RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy4370
         (191 letters)



>d1c4za_ d.148.1.1 (A:) Ubiquitin-protein ligase E3a (E6ap) {Human
           (Homo sapiens) [TaxId: 9606]}
          Length = 350

 Score = 62.8 bits (152), Expect = 1e-12
 Identities = 20/58 (34%), Positives = 32/58 (55%)

Query: 109 GGSSWDMKTLMECCRIDHGYNHNSKAIKYLFHVLSCYSSPEQRDFLQFVTGSPRLPVG 166
           G  + D + L E    D GY  +S  I+  + ++  ++  ++R FLQF TG+ R PVG
Sbjct: 242 GSRNLDFQALEETTEYDGGYTRDSVLIREFWEIVHSFTDEQKRLFLQFTTGTDRAPVG 299


>d1nd7a_ d.148.1.1 (A:) WW domain-containing protein 1, WWP1 {Human
           (Homo sapiens) [TaxId: 9606]}
          Length = 374

 Score = 54.4 bits (130), Expect = 1e-09
 Identities = 18/58 (31%), Positives = 26/58 (44%), Gaps = 1/58 (1%)

Query: 109 GGSSWDMKTLMECCRIDHGYNHNSKAIKYLFHVLSCYSSPEQRDFLQFVTGSPRLPVG 166
           G    D+          H Y  NSK I + +  +    +  +   LQFVTG+ RLP+G
Sbjct: 260 GMQEVDLADWQRNTVYRH-YTRNSKQIIWFWQFVKETDNEVRMRLLQFVTGTCRLPLG 316


>d1d8ca_ c.1.13.1 (A:) Malate synthase G {Escherichia coli [TaxId:
           562]}
          Length = 720

 Score = 26.9 bits (59), Expect = 2.1
 Identities = 15/88 (17%), Positives = 27/88 (30%), Gaps = 14/88 (15%)

Query: 73  LDPYLSDTLPPSVTITDACLPVLTLLRVLNAVNRNWG-------GSSWDMKTLMECCRID 125
           +D  ++    P + +     P +     LNA N  WG       GS  D+          
Sbjct: 103 IDSEITSQAGPQLVV-----PAMNARYALNAANARWGSLYDALYGS--DIIPQEGAMVSG 155

Query: 126 HGYNHNSKAIKYLFHVLSCYSSPEQRDF 153
           +      + I ++   L      E   +
Sbjct: 156 YDPQRGEQVIAWVRRFLDESLPLENGSY 183


>d2cu2a2 c.68.1.20 (A:1-268) Putative mannose-1-phosphate guanylyl
          transferase (GDP)/mannose-6-phosphate isomerase
          TTHA1750 {Thermus thermophilus [TaxId: 274]}
          Length = 268

 Score = 25.8 bits (55), Expect = 4.0
 Identities = 9/24 (37%), Positives = 11/24 (45%), Gaps = 2/24 (8%)

Query: 11 WPFSRKHMSKQRVMSPFKPGLSLL 34
          WP SR+   K     P   G +LL
Sbjct: 17 WPLSREDRPKP--FLPLFEGKTLL 38


>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1,
          MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]}
          Length = 291

 Score = 24.7 bits (52), Expect = 8.2
 Identities = 8/37 (21%), Positives = 12/37 (32%), Gaps = 1/37 (2%)

Query: 5  WEVYEEWPFSRKHMSKQRVMSPFKPGLSLLWACYRGH 41
          W   E        + +++    F  G   L AC  G 
Sbjct: 17 WIGSET-DLEPPVVKRKKTKVKFDDGAVFLAACSSGD 52


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.319    0.134    0.433 

Gapped
Lambda     K      H
   0.267   0.0421    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 739,736
Number of extensions: 31846
Number of successful extensions: 59
Number of sequences better than 10.0: 1
Number of HSP's gapped: 59
Number of HSP's successfully gapped: 5
Length of query: 191
Length of database: 2,407,596
Length adjustment: 80
Effective length of query: 111
Effective length of database: 1,309,196
Effective search space: 145320756
Effective search space used: 145320756
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.8 bits)