Query psy4370
Match_columns 191
No_of_seqs 175 out of 1180
Neff 5.5
Searched_HMMs 29240
Date Fri Aug 16 23:48:23 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4370.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/4370hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1c4z_A E6AP, ubiquitin-protein 100.0 1.3E-30 4.3E-35 233.0 5.7 142 23-186 175-322 (358)
2 2oni_A E3 ubiquitin-protein li 100.0 1.9E-30 6.4E-35 234.4 3.5 142 23-186 211-363 (392)
3 1nd7_A WW domain-containing pr 100.0 3.9E-30 1.3E-34 230.9 3.5 141 23-186 192-343 (374)
4 1zvd_A SMAD ubiquitination reg 100.0 2.7E-29 9.3E-34 225.9 6.4 141 23-186 192-344 (380)
5 3h1d_A E3 ubiquitin-protein li 100.0 1.1E-29 3.7E-34 230.6 2.5 140 24-186 217-368 (405)
6 3olm_A E3 ubiquitin-protein li 99.9 3.9E-29 1.3E-33 228.1 3.4 141 23-186 242-393 (429)
7 3pt3_A E3 ubiquitin-protein li 99.9 9.6E-25 3.3E-29 168.5 4.9 75 111-186 2-83 (118)
8 1l6x_B Minimized B-domain of p 25.8 51 0.0018 19.5 2.4 23 133-155 4-28 (34)
9 2kzi_A Engineered protein, ZHE 25.3 26 0.00089 24.1 1.2 20 136-155 23-44 (70)
10 2lr2_A Immunoglobulin G-bindin 24.9 45 0.0015 23.5 2.4 29 133-161 21-51 (88)
11 1zda_A Mini protein A domain, 20.2 43 0.0015 20.4 1.3 22 134-155 10-33 (38)
No 1
>1c4z_A E6AP, ubiquitin-protein ligase E3A; bilobal structure, elongated shape, E3 ubiquitin ligase, E2 ubiquitin conjugating enzyme; 2.60A {Homo sapiens} SCOP: d.148.1.1 PDB: 1d5f_A
Probab=99.96 E-value=1.3e-30 Score=232.98 Aligned_cols=142 Identities=23% Similarity=0.273 Sum_probs=119.5
Q ss_pred eeeeeccCCcccceeecCCCCCcccCCCCCchh----hhhHhhhccccccccccccchhcccCCCcee-eccCchhHHHH
Q psy4370 23 VMSPFKPGLSLLWACYRGHNQGKSVSGKSSSKR----KADEIWSDGLVPLSRSPLDPYLSDTLPPSVT-ITDACLPVLTL 97 (191)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~r----k~d~l~~dgv~p~v~~~L~~FL~~~lp~~v~-I~D~s~~~L~L 97 (191)
.-.+++|||+.+ ++|..+++. ..+++.+.++..++.++.++|..+.++..+. ++++.+.++.
T Consensus 175 ~~~eL~p~G~~i------------~VT~~N~~eYv~l~~~~~l~~~i~~q~~af~~Gf~~vip~~~L~~lF~~~ELe~l- 241 (358)
T 1c4z_A 175 MMYDLKENGDKI------------PITNENRKEFVNLYSDYILNKSVEKQFKAFRRGFHMVTNESPLKYLFRPEEIELL- 241 (358)
T ss_dssp EEEESSTTTTTS------------BCCTTTHHHHHHHHHHHHHTSTTHHHHHHHHHHHHHHHSSSCSCSCSSTHHHHHH-
T ss_pred eeeecCCCCccc------------ccccccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCcchhhcCCCHHHHHHH-
Confidence 456899999998 344444433 3445688889999999999999888877664 7888776543
Q ss_pred HHHHHHhhhccCCCCcChhhhhcceEeCCCCCCCCHHHHHHHHHHhcCCHHHHHhhcchhcCCCCCCCCccccCcceEEE
Q psy4370 98 LRVLNAVNRNWGGSSWDMKTLMECCRIDHGYNHNSKAIKYLFHVLSCYSSPEQRDFLQFVTGSPRLPVGAKTKCQPKAIT 177 (191)
Q Consensus 98 Lrl~~~LsrlcG~~~idv~dlk~~t~y~~Gy~~~~~~I~wFW~vv~~fs~eer~~fL~FvTGssrlP~gGf~~L~p~~~~ 177 (191)
+||.++||++||++||+|+|||+++|++|+|||+||++||+|+|++||+|||||+|+|++||++|++.+..
T Consensus 242 ---------i~G~~~id~~~l~~~t~y~~gy~~~~~~i~~FW~vv~~~~~eer~~fL~FvTGs~rlP~~Gf~~l~~~I~~ 312 (358)
T 1c4z_A 242 ---------ICGSRNLDFQALEETTEYDGGYTRDSVLIREFWEIVHSFTDEQKRLFLQFTTGTDRAPVGGLGKLKMIIAK 312 (358)
T ss_dssp ---------HHCBCCCCCTTTSTTCEEESSCCSSCHHHHHHHHHHHTSCHHHHHHHHHHHSSSSSBCTTCGGGGCCEEEE
T ss_pred ---------hhcccCCCHHHHHHHceeCCCCCCCcchhhhHHHHHHhCCHHHHHHHHHHHcCCCCCCCCCcccceeeeec
Confidence 59999999999999999999999999999999999999999999999999999999999999999866655
Q ss_pred cC-cCCCCCC
Q psy4370 178 LG-LIERLTK 186 (191)
Q Consensus 178 i~-~~~~l~~ 186 (191)
.+ +.++||+
T Consensus 313 ~~~~~~~LP~ 322 (358)
T 1c4z_A 313 NGPDTERLPT 322 (358)
T ss_dssp EEESCSCCCE
T ss_pred CCCCCCCCeE
Confidence 54 5688885
No 2
>2oni_A E3 ubiquitin-protein ligase NEDD4-like protein; alpha and beta protein (A + B), E3 ligase, HECT domain, UBL- conjugation pathway; HET: MSE; 2.20A {Homo sapiens} PDB: 3jvz_C 3jw0_C 2xbf_A 2xbb_A
Probab=99.96 E-value=1.9e-30 Score=234.39 Aligned_cols=142 Identities=18% Similarity=0.226 Sum_probs=118.1
Q ss_pred eeeeeccCCcccceeecCCCCCcccCCCCCchhhh----hHhhhccccccccccccchhcccCCCceeeccCchhHHHHH
Q psy4370 23 VMSPFKPGLSLLWACYRGHNQGKSVSGKSSSKRKA----DEIWSDGLVPLSRSPLDPYLSDTLPPSVTITDACLPVLTLL 98 (191)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~rk~----d~l~~dgv~p~v~~~L~~FL~~~lp~~v~I~D~s~~~L~LL 98 (191)
..++++|||+.+ ++|..++++++ +++.+.++..++.++.++|..+++.+.+.++++.+.++.
T Consensus 211 ~~veL~p~G~~i------------~VT~~N~~eYv~l~~~~~l~~~i~~q~~af~~Gf~~vip~~~L~~F~~~ELe~l-- 276 (392)
T 2oni_A 211 YQVDLKPNGSEI------------MVTNENKREYIDLVIQWRFVNRVQKQMNAFLEGFTELLPIDLIKIFDENELELL-- 276 (392)
T ss_dssp EEEESSTTGGGC------------BCCTTTHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHHSCHHHHTTSCHHHHHHH--
T ss_pred eEEecCCCCccC------------ccchhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccHHhhhcCCHHHHHHh--
Confidence 356799999998 34444443333 446778899999999999999988888888877765542
Q ss_pred HHHHHhhhccCCCCcChhhhhcceEeCCCCCCCCHHHHHHHHHHhcCCHHHHHhhcchhcCCCCCCCCccccCc----ce
Q psy4370 99 RVLNAVNRNWGGSSWDMKTLMECCRIDHGYNHNSKAIKYLFHVLSCYSSPEQRDFLQFVTGSPRLPVGAKTKCQ----PK 174 (191)
Q Consensus 99 rl~~~LsrlcG~~~idv~dlk~~t~y~~Gy~~~~~~I~wFW~vv~~fs~eer~~fL~FvTGssrlP~gGf~~L~----p~ 174 (191)
+||.++||++||++||+|+|||+++|++|+|||+||++||+|+|++||+|||||+|+|++||++|. |+
T Consensus 277 --------icG~~~id~~dl~~~t~y~~gy~~~~~~i~~FW~vv~~~s~eer~~fL~FvTGs~rlP~~Gf~~L~~~~gp~ 348 (392)
T 2oni_A 277 --------MCGLGDVDVNDWRQHSIYKNGYCPNHPVIQWFWKAVLLMDAEKRIRLLQFVTGTSRVPMNGFAELYGSNGPQ 348 (392)
T ss_dssp --------HHCCCCCCHHHHHHTCEEETTCCTTCHHHHHHHHHHHHSCHHHHHHHHHHHHSCSCCCTTCGGGCEETTEEC
T ss_pred --------hcCCCCCCHHHHhcceEECCCCCCCCchheeHHHHHHhCCHHHHHHHHHHHhCCCCCCCcchhhhcccCCCC
Confidence 599999999999999999999999999999999999999999999999999999999999999996 44
Q ss_pred EEEcC---cCCCCCC
Q psy4370 175 AITLG---LIERLTK 186 (191)
Q Consensus 175 ~~~i~---~~~~l~~ 186 (191)
.++|+ ..++||+
T Consensus 349 ~f~I~~~~~~~~LP~ 363 (392)
T 2oni_A 349 LFTIEQWGSPEKLPR 363 (392)
T ss_dssp CCEEEECSCTTSCCE
T ss_pred ceEEEeCCCCCcCcE
Confidence 44443 5677875
No 3
>1nd7_A WW domain-containing protein 1; HECT, ubiquitin, ligase, WWP1; 2.10A {Homo sapiens} SCOP: d.148.1.1 PDB: 3tug_A
Probab=99.96 E-value=3.9e-30 Score=230.87 Aligned_cols=141 Identities=20% Similarity=0.227 Sum_probs=117.7
Q ss_pred eeeeeccCCcccceeecCCCCCcccCCCCCchhh----hhHhhhccccccccccccchhcccCCCceeeccCchhHHHHH
Q psy4370 23 VMSPFKPGLSLLWACYRGHNQGKSVSGKSSSKRK----ADEIWSDGLVPLSRSPLDPYLSDTLPPSVTITDACLPVLTLL 98 (191)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~rk----~d~l~~dgv~p~v~~~L~~FL~~~lp~~v~I~D~s~~~L~LL 98 (191)
.-.+++|||+++ ++|..+++.+ .+++.+.++..++.++.++|..+++++.+.++++.+.++.
T Consensus 192 ~~veL~p~G~~i------------~VT~~N~~eYv~l~~~~~l~~~i~~q~~af~~Gf~~vip~~~L~~F~~~ELe~l-- 257 (374)
T 1nd7_A 192 TSHDLKLGGSNI------------LVTEENKDEYIGLMTEWRFSRGVQEQTKAFLDGFNEVVPLQWLQYFDEKELEVM-- 257 (374)
T ss_dssp CCEESSTTGGGC------------BCCTTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHSCGGGGTTCCHHHHHHH--
T ss_pred eeEecCCCCcCc------------eeccccHHHHHHHHHHHHHhccHHHHHHHHHHhhhhhCCHHHHhcCCHHHHHHH--
Confidence 446899999998 3444444433 3456788999999999999999999888888888776543
Q ss_pred HHHHHhhhccCCCCcChhhhhcceEeCCCCCCCCHHHHHHHHHHhcCCHHHHHhhcchhcCCCCCCCCccccCc----ce
Q psy4370 99 RVLNAVNRNWGGSSWDMKTLMECCRIDHGYNHNSKAIKYLFHVLSCYSSPEQRDFLQFVTGSPRLPVGAKTKCQ----PK 174 (191)
Q Consensus 99 rl~~~LsrlcG~~~idv~dlk~~t~y~~Gy~~~~~~I~wFW~vv~~fs~eer~~fL~FvTGssrlP~gGf~~L~----p~ 174 (191)
+||.++||++||++||.|+| |+.+|++|+|||+||++||+|+|++||+|||||+|+|++||++|. |+
T Consensus 258 --------i~G~~~id~~dl~~~t~y~g-y~~~~~~i~~FW~vv~~~~~eer~~fL~FvTGs~rlP~~Gf~~L~~~~gp~ 328 (374)
T 1nd7_A 258 --------LCGMQEVDLADWQRNTVYRH-YTRNSKQIIWFWQFVKETDNEVRMRLLQFVTGTCRLPLGGFAELMGSNGPQ 328 (374)
T ss_dssp --------HHCCCCCCHHHHHHTEEEES-CCTTSHHHHHHHHHHHHSCHHHHHHHHHHHHSCSCCCTTCGGGCEETTEEC
T ss_pred --------hcCCCCCCHHHHhhheEEcC-CCCCCcceeeHHHHHHhcCHHHHHHHHHHHhCCCCCCCcchhhccccCCCC
Confidence 59999999999999999985 999999999999999999999999999999999999999999997 33
Q ss_pred EEEcC---cCCCCCC
Q psy4370 175 AITLG---LIERLTK 186 (191)
Q Consensus 175 ~~~i~---~~~~l~~ 186 (191)
.++|+ ..++||+
T Consensus 329 ~f~I~~~~~~~~LP~ 343 (374)
T 1nd7_A 329 KFCIEKVGKDTWLPR 343 (374)
T ss_dssp CEEEECCSCTTSCCE
T ss_pred ceEEEeCCCCCcCCE
Confidence 34443 4677774
No 4
>1zvd_A SMAD ubiquitination regulatory factor 2; ubiquitin ligasecatalytic mechanism,X-RAY ligase; 2.10A {Homo sapiens}
Probab=99.95 E-value=2.7e-29 Score=225.90 Aligned_cols=141 Identities=16% Similarity=0.180 Sum_probs=117.3
Q ss_pred eeeeeccCCcccceeecCCCCCcccCCCCCchhhh----hHhhhccccccccccccchhcccCCCceeeccCchhHHHHH
Q psy4370 23 VMSPFKPGLSLLWACYRGHNQGKSVSGKSSSKRKA----DEIWSDGLVPLSRSPLDPYLSDTLPPSVTITDACLPVLTLL 98 (191)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~rk~----d~l~~dgv~p~v~~~L~~FL~~~lp~~v~I~D~s~~~L~LL 98 (191)
...+++|||+++ ++|..+++.++ +++.+.++..++.++.++|..+++++.+.++++.+.++.
T Consensus 192 ~~veL~p~G~~i------------~VT~~N~~eYv~l~~~~~l~~~i~~q~~af~~Gf~~vip~~~L~~F~~~ELe~l-- 257 (380)
T 1zvd_A 192 IQHELKPNGKSI------------PVNEENKKEYVRLYVNWRFLRGIEAQFLALQKGFNEVIPQHLLKTFDEKELELI-- 257 (380)
T ss_dssp EEEESSTTCCCC------------CCTTTTHHHHHHHHHHHHHTTTTHHHHHHHHHHHHHHSCGGGGTTCCHHHHHHH--
T ss_pred eEEecCCCCCCC------------ccccccHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHhHHHHHhCCCHHHHHHh--
Confidence 346799999998 34444444333 456778899999999999999999888888888776542
Q ss_pred HHHHHhhhccCCCCcChhhhhcceEeCCCCCCCCHHHHHHHHHHhcCCHHHHHhhcchhcCCCCCCCCccccCcc----e
Q psy4370 99 RVLNAVNRNWGGSSWDMKTLMECCRIDHGYNHNSKAIKYLFHVLSCYSSPEQRDFLQFVTGSPRLPVGAKTKCQP----K 174 (191)
Q Consensus 99 rl~~~LsrlcG~~~idv~dlk~~t~y~~Gy~~~~~~I~wFW~vv~~fs~eer~~fL~FvTGssrlP~gGf~~L~p----~ 174 (191)
+||.++||++||++||.|. ||+++|++|+|||+||++||+|+|++||+|||||+|+|++||++|+| +
T Consensus 258 --------i~G~~~id~~dl~~~t~y~-gy~~~~~~i~~FW~vv~~~s~eer~~fL~FvTGs~rlP~~Gf~~L~~~~gp~ 328 (380)
T 1zvd_A 258 --------ICGLGKIDVNDWKVNTRLK-HCTPDSNIVKWFWKAVEFFDEERRARLLQFVTGSSRVPLQGFKALQGAAGPR 328 (380)
T ss_dssp --------HHCBSSCCHHHHHHTEEEE-SSCTTSHHHHHHHHHHHHSCHHHHHHHHHHHHSCSSBCTTCGGGCEETTEEC
T ss_pred --------hCCCCCCChhhhhhccEec-CCCCCcchhhhHHHHHHhCCHHHHHHHHHHHhCCCCCCCcchhhccccCCCC
Confidence 5999999999999999998 79999999999999999999999999999999999999999999973 3
Q ss_pred -EEEc---CcCCCCCC
Q psy4370 175 -AITL---GLIERLTK 186 (191)
Q Consensus 175 -~~~i---~~~~~l~~ 186 (191)
|+|. +..++||+
T Consensus 329 ~f~I~~~~~~~~~LP~ 344 (380)
T 1zvd_A 329 LFTIHQIDACTNNLPK 344 (380)
T ss_dssp CEEEEECCCCTTSCCE
T ss_pred ceEEEecCCCCCCCCE
Confidence 4443 14677774
No 5
>3h1d_A E3 ubiquitin-protein ligase HUWE1; E3ligase, HECT, LOBE, alternative splicing, chromosomal rearrangement, cytoplasm, differentiation; 1.89A {Homo sapiens} PDB: 3g1n_A
Probab=99.95 E-value=1.1e-29 Score=230.55 Aligned_cols=140 Identities=18% Similarity=0.237 Sum_probs=117.3
Q ss_pred eeeeccCCcccceeecCCCCCcccCCCCCchhh----hhHhhhccccccccccccchhcccCCCceeeccCchhHHHHHH
Q psy4370 24 MSPFKPGLSLLWACYRGHNQGKSVSGKSSSKRK----ADEIWSDGLVPLSRSPLDPYLSDTLPPSVTITDACLPVLTLLR 99 (191)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~rk----~d~l~~dgv~p~v~~~L~~FL~~~lp~~v~I~D~s~~~L~LLr 99 (191)
.++++|||++| ++|..+++.+ .+++.+.++..++.++.++|..+++.+.+.++++.+.++.
T Consensus 217 ~veL~p~G~~i------------~VT~~Nk~eYV~l~~~~~l~~~v~~q~~aF~~Gf~~Vip~~~L~lF~~~ELe~L--- 281 (405)
T 3h1d_A 217 VRDLKPNGANI------------LVTEENKKEYVHLVCQMRMTGAIRKQLAAFLEGFYEIIPKRLISIFTEQELELL--- 281 (405)
T ss_dssp GGGGSSCSSEE------------ECCTTTHHHHHHHHHHHHHTGGGHHHHHHHHHHHHHHSCHHHHTTSCHHHHHHH---
T ss_pred eEeecCCCCCC------------ccchHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhCCCHHHHHHH---
Confidence 46899999998 3444444433 3456788899999999999999988888888887775543
Q ss_pred HHHHhhhccCCCCcChhhhhcceEeCCCCCCCCHHHHHHHHHHhcCCHHHHHhhcchhcCCCCCCCCccccCcc-----e
Q psy4370 100 VLNAVNRNWGGSSWDMKTLMECCRIDHGYNHNSKAIKYLFHVLSCYSSPEQRDFLQFVTGSPRLPVGAKTKCQP-----K 174 (191)
Q Consensus 100 l~~~LsrlcG~~~idv~dlk~~t~y~~Gy~~~~~~I~wFW~vv~~fs~eer~~fL~FvTGssrlP~gGf~~L~p-----~ 174 (191)
+||.++||++||++||.|. ||+.+|++|+|||++|++||+++|++||+|||||+|+|++||++|+| +
T Consensus 282 -------i~G~~~id~~dl~~~t~y~-gy~~~~~~i~~FW~v~~~~s~eer~~fL~FvTGs~rlP~~Gf~~L~~~~~~~~ 353 (405)
T 3h1d_A 282 -------ISGLPTIDIDDLKSNTEYH-KYQSNSIQIQWFWRALRSFDQADRAKFLQFVTGTSKVPLQGFAALEGMNGIQK 353 (405)
T ss_dssp -------HHCCCCCCHHHHHHTEEEE-SSCTTCHHHHHHHHHHHHSCHHHHHHHHHHHHSSSCCCTTCGGGCBCSSSBCC
T ss_pred -------hCCCCCCCHHHHHhhCccc-CCCCCCchHhhHHHHHHhCCHHHHHHHHHHHcCCCCCCCCccccccccCCCce
Confidence 5999999999999999997 79999999999999999999999999999999999999999999984 5
Q ss_pred EEEcC---cCCCCCC
Q psy4370 175 AITLG---LIERLTK 186 (191)
Q Consensus 175 ~~~i~---~~~~l~~ 186 (191)
|.+.. ..++||+
T Consensus 354 f~i~~~~~~~~~LP~ 368 (405)
T 3h1d_A 354 FQIHRDDRSTDRLPS 368 (405)
T ss_dssp EEEEEECSCTTSCCE
T ss_pred EEEeeCCCCCCCCcc
Confidence 55542 4678885
No 6
>3olm_A E3 ubiquitin-protein ligase RSP5; ligase; 2.50A {Saccharomyces cerevisiae}
Probab=99.95 E-value=3.9e-29 Score=228.11 Aligned_cols=141 Identities=19% Similarity=0.221 Sum_probs=117.2
Q ss_pred eeeeeccCCcccceeecCCCCCcccCCCCCchhhh----hHhhhccccccccccccchhcccCCCceeeccCchhHHHHH
Q psy4370 23 VMSPFKPGLSLLWACYRGHNQGKSVSGKSSSKRKA----DEIWSDGLVPLSRSPLDPYLSDTLPPSVTITDACLPVLTLL 98 (191)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~rk~----d~l~~dgv~p~v~~~L~~FL~~~lp~~v~I~D~s~~~L~LL 98 (191)
...+++|||+++ ++|..+++.++ +++.+.++..++.++.++|..+++.+.+.++++.+.++.
T Consensus 242 ~~veL~p~G~~i------------~VT~~Nk~eYV~l~~~~~l~~~v~~q~~aF~~Gf~~vip~~~L~~F~~~ELe~L-- 307 (429)
T 3olm_A 242 VTVDLKPDGRNI------------EVTDGNKKEYVELYTQWRIVDRVQEQFKAFMDGFNELIPEDLVTVFDERELELL-- 307 (429)
T ss_dssp EEEESSTTGGGS------------BCCTTTHHHHHHHHHHHHHTTTTHHHHHHHHHHHHTTSCHHHHTTSCHHHHHHH--
T ss_pred eeEeccCCCccc------------ccCchhHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhcCCHHHHhcCCHHHHHHH--
Confidence 456899999998 34444444333 456788888999999999999988887888887765542
Q ss_pred HHHHHhhhccCCCCcChhhhhcceEeCCCCCCCCHHHHHHHHHHhcCCHHHHHhhcchhcCCCCCCCCccccCcc-----
Q psy4370 99 RVLNAVNRNWGGSSWDMKTLMECCRIDHGYNHNSKAIKYLFHVLSCYSSPEQRDFLQFVTGSPRLPVGAKTKCQP----- 173 (191)
Q Consensus 99 rl~~~LsrlcG~~~idv~dlk~~t~y~~Gy~~~~~~I~wFW~vv~~fs~eer~~fL~FvTGssrlP~gGf~~L~p----- 173 (191)
+||.++||++||++||.|. ||+.+|++|+|||+||++||+|+|++||+|||||+|+|++||++|+|
T Consensus 308 --------i~G~~~id~~dl~~~t~y~-Gy~~~~~~I~~FW~vv~~~s~eer~~fL~FvTGs~rlP~~Gf~~L~~~~g~~ 378 (429)
T 3olm_A 308 --------IGGIAEIDIEDWKKHTDYR-GYQESDEVIQWFWKCVSEWDNEQRARLLQFTTGTSRIPVNGFKDLQGSDGPR 378 (429)
T ss_dssp --------HTCBCCCCHHHHHHTEEEE-SCCTTSHHHHHHHHHHHHSCHHHHHHHHHHHHSCSCBCTTCGGGCEETTEEC
T ss_pred --------hcCCCCCCHHHHHHhcccc-CCCCCchHHHHHHHHHHhCCHHHHHHHHhHhcCCCCCCCcccccccCcCCCc
Confidence 5999999999999999997 79999999999999999999999999999999999999999999985
Q ss_pred eEEEcC--cCCCCCC
Q psy4370 174 KAITLG--LIERLTK 186 (191)
Q Consensus 174 ~~~~i~--~~~~l~~ 186 (191)
+|.+.. ..++||+
T Consensus 379 ~f~I~~~~~~~~LP~ 393 (429)
T 3olm_A 379 RFTIEKAGEVQQLPK 393 (429)
T ss_dssp CEEEECCSCTTSCCE
T ss_pred eEEEeeCCCCCCCCc
Confidence 455443 4677774
No 7
>3pt3_A E3 ubiquitin-protein ligase UBR5; EDD, HHYD, mixed alpha-beta fold, ubiquitin ligase; 1.97A {Homo sapiens}
Probab=99.90 E-value=9.6e-25 Score=168.48 Aligned_cols=75 Identities=17% Similarity=0.263 Sum_probs=49.5
Q ss_pred CCcChhhhhcceEeCCCCCCCC----HHHHHHHHHHhcCCHHHHHhhcchhcCCCCCCC--CccccCcceEEEcC-cCCC
Q psy4370 111 SSWDMKTLMECCRIDHGYNHNS----KAIKYLFHVLSCYSSPEQRDFLQFVTGSPRLPV--GAKTKCQPKAITLG-LIER 183 (191)
Q Consensus 111 ~~idv~dlk~~t~y~~Gy~~~~----~~I~wFW~vv~~fs~eer~~fL~FvTGssrlP~--gGf~~L~p~~~~i~-~~~~ 183 (191)
+.|||+|||+||+|.++|+.++ ++|+|||+||++|++|+|++||+|+|||+|+|+ +||+.| |++.+.. +.++
T Consensus 2 ~~~Dv~dLr~~T~Y~~~~~~~~~~~~~~i~wFW~vv~~~~~eer~~fL~FvTGs~rlP~~~~Gf~~l-~~~~i~~~~~~~ 80 (118)
T 3pt3_A 2 PLGSVQMLISFTSFNDESGENAEKLLQFKRWFWSIVEKMSMTERQDLVYFWTSSPSLPASEEGFQPM-PSITIRPPDDQH 80 (118)
T ss_dssp ----------CCEEEECSCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHSCC-------------CEEEEESCCTTS
T ss_pred CccCHHHHHhhcEEcCCcCCCccccchHHHHHHHHHHHCCHHHHHHHHhHhcCCCCCCCcccCcccC-CcEEEECCCCCC
Confidence 5689999999999999898887 999999999999999999999999999999999 899999 6777664 6778
Q ss_pred CCC
Q psy4370 184 LTK 186 (191)
Q Consensus 184 l~~ 186 (191)
||.
T Consensus 81 LP~ 83 (118)
T 3pt3_A 81 LPT 83 (118)
T ss_dssp CCE
T ss_pred Ccc
Confidence 874
No 8
>1l6x_B Minimized B-domain of protein A Z34C; IGG1 FC, FC complex, immune system; HET: NAG BMA MAN GAL FUL; 1.65A {Homo sapiens} SCOP: k.13.1.1 PDB: 1oqo_C* 1oqx_C* 1zdc_A 1zdd_A
Probab=25.80 E-value=51 Score=19.54 Aligned_cols=23 Identities=4% Similarity=0.225 Sum_probs=18.8
Q ss_pred HHHHHHHHHHh--cCCHHHHHhhcc
Q psy4370 133 KAIKYLFHVLS--CYSSPEQRDFLQ 155 (191)
Q Consensus 133 ~~I~wFW~vv~--~fs~eer~~fL~ 155 (191)
+.-+-|.+|+. .+|+|+|-.|++
T Consensus 4 ~qQnaFYevLh~~nLtEeQrn~yI~ 28 (34)
T 1l6x_B 4 QCQRRFYEALHDPNLNEEQRNAKIK 28 (34)
T ss_dssp HHHHHHHHHHHCTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCCHHHHHhHHH
Confidence 34567999997 699999998876
No 9
>2kzi_A Engineered protein, ZHER2 affibody; protein binding; NMR {Staphylococcus aureus} PDB: 2kzj_A 2otk_E
Probab=25.27 E-value=26 Score=24.06 Aligned_cols=20 Identities=10% Similarity=0.353 Sum_probs=16.8
Q ss_pred HHHHHHHh--cCCHHHHHhhcc
Q psy4370 136 KYLFHVLS--CYSSPEQRDFLQ 155 (191)
Q Consensus 136 ~wFW~vv~--~fs~eer~~fL~ 155 (191)
..||+|+. .+++++|..|++
T Consensus 23 nAFYeiL~~pnLtEeQrngfI~ 44 (70)
T 2kzi_A 23 NAYWEIALLPNLNNQQKRAFIR 44 (70)
T ss_dssp TSSHHHHHCSSSCHHHHHHHHH
T ss_pred HHHHHHHcCCCcchhhhhcccc
Confidence 34999998 699999988875
No 10
>2lr2_A Immunoglobulin G-binding protein A; Z domain, lanthanide binding TAG, de novo protein; NMR {Artificial gene}
Probab=24.88 E-value=45 Score=23.53 Aligned_cols=29 Identities=10% Similarity=0.308 Sum_probs=23.0
Q ss_pred HHHHHHHHHHh--cCCHHHHHhhcchhcCCC
Q psy4370 133 KAIKYLFHVLS--CYSSPEQRDFLQFVTGSP 161 (191)
Q Consensus 133 ~~I~wFW~vv~--~fs~eer~~fL~FvTGss 161 (191)
..-.-|++|+. .+++|+|..|++=+---+
T Consensus 21 ~qqnAfyEIl~lPNLneeQrnafiqSLkDDp 51 (88)
T 2lr2_A 21 EQQNAFYEILHLPNLNEEQRNAFIQSLKDDS 51 (88)
T ss_dssp HHHHHHHHHHTCSSCCHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHhccCc
Confidence 45566999998 799999999998665433
No 11
>1zda_A Mini protein A domain, Z38; IGG binding domain, protein A mimic; NMR {Synthetic construct} SCOP: k.13.1.1 PDB: 1zdb_A
Probab=20.21 E-value=43 Score=20.36 Aligned_cols=22 Identities=5% Similarity=0.202 Sum_probs=18.5
Q ss_pred HHHHHHHHHh--cCCHHHHHhhcc
Q psy4370 134 AIKYLFHVLS--CYSSPEQRDFLQ 155 (191)
Q Consensus 134 ~I~wFW~vv~--~fs~eer~~fL~ 155 (191)
.-+-|.+||. .+|+|+|-.|++
T Consensus 10 QQnaFYevLh~~nLtEeQrn~yI~ 33 (38)
T 1zda_A 10 QQRRFYEALHDPNLNEEQRNAKIK 33 (38)
T ss_dssp SSHHHHHHHSCSSSCTTHHHHHHH
T ss_pred HHHHHHHHHcCCCCCHHHHHhHHH
Confidence 4567999997 699999998876
Done!