protein ligase. Human ubiquitin-protein ligase E3A interacts with the E6 protein of the cancer-associated Human papillomavirus type 16 and Human papillomavirus type 18. The E6/E6-AP complex binds to and targets the P53 tumour-suppressor protein for ubiquitin-mediated proteolysis.; GO: 0016881 acid-amino acid ligase activity, 0006464 protein modification process, 0005622 intracellular; PDB: 3TUG_A 1ZVD_A 1C4Z_C 1D5F_B 1ND7_A 2XBB_A 2XBF_A 3PT3_A 3G1N_B 3H1D_A ....
Probab=99.90 E-value=1.8e-24 Score=188.69 Aligned_cols=141 Identities=23% Similarity=0.270 Sum_probs=102.3
Q ss_pred eeeeccCCcccceeecCCCCCcccCCCCCchhhhh----HhhhccccccccccccchhcccCCCceeeccCchhHHHHHH
Q psy4370 24 MSPFKPGLSLLWACYRGHNQGKSVSGKSSSKRKAD----EIWSDGLVPLSRSPLDPYLSDTLPPSVTITDACLPVLTLLR 99 (191)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~rk~d----~l~~dgv~p~v~~~L~~FL~~~lp~~v~I~D~s~~~L~LLr 99 (191)
-.+++|||+.+ +++..++..+.. ++..+++..++.+..++|..+.+...+.++++.+...
T Consensus 131 ~~eL~~~G~~~------------~Vt~~N~~eyv~~~~~~~l~~~~~~~~~~~r~Gf~~vi~~~~l~~f~~~eL~~---- 194 (317)
T PF00632_consen 131 EVELIPGGSNI------------PVTNENKEEYVRLLAQYRLNESVKKQLEAFRKGFYSVIPLELLSLFSPEELER---- 194 (317)
T ss_dssp EEESSTTGGGS------------B-TTTTHHHHHHHHHHHHHTTTTHHHHHHHHHHHHHHSSHHHHTTSSHHHHHH----
T ss_pred EeeecCCCccc------------ccchhhhhHHHHhhhhhhcccccchhHHHHhcchhhcchhHHHHcCCHHHHHH----
Confidence 35677777665 344444443333 3455667777778888888877765555554444222
Q ss_pred HHHHhhhccCCCC-cChhhhhcceEeCCCCCCCCHHHHHHHHHHhcCCHHHHHhhcchhcCCCCCCCCccccCcceEEEc
Q psy4370 100 VLNAVNRNWGGSS-WDMKTLMECCRIDHGYNHNSKAIKYLFHVLSCYSSPEQRDFLQFVTGSPRLPVGAKTKCQPKAITL 178 (191)
Q Consensus 100 l~~~LsrlcG~~~-idv~dlk~~t~y~~Gy~~~~~~I~wFW~vv~~fs~eer~~fL~FvTGssrlP~gGf~~L~p~~~~i 178 (191)
.+||.++ ||+++|+++++|++||+.++++|+|||++|++||+++|++||+|+||++|+|++||+.|+|++.+.
T Consensus 195 ------l~~G~~~~i~~~~l~~~~~~~~g~~~~~~~i~~fw~vl~~~s~~~~~~fL~F~TG~~~lP~~G~~~l~~~i~i~ 268 (317)
T PF00632_consen 195 ------LLCGSPEPIDVEDLKSNTRYEGGYTESSPVIQWFWEVLEEFSQEERRKFLRFVTGSSRLPPGGFSNLNPKITIQ 268 (317)
T ss_dssp ------HHHCBSS---HHHHHHTEEEESSS-TTSHHHHHHHHHHHHS-HHHHHHHHHHHHSSSSB-TTGGGGGE-EEEEE
T ss_pred ------HhcCccccCCHHHHHhcccchhccccccceeeEEeeeeccCCHHHhheeEEEecCCCCCCccccccccceeEEe
Confidence 3699999 999999999999999999999999999999999999999999999999999999999999998877
Q ss_pred Cc----CCCCCC
Q psy4370 179 GL----IERLTK 186 (191)
Q Consensus 179 ~~----~~~l~~ 186 (191)
.. .++||.
T Consensus 269 ~~~~~~~~~LP~ 280 (317)
T PF00632_consen 269 FSDDSPDDRLPT 280 (317)
T ss_dssp EESC-STTS--E
T ss_pred ecCCCccccCce
Confidence 52 457774
No 8
>KOG4427|consensus
Probab=99.87 E-value=3.7e-23 Score=197.74 Aligned_cols=138 Identities=20% Similarity=0.250 Sum_probs=111.5
Q ss_pred ceeee--eccCCcccceeecCCCCCcccCCCCCchhhhhHhhhccccccccccccchhcccCCCceeeccCchhHHHHHH
Q psy4370 22 RVMSP--FKPGLSLLWACYRGHNQGKSVSGKSSSKRKADEIWSDGLVPLSRSPLDPYLSDTLPPSVTITDACLPVLTLLR 99 (191)
Q Consensus 22 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~k~~~~rk~d~l~~dgv~p~v~~~L~~FL~~~lp~~v~I~D~s~~~L~LLr 99 (191)
|+||- ++|||.-++++-.|+=.+. +.+.+..++..++++..++..+|-.-.-|+.+..+.+.+
T Consensus 883 Gkis~~eL~PgGkt~sVtneNKi~YI--------H~MA~~rmnrqi~eqt~Af~rG~rsii~P~WlslFs~~e------- 947 (1096)
T KOG4427|consen 883 GKISTIELKPGGKTISVTNENKIQYI--------HAMAHFRMNRQIVEQTNAFYRGFRSIISPEWLSLFSPPE------- 947 (1096)
T ss_pred cceeEEEeccCCcceeccccchHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHccCcHH-------
Confidence 55664 9999999833332222222 266677788888888888888888878887776665544
Q ss_pred HHHHhhh-ccC-CCCcChhhhhcceEeCCCCCCCCHHHHHHHHHHhc-CCHHHHHhhcchhcCCCCCCCCccccCcceEE
Q psy4370 100 VLNAVNR-NWG-GSSWDMKTLMECCRIDHGYNHNSKAIKYLFHVLSC-YSSPEQRDFLQFVTGSPRLPVGAKTKCQPKAI 176 (191)
Q Consensus 100 l~~~Lsr-lcG-~~~idv~dlk~~t~y~~Gy~~~~~~I~wFW~vv~~-fs~eer~~fL~FvTGssrlP~gGf~~L~p~~~ 176 (191)
+++ +.| +.+||++|||+||.|-|||+.+|++|+|||+|++. |++|||+.||+|||.|||.|+-||+.|+|+|.
T Consensus 948 ----lq~LiSG~nsdiDl~DLkrnt~Y~GGfh~shrvIkwlWdIl~~dFt~eERklfLKFVTSCSrpPlLGFayLePpFs 1023 (1096)
T KOG4427|consen 948 ----LQRLISGDNSDIDLDDLKRNTKYYGGFHDSHRVIKWLWDILAGDFTPEERKLFLKFVTSCSRPPLLGFAYLEPPFS 1023 (1096)
T ss_pred ----HHHHhcCCCCCCCHHHHHhcCEeecccCCcchhHHHHHHHHhccCChHHHHHHHHHHhhcCCCccccccccCCCce
Confidence 222 345 67999999999999999999999999999999997 99999999999999999999999999999988
Q ss_pred Ec
Q psy4370 177 TL 178 (191)
Q Consensus 177 ~i 178 (191)
+-
T Consensus 1024 Ir 1025 (1096)
T KOG4427|consen 1024 IR 1025 (1096)
T ss_pred EE
Confidence 54
No 9
>KOG0170|consensus
Probab=99.85 E-value=5.7e-22 Score=183.53 Aligned_cols=123 Identities=32% Similarity=0.420 Sum_probs=106.6
Q ss_pred hhHhhhccccccccccccchhcccCCCceeeccCchhHHHHHHHHHHhhhccCC-CCcChhhhhcceEeCCCCCCCCHHH
Q psy4370 57 ADEIWSDGLVPLSRSPLDPYLSDTLPPSVTITDACLPVLTLLRVLNAVNRNWGG-SSWDMKTLMECCRIDHGYNHNSKAI 135 (191)
Q Consensus 57 ~d~l~~dgv~p~v~~~L~~FL~~~lp~~v~I~D~s~~~L~LLrl~~~LsrlcG~-~~idv~dlk~~t~y~~Gy~~~~~~I 135 (191)
+|+....||..|+.++..+|-.+..-+.+.|+.+++..- + +||. ++|+++.|.+|++++|||+.+||.|
T Consensus 456 Id~tv~kGVqkQleAFr~GF~~VF~~~~Lqif~p~EL~~----l------lcg~~e~ws~~TL~~~i~~DHGYT~~Sp~i 525 (621)
T KOG0170|consen 456 IDATVGKGVQKQLEAFRSGFSSVFPYEHLQIFTPEELVT----L------LCGVEEDWSMATLMEHIKADHGYTMDSPII 525 (621)
T ss_pred HHHHHhhhHHHHHHHHHhhhhhccchhheeecCHHHHHH----H------hccchhhccHHHHHHhcccccCccCCCcHH
Confidence 455677888888888888888888888899998877542 2 4885 5799999999999999999999999
Q ss_pred HHHHHHHhcCCHHHHHhhcchhcCCCCCCCCccccCcceEEEcCcCCCCCCCCC
Q psy4370 136 KYLFHVLSCYSSPEQRDFLQFVTGSPRLPVGAKTKCQPKAITLGLIERLTKNAD 189 (191)
Q Consensus 136 ~wFW~vv~~fs~eer~~fL~FvTGssrlP~gGf~~L~p~~~~i~~~~~l~~~~~ 189 (191)
+.|.+++..|+.+|||.||||||||+|||+|||+.|+|+++||..-.--+.+||
T Consensus 526 ~~li~ils~f~~~qQR~FLQFvTGSprLPiGGfasLNPklTIVrKh~e~~~t~D 579 (621)
T KOG0170|consen 526 HDLISILSAFDKEQQRLFLQFVTGSPRLPIGGFASLNPKLTIVRKHAEDSETPD 579 (621)
T ss_pred HHHHHHhhhhchHHHHHHHHHhcCCCCCCCCcccccCCCeEEEeccCCCCCCcc
Confidence 999999999999999999999999999999999999999999975443355554
No 10
>KOG0940|consensus
Probab=99.57 E-value=2.5e-15 Score=135.76 Aligned_cols=131 Identities=18% Similarity=0.252 Sum_probs=105.7
Q ss_pred eccCCcccceeecCCCCCcccCCCCCchhhhhHhhh---ccccccccccccchhcccCCCceeeccCchhHHHHHHHHHH
Q psy4370 27 FKPGLSLLWACYRGHNQGKSVSGKSSSKRKADEIWS---DGLVPLSRSPLDPYLSDTLPPSVTITDACLPVLTLLRVLNA 103 (191)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~k~~~~rk~d~l~~---dgv~p~v~~~L~~FL~~~lp~~v~I~D~s~~~L~LLrl~~~ 103 (191)
++|||.++ +++..+++.+++.+.+ .++..+....+.+|.+........+++..+.++
T Consensus 184 l~p~g~~~------------~v~~~n~~~yi~~l~~r~~~~~~~q~~~l~~~~~~~~p~~~~~~~~e~~~e~-------- 243 (358)
T KOG0940|consen 184 LKPNGANI------------QVTEENKKEYIMLLQNRFERGIQEQLKALLQGFNELLPQSLLRIFDEMELEL-------- 243 (358)
T ss_pred ecCCCccc------------ccccccHHHHHHHHHHHHHHHHHHHHHHHhccccccCCcccccccchhhHHH--------
Confidence 77887776 3555556666666644 666666667777777777555566665554443
Q ss_pred hhhccCCCCcChhhhhcceEeCCCCCCCCHHHHHHHHHHhcCCHHHHHhhcchhcCCCCCCCCccccCc----ceEEEcC
Q psy4370 104 VNRNWGGSSWDMKTLMECCRIDHGYNHNSKAIKYLFHVLSCYSSPEQRDFLQFVTGSPRLPVGAKTKCQ----PKAITLG 179 (191)
Q Consensus 104 LsrlcG~~~idv~dlk~~t~y~~Gy~~~~~~I~wFW~vv~~fs~eer~~fL~FvTGssrlP~gGf~~L~----p~~~~i~ 179 (191)
.+||..++|++||++++.|. +|..++++|.|||+.+.+|++++|.+.++|+||++++|..||+.|. |+.++|.
T Consensus 244 --~~~~~~~~~~~d~~~~t~~~-~~~~~~~~i~wf~~~v~~~~~~~r~r~l~~~tg~~~vp~~~~~~l~~s~~~~~~~ie 320 (358)
T KOG0940|consen 244 --ALSGDPEIDVNDWKQNTEYR-GYSETDRQIDWFWNNVDEMDNEERIRLLQFVTGTSRVPVEGFAILSGSNGPRKFCIE 320 (358)
T ss_pred --HhcCCcccchhHHhhhcccc-cccCCccccHHHHHhhhhcChHHHHhhhhccCCCccccccchhhccCCCccCceeec
Confidence 25999999999999999999 7999999999999999999999999999999999999999999998 6788887
Q ss_pred c
Q psy4370 180 L 180 (191)
Q Consensus 180 ~ 180 (191)
.
T Consensus 321 ~ 321 (358)
T KOG0940|consen 321 K 321 (358)
T ss_pred C
Confidence 4
No 11
>KOG0943|consensus
Probab=98.12 E-value=2.4e-06 Score=86.87 Aligned_cols=124 Identities=19% Similarity=0.244 Sum_probs=80.3
Q ss_pred ceeeeeccCCcccceeecCCCCCcccCCCCCch---hhhhHhhhccccccccccccchhcccCCCce-eeccCchhHHHH
Q psy4370 22 RVMSPFKPGLSLLWACYRGHNQGKSVSGKSSSK---RKADEIWSDGLVPLSRSPLDPYLSDTLPPSV-TITDACLPVLTL 97 (191)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~---rk~d~l~~dgv~p~v~~~L~~FL~~~lp~~v-~I~D~s~~~L~L 97 (191)
+.-+.+||.|-.| +++|-+-- +|+-+.-+-|+..+..+.+..-+..++|++. .=.++..
T Consensus 2828 a~qVeL~PNGdei------------lVnkdNViEYV~KYAE~~llgk~~i~feAiReGiLDViPenmL~~LT~ED----- 2890 (3015)
T KOG0943|consen 2828 AGQVELIPNGDEI------------LVNKDNVIEYVRKYAEHRLLGKAEIPFEAIREGILDVIPENMLEDLTAED----- 2890 (3015)
T ss_pred ceeEEEecCCcee------------eecchhHHHHHHHHHHhhhheeeeccHHHHHHhHHhhcchhhhcccCHhH-----
Confidence 3556777777776 23333221 4555555555555444444444444555542 1111111
Q ss_pred HHHHHHhhhccCCCCcChhhhhcceEeCCCCCCC----CHHHHHHHHHHhcCCHHHHHhhcchhcCCCCCCCCc
Q psy4370 98 LRVLNAVNRNWGGSSWDMKTLMECCRIDHGYNHN----SKAIKYLFHVLSCYSSPEQRDFLQFVTGSPRLPVGA 167 (191)
Q Consensus 98 Lrl~~~LsrlcG~~~idv~dlk~~t~y~~Gy~~~----~~~I~wFW~vv~~fs~eer~~fL~FvTGssrlP~gG 167 (191)
+|+ .+||-.++++.-|.++|-+.+....+ -+.-+|||+|++.|+..+|+.+..|+|||+.||..|
T Consensus 2891 fRL-----iicG~eeVniqmL~e~TgFlDES~anaEkL~qFKqWFWqiiEkfs~qEkQdLVfFWTgSPaLPAa~ 2959 (3015)
T KOG0943|consen 2891 FRL-----IICGCEEVNIQMLIEFTGFLDESGANAEKLLQFKQWFWQIIEKFSMQEKQDLVFFWTGSPALPAAE 2959 (3015)
T ss_pred hee-----eeecccceehhHhhhhccccccccccHHHHHHHHHHHHHHHHHHhhhhhccEEEEecCCCCCCccc
Confidence 112 27999999999999999775432222 246789999999999999999999999999999986
No 12
>PHA02681 ORF089 virion membrane protein; Provisional
Probab=34.45 E-value=24 Score=26.31 Aligned_cols=20 Identities=30% Similarity=0.448 Sum_probs=17.9
Q ss_pred hcCCHHHHHhhcchhcCCCC
Q psy4370 143 SCYSSPEQRDFLQFVTGSPR 162 (191)
Q Consensus 143 ~~fs~eer~~fL~FvTGssr 162 (191)
.+||++|-|.|=+|+|||+-
T Consensus 50 D~lTpDQVrAlHRlvTsSpe 69 (92)
T PHA02681 50 DKMTDDQVRAFHALVTSSPE 69 (92)
T ss_pred ccCCHHHHHHHHHHHhCCCC
Confidence 36999999999999999974
No 13
>PF13945 NST1: Salt tolerance down-regulator
Probab=31.20 E-value=33 Score=28.94 Aligned_cols=22 Identities=18% Similarity=0.428 Sum_probs=18.5
Q ss_pred CCHHHHHHHHHHhcCCHHHHHhhcc
Q psy4370 131 NSKAIKYLFHVLSCYSSPEQRDFLQ 155 (191)
Q Consensus 131 ~~~~I~wFW~vv~~fs~eer~~fL~ 155 (191)
+...|+-|| .+|++++|+.||+
T Consensus 103 Ere~LkeFW---~SL~eeERr~LVk 124 (190)
T PF13945_consen 103 EREKLKEFW---ESLSEEERRSLVK 124 (190)
T ss_pred HHHHHHHHH---HccCHHHHHHHHH
Confidence 456899999 5699999999986
Done!